RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy605
(348 letters)
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 274 bits (703), Expect = 5e-91
Identities = 82/334 (24%), Positives = 141/334 (42%), Gaps = 47/334 (14%)
Query: 7 NLRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKEHLLDS 66
+ GGRK+ ED F++ Q +D AFFG+FDG G A+ K+ ++
Sbjct: 21 AFDAAIFTDIGGRKHQEDRFTLCPQLVPGRDDC--AFFGVFDGTVGDFASENVKDLVVPQ 78
Query: 67 IVQQKSFWSDND----------------DDVLHAIHEGYINTHQAMWKDQANWQRTQSGL 110
++ ++ + + A+ + Y N + K
Sbjct: 79 LISSPAWQEVTEMLRSDVPATEVDEKLPQLLDQAVDDMYKNADNELVKMCEQLN------ 132
Query: 111 PSTSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRI 170
+ +T+ A + K + VGH+GDS + +G + N C LT +HKP+ P E RI
Sbjct: 133 KDYASSTSVTAVLAKGFVAVGHLGDSRIAMGVETPN--GLNCEFLTVDHKPDMPHEKLRI 190
Query: 171 TKAGGKVVRKNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTF 230
+ GG V N+P I R + ++ L +R+ G +L +
Sbjct: 191 MRNGGSVEYL----HNHNNKPFIRGGDFSFRKSRGEQPMQLQYSRAFGGK-----DLKMY 241
Query: 231 VVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWI 290
+S +PDV V+ + T QH+ +I TDGLW+++SA AV+I
Sbjct: 242 GLSNQPDVRVVRV-TPQHRVMILATDGLWDVMSAAQAVEIAMQARQEGR----------- 289
Query: 291 NPSKCLVDEAIEKWRNSRTRADNTSVVTLLIDPP 324
NP++ LV+ + + ++ ADN + +T+
Sbjct: 290 NPAQALVEMTLAEQQSRNQSADNITAMTVFFKKT 323
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 218 bits (557), Expect = 2e-68
Identities = 86/338 (25%), Positives = 125/338 (36%), Gaps = 56/338 (16%)
Query: 2 SGIGVNLRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKE 61
G G LR QG R MED + +FF ++DGH G + A Y E
Sbjct: 16 QGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESW--SFFAVYDGHAGSQVAKYCCE 73
Query: 62 HLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVA 121
HLLD I + F + + G + + + SG+TA
Sbjct: 74 HLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVM-SEKKHGADRSGSTAVGV 132
Query: 122 FIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVV--R 179
I Y + GDS +L ++ K T++HKP P E +RI AGG V+ R
Sbjct: 133 LISPQHTYFINCGDSRGLLC------RNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQR 186
Query: 180 KNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFW---SYNSELDTFVVSPEP 236
NG LAV+R+LGDF + +VSPEP
Sbjct: 187 VNGS---------------------------LAVSRALGDFDYKCVHGKGPTEQLVSPEP 219
Query: 237 DVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCL 296
+V IE + +I DG+W+++ ++ D V + E +
Sbjct: 220 EVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKV--------CNEV 271
Query: 297 VDEAIEKWRNSRTRADNTSV--VTLLIDPPGPPPRPKR 332
VD + + SR DN SV + P P K+
Sbjct: 272 VDTCLY--KGSR---DNMSVILICFPNAPKVSPEAVKK 304
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 208 bits (532), Expect = 6e-66
Identities = 77/307 (25%), Positives = 123/307 (40%), Gaps = 64/307 (20%)
Query: 13 HCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKEHLLDSIVQQKS 72
G RK ED F A E +F ++DGHGG AA + H+ I+
Sbjct: 13 ASQIGKRKENEDRFDFAQ------LTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLP 66
Query: 73 FWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAFIMKS-KIYVG 131
+ + + ++ +A + + TSGTTATVA + ++ V
Sbjct: 67 KEKNLET----LLTLAFLEIDKAFSSH---ARLSADATLLTSGTTATVALLRDGIELVVA 119
Query: 132 HVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVV-RKNGVPRVVWNR 190
VGDS +L + K ++LT +H PE +E +RI K GG V G P V
Sbjct: 120 SVGDSRAILC------RKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGR- 172
Query: 191 PKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTFVVSPEPDVGVIEMDTAQHKC 250
LA+ RS+GD +L T V EP+ I++ A
Sbjct: 173 --------------------LAMTRSIGDL-----DLKTSGVIAEPETKRIKLHHADDSF 207
Query: 251 LIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVDEAIEKWRNSRTR 310
