Query psy6052
Match_columns 323
No_of_seqs 234 out of 1350
Neff 11.2
Searched_HMMs 46136
Date Sat Aug 17 01:16:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 2.4E-48 5.1E-53 312.5 12.6 288 2-305 48-337 (423)
2 PHA03234 DNA packaging protein 100.0 7E-44 1.5E-48 298.4 17.9 263 1-303 44-316 (338)
3 KOG4220|consensus 100.0 7.3E-43 1.6E-47 280.4 13.5 285 2-308 43-492 (503)
4 PHA02834 chemokine receptor-li 100.0 5E-41 1.1E-45 281.4 17.7 265 2-305 41-311 (323)
5 PHA03235 DNA packaging protein 100.0 9.7E-41 2.1E-45 285.3 14.5 272 1-304 44-324 (409)
6 PHA02638 CC chemokine receptor 100.0 1.4E-40 3.1E-45 285.6 15.0 275 1-305 110-399 (417)
7 PHA03087 G protein-coupled che 100.0 2.9E-37 6.3E-42 261.3 21.2 268 2-305 53-325 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 9.6E-36 2.1E-40 243.1 10.3 257 6-286 1-257 (257)
9 PF10324 7TM_GPCR_Srw: Serpent 100.0 2.8E-28 6E-33 204.8 18.9 295 1-304 8-318 (318)
10 KOG2087|consensus 100.0 3.7E-29 7.9E-34 200.0 5.5 268 2-305 37-308 (363)
11 PF10320 7TM_GPCR_Srsx: Serpen 99.9 6.8E-25 1.5E-29 177.2 15.2 256 1-301 2-257 (257)
12 PF10328 7TM_GPCR_Srx: Serpent 99.8 1.8E-19 3.8E-24 147.9 14.4 267 2-301 6-273 (274)
13 PF10323 7TM_GPCR_Srv: Serpent 99.7 5.8E-17 1.3E-21 132.8 15.7 254 20-303 29-283 (283)
14 PF05296 TAS2R: Mammalian tast 99.7 8.1E-16 1.7E-20 127.0 19.9 276 2-305 19-303 (303)
15 PF10321 7TM_GPCR_Srt: Serpent 99.5 1.3E-13 2.9E-18 113.2 8.7 259 8-307 51-311 (313)
16 PF05462 Dicty_CAR: Slime mold 99.4 1.5E-12 3.3E-17 106.4 12.6 251 2-303 19-270 (303)
17 PF03402 V1R: Vomeronasal orga 99.4 2E-12 4.3E-17 102.8 12.4 252 19-297 6-263 (265)
18 PF10317 7TM_GPCR_Srd: Serpent 99.2 8.4E-11 1.8E-15 97.4 8.7 275 2-299 11-292 (292)
19 PF10292 7TM_GPCR_Srab: Serpen 98.7 1.2E-06 2.6E-11 73.7 15.2 274 3-303 30-306 (324)
20 PF02101 Ocular_alb: Ocular al 98.6 5.4E-06 1.2E-10 68.3 17.3 193 25-252 68-267 (405)
21 PF10327 7TM_GPCR_Sri: Serpent 98.6 5.1E-08 1.1E-12 80.9 5.5 273 2-296 21-302 (303)
22 PF02118 Srg: Srg family chemo 98.5 5.8E-07 1.2E-11 74.2 9.3 259 3-296 11-274 (275)
23 PF11710 Git3: G protein-coupl 98.5 3.4E-06 7.4E-11 65.4 11.5 161 18-202 30-199 (201)
24 PF10318 7TM_GPCR_Srh: Serpent 98.4 7.1E-07 1.5E-11 74.6 7.8 276 3-303 17-302 (302)
25 PF10326 7TM_GPCR_Str: Serpent 98.4 1.5E-08 3.2E-13 84.9 -4.1 275 2-298 11-307 (307)
26 PF04789 DUF621: Protein of un 98.2 2.2E-05 4.7E-10 61.8 10.9 259 9-301 34-296 (305)
27 KOG4193|consensus 98.2 3.7E-05 8.1E-10 69.2 13.8 198 67-305 385-583 (610)
28 PF10316 7TM_GPCR_Srbc: Serpen 98.0 1.6E-05 3.5E-10 64.5 5.7 109 3-114 19-127 (273)
29 PF10319 7TM_GPCR_Srj: Serpent 97.6 0.00027 5.9E-09 57.6 7.5 73 219-296 236-309 (310)
30 PF00002 7tm_2: 7 transmembran 97.5 2.7E-05 5.9E-10 62.9 0.0 119 3-132 14-132 (242)
