BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6052
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 107/283 (37%), Gaps = 25/283 (8%)
Query: 25 NRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIF 84
N + A D+LV + +PF+I + + G LFI F +L SIF
Sbjct: 42 NYFVVSAAAADILVGVLAIPFAI-----AISTGFCAACHGCLFIAC---FVLVLTASSIF 93
Query: 85 QTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPILICAPSYFVFSIREIQIWES 144
L +AI R++AIR P + + + ++L F + + W +
Sbjct: 94 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS--------FAIGLTPMLGWNN 145
Query: 145 GKLEALYQLHLSPLAKENNGLIFSLHFWM-YSVCIKLLPCLVLSVISYYLIGA-LRQASK 202
+ H + +F M Y V C+++ ++ ++G LR
Sbjct: 146 CGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLL--LMLGVYLRIFLA 203
Query: 203 RKHQLKSKSGTPCPQSKVEKRMDRTAHM---LVAVLLLFLITEFPQGILALLSGILGRCF 259
+ QLK P P + + + H L ++ LF + P I+ + C
Sbjct: 204 ARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCS 263
Query: 260 FESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFK 302
+ Y + +L+ N +N +Y R+FR TF ++ +
Sbjct: 264 HAPLWLMYLAI--VLSHTNSVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 107/283 (37%), Gaps = 25/283 (8%)
Query: 25 NRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIF 84
N + LA D+LV + +PF+I + + G LFI F +L SIF
Sbjct: 42 NYFVVSLAAADILVGVLAIPFAI-----TISTGFCAACHGCLFIAC---FVLVLAQSSIF 93
Query: 85 QTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPILICAPSYFVFSIREIQIWES 144
L +AI R++AI P + + + ++L F + + W +
Sbjct: 94 SLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLS--------FAIGLTPMLGWNN 145
Query: 145 GKLEALYQLHLSPLAKENNGLIFSLHFWM-YSVCIKLLPCLVLSVISYYLIGA-LRQASK 202
+ H + +F M Y V C+++ ++ ++G LR +
Sbjct: 146 CGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLL--LMLGVYLRIFAA 203
Query: 203 RKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLL---LFLITEFPQGILALLSGILGRCF 259
+ QLK P P + + + H + + LF + P I+ + C
Sbjct: 204 ARRQLKQMESQPLPGERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCS 263
Query: 260 FESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFK 302
+ Y + +LA N +N +Y R+FR TF ++ +
Sbjct: 264 HAPLWLMYLAI--VLAHTNSVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 107/283 (37%), Gaps = 25/283 (8%)
Query: 25 NRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIF 84
N + LA D+ V + +PF+I + + G LFI F +L SIF
Sbjct: 42 NYFVVSLAAADIAVGVLAIPFAI-----TISTGFCAACHGCLFIAC---FVLVLTQSSIF 93
Query: 85 QTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPILICAPSYFVFSIREIQIWES 144
L +AI R++AIR P + + + ++L F + + W +
Sbjct: 94 SLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS--------FAIGLTPMLGWNN 145
Query: 145 GKLEALYQLHLSPLAKENNGLIFSLHFWM-YSVCIKLLPCLVLSVISYYLIGA-LRQASK 202
+ H + +F M Y V C+++ ++ ++G LR
Sbjct: 146 CGQPKEGKQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLL--LMLGVYLRIFLA 203
Query: 203 RKHQLKSKSGTPCPQSKVEKRMDRTAHM---LVAVLLLFLITEFPQGILALLSGILGRCF 259
+ QLK P P + + + H L ++ LF + P I+ + C
Sbjct: 204 ARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCS 263
Query: 260 FESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFK 302
+ Y + +L+ N +N +Y R+FR TF ++ +
Sbjct: 264 HAPLWLMYLAI--VLSHTNSVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 126/300 (42%), Gaps = 44/300 (14%)
Query: 3 GTQTNLLNI-VVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFT 61
G N L + V + HK+L TP+N IL LAV DL ++ F + ++ YF
Sbjct: 52 GFPINFLTLYVTVQHKKLR-TPLNYILLNLAVADLFMV-----FGGFTTTLYTSLHGYFV 105
Query: 62 YAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYI 121
+ G + F+ L I+++ + LAI R+V + P V ++
Sbjct: 106 F-GPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWV 163
Query: 122 LPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNG----LIFSLHFWMYSVC 177
+ + AP +S R I G + + +P + NN +F +HF
Sbjct: 164 MALACAAPPLVGWS-RYI---PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF------ 213