L+ TDG+ M+++Q+ D V+ + A + + ++AI+ +
Sbjct: 208 LVLTTDGINFMVNSQEICDFVN----QCHDPNEA--------AHAVTEQAIQ--YGTE-- 251
Query: 311 ADNTSVV 317
DN++ V
Sbjct: 252 -DNSTAV 257
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 208 bits (530), Expect = 3e-65
Identities = 85/340 (25%), Positives = 130/340 (38%), Gaps = 68/340 (20%)
Query: 2 SGIGVNLRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKE 61
G G LR QG R MED + D +FF ++DGH G A Y
Sbjct: 18 HGAGNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDW--SFFAVYDGHAGSRVANYCST 75
Query: 62 HLLDSIVQQKSFWSD---------NDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPS 112
HLL+ I + F + + ++V + I G++ + M
Sbjct: 76 HLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNG-----MD 130
Query: 113 TSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITK 172
SG+TA I IY + GDS VL ++ + T++HKP P E +RI
Sbjct: 131 RSGSTAVGVMISPKHIYFINCGDSRAVLY------RNGQVCFSTQDHKPCNPREKERIQN 184
Query: 173 AGGKVV--RKNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFW---SYNSEL 227
AGG V+ R NG LAV+R+LGD+
Sbjct: 185 AGGSVMIQRVNGS---------------------------LAVSRALGDYDYKCVDGKGP 217
Query: 228 DTFVVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSN 287
+VSPEP+V I + + +I DG+W+++S ++ + V ++ E
Sbjct: 218 TEQLVSPEPEVYEILR-AEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENV--- 273
Query: 288 NWINPSKCLVDEAIEKWRNSRTRADNTSVVTLLIDPPGPP 327
+VD + + SR DN S+V + G
Sbjct: 274 -----CNWVVDTCLH--KGSR---DNMSIVLVCFSNEGHH 303
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 209 bits (533), Expect = 9e-65
Identities = 79/323 (24%), Positives = 126/323 (39%), Gaps = 64/323 (19%)
Query: 7 NLRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKEHLLDS 66
V G RK ED F A E +F ++DGHGG AA + H+
Sbjct: 121 LENVGCASQIGKRKENEDRFDFAQ------LTDEVLYFAVYDGHGGPAAADFCHTHMEKC 174
Query: 67 IVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAFIMKS 126
I+ + + + ++ +A + + TSGTTATVA +
Sbjct: 175 IMDLLPKEKNLET----LLTLAFLEIDKAFSSH---ARLSADATLLTSGTTATVALLRDG 227
Query: 127 -KIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVV-RKNGVP 184
++ V VGDS +L + K ++LT +H PE +E +RI K GG V G P
Sbjct: 228 IELVVASVGDSRAILC------RKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQP 281
Query: 185 RVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTFVVSPEPDVGVIEMD 244
V LA+ RS+GD +L T V EP+ I++
Sbjct: 282 HVNGR---------------------LAMTRSIGDL-----DLKTSGVIAEPETKRIKLH 315
Query: 245 TAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVDEAIEKW 304
A L+ TDG+ M+++Q+ D V+ + A + + ++AI+
Sbjct: 316 HADDSFLVLTTDGINFMVNSQEICDFVN----QCHDPNEA--------AHAVTEQAIQ-- 361
Query: 305 RNSRTRADNTSVVTLLIDPPGPP 327
+ DN++ V + G
Sbjct: 362 YGTE---DNSTAVVVPFGAWGKY 381
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 204 bits (521), Expect = 4e-64
Identities = 72/332 (21%), Positives = 134/332 (40%), Gaps = 65/332 (19%)
Query: 2 SGIGVNLRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKE 61
L QG R ED + +F+D + +FF ++DGHGG E A Y
Sbjct: 17 DESNEFLASGSSSMQGWRISQEDAHNCI----LNFDD-QCSFFAVYDGHGGAEVAQYCSL 71
Query: 62 HLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQA---------NWQRTQSGLPS 112
HL + +++ + A+ E ++ + +++ + + +
Sbjct: 72 HLPTFLKTVEAYGR---KEFEKALKEAFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGK 128
Query: 113 TSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITK 172
SG TA VA + +YV + GDS V+ ++ K LE++ +HKPE E +RI K
Sbjct: 129 DSGCTAVVALLHGKDLYVANAGDSRCVVC------RNGKALEMSFDHKPEDTVEYQRIEK 182
Query: 173 AGGKVV---RKNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFW---SYNSE 226
AGG+V R NG L ++R++GD + +
Sbjct: 183 AGGRVTLDGRVNGG---------------------------LNLSRAIGDHGYKMNKSLP 215