31 PF02117 7TM_GPCR_Sra: Serpent 97.4 0.001 2.2E-08 56.0 9.2 81 23-104 55-137 (328)
32 PF03125 Sre: C. elegans Sre G 97.4 0.0027 5.8E-08 54.6 11.8 39 265-303 283-321 (365)
33 KOG4564|consensus 97.3 0.0012 2.7E-08 57.2 8.3 246 13-305 168-421 (473)
34 PF10322 7TM_GPCR_Sru: Serpent 97.3 0.011 2.3E-07 49.1 12.9 150 70-238 105-256 (307)
35 PF02076 STE3: Pheromone A rec 95.7 0.18 4E-06 41.5 10.5 118 2-132 3-124 (283)
36 PF11970 Git3_C: G protein-cou 95.4 0.02 4.3E-07 36.5 3.0 70 221-293 4-74 (76)
37 PF03383 Serpentine_r_xa: Caen 94.7 0.096 2.1E-06 38.3 5.3 58 75-132 51-108 (153)
38 PF02175 7TM_GPCR_Srb: Serpent 92.1 0.6 1.3E-05 36.7 6.2 46 59-105 77-122 (236)
39 PF01534 Frizzled: Frizzled/Sm 87.7 8.2 0.00018 32.7 9.9 69 66-136 92-160 (328)
40 PF06681 DUF1182: Protein of u 75.4 23 0.00051 27.5 7.4 38 66-103 115-152 (226)
41 KOG4289|consensus 57.5 1.1E+02 0.0023 31.8 9.5 63 225-298 2337-2399(2531)
42 PF13853 7tm_4: Olfactory rece 57.5 0.37 8.1E-06 35.3 -5.1 82 114-201 5-88 (144)
43 PF11368 DUF3169: Protein of u 46.6 1.6E+02 0.0034 23.9 9.2 31 221-251 89-119 (248)
44 COG1862 YajC Preprotein transl 45.3 35 0.00077 23.0 3.3 30 180-209 13-42 (97)
45 PF02699 YajC: Preprotein tran 42.8 60 0.0013 21.0 4.0 23 184-206 10-32 (82)
46 PRK06531 yajC preprotein trans 37.5 37 0.0008 23.6 2.5 26 181-206 7-32 (113)
47 TIGR00739 yajC preprotein tran 32.5 57 0.0012 21.3 2.7 25 185-209 12-36 (84)
48 PRK05886 yajC preprotein trans 31.8 81 0.0018 21.8 3.4 28 180-207 7-35 (109)
49 PF04505 Dispanin: Interferon- 30.8 30 0.00066 22.4 1.2 27 173-199 23-49 (82)
50 PHA03164 hypothetical protein; 30.0 56 0.0012 20.6 2.2 24 18-41 53-76 (88)
51 PRK04989 psbM photosystem II r 25.8 1E+02 0.0022 16.2 2.3 20 173-192 9-28 (35)
52 PF15102 TMEM154: TMEM154 prot 24.5 30 0.00065 25.2 0.4 22 176-197 58-79 (146)
53 TIGR03038 PS_II_psbM photosyst 24.3 1.2E+02 0.0025 15.8 2.3 20 173-192 9-28 (33)
54 PF00375 SDF: Sodium:dicarboxy 24.2 3.8E+02 0.0081 23.5 7.2 105 179-300 137-245 (390)
55 PF11119 DUF2633: Protein of u 22.8 1.7E+02 0.0037 17.6 3.2 30 222-251 4-33 (59)
56 PF05478 Prominin: Prominin; 22.4 2.8E+02 0.006 27.3 6.5 73 169-251 411-483 (806)
57 PF11044 TMEMspv1-c74-12: Plec 22.0 1.6E+02 0.0035 16.4 4.8 26 180-205 12-37 (49)
58 PRK05585 yajC preprotein trans 21.9 1.5E+02 0.0032 20.5 3.3 28 181-208 22-50 (106)
No 1
>KOG4219|consensus
Probab=100.00 E-value=2.4e-48 Score=312.54 Aligned_cols=288 Identities=19% Similarity=0.237 Sum_probs=239.0
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
++++||++|++++..+|++|+.+|+|++|||+||++++++..++........ .|.+|+. .|.+..|+......+
T Consensus 48 vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~-----~W~~G~f-~C~f~nf~~itav~v 121 (423)