Query: 178 IKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLL 237
++P +V+ L+ +++A+ ++ + + K EK + R M++ +++
Sbjct: 214 --IIPLIVIFFCYGQLVFTVKEAAAQQQESATT-------QKAEKEVTR---MVIIMVIA 261
Query: 238 FLITEFPQGILALLSGILGRCFFE--SCYQP-YGEVMDILALLNGAINFILYCSMSRQFR 294
FLI P +G+ F SC+ P + + A + N ++Y M++QFR
Sbjct: 262 FLICWLP------YAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFR 315
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 126/300 (42%), Gaps = 44/300 (14%)
Query: 3 GTQTNLLNI-VVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFT 61
G N L + V + HK+L TP+N IL LAV DL ++ F + ++ YF
Sbjct: 52 GFPINFLTLYVTVQHKKLR-TPLNYILLNLAVADLFMV-----FGGFTTTLYTSLHGYFV 105
Query: 62 YAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYI 121
+ G + F+ L I+++ + LAI R+V + P V ++
Sbjct: 106 F-GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWV 163
Query: 122 LPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNG----LIFSLHFWMYSVC 177
+ + AP +S R I G + + +P + NN +F +HF
Sbjct: 164 MALACAAPPLVGWS-RYI---PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF------ 213
Query: 178 IKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLL 237
++P +V+ L+ +++A+ ++ + + K EK + R M++ +++
Sbjct: 214 --IIPLIVIFFCYGQLVFTVKEAAAQQQESATT-------QKAEKEVTR---MVIIMVIA 261
Query: 238 FLITEFPQGILALLSGILGRCFFE--SCYQP-YGEVMDILALLNGAINFILYCSMSRQFR 294
FLI P +G+ F SC+ P + + A + N ++Y M++QFR
Sbjct: 262 FLICWLP------YAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFR 315
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 126/300 (42%), Gaps = 44/300 (14%)
Query: 3 GTQTNLLNI-VVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFT 61
G N L + V + HK+L TP+N IL LAV DL ++ F + ++ YF
Sbjct: 51 GFPINFLTLYVTVQHKKLR-TPLNYILLNLAVADLFMV-----FGGFTTTLYTSLHGYFV 104
Query: 62 YAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYI 121
+ G + F+ L I+++ + LAI R+V + P V ++
Sbjct: 105 F-GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWV 162
Query: 122 LPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNG----LIFSLHFWMYSVC 177
+ + AP +S R I G + + +P + NN +F +HF
Sbjct: 163 MALACAAPPLVGWS-RYI---PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF------ 212
Query: 178 IKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLL 237
++P +V+ L+ +++A+ ++ + + K EK + R M++ +++
Sbjct: 213 --IIPLIVIFFCYGQLVFTVKEAAAQQQESATT-------QKAEKEVTR---MVIIMVIA 260
Query: 238 FLITEFPQGILALLSGILGRCFFE--SCYQP-YGEVMDILALLNGAINFILYCSMSRQFR 294
FLI P +G+ F SC+ P + + A + N ++Y M++QFR
Sbjct: 261 FLICWLP------YAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFR 314
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 44/300 (14%)
Query: 3 GTQTNLLNI-VVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFT 61
G N L + V + HK+L TP+N IL LAV DL ++ F + ++ YF
Sbjct: 52 GFPINFLTLYVTVQHKKLR-TPLNYILLNLAVADLFMV-----FGGFTTTLYTSLHGYFV 105
Query: 62 YAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYI 121
+ G + F+ L I+++ + LAI R+V + P V ++
Sbjct: 106 F-GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWV 163
Query: 122 LPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNG----LIFSLHFWMYSVC 177
+ + AP +S R I G + + +P + NN +F +HF
Sbjct: 164 MALACAAPPLVGWS-RYI---PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF------ 213
Query: 178 IKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLL 237
++P +V+ L+ +++A+ ++ + + K EK + R M++ ++
Sbjct: 214 --IIPLIVIFFCYGQLVFTVKEAAAQQQESATT-------QKAEKEVTR---MVIIYVIA 261
Query: 238 FLITEFPQGILALLSGILGRCFFE--SCYQP-YGEVMDILALLNGAINFILYCSMSRQFR 294
FLI P +G+ F SC+ P + + A + N ++Y M++QFR
Sbjct: 262 FLICWLP------YAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFR 315
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 223 RMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCY-QPYGEVMDILALLNGAI 281
+ + A L A+LL F+IT P I+ L++ F +SC + Y + L +N +