Query: 227 LDTFVVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQS 286
+ ++S PD+ I + + + ++ DG+WN ++++ V V + ++++
Sbjct: 216 AEEQMISALPDIEKITV-GPEDEFMVLACDGIWNFMTSEQVVQFVQ-ERINKPGMKLSKI 273
Query: 287 NNWINPSKCLVDEAIEKW-RNSRTRADNTSVV 317
+ L D + R T DN + +
Sbjct: 274 ------CEELFDHCLAPHTRGDGTGCDNMTAI 299
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 199 bits (506), Expect = 1e-60
Identities = 52/389 (13%), Positives = 116/389 (29%), Gaps = 66/389 (16%)
Query: 7 NLRVTGHCNQGGRKYMEDMFSVAYQQTED-----FNDLEYAFFGIFDGHGGVEAATYAKE 61
V N+ + ED ++ +G+F+G+ G + +
Sbjct: 26 LSGVGSASNRSYSADGKG---TESHPPEDSWLKFRSENNCFLYGVFNGYDGNRVTNFVAQ 82
Query: 62 HLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWK----------------------- 98
L ++ + + DV + + + ++ +
Sbjct: 83 RLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQH 142
Query: 99 ------DQANWQRTQSGLPSTSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKC 152
+ + + G A VA ++ +K+YV +VG + +L + +
Sbjct: 143 QLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVD--GLQV 200
Query: 153 LELTKEHKPECPEEIKRITKAGGKVVRKNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLA 212
+L +H E +E+ R+++ G + V + RR I
Sbjct: 201 TQLNVDHTTENEDELFRLSQLGLDAGKIKQVGIICGQ-------ESTRR------IGDYK 247
Query: 213 VARSLGDFWSYNSELDTFVVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVH 272
V D ++ + + EP++ + L+ ++GL+ L A +
Sbjct: 248 VKYGYTDIDLLSA-AKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALEAAHGPGQAN 306
Query: 273 FTEVRNEQTEMAQSNNWINPSKCLVDEAIEKW----------RNSRTRADNTSVVTLLID 322
TE A+ + ++ +VD R ++ +++
Sbjct: 307 QEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFG 366
Query: 323 PP---GPPPRPKRFDRGNCNCYGLIVPSY 348
P P P Y + VP
Sbjct: 367 YPLGEMSQPTPSPAPAAGGRVYPVSVPYS 395
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 196 bits (499), Expect = 3e-60
Identities = 79/360 (21%), Positives = 135/360 (37%), Gaps = 83/360 (23%)
Query: 13 HCNQGGRKYMEDMFSVAY---------------QQTEDFNDLEYAFFGIFDGHGGVEAAT 57
QG R MED F+V+ + L FFG++DGHGG + A
Sbjct: 19 VSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVAD 78
Query: 58 YAKEHLLDSIVQQKSFWSDN----------DDDVLHAIHEGYINTHQAMWKDQANWQRT- 106
Y ++ L ++ ++ D ++ +
Sbjct: 79 YCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGS 138
Query: 107 -----QSGLPSTSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKP 161
++ T G+TA VA + S I V + GDS VL + + + L+ +HKP
Sbjct: 139 SDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLF------RGKEAMPLSVDHKP 192
Query: 162 ECPEEIKRITKAGGKVVRKNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFW 221
+ +E RI AGGKV++ G RV LA++RS+GD
Sbjct: 193 DREDEYARIENAGGKVIQWQG-ARVFGV---------------------LAMSRSIGDR- 229
Query: 222 SYNSELDTFVVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVH--------- 272
L +V PEP+V + + + +CLI +DGLW++++ Q+ +I
Sbjct: 230 ----YLKPYV-IPEPEVTFMPR-SREDECLILASDGLWDVMNNQEVCEIARRRILMWHKK 283
Query: 273 FTEVRNEQTEMAQSNNWINPSKCLVDEAIEKWRNSRTRADNTSVVTLLID-PPGPPPRPK 331
+ + L A++ + S+ DN S++ +ID + +
Sbjct: 284 NGAPPLAERGKGIDPACQAAADYLSMLALQ--KGSK---DNISII--VIDLKAQRKFKTR 336
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 193 bits (492), Expect = 1e-59
Identities = 83/356 (23%), Positives = 139/356 (39%), Gaps = 83/356 (23%)
Query: 8 LRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDL----------EYAFFGIFDGHGGVEAAT 57
G R MED S + + + FFG++DGHGG + A
Sbjct: 9 PLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVAN 68
Query: 58 YAKEHLLDSIVQQ----KSFWSDND---DDVLHAIHEGYINTHQAMWKDQANWQRTQSGL 110
Y +E + ++ ++ K SD D + A+ ++ + +S
Sbjct: 69 YCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEI----------ESVA 118
Query: 111 PSTSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRI 170
P T G+T+ VA + S I+V + GDS VL L L+ +HKP+ +E RI
Sbjct: 119 PETVGSTSVVAVVFPSHIFVANCGDSRAVLCRGK------TALPLSVDHKPDREDEAARI 172
Query: 171 TKAGGKVVRKNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTF 230
AGGKV++ NG RV LA++RS+GD L
Sbjct: 173 EAAGGKVIQWNG-ARVFGV---------------------LAMSRSIGDR-----YLKPS 205
Query: 231 VVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWI 290
+ P+P+V ++ + CLI +DG+W++++ ++A ++ + + +
Sbjct: 206 I-IPDPEVTAVKR-VKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASL 263
Query: 291 NP---------------SKCLVDEAIEKWRNSRTRADNTSV-VTLLIDPPGPPPRP 330
++ L AI+ R S+ DN SV V L +P
Sbjct: 264 LADERRKEGKDPAAMSAAEYLSKLAIQ--RGSK---DNISVVVVDLKPRRKLKSKP 314
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 179 bits (454), Expect = 1e-53
Identities = 56/360 (15%), Positives = 119/360 (33%), Gaps = 67/360 (18%)
Query: 2 SGIGVNLRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKE 61
+G+G + + + G R + + +D + + I GH GV A A +
Sbjct: 15 TGVGEAINQI-YKDDGRRCEGYESRDK---KCLCISDNNTSLYAILSGHNGVTVAENALQ 70
Query: 62 HLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPS--------- 112
+ ++ + + D+ V I + +++ + + T++ +
Sbjct: 71 EMAAELLLGQLNVCNTDEAVKELIRQSFMSVEKGYFDSINPHVATKTAIQLHLSADGMNQ 130
Query: 113 ---------------------TSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWK 151
+ G++A +A I +S +Y+G++G+ +L DE+D +
Sbjct: 131 YEISQQFENVLQKLDSLNNALSVGSSAVLALIHRSHLYLGNIGNCRALLCKTDEHD-TLT 189
Query: 152 CLELTKEHKPECPEEIKRITKAGGKVVRKNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFL 211
+L+ +H EE R+ + G GVP R IG+
Sbjct: 190 VTQLSVDHNLLNAEEAARLFRLGLMAQNFEGVPLYST-RC-IGN---------------Y 232
Query: 212 AVARSLGDFWSYNSELDTFVVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIV 271
D +S V EP++ T + L+ + GL L D
Sbjct: 233 LGKAGYKDCNFLSS-ATAEPVIFEPEIVGGIQITPACRFLVLMSSGLCRALHEIFPGDAS 291
Query: 272 HFTE--VRNEQTEMAQSNNWINPSKCLVDEAIEKWRNS------------RTRADNTSVV 317
VR E + ++ +V ++ ++ D+ +++
Sbjct: 292 TGNRELVRMISEEFQNQSTLGGVAQSVVHRIVQAHHDTYMQLVEEHRSVTFNSRDDVTLL 351
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 159 bits (404), Expect = 5e-46
Identities = 50/362 (13%), Positives = 95/362 (26%), Gaps = 81/362 (22%)
Query: 13 HCNQGGRKYMEDMFSVAYQQTEDF--NDLEYAFFGIFDGHGGVEAATYAKEHLLDSIVQQ 70
++ R E S E E +FDG G +A + +++++ +
Sbjct: 18 ATSRNRRPTSESPHSDDVVVVEGMLRGRPETRVHAMFDGFQGRHSAMWLAQNVMNYLNDL 77
Query: 71 KSF---------------------------------WSDNDDDVLHAIHEGYINTHQAMW 97
+ + + + +
Sbjct: 78 RDVNEEEITRQFERMDGDLRAANLPGGSSALIIFVRYEKKPTEARVVGRQIVPEGAKEFT 137
Query: 98 KDQANWQRTQSGLPSTSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTK 157
+ + + A I+V +G+S VL + L+
Sbjct: 138 SVAEALGGPLMPVVAMNFRRDPRAAKGIYTIHVASLGNSRCVLK------SGRTAIHLST 191
Query: 158 EHKPECPEEIKRITKAGGKVVRKNGVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSL 217
H +E R+ AGG NG + G + + R+
Sbjct: 192 PHTASSHKERHRVQAAGGVFTTVNGELLL---------GG------------VVPMTRAF 230
Query: 218 GDFW---SYNSELDTFVVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFT 274
G F +L +VS PDV ++ GT G + + A+
Sbjct: 231 GSFDFKKGGQGKLQQDLVSAVPDVTTFFAY--PGDDIVAGTAGAFAHFRSHAAIAAAIAL 288
Query: 275 EVRNEQTEMAQSNNWINPSKCLVDEAIEKWRNSRTRADNTSVVTLLIDPPGPPPRPKRFD 334
+ +T + +K +V A R N S + P R ++
Sbjct: 289 YPVSPETVLD-------AAKAMVVNAKR--RKVT---KNISTF--VRHLPESRTRSQKML 334
Query: 335 RG 336
G
Sbjct: 335 EG 336
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 149 bits (378), Expect = 3e-42
Identities = 67/353 (18%), Positives = 105/353 (29%), Gaps = 96/353 (27%)
Query: 16 QGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKEHLLDSIVQQKSFWS 75
G R ED V+ T + +FDGH G + Y +H + + F
Sbjct: 21 LGRRPTDEDAILVSAPAT---SRPNVRIKAVFDGHAGEATSQYCAKHAAKHLGKLSEFTF 77