T KOG4219|consen 48 VAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ-----EWYFGSF-YCRFVNFFPITAVFV 121 (423)
T ss_pred HHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccccccc-eeeeccccchhhhhH
Confidence 5789999999999888888999999999999999999999999998877765 8999965 566888999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccc-cc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPL-AK 160 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 160 (323)
|++++++||+|||.||.||++.+ .+++.++++++++|+.+++++.|..+..+....+.++ +.....|...|.+. ++
T Consensus 122 SVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d-~~~~~~~~~~~pe~~~~ 198 (423)
T KOG4219|consen 122 SVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYD-GESRVVCVTAWPEHVCP 198 (423)
T ss_pred hHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccC-CcceEEEEEecccccCC
Confidence 99999999999999999999987 6999999999999999999999999988887766544 44455566655544 22
Q ss_pred cCcchh-hhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHH
Q psy6052 161 ENNGLI-FSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFL 239 (323)
Q Consensus 161 ~~~~~~-~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 239 (323)
.+.... ...+.....++.+++|++++...|..|..++|..+....+.. +..+..+.++|+.||+.++++.|.
T Consensus 199 ~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d-------~~~~~~kak~K~vkmliiVV~~Fa 271 (423)
T KOG4219|consen 199 TENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD-------RKHEQLKAKKKVVKMLIIVVVIFA 271 (423)
T ss_pred cchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc-------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 222211 122455666788999999999999999999998764333222 133556677889999999999999
Q ss_pred HHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 240 ITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 240 i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
+||+|+.++.++....++-.........+....|+++.|++.||+||++.|++||.++++.|+++.
T Consensus 272 icWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 272 ICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred HhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence 999999999998876555444555677778899999999999999999999999999999998874
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=7e-44 Score=298.35 Aligned_cols=263 Identities=16% Similarity=0.229 Sum_probs=188.7
Q ss_pred CcccccceeeEEEe--ecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHH
Q psy6052 1 ENGTQTNLLNIVVL--THKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLL 78 (323)
Q Consensus 1 ~ig~~gN~~vi~v~--~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 78 (323)
++|++||+++++++ .+++++++++|+|++|||+||++.++ .+|+...... . .|.+|+. .|++..++....
