RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy605
         (348 letters)



>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score =  143 bits (360), Expect = 7e-41
 Identities = 84/329 (25%), Positives = 124/329 (37%), Gaps = 52/329 (15%)

Query: 2   SGIGVNLRVTGHCNQGGRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKE 61
            G G  LR      QG R  MED  +             ++FF ++DGH G + A Y  E
Sbjct: 15  QGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLES--WSFFAVYDGHAGSQVAKYCCE 72

Query: 62  HLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVA 121
           HLLD I   + F        +  +  G       + +        + G    SG+TA   
Sbjct: 73  HLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHG-ADRSGSTAVGV 131

Query: 122 FIMKSKIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVVRKN 181
            I     Y  + GDS  +L          K    T++HKP  P E +RI  AGG      
Sbjct: 132 LISPQHTYFINCGDSRGLLCRN------RKVHFFTQDHKPSNPLEKERIQNAGGS----- 180

Query: 182 GVPRVVWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDF---WSYNSELDTFVVSPEPDV 238
                V  +   G                LAV+R+LGDF     +       +VSPEP+V
Sbjct: 181 -----VMIQRVNGS---------------LAVSRALGDFDYKCVHGKGPTEQLVSPEPEV 220

Query: 239 GVIEMDTAQHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVD 298
             IE      + +I   DG+W+++  ++  D V         + +  +++       +VD
Sbjct: 221 HDIERSEEDDQFIILACDGIWDVMGNEELCDFVR--------SRLEVTDDLEKVCNEVVD 272

Query: 299 EAIEKWRNSRTRADNTSVVTLLIDPPGPP 327
             + K        DN SV+  LI  P  P
Sbjct: 273 TCLYKGSR-----DNMSVI--LICFPNAP 294


>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 68.0 bits (165), Expect = 8e-14
 Identities = 44/311 (14%), Positives = 88/311 (28%), Gaps = 85/311 (27%)

Query: 8   LRVTGHCNQG-GRKYMEDMFSVAYQQTEDFNDLEYAFFGIFDGHGGVEAATYAKEHLLDS 66
           LR     ++G  R   ED      +              + DG GG  A   A + ++ +
Sbjct: 3   LRYAARSDRGLVRANNEDSVYAGAR-----------LLALADGMGGHAAGEVASQLVIAA 51

Query: 67  IVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQRTQSGLPSTSGTTATVAFIMKS 126
           +        +   D+L  +       + A+                  GTT T      +
Sbjct: 52  LAHL--DDDEPGGDLLAKLDAAVRAGNSAIAAQVEMEPD-----LEGMGTTLTAILFAGN 104

Query: 127 KIYVGHVGDSMLVLGYQDENDKSWKCLELTKEHKPECPEEIKRITKAGGKVVRKNGVPRV 186
           ++ + H+GDS   L       +  +  ++TK+      + +                   
Sbjct: 105 RLGLVHIGDSRGYL------LRDGELTQITKDDTFV--QTLVDE---------------- 140

Query: 187 VWNRPKIGHKGPVRRSTAFDEIPFLAVARSLGDFWSYNSELDTFVVSPEPDVGVIEMDTA 246
                     G +    A        + R+L                   +  +   +  
Sbjct: 141 ----------GRITPEEAHSHPQRSLIMRALTGHE--------------VEPTLTMREAR 176

Query: 247 QHKCLIFGTDGLWNMLSAQDAVDIVHFTEVRNEQTEMAQSNNWINPSKCLVDEAIEKWRN 306
                +  +DGL + +S +  ++ +   EV     E A           L++ A+     
Sbjct: 177 AGDRYLLCSDGLSDPVSDETILEALQIPEVA----ESAHR---------LIELALR--GG 221

Query: 307 SRTRADNTSVV 317
                DN +VV
Sbjct: 222 GP---DNVTVV 229


>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase
           subunit F (AhpF), C-terminal domains {Escherichia coli
           [TaxId: 562]}
          Length = 184

 Score = 27.8 bits (60), Expect = 1.6
 Identities = 9/56 (16%), Positives = 15/56 (26%)

Query: 49  GHGGVEAATYAKEHLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKDQANWQ 104
           G  G  AA Y+    + + +  + F     D V    +     T            
Sbjct: 10  GPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH 65


>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide
           chain release factor subunit 1, ERF1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 138

 Score = 27.0 bits (60), Expect = 2.0
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 8/35 (22%)

Query: 298 DEAIEKWRNSRT-------RADNTSVVTLLIDPPG 325
           D  +E W+  +        R + TS+++L+I PP 
Sbjct: 5   DRNVEIWKIKKLIKSLEAARGNGTSMISLII-PPK 38


>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 96

 Score = 25.2 bits (55), Expect = 5.2
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 158 EHKPECPEEIKRITKAGGKVVRKNG 182
            + P     +  +T    + VR+N 
Sbjct: 54  AYTPTDVIGVVSLTNGVTEHVRQNA 78


>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 296

 Score = 25.9 bits (56), Expect = 8.0
 Identities = 16/78 (20%), Positives = 28/78 (35%)

Query: 40  EYAFFGIFDGHGGVEAATYAKEHLLDSIVQQKSFWSDNDDDVLHAIHEGYINTHQAMWKD 99
              F    + HGG   A+Y  ++ + +     S     DDDV   +   Y + +  M K 
Sbjct: 163 TETFVLSANLHGGALVASYPFDNGVQATGALYSRSLTPDDDVFQYLAHTYASRNPNMKKG 222

Query: 100 QANWQRTQSGLPSTSGTT 117
                +       T+G +
Sbjct: 223 DECKNKMNFPNGVTNGYS 240


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0415    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,373,234
Number of extensions: 63358
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 9
Length of query: 348
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,226,816
Effective search space: 321425792
Effective search space used: 321425792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)