Sbjct: 368 KEKKAAQTLSAILLAFIITWTPYNIMVLVN-----TFCDSCIPKTYWNLGYWLCYINSTV 422
Query: 282 NFILYCSMSRQFRVTFGQL 300
N + Y ++ FR TF L
Sbjct: 423 NPVCYALCNKTFRTTFKTL 441
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 122/315 (38%), Gaps = 47/315 (14%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + E T N +T LA DL++ L VPF H+ K++ T+ G+
Sbjct: 52 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA----AHILMKMW-TF-GNF 105
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPILI 126
+ L T SI +A+ R+ AI P K +L+ +I+ L
Sbjct: 106 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 165
Query: 127 CAPSYFVFSIREIQI-WESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLV 185
S IQ+ W A +Q ++ A+E F+ Y++ ++ V
Sbjct: 166 --------SFLPIQMHW----YRATHQEAINCYAEETCCDFFTNQ--AYAIASSIVSFYV 211
Query: 186 LSVISYYLIGALRQASKRKHQLKSKS-GTPCPQSKVEKRMD-RTAHMLVAVLLLFLITEF 243
VI ++ + Q +KR+ Q KS G Q+ + D RT H L L
Sbjct: 212 PLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHK 271
Query: 244 PQGILALLSGILGRCFFESCYQPY---------------GEV---MDILALLNGAINFIL 285
L ++ G F C+ P+ EV ++ + +N N ++
Sbjct: 272 ALKTLGIIMGT-----FTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 326
Query: 286 YCSMSRQFRVTFGQL 300
YC S FR+ F +L
Sbjct: 327 YCR-SPDFRIAFQEL 340
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 121/315 (38%), Gaps = 47/315 (14%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + E T N +T LA DL++ L VPF H+ K++ T+ G+
Sbjct: 51 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA----AHILMKMW-TF-GNF 104
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPILI 126
+ L T SI +A+ R+ AI P K +L+ +I+ L
Sbjct: 105 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 164
Query: 127 CAPSYFVFSIREIQI-WESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLV 185
S IQ+ W A +Q ++ A E F+ Y++ ++ V
Sbjct: 165 --------SFLPIQMHW----YRATHQEAINCYANETCCDFFTNQ--AYAIASSIVSFYV 210
Query: 186 LSVISYYLIGALRQASKRKHQLKSKS-GTPCPQSKVEKRMD-RTAHMLVAVLLLFLITEF 243
VI ++ + Q +KR+ Q KS G Q+ + D RT H L L
Sbjct: 211 PLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHK 270
Query: 244 PQGILALLSGILGRCFFESCYQPY---------------GEV---MDILALLNGAINFIL 285
L ++ G F C+ P+ EV ++ + +N N ++
Sbjct: 271 ALKTLGIIMGT-----FTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 325
Query: 286 YCSMSRQFRVTFGQL 300
YC S FR+ F +L
Sbjct: 326 YCR-SPDFRIAFQEL 339
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 121/315 (38%), Gaps = 47/315 (14%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + E T N +T LA DL++ L VPF H+ K++ T+ G+
Sbjct: 28 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA----AHILMKMW-TF-GNF 81
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPILI 126
+ L T SI +A+ R+ AI P K +L+ +I+ L
Sbjct: 82 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 141
Query: 127 CAPSYFVFSIREIQI-WESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLV 185
S IQ+ W A +Q ++ A E F+ Y++ ++ V
Sbjct: 142 --------SFLPIQMHW----YRATHQEAINCYANETCCDFFTNQ--AYAIASSIVSFYV 187
Query: 186 LSVISYYLIGALRQASKRKHQLKSKS-GTPCPQSKVEKRMD-RTAHMLVAVLLLFLITEF 243
VI ++ + Q +KR+ Q KS G Q+ + D RT H L L
Sbjct: 188 PLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHK 247
Query: 244 PQGILALLSGILGRCFFESCYQPY---------------GEV---MDILALLNGAINFIL 285
L ++ G F C+ P+ EV ++ + +N N ++
Sbjct: 248 ALKTLGIIMGT-----FTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 302
Query: 286 YCSMSRQFRVTFGQL 300
YC S FR+ F +L
Sbjct: 303 YCR-SPDFRIAFQEL 316
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 122/315 (38%), Gaps = 47/315 (14%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + E T N +T LA DL++ L VPF H+ +K + T+ G+
Sbjct: 200 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA----AHILTKTW-TF-GNF 253
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPILI 126
+ L T SI +A+ R+ AI P K +L+ +I+ L
Sbjct: 254 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 313