T Consensus 44 ~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~~-----~-~w~fG~~-lCk~~~~~~~~~ 115 (338)
T PHA03234 44 TLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNRE-----A-LFNFNQA-FCQCVLFIYHAS 115 (338)
T ss_pred HHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-----C-CccCchh-HHHHHHHHHHHH
Confidence 37999999999854 45566679999999999999999987 5776654332 1 7888854 566777899999
Q ss_pred HHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccc
Q psy6052 79 HTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPL 158 (323)
Q Consensus 79 ~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (323)
..+|++++++||+|||+||++|.+++. ++++....++..|+.+++.++|..+..+... .++. ...|..+++
T Consensus 116 ~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~----~~~~-~~~C~~~~~-- 186 (338)
T PHA03234 116 CSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEG----KKGN-YGKCNIHIS-- 186 (338)
T ss_pred HHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeee----cCCC-CCcCcccCC--
Confidence 999999999999999999999998753 3344445566679999999999876543221 1111 112322211
Q ss_pred cccCcchhhhHHH---hHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHH
Q psy6052 159 AKENNGLIFSLHF---WMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVL 235 (323)
Q Consensus 159 ~~~~~~~~~~~~~---~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 235 (323)
.+ ..+..+. .....+.+++|++++++||.+|.+++++.+ .++++|++|++.+++
T Consensus 187 --~~--~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~-------------------~~~~~k~~k~i~~vv 243 (338)
T PHA03234 187 --SK--KAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT-------------------EKKHKKTLFFIRILI 243 (338)
T ss_pred --cc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hhhhhhhhhHHHHHH
Confidence 11 1111111 122233568999999999999999886531 134578999999999
Q ss_pred HHHHHHhhhHHHHHHHHhhhc-----cccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCC
Q psy6052 236 LLFLITEFPQGILALLSGILG-----RCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKP 303 (323)
Q Consensus 236 ~~f~i~~~P~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~ 303 (323)
++|++||+|+.+..++..... ++...........++..++++||++||+||++.+++||+++++.+++
T Consensus 244 ~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~ 316 (338)
T PHA03234 244 LSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQD 316 (338)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999877654321 11111122334567889999999999999999999999998876643
No 3
>KOG4220|consensus
Probab=100.00 E-value=7.3e-43 Score=280.45 Aligned_cols=285 Identities=17% Similarity=0.211 Sum_probs=231.4
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+.++||++|++.+.-++++++..|+|+++||+||+..+.+.+|+...+.+.. .|++|. ..|.++..+-++...+
T Consensus 43 VTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg-----~W~LG~-~~CdlWLalDYvaSNA 116 (503)
T KOG4220|consen 43 VTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMG-----YWPLGP-LVCDLWLALDYVASNA 116 (503)
T ss_pred HhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHc-----ccccch-HHHHHHHHHHHHhhhh
Confidence 4678999999999999999999999999999999999999999999888876 899995 5677888999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++..|++|||..|.+|+.|+...|.+|+..+|++.|++++++-.|.++.|.........+. ..|..++.+
T Consensus 117 SVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~---~eC~iQFls---- 189 (503)
T KOG4220|consen 117 SVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPD---GECYIQFLS---- 189 (503)
T ss_pred hhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCC---CceEEEeec----
Confidence 9999999999999999999999999999999999999999999999998887776544322222 224443221
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCC-----------------------------
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSG----------------------------- 212 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----------------------------- 212 (323)
.... ...-.+..|.+|..+|.++|.+|.+..+++.+.....+....
T Consensus 190 --np~i---TfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~ 264 (503)
T KOG4220|consen 190 --NPAI---TFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGK 264 (503)
T ss_pred --Ccee---ehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccc
Confidence 1111 112335667899999999999999999988776544333210
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 213 -------------------------------------------------------------------------------- 212 (323)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (323)
T Consensus 265 ~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~ 344 (503)
T KOG4220|consen 265 REPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIP 344 (503)
T ss_pred cccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccc
Confidence
Q ss_pred ---------------------------------CCC-----------------------CCccccccccceehhhHHHHH
Q psy6052 213 ---------------------------------TPC-----------------------PQSKVEKRMDRTAHMLVAVLL 236 (323)
Q Consensus 213 ---------------------------------~~~-----------------------~~~~~~~~~~~~~~~~~~i~~ 236 (323)
++. +.+....+|+|+++++..|.+
T Consensus 345 ~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILl 424 (503)
T KOG4220|consen 345 TDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILL 424 (503)
T ss_pred cccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 000 001112568899999999999
Q ss_pred HHHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcccc
Q psy6052 237 LFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLG 308 (323)
Q Consensus 237 ~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~ 308 (323)
.|+++|+||.++.++..+++++. ...+..+..||.++||-+||..|++.|+.||+.+++++.|+..++
T Consensus 425 AFIiTWtPYNImVlv~tFC~~Ci----P~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~ 492 (503)
T KOG4220|consen 425 AFILTWTPYNIMVLVNTFCKNCI----PETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKR 492 (503)
T ss_pred HHHHHcccceeeeehHhhccccc----chhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeeccc
Confidence 99999999999999999988876 345566899999999999999999999999999999998876443
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=5e-41 Score=281.42 Aligned_cols=265 Identities=14% Similarity=0.232 Sum_probs=192.1
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.+++++ ++.|++++|||++|++.. ..+|+.+..... +|.+|+ ..|++..++...+..+
T Consensus 41 ~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~~-~~lP~~i~~~~~------~w~~g~-~~C~~~~~~~~~~~~~ 111 (323)
T PHA02834 41 FGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLMLV-FSFPFIIHNDLN------EWIFGE-FMCKLVLGVYFVGFFS 111 (323)
T ss_pred HHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHHH-HHHHHHHHHHcC------CcCCcc-hHHHhHHHHHHHHHHH
Confidence 6899999999887776655 568999999999999874 478987654321 688875 4666777777778889
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||.+|++|++++. .+.+++...++.+|+.+++.+.|+.+.+.... .++. ..|..+ . ..
T Consensus 112 Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~----~~~~--~~C~~~--~--~~ 180 (323)
T PHA02834 112 NMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDN----TDNL--KQCIFN--D--YH 180 (323)
T ss_pred HHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhcc----CCCc--eEEecc--C--Cc
Confidence 999999999999999999998754 35567777888999999999999876433211 1111 122211 1 11
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHH
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLIT 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 241 (323)
........+.....+..+++|+++++++|.+|.+++++++ +++++|.+|++.++++.|++|
T Consensus 181 ~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~-------------------~~~~~k~~k~~~~vv~~F~ic 241 (323)
T PHA02834 181 ENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCK-------------------NKNKTRSIKIILTVVTFTVVF 241 (323)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------------CcccceEEeehhHHHHHHHHH
Confidence 1111111222233466789999999999999999887642 123467889999999999999
Q ss_pred hhhHHHHHHHHhhhcccccc------ccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 242 EFPQGILALLSGILGRCFFE------SCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 242 ~~P~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
|+|+.+..++..+.+..... +.......++.+++++||++||+||++.+++||+++++++++.+
T Consensus 242 WlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~ 311 (323)
T PHA02834 242 WVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTN 311 (323)
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhh
Confidence 99999988776553221100 01111234678899999999999999999999999999986544
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=9.7e-41 Score=285.27 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=192.0
Q ss_pred CcccccceeeEEEee-cCC-cCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCch-hHHHHHHHHHHHHH
Q psy6052 1 ENGTQTNLLNIVVLT-HKE-LSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYA-GSLFILIHMHFSQL 77 (323)
Q Consensus 1 ~ig~~gN~~vi~v~~-~~~-~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~c~~~~~~~~~ 77 (323)
++|++||+++++++. +++ ++++..+.|++|||++|++.. +.+|+.+... .|.++ +...|++..++...
T Consensus 44 vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~~--------~~~~~~g~~~Ck~~~~l~~~ 114 (409)
T PHA03235 44 SVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLSN--------QGLLSGSVAGCKFASLLYYA 114 (409)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHhc--------CccccCCCCeehhHHHHHHH
Confidence 368999999998643 333 334567899999999999875 4788776431 34333 23568888888888
Q ss_pred HHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeec-CCCceeeEEeeec
Q psy6052 78 LHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWE-SGKLEALYQLHLS 156 (323)
Q Consensus 78 ~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 156 (323)
+..+|++++++||+|||++|++|.++++ .+++++..+++++|+.+++.++|..+..+........ .+.....|...+.
T Consensus 115 ~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 193 (409)
T PHA03235 115 SCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFR 193 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCC
Confidence 9999999999999999999999986654 4688899999999999999999975433221111001 1111222332211
Q ss_pred cccccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHH
Q psy6052 157 PLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLL 236 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 236 (323)
.+........+.....++.+++|+++++++|.+|.++++++.+ ++++|..+++.++++
T Consensus 194 ---~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-------------------~~~~k~~~~v~iivv 251 (409)
T PHA03235 194 ---ADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-------------------KKRSRTLTFVCILLL 251 (409)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------------hcchhhhhhHHHHHH
Confidence 1111112223444455667899999999999999999886432 123466788899999
Q ss_pred HHHHHhhhHHHHHHHHhhhcc-----ccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCC
Q psy6052 237 LFLITEFPQGILALLSGILGR-----CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPK 304 (323)
Q Consensus 237 ~f~i~~~P~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~ 304 (323)
+|++||+|+.+..++..+.+. +...+....+..+..++.++||++||+||++++++||+++++.++++
T Consensus 252 ~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 252 SFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE 324 (409)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence 999999999998877654321 11112223455678889999999999999999999999999888654
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=285.58 Aligned_cols=275 Identities=19% Similarity=0.252 Sum_probs=200.7
Q ss_pred CcccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHH
Q psy6052 1 ENGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHT 80 (323)
Q Consensus 1 ~ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 80 (323)
++|++||+++++++.+ |++|+++|++++|||++|++.++ .+|+++..... +|.+|.. .|++..++...+..
T Consensus 110 vlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~~~------~W~fg~~-~Ck~~~~l~~~~~~ 180 (417)
T PHA02638 110 ILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVI-DFPFIIYNEFD------QWIFGDF-MCKVISASYYIGFF 180 (417)
T ss_pred HHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHHhc------ccccccc-chhhHHHHHHHHHH
Confidence 3689999999977655 56678999999999999998865 79988765432 7888864 46666677888889
Q ss_pred HHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeee----ecCCCceeeEEeeec
Q psy6052 81 ISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQI----WESGKLEALYQLHLS 156 (323)
Q Consensus 81 ~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 156 (323)
++++.++++++|||+||++|.++++..+++++...++.+|+.+++.++|+++..+...... .+.+.....|....+
T Consensus 181 ~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 260 (417)
T PHA02638 181 SNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIED 260 (417)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeecc
Confidence 9999999999999999999999887777788888899999999999999887554332100 011101112322211
Q ss_pred cccccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHH
Q psy6052 157 PLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLL 236 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 236 (323)
.. ................++++++|++++++||.+|.+++++.++ ++++|..|+++++++
T Consensus 261 ~~-~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~-------------------~~k~k~~rli~~ivi 320 (417)
T PHA02638 261 NE-KNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK-------------------SKKTKSIIIVSIIII 320 (417)
T ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------------cccchhhhhHHHHHH
Confidence 10 0001111222233345667899999999999999999876321 234567899999999
Q ss_pred HHHHHhhhHHHHHHHHhhhcc-----------ccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 237 LFLITEFPQGILALLSGILGR-----------CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 237 ~f~i~~~P~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
.|++||+|+.+..++..+... +... .......++..++++||++||++|++.+++||+++++.+++..
T Consensus 321 ~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~-~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~ 399 (417)
T PHA02638 321 CSLICWIPLNIVILFATMYSFKGFNSIISEHICGFI-KLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhccccccccccccHH-HHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence 999999999998887655311 1111 1233456788899999999999999999999999999886554
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=261.31 Aligned_cols=268 Identities=21% Similarity=0.283 Sum_probs=202.2
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++ +++++.|.++.|||++|++.++ ..|......... +|.+++ ..|....++...+..+
T Consensus 53 ~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~-----~~~~~~-~~C~~~~~~~~~~~~~ 124 (335)
T PHA03087 53 FGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILF-----QWSFGE-FACKIVSGLYYIGFYN 124 (335)
T ss_pred HHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCC-----CCCCCc-HHHHHHHHHHHHHHHH
Confidence 6899999999998888 7789999999999999998877 467665333222 677765 5677888888899999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||++|++|+++++..+++++..+++++|+++++.+.|+...+..... .+ ...|+.++. .
T Consensus 125 S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~----~~--~~~C~~~~~----~ 194 (335)
T PHA03087 125 SMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKD----HE--TLICCMFYN----N 194 (335)
T ss_pred HHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeecc----CC--CceEEecCC----C
Confidence 9999999999999999999999988899999999999999999999998776553321 11 123433321 1
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHH
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLIT 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 241 (323)
..............++.+++|.++++++|.++.++++++++ .++++|..|++.+++++|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~------------------~~~~~k~~k~l~~iv~~f~i~ 256 (335)
T PHA03087 195 KTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK------------------SKKNKKAIKLVLIIVILFVIF 256 (335)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------chhcchHHHhHHHHHHHHHHH
Confidence 11112222222334566899999999999999888876431 234568899999999999999
Q ss_pred hhhHHHHHHHHhhhc-----cccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 242 EFPQGILALLSGILG-----RCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 242 ~~P~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
|+|+.+..++..... .+...........+...+..+|+++||+||++++++||+++++.++...
T Consensus 257 w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~ 325 (335)
T PHA03087 257 WLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMF 325 (335)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHh
Confidence 999998776653311 1111122334445778889999999999999999999999999886543
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=9.6e-36 Score=243.15 Aligned_cols=257 Identities=25% Similarity=0.370 Sum_probs=205.0
Q ss_pred cceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy6052 6 TNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQ 85 (323)
Q Consensus 6 gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~ 85 (323)
||++++.++.++|+++++.++++.|||++|++.++...|......... +|..++ ..|.+..++...+..++.++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~-----~~~~~~-~~C~~~~~~~~~~~~~s~~~ 74 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFD-----DWIFSS-FLCRIFGFLFYFSSFSSIFS 74 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS-----SCTSHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccc-----cccccc-cccccccccccccccccccc
Confidence 899999999988888899999999999999999998877777665542 677775 56778889999999999999
Q ss_pred HHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccccCcch
Q psy6052 86 TLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGL 165 (323)
Q Consensus 86 l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
++++++|||++|++|++|++..+++++...++++|+.+++++.|+.+..+.... ..+. ...|..+ .....
T Consensus 75 ~~~is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~---~~~~-~~~C~~~-----~~~~~- 144 (257)
T PF00001_consen 75 LVAISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFV---SDGS-QSFCFID-----FSSSS- 144 (257)
T ss_dssp HHHHHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE---STCC-CEEEEES-----CSSSH-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccc-ccccccc-----ccccc-
Confidence 999999999999999999998898999999999999999999998776444332 1111 2334443 11111
Q ss_pred hhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHHhhhH
Q psy6052 166 IFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQ 245 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~ 245 (323)
...+.....++.+++|++++.++|.++.+++|+++++.+..+... .+++.++|+|.++++..++++|++||+|+
T Consensus 145 -~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~f~~~~~P~ 218 (257)
T PF00001_consen 145 -SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSS-----SRRRSRRERRAARTLLIIVLVFLLCWLPY 218 (257)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccccccccccccceeeeeeecccccccccccccccccccccc-----cccccccccccccccccccccccccCCce
Confidence 444555666777899999999999999999999887654322110 33556788899999999999999999999
Q ss_pred HHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhh
Q psy6052 246 GILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILY 286 (323)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY 286 (323)
.+..++....++... .......+..++.++|+++||++|
T Consensus 219 ~i~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 219 FILSLLSVