RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy605
(348 letters)
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
catalytic domain. The protein architecture and deduced
catalytic mechanism of PP2C phosphatases are similar to
the PP1, PP2A, PP2B family of protein Ser/Thr
phosphatases, with which PP2C shares no sequence
similarity.
Length = 252
Score = 199 bits (509), Expect = 1e-62
Identities = 104/318 (32%), Positives = 157/318 (49%), Gaps = 72/318 (22%)
Query: 2 SGIGVNLRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKE 61
SG + LR QG RK MED A+ T D +D FFG+FDGHGG EAA + +
Sbjct: 3 SGKNLGLRYGLSSMQGVRKPMED----AHVITPDLSD-SGGFFGVFDGHGGSEAAKFLSK 57
Query: 62 HLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVA 121
+L + + ++ D +DV A+ + +++T + + ++ L + SG+TA VA
Sbjct: 58 NLPEILAEELIKEKDELEDVEEALRKAFLSTDEEILEE----------LEALSGSTAVVA 107
Query: 122 FIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVV--R 179
I +K+YV +VGDS VL + ++LT++HKP +E RI AGG V+ R
Sbjct: 108 LISGNKLYVANVGDSRAVLCRNGKA------VQLTEDHKPSNEDERARIEAAGGFVINGR 161
Query: 180 KNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTFVVSPEPDVG 239
NGV LA++R++GDF+ VS EPDV
Sbjct: 162 VNGV---------------------------LALSRAIGDFFLKP------YVSAEPDVT 188
Query: 240 VIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVDE 299
V+E+ T + LI +DGLW++LS Q+ VDIV + ++ + A +K L+D
Sbjct: 189 VVEL-TEKDDFLILASDGLWDVLSNQEVVDIV--RKHLSKDPKEA--------AKRLIDL 237
Query: 300 AIEKWRNSRTRADNTSVV 317
A+ R DN +VV
Sbjct: 238 ALA-----RGSKDNITVV 250
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 197 bits (504), Expect = 7e-62
Identities = 95/310 (30%), Positives = 142/310 (45%), Gaps = 62/310 (20%)
Query: 9 RVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKEHLLDSIV 68
G RK ED A + N+ + FG+FDGHGG A +A + L++ ++
Sbjct: 2 SAGVSDKGGDRKTNED----AVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELL 57
Query: 69 QQKSFWSD-NDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAFIMKSK 127
++ +++D+ A+ + ++ + + ++ + + SGTTA VA I +K
Sbjct: 58 EELEETLTLSEEDIEEALRKAFLRADEEILEEAQDEPD-----DARSGTTAVVALIRGNK 112
Query: 128 IYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVVRKNGVPRVV 187
+YV +VGDS VL E ++LTK+HKP EE +RI KAGG+V RV
Sbjct: 113 LYVANVGDSRAVLCRNGE------AVQLTKDHKPVNEEERERIEKAGGRV----SNGRV- 161
Query: 188 WNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTFVVSPEPDVGVIEMDTAQ 247
LAV R+LGDF VS EPDV V++ T
Sbjct: 162 --------------------PGVLAVTRALGDFDLK------PGVSAEPDVTVVK-LTED 194
Query: 248 HKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVDEAIEKWRNS 307
LI +DGLW++LS Q+AVDIV E Q ++ LVD A+ + +
Sbjct: 195 DDFLILASDGLWDVLSNQEAVDIVR----SELAKEDLQE-----AAQELVDLALRRGSH- 244
Query: 308 RTRADNTSVV 317
DN +VV
Sbjct: 245 ----DNITVV 250
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is
a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 252
Score = 182 bits (465), Expect = 5e-56
Identities = 97/297 (32%), Positives = 137/297 (46%), Gaps = 52/297 (17%)
Query: 8 LRVTGHCNQGGRKYMEDMFSVAYQQTEDFN-DLEYAFFGIFDGHGGVEAATYAKEHLLDS 66
L V G QG RK+MED +A + + + FF +FDGHGG +AA YA +HL
Sbjct: 1 LDVGGPRMQGFRKFMED-AHIAGKNLNASSGKDSFGFFAVFDGHGGSQAAKYAGKHLETI 59
Query: 67 IVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAFIMKS 126
+ ++SF + + D A+ + ++ D+ + +SG+TA VA I
Sbjct: 60 LALRRSFLTLDKLD---ALRKSFLEA------DEELRSDAANHEDLSSGSTAVVALIRGQ 110
Query: 127 KIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVVRKNGVPRV 186
K+YV +VGDS VL ++ N +LT++HKP +E +RI AGG V R RV
Sbjct: 111 KLYVANVGDSRAVLC-RNGNAI----KQLTEDHKPSNEDERRRIRGAGGFVSRNG---RV 162
Query: 187 VWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTFVVSPEPDVGVIEMDTA 246
LAV+R+ GDF + VS EPDV + T
Sbjct: 163 NGV---------------------LAVSRAFGDFELKKGK--PQPVSAEPDVTSHK-ITE 198
Query: 247 QHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVDEAIEK 303
+ LI +DGLW++LS Q+ VDIV E A+ LVDEAI
Sbjct: 199 SDEFLILASDGLWDVLSDQEVVDIVRSELSDGSPMEAAEK---------LVDEAIAY 246
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional.
Length = 365
Score = 115 bits (288), Expect = 4e-29
Identities = 98/336 (29%), Positives = 148/336 (44%), Gaps = 69/336 (20%)
Query: 8 LRVTGHCNQGGRKYMEDMFSVAYQQTEDF-----NDLEYAFFGIFDGHGGVEAATYAKEH 62
+R + G R MED++ DF D AF+G+FDGHGG AA +A H
Sbjct: 65 VRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYH 124
Query: 63 LLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAF 122
L IV+ + F ++ + ++ T A A + L SGTTA A
Sbjct: 125 LPRFIVEDEDFPR----EIEKVVSSAFLQTDTAF----AEACSLDASL--ASGTTALAAL 174
Query: 123 IMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVVRK-- 180
++ + V + GD VL + K +E++++HKP C +E KRI +GG V
Sbjct: 175 VVGRSLVVANAGDCRAVLCRRG------KAIEMSRDHKPMCSKERKRIEASGGYVYDGYL 228
Query: 181 NGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYN-SELDTFVVSPEPDVG 239
NG L VAR+LGD+ D +S EP++
Sbjct: 229 NGQ---------------------------LNVARALGDWHMEGMKGSDGGPLSAEPELM 261
Query: 240 VIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVDE 299
++ T + + LI G DG+W++ +Q+AVD F R + + N+ + SK LVDE
Sbjct: 262 TTQL-TEEDEFLIIGCDGIWDVFRSQNAVD---FARRR-----LQEHNDPVMCSKELVDE 312
Query: 300 AIEKWRNSRTRADNTSVVTLLIDPPGPP----PRPK 331
A++ R DN +VV + PP PRP+
Sbjct: 313 ALK-----RKSGDNLAVVVVCFQSQPPPNLVAPRPR 343
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 103 bits (260), Expect = 6e-26
Identities = 70/318 (22%), Positives = 118/318 (37%), Gaps = 73/318 (22%)
Query: 1 MSGIGVNLRVTGHCNQGG-RKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYA 59
SGI ++L+V G + G RK+ ED F + + N F + DG GG A A
Sbjct: 2 SSGI-LSLKVAGLSDVGTVRKHNEDAFLI----KPNENGNLLLLFAVADGMGGHAAGEVA 56
Query: 60 KEHLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTAT 119
+ ++++ + F N + + ++ E + A + GTT
Sbjct: 57 SKLAVEALARL--FDETNFNSLNESLEELLKEAILKANEAIAEEGQLNED-VRGMGTTLV 113
Query: 120 VAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVVR 179
+ I +K+YV +VGDS L E +LT++H E + I
Sbjct: 114 LLLIRGNKLYVANVGDSRAYLLRDGE------LKQLTEDHSLVNRLEQRGIITPEEARSH 167
Query: 180 KNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTFVVSPEPDVG 239
PR A+ R+LGDF EPD+
Sbjct: 168 ----PRR------------------------NALTRALGDFD-----------LLEPDIT 188
Query: 240 VIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVDE 299
+E++ L+ +DGLW+++S + VDI+ ++ + L++
Sbjct: 189 ELELEPG--DFLLLCSDGLWDVVSDDEIVDILK------NSETPQEA------ADKLIEL 234
Query: 300 AIEKWRNSRTRADNTSVV 317
A+E DN +VV
Sbjct: 235 ALE--GGGP---DNITVV 247
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
Length = 381
Score = 67.9 bits (166), Expect = 1e-12
Identities = 77/319 (24%), Positives = 126/319 (39%), Gaps = 81/319 (25%)
Query: 7 NLRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKEHLLDS 66
R C G R+ MED + ++ FFG+FDGH E + Y +
Sbjct: 21 IFRCASACVNGYRESMEDAHLLYLTD-------DWGFFGVFDGHVNDECSQYLARAWPQA 73
Query: 67 IVQQKSFWSDND-DDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAFIMK 125
+ ++ +D +++ I E ++++ + G+T T IMK
Sbjct: 74 LEKEPEPMTDERMEELCLEIDEEWMDSGRE------------------GGSTGTFCVIMK 115
Query: 126 S-KIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVVRKNGVP 184
+ VG+VGDS +++ + K + T++HKP P E +RI GG
Sbjct: 116 DVHLQVGNVGDSRVLVC------RDGKLVFATEDHKPNNPGERQRIEACGG--------- 160
Query: 185 RVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSY-----NSELDTFVVSPEPDVG 239
RVV NR V LAV+R+ GD S+ L+ V+ PDV
Sbjct: 161 RVVSNR--------VDGD--------LAVSRAFGDR-SFKVKGTGDYLEQKVI-AVPDVT 202
Query: 240 VIEMDTAQHKCLIFGTDGLWN-MLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVD 298
+ + +I DG++ S ++ V V EQ + ++ + + D
Sbjct: 203 HLTCQ--SNDFIILACDGVFEGNFSNEEVVAFVK------EQ--LETCDDLAVVAGRVCD 252
Query: 299 EAIEKWRNSRTRADNTSVV 317
EAI R S+ DN S +
Sbjct: 253 EAIR--RGSK---DNISCL 266
>gnl|CDD|233041 TIGR00596, rad1, DNA repair protein (rad1). All proteins in this
family for which functions are known are components in a
multiprotein endonuclease complex (usually made up of
Rad1 and Rad10 homologs). This complex is used primarily
for nucleotide excision repair but also for some aspects
of recombinational repair in some species. Most Archaeal
species also have homologs of these genes, but the
function of these Archaeal genes is not known, so we
have set our cutoff to only pick up the eukaryotic
genes.This family is based on the phylogenomic analysis
of JA Eisen (1999, Ph.D. Thesis, Stanford Universit [DNA
metabolism, DNA replication, recombination, and repair].
Length = 814
Score = 35.6 bits (82), Expect = 0.036
Identities = 15/75 (20%), Positives = 24/75 (32%)
Query: 257 GLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVDEAIEKWRNSRTRADNTSV 316
L L DAV + + + A S + L+D A + +R R
Sbjct: 197 HLLQSLVTYDAVSFLGLLDTSLRANKPAVSRKYSESPWLLLDAAQLIFSYARQRVYYEGE 256
Query: 317 VTLLIDPPGPPPRPK 331
+ + P PK
Sbjct: 257 GPNMKNEPVLEENPK 271
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C
is a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 211
Score = 33.8 bits (78), Expect = 0.077
Identities = 30/117 (25%), Positives = 40/117 (34%), Gaps = 26/117 (22%)
Query: 48 DGHGG-----------VEAATYAKEHLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAM 96
DG G VEAA A LLDS D+ +L AI +
Sbjct: 31 DGAGSAKRSDVGARLAVEAAVEALRELLDSG------ELPEDEALLRAILNAI---LAIL 81
Query: 97 WKDQANWQRTQSGLPSTSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKCL 153
A Q+ + P TT +A I I +GD +V +D D + L
Sbjct: 82 KAASAAAQQLE---PRDYATTLLLAVITPGGIVFFQIGDGAIV--VRDG-DGELQLL 132
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 31.2 bits (71), Expect = 1.0
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 15/142 (10%)
Query: 6 VNLRVTGHCNQGG-RKYMEDMFSVAYQQTEDFNDLE-----YAFFGIFDGHGGVEAATYA 59
V+L G + G R + ED F + + + N + + DG GG A A
Sbjct: 373 VSLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVA 432
Query: 60 KEHLLDSIVQQ-KSFWSDN--DDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGT 116
++++ Q + W D D++ I E ++A++ N Q +SG GT
Sbjct: 433 SALAVETLQQYFQQHWQDELPDEET---IREAIYLANEAIY--DLNQQNARSGS-GRMGT 486
Query: 117 TATVAFIMKSKIYVGHVGDSML 138
T +A + +++ V HVGDS L
Sbjct: 487 TLVMALVQDTQVAVAHVGDSRL 508
>gnl|CDD|216468 pfam01383, CpcD, CpcD/allophycocyanin linker domain.