Query: 127 CAPSYFVFSIREIQI-WESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLV 185
S IQ+ W A +Q ++ A+E F+ Y++ ++ V
Sbjct: 314 --------SFLPIQMHW----YRATHQEAINCYAEETCCDFFTNQ--AYAIASSIVSFYV 359
Query: 186 LSVISYYLIGALRQASKRKHQLKSKS-GTPCPQSKVEKRMD-RTAHMLVAVLLLFLITEF 243
VI ++ + Q +KR+ Q KS G Q+ + D RT H L L
Sbjct: 360 PLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHK 419
Query: 244 PQGILALLSGILGRCFFESCYQPY---------------GEV---MDILALLNGAINFIL 285
L ++ G F C+ P+ EV ++ + +N N ++
Sbjct: 420 ALKTLGIIMGT-----FTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 474
Query: 286 YCSMSRQFRVTFGQL 300
YC S FR+ F +L
Sbjct: 475 YCR-SPDFRIAFQEL 488
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + E T N +T LA DL++ L VPF H+ K++ T+ G+
Sbjct: 59 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA----AHILMKMW-TF-GNF 112
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPIL 125
+ L T SI+ +A+ R+ AI P K +L+ +I+ L
Sbjct: 113 WCEFWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 171
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 46/301 (15%)
Query: 3 GTQTNLLNI-VVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFT 61
G N L + V + HK+L TP+N IL LAV DL ++ F + ++ YF
Sbjct: 52 GFPINFLTLYVTVQHKKLR-TPLNYILLNLAVADLFMV-----FGGFTTTLYTSLHGYFV 105
Query: 62 YAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYI 121
+ G + F+ L I+++ + LAI R+V + P V ++
Sbjct: 106 F-GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWV 163
Query: 122 LPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNG----LIFSLHFWMYSVC 177
+ + AP +S R I G + + +P + NN +F +HF
Sbjct: 164 MALACAAPPLVGWS-RYI---PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF------ 213
Query: 178 IKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLL 237
++P +V+ L+ +++A+ ++ + + K EK + R M++ +++
Sbjct: 214 --IIPLIVIFFCYGQLVFTVKEAAAQQQESATT-------QKAEKEVTR---MVIIMVIA 261
Query: 238 FLITEFPQGILALLSGILGRCFFESCYQPYGEV-MDILALL---NGAINFILYCSMSRQF 293
FLI P +A F +G + M I A + N ++Y M++QF
Sbjct: 262 FLICWLPYAGVAFY-------IFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQF 314
Query: 294 R 294
R
Sbjct: 315 R 315
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 46/301 (15%)
Query: 3 GTQTNLLNI-VVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFT 61
G N L + V + HK+L TP+N IL LAV DL ++ F + ++ YF
Sbjct: 51 GFPINFLTLYVTVQHKKLR-TPLNYILLNLAVADLFMV-----FGGFTTTLYTSLHGYFV 104
Query: 62 YAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYI 121
+ G + F+ L I+++ + LAI R+V + P V ++
Sbjct: 105 F-GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTWV 162
Query: 122 LPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNG----LIFSLHFWMYSVC 177
+ + AP +S R I G + + +P + NN +F +HF
Sbjct: 163 MALACAAPPLVGWS-RYI---PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF------ 212
Query: 178 IKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLL 237
++P +V+ L+ +++A+ ++ + + K EK + R M++ +++
Sbjct: 213 --IIPLIVIFFCYGQLVFTVKEAAAQQQESATT-------QKAEKEVTR---MVIIMVIA 260
Query: 238 FLITEFPQGILALLSGILGRCFFESCYQPYGEV-MDILALL---NGAINFILYCSMSRQF 293
FLI P +A F +G + M I A + N ++Y M++QF
Sbjct: 261 FLICWLPYAGVAFY-------IFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQF 313
Query: 294 R 294
R
Sbjct: 314 R 314
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 120/295 (40%), Gaps = 35/295 (11%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + E T N +T LA DL++ L VPF H+ +K + T+ G+
Sbjct: 23 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA----AHILTKTW-TF-GNF 76
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPILI 126
+ L T SI +A+ R+ AI P K +L+ +I+ L
Sbjct: 77 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLT 136
Query: 127 CAPSYFVFSIREIQI-WESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLV 185
S IQ+ W A +Q ++ A+E F+ Y++ ++ V
Sbjct: 137 --------SFLPIQMHW----YRATHQEAINCYAEETCCDFFTNQ--AYAIASSIVSFYV 182
Query: 186 LSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQ 245
VI ++ + Q +KR+ Q K C + E + +T +++ L + F
Sbjct: 183 PLVIMVFVYSRVFQEAKRQLQ---KIDKFCLK---EHKALKTLGIIMGTFTLCWLPFFIV 236
Query: 246 GILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQL 300
I+ ++ L R + +++ + +N N ++YC S FR+ F +L
Sbjct: 237 NIVHVIQDNLIR-------KEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQEL 283
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 25 NRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIF 84
N + LA D+ V + +PF+I + + G LFI F +L SIF
Sbjct: 67 NYFVVSLAAADIAVGVLAIPFAI-----TISTGFCAACHGCLFIAC---FVLVLTQSSIF 118
Query: 85 QTLTLAICRHVAIRFP 100
L +AI R++AIR P
Sbjct: 119 SLLAIAIDRYIAIRIP 134
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + E T N +T LA DL++ L VPF H+ K++ T+ G+
Sbjct: 58 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA----AHILMKMW-TF-GNF 111
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPIL 125
+ L T SI +A+ R+ AI P K +L+ +I+ L
Sbjct: 112 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 170
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + E T N +T LA DL++ L VPF H+ K++ T+ G+
Sbjct: 59 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA----AHILMKMW-TF-GNF 112
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPIL 125
+ L T SI +A+ R+ AI P K +L+ +I+ L
Sbjct: 113 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 171
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 198 RQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGR 257
+A + ++ + P EK++ RT ++A+LL F+IT P ++ L++
Sbjct: 360 NRAKRVITTFRTGTWDAYPPPSREKKVTRT---ILAILLAFIITWAPYNVMVLINTFCAP 416
Query: 258 CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQL 300
C + + + L +N IN Y + F+ TF L
Sbjct: 417 CIPNTVWT----IGYWLCYINSTINPACYALCNATFKKTFKHL 455
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 25 NRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIF 84
N + LA D+ V + +PF+I + + G LFI F +L SIF
Sbjct: 57 NYFVVSLAAADIAVGVLAIPFAI-----TISTGFCAACHGCLFIAC---FVLVLTQSSIF 108
Query: 85 QTLTLAICRHVAIRFP 100
L +AI R++AIR P
Sbjct: 109 SLLAIAIDRYIAIRIP 124
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + + T N +T LA DL+V L VPF + VR + GS
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV---VRGTWLW---GSF 82
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHK 102
+ L T SI +AI R++AI P +
Sbjct: 83 LCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFR 118
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + + T N +T LA DL+V L VPF + VR + GS
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLV---VRGTWLW---GSF 82
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHK 102
+ L T SI +AI R++AI P +
Sbjct: 83 LCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFR 118
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+L I + E T N +T LA DL++ L VPF + + +T+ G+
Sbjct: 27 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKM-----WTF-GNF 80
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKXXXXXXXXXXXXXVLVAYILPIL 125
+ L T SI +A+ R+ AI P K +L+ +I+ L
Sbjct: 81 WCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 139
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 226 RTAHMLVAVLLLFLITEFPQGILALLSGILGR--CFFESCYQ--PYGEVMD---ILALLN 278
R ++ AV+L+FL+ P L LL+ L R ESC + G +D IL L+
Sbjct: 211 RAMRVIFAVVLIFLLCWLPYN-LVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLH 269
Query: 279 GAINFILYCSMSRQFRVTF 297
+N I+Y + + FR F
Sbjct: 270 SCLNPIIYAFIGQNFRHGF 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.142 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,343,141
Number of Sequences: 62578
Number of extensions: 296806
Number of successful extensions: 703
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 27
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)