Query: 76 DN--------------------------------------------DDDVLHAIHEGYIN 91
+ V A E ++
Sbjct: 78 AEVKKACLSLDAEIIRKLGPKHVAGSTGIIVAIERLSAPVVENVVGREIVPRAHEETFVP 137
Query: 92 THQAMWKDQANWQRTQSGLPSTSGTTATVAFIMKS-KIYVGHVGDSMLVLGYQDENDKSW 150
+ + +++ G S + ++GDS L + D
Sbjct: 138 LEKLIQEEEEAEHPELVGRYPRVPDVQQKTIPAGSFLVTAINIGDSRATLIHSDG----- 192
Query: 151 KCLELTKEHKPECPEEIKRITKAGGKVVRKNGVPRVVWNRPKIGHKGPVRRSTAFDEIPF 210
L+K+HKP P E RI KAGG V VPRV
Sbjct: 193 GLTRLSKDHKPNHPTEASRIEKAGGSVET-FDVPRVDGV--------------------- 230
Query: 211 LAVARSLGDFW---SYNSELDTFVVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDA 267
LA++R+ GD + N + V PDV L+ DG++ A
Sbjct: 231 LALSRAFGDSDFKMNPNLPPEEQKVIAVPDVRQFYAL--SSDLLLLACDGVYEPSGMDWA 288
Query: 268 V--DIVHFTEVRNEQT-EMAQSNNWINPSKCLVDEAIEKWRNSRTRADNTSVV 317
D+ R++ E + ++D A + NS+ DN SV+
Sbjct: 289 YVRDLTVAEMQRSKGDLEEV--------AARVMDYAYD--MNSQ---DNISVM 328
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 120 bits (301), Expect = 1e-30
Identities = 60/385 (15%), Positives = 109/385 (28%), Gaps = 93/385 (24%)
Query: 14 CNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKEHL---------- 63
+ED S G+FDGH G + E L
Sbjct: 44 NRLPANAPIEDRRSATTCLQTR-----GMLLGVFDGHAGCACSQAVSERLFYYIAVSLLP 98
Query: 64 ----LDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAM----------------------- 96
L+ +S + H Y + +
Sbjct: 99 HETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLNTGESAD 158
Query: 97 -----------------------WKDQANWQRTQSGLPSTSGTTATVAFIMKSKIYVGHV 133
D ++ + SG TA VA + ++V +
Sbjct: 159 IDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANT 218
Query: 134 GDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITK-----AGGKVVRKN------- 181
GDS +LG Q+E+ W + L+ +H + E++R+ VV+++
Sbjct: 219 GDSRAMLGVQEEDGS-WSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLM 277
Query: 182 -----GVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTFVVSPEP 236
G + W+ + D++ + + ++ EP
Sbjct: 278 PFRAFGDVKFKWSI----DLQKRVIESGPDQLNDNEYTKFIPPN-----YHTPPYLTAEP 328
Query: 237 DVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCL 296
+V + Q K L+ TDGLW + QD V IV + + +
Sbjct: 329 EVTYHRL-RPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQM 387
Query: 297 VDEAIEKWRNSRTRADNTSVVTLLI 321
E+ + ++ + T LI
Sbjct: 388 HGLLTERRAKMSSVFEDQNAATHLI 412
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 43.4 bits (103), Expect = 4e-05
Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 20/134 (14%)
Query: 8 LRVTGHCNQGG-RKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVE----AATYAKEH 62
+ ++ + G R +D + N + DG GG A+
Sbjct: 6 MEISLLTDIGQRRSNNQDFINQFE------NKAGVPLIILADGMGGHRAGNIASEMTVTD 59
Query: 63 LLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAF 122
L + ++ + ++ ++ + G+ GTT
Sbjct: 60 LGSDWAET---DFSELSEIRDWMLVSIETENRKIY--ELGQSDDYKGM----GTTIEAVA 110
Query: 123 IMKSKIYVGHVGDS 136
I+ I HVGDS
Sbjct: 111 IVGDNIIFAHVGDS 124
Score = 27.6 bits (62), Expect = 5.4
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 17/86 (19%)
Query: 232 VSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWIN 291
+ + + + L+ +DGL NMLS D ++ T+ + + Q
Sbjct: 173 QANPVEPDLGVHLLEEGDYLVVNSDGLTNMLSNADIATVL--TQEKTLD-DKNQD----- 224
Query: 292 PSKCLVDEAIEKWRNSRTRADNTSVV 317
L+ A R DN +V
Sbjct: 225 ----LITLANH--RGGL---DNITVA 241
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 43.3 bits (103), Expect = 5e-05
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 34 EDFNDLEYAFFGIFDGHGGVEAATYAKEHLLDSIVQQKSFWSDNDDDVLHAIHEGYINTH 93
ED + DG GG A A + ++ ++ + D+L + +
Sbjct: 21 EDSVYAGARLLALADGMGGHAAGEVASQLVIAALAHL--DDDEPGGDLLAKLDAAVRAGN 78
Query: 94 QAMWKDQANWQRTQSGLPSTSGTTATVAFIMKSKIYVGHVGDS 136
A+ Q + G+ GTT T +++ + H+GDS
Sbjct: 79 SAIA-AQVEMEPDLEGM----GTTLTAILFAGNRLGLVHIGDS 116
Score = 26.8 bits (60), Expect = 8.8
Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 32/103 (31%)
Query: 215 RSLGDFWSYNSELDTFVVSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFT 274
R+L E + D + +DGL + +S + ++ +
Sbjct: 161 RALTGH---EVEPTLTMREARAG------DR-----YLLCSDGLSDPVSDETILEALQ-- 204
Query: 275 EVRNEQTEMAQSNNWINPSKCLVDEAIEKWRNSRTRADNTSVV 317
E E A L++ A DN +VV
Sbjct: 205 --IPEVAESAHR---------LIELA-----LRGGGPDNVTVV 231
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 42.2 bits (100), Expect = 1e-04
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 49 GHGGVEAATYAKEHLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQS 108
G A+ A + L + + D +L A+ + + ++ + + T S
Sbjct: 40 ARGHH-ASATALKTLSAGFAA-----APDRDGLLEAVQQ----ANLRVF-ELLGDEPTVS 88
Query: 109 GLPSTSGTTATVAFIM-KSKIYVGHVGDS 136
G + TA F + V ++GDS
Sbjct: 89 G----TTLTAVAVFEPGQGGPLVVNIGDS 113
Score = 26.8 bits (60), Expect = 8.8
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 18/86 (20%)
Query: 232 VSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWIN 291
+ P V +D L+ +DGL+ VD + +
Sbjct: 162 IGPHIGPDVFGIDCGPGDRLLISSDGLFAAADEALIVDAAT----SPDPQVAVRR----- 212
Query: 292 PSKCLVDEAIEKWRNSRTRADNTSVV 317
LV+ A N +DNT+VV
Sbjct: 213 ----LVEVA-----NDAGGSDNTTVV 229
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 40.3 bits (95), Expect = 4e-04
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 49 GH-GGVEAATYAKEHLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQ 107
GH GG EA+ A +H+ + D D + + + ++ + A+ +Q +
Sbjct: 38 GHAGGEEASRLAVDHIRQYLETH---LEDLQHDPVTLLRQAFLAANHAIV-EQQRQNSAR 93
Query: 108 SGLPSTSGTTATVAFIMK--SKIYVGHVGDS 136
+ + GTTA V + + + + HVGDS
Sbjct: 94 ADM----GTTAVVILLDEKGDRAWCAHVGDS 120
Score = 27.2 bits (61), Expect = 7.3
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 18/86 (20%)
Query: 232 VSPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWIN 291
+ + +D L+ +DGL L+ + + A +
Sbjct: 169 REDLSQIDIQPIDLEPGDRLLLCSDGLTEELTDDVISIYLS----EPNVQKAAAA----- 219
Query: 292 PSKCLVDEAIEKWRNSRTRADNTSVV 317
LVD A R DN +VV
Sbjct: 220 ----LVDAAKT--HGGR---DNVTVV 236
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 39.1 bits (92), Expect = 0.001
Identities = 20/109 (18%), Positives = 30/109 (27%), Gaps = 23/109 (21%)
Query: 34 EDFNDLEYAFFGIFDG---H-GGVEAATYAKEHLLDSIVQQKSFWSDNDDDVLHAIHEGY 89
+ A+ + DG G EAA A + + D L A+
Sbjct: 3 AVGTGGDKAYCVVVDGMGGMIRGDEAAQRALSASVGVL--------DAGGSPLDAVLA-- 52
Query: 90 INTHQAMWKDQANWQRTQSGLPSTSGTTATVAFIMK--SKIYVGHVGDS 136
A+ A+ G T VA + + VGD
Sbjct: 53 --AQAAVH-RWASQGGILGRT----GATMAVAAVNLRDGTLEWASVGDC 94
Score = 30.7 bits (70), Expect = 0.54
Identities = 8/85 (9%), Positives = 20/85 (23%), Gaps = 19/85 (22%)
Query: 233 SPEPDVGVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINP 292
E + + ++ +DG++ L +
Sbjct: 142 LTEISTSEAPLPLEAGEGVLVVSDGVYRSLHEDRIAMALSRGSDARG------------- 188
Query: 293 SKCLVDEAIEKWRNSRTRADNTSVV 317
++ E R DN ++
Sbjct: 189 ---ILQEVE---AQGRPYQDNATLA 207
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 45/318 (14%), Positives = 87/318 (27%), Gaps = 100/318 (31%)
Query: 46 IFDGHGGVEAATYAKEHLLDSIVQQKS----FW-----SDNDDDVLHAIHEGYINTHQAM 96
+ DG G A + L VQ K FW ++ + VL + + +Q
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL---YQID 210
Query: 97 WKDQANWQRTQSGLPSTSGTTATVAFIMKSKIYVGHVGDSMLVLGYQDE--NDKSWK--- 151
+ + + A + ++KSK Y + +LVL N K+W
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCLLVL---LNVQNAKAWNAFN 263
Query: 152 --C--LELTKEHKPECPEEIKRITKAGGKVVRKNGVPRVVWNRP-------------KIG 194
C L T+ K++T + + + +
Sbjct: 264 LSCKILLTTRF---------KQVTDFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 195 HKGPVRRSTAFDEIPFLA--VARSLGDF---WSY---------NSELDTFVVSPEPDVGV 240
+ P +A S+ D W + +++ + EP
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--- 369
Query: 241 IEMDTAQHKCLIFGTDG---------LWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWIN 291
E + +F +W + D + +V+ ++
Sbjct: 370 -EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN---------KLH------- 412
Query: 292 PSKCLVDEAIEKWRNSRT 309
L +EK T
Sbjct: 413 -KYSL----VEKQPKEST 425
Score = 37.5 bits (86), Expect = 0.006
Identities = 34/248 (13%), Positives = 72/248 (29%), Gaps = 59/248 (23%)
Query: 138 LVLGYQDENDKSWKCLELTKEHKPE-CPEEIKRITKAGGKVVRKNGVPRVVW---NRPKI 193
++ ++D ++ C ++ K EEI I + +G R+ W ++ +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD---AVSGTLRLFWTLLSKQEE 77
Query: 194 GHKGPVRRSTAFDEIPFLAVA-------RSLGDFWSYNSELDTFVVSPEP----DVGVIE 242
+ V + FL S+ Y + D + +V ++
Sbjct: 78 MVQKFVEEVLRIN-YKFLMSPIKTEQRQPSM-MTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 243 MDTAQHKCLIFGTDGLWNMLSAQDAVDI-VH----------FTEV-RNEQTEMAQSNN-- 288
+ L L + A ++ + +V + + +
Sbjct: 136 PYLKLRQAL----------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 289 WINPSKCLVDEAI-EKWRNSRTRADNTSVVTLLIDPPGPPP--------RPKRF--DRGN 337
W+N C E + E + + D T D +R +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 338 CNCYGLIV 345
NC L+V
Sbjct: 244 ENC--LLV 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.006
Identities = 50/294 (17%), Positives = 90/294 (30%), Gaps = 107/294 (36%)
Query: 16 QGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKEHLLDSIVQQKSFWS 75
+ G++ E+ ++ ++ D F + EH +
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN------------EHSTSYT------FR 1720
Query: 76 DNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAF--IMKSK------ 127
+ +L A T Q TQ L T A +KSK
Sbjct: 1721 S-EKGLLSA-------T-----------QFTQPAL-----TLMEKAAFEDLKSKGLIPAD 1756
Query: 128 -IYVGH-VGD-SML-----VLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVVR 179
+ GH +G+ + L V+ + +E+ R G +
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIES-------LVEVVF----------YR-----GMTM- 1793
Query: 180 KNGVPRVVWNRPKIG----HKGPVRRSTAFDEIPFLA--VARSLGDFWS---YNSELDTF 230
+ VPR R G + G V S + + + ++ V + G YN E +
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Query: 231 VVSPEPDVGVIE-MDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTE-VRNEQTE 282
V + G + +DT L N + Q +DI+ + + E+ E
Sbjct: 1854 VAA-----GDLRALDTVT-NVL--------NFIKLQ-KIDIIELQKSLSLEEVE 1892
Score = 37.3 bits (86), Expect = 0.008
Identities = 38/245 (15%), Positives = 75/245 (30%), Gaps = 92/245 (37%)
Query: 94 QAMWKDQANWQRTQS-GLPSTSG------TTATVAFIMKS--KIYVGHVGDSMLVLGYQD 144
Q +W ++A+ + G S T+ F + +I + +M+ D
Sbjct: 1643 QDVW-NRADNHFKDTYGF-SILDIVINNPVNLTIHFGGEKGKRIRENY--SAMIFETIVD 1698
Query: 145 ENDKSWKCLELTKEHKPEC----PEEIKRIT-----------KAGGKVVRKNGVPRVVWN 189
K+ K + EH + + T KA + ++ G+ + +
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGL--IPAD 1756
Query: 190 RPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTFVVSPEPDVGVIEMDTAQHK 249
GH SLG++ + L S A
Sbjct: 1757 ATFAGH--------------------SLGEY----AAL----AS-----------LA--- 1774
Query: 250 CLIFGTDGLWNMLSAQDAVDIVH----FTEVRNEQTEMAQSNNW---INPSKC---LVDE 299
+++S + V++V +V + E+ +SN INP + E
Sbjct: 1775 ----------DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 300 AIEKW 304
A++
Sbjct: 1825 ALQYV 1829
Score = 30.8 bits (69), Expect = 0.90
Identities = 60/394 (15%), Positives = 111/394 (28%), Gaps = 125/394 (31%)
Query: 24 DMFSVAYQQTEDFND------------------LEYA--FFGIFDGHGGVEAATYAKEHL 63
F +A Q E FN E F G + + + +
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-YVSSLVEPSKVGQFDQV 83
Query: 64 LDSIVQ--QKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRT------QSGLPSTSG 115
L+ + + + ND +HA+ + + + + P
Sbjct: 84 LNLCLTEFENCYLEGND---IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 116 TTATVAFIM-----KSKIYVGHVGDSMLVLGYQDENDKSWKCL-ELTKEHKPECPEEIKR 169
+ + A +++ + G Q D ++ L +L + + + IK
Sbjct: 141 SNS--ALFRAVGEGNAQLV--------AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 170 ITKAGGKVVRKN---------GVPRVVW-NRPKIGHKGPVRRSTAFDEIP---------F 210
+ +++R G+ + W P S P +
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHY 249
Query: 211 LAVARSLG----DFWSYNSELDTFVVSPEPDVGVIEMDTAQHKCLIFGTDGLWNML--SA 264
+ A+ LG + SY T G++ TA + W S
Sbjct: 250 VVTAKLLGFTPGELRSYLKGA-TGHSQ-----GLV---TA----VAIAETDSWESFFVSV 296
Query: 265 QDAVDIVHFTEVRNEQT---------EMAQS--NNWINPS---------KCLVDEAIEKW 304
+ A+ ++ F VR + + S NN PS + V + + K
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK- 355
Query: 305 RNSRTRAD--------NTS---VVTLLIDPPGPP 327
NS A N + VV+ GPP
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVS------GPP 383
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase,
late protein; 1.70A {Enterobacteria phage P21}
Length = 140
Score = 28.8 bits (64), Expect = 1.4
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 148 KSWKCLELTKEHKPECPEEIKRITKAGGKVVR 179
S ++ + ++++R T AGGK +
Sbjct: 91 TSTLLRKINQGDIKGACDQLRRWTYAGGKQWK 122
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria
aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia}
SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Length = 312
Score = 29.6 bits (65), Expect = 1.5
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 7/89 (7%)
Query: 73 FWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAFIMKSKIYVGH 132
+W +++ A + G W + PS T I V
Sbjct: 228 YWQKGREELYEAAYGGS-------WNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVFF 280
Query: 133 VGDSMLVLGYQDENDKSWKCLELTKEHKP 161
+ + +Q + K W + P
Sbjct: 281 QASGVSLQQWQWISGKGWSIGAVVPTGTP 309
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 27.2 bits (60), Expect = 8.7
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 165 EEIKRITKAGGKVVRKNGVPRVVWN-----RPKIGHKGPVRRSTAFDEIPFLAVARSLGD 219
+E++RI + G V+ + ++ R + P A +P L +
Sbjct: 115 QEMQRIIRDGTIVL-------LTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQE 167
Query: 220 FWSYNSELDTFVVSPE 235
E F++ +
Sbjct: 168 NTKRRVEAIPFLLPHD 183
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 8.8
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 299 EAIEKWRNSR 308
E+I KWR +
Sbjct: 85 ESIRKWREEQ 94
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 27.2 bits (61), Expect = 9.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 131 GHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVVR-KNG 182
GH G ++L L Q + T++ E + KRI AG +VV K G
Sbjct: 176 GHSGVTILPLLSQ------VPGVSFTEQ---EVADLTKRIQNAGTEVVEAKAG 219
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 27.1 bits (60), Expect = 9.8
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 10/60 (16%)
Query: 116 TT--ATVAFIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLEL-TKEHKPECPEEIKRITK 172
TT +V + YV V S+ +K + L L K + PE+ I K
Sbjct: 263 TTRDKSVTDSVMGPKYVVPVESSL-------GKEKGLEILSLFVNMKKADLPEQAHSIIK 315
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.423
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,574,481
Number of extensions: 330742
Number of successful extensions: 818
Number of sequences better than 10.0: 1
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 43
Length of query: 348
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 254
Effective length of database: 4,077,219
Effective search space: 1035613626
Effective search space used: 1035613626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)