Length = 55
Score = 26.8 bits (60), Expect = 2.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 165 EEIKRITKAGGKVV 178
E++RI + GGK+V
Sbjct: 37 AEMQRIHRLGGKIV 50
>gnl|CDD|224034 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 29.6 bits (67), Expect = 2.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 164 PEEIKRITKAGGKVVRKNGVPRVVWNRPKIGH 195
PE ++ +A G V+RK G P+VV +G
Sbjct: 25 PEFALKLGRALGSVLRKKGAPKVV-----VGR 51
>gnl|CDD|227501 COG5174, TFA2, Transcription initiation factor IIE, beta subunit
[Transcription].
Length = 285
Score = 28.8 bits (64), Expect = 3.7
Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 132 HVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVV---RKNGVPRVVW 188
+ +L + ++ +L + P ++ + K+ ++ K+G P VVW
Sbjct: 144 RSVEDLLKVLRSQGTEEGLSMKKL-MDGWPNVVPFVEELEKSNEILILRTDKDGSPVVVW 202
Query: 189 NRPKIGHKGPVRRS--TAFDEI---PFLAVARSLGDF 220
N + + PV + ++++ + + R L
Sbjct: 203 NNTQ-NLECPVDPEFKSLWNQVRIPTYHDLIRELNTA 238
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 28.8 bits (65), Expect = 4.0
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 81 VLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAFI--MKSKIYVGHV 133
HA E + ++ K ++ R + + T + +++++ HV
Sbjct: 125 TFHAEDEDRLRENRKELKGESAHPRIRDAEAAAVATARALKLARRHGARLHICHV 179
>gnl|CDD|227010 COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound
transport system, large permease component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 447
Score = 28.9 bits (65), Expect = 4.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 95 AMWKDQANWQRTQSGLPSTSGTTATVAFIM 124
A+ + NWQ + L +T+ T+ V FI+
Sbjct: 272 ALANGRLNWQMVKQALDATAKLTSMVLFIL 301
>gnl|CDD|225861 COG3324, COG3324, Predicted enzyme related to lactoylglutathione
lyase [General function prediction only].
Length = 127
Score = 27.3 bits (61), Expect = 6.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 161 PECPEEIKRITKAGGKVVR 179
+ ++R+ AGGKV+R
Sbjct: 80 DDIDATLERVVAAGGKVLR 98
>gnl|CDD|192370 pfam09765, WD-3, WD-repeat region. This entry is of a region of
approximately 100 residues containing three WD repeats
and six cysteine residues possibly as three
cystine-bridges. These regions are contained within the
Fancl protein in humans which is the putative E3
ubiquitin ligase subunit of the FA complex (Fanconi
anaemia). Eight subunits of the Fanconi anaemia gene
products form a multisubunit nuclear complex which is
required for mono-ubiquitination of a downstream FA
protein, FANCD2. The WD repeats are required for
interaction with other subunits of the FA complex.
Length = 292
Score = 27.8 bits (62), Expect = 9.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 210 FLAVARSLGDFWSYNSELD--TFVVSPEP 236
FL + SL +F+ E+D +V+ PE
Sbjct: 183 FLQLLESLEEFYDNLDEIDELCWVLEPEK 211
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.423
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,875,386
Number of extensions: 1674531
Number of successful extensions: 1475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1451
Number of HSP's successfully gapped: 23
Length of query: 348
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 250
Effective length of database: 6,590,910
Effective search space: 1647727500
Effective search space used: 1647727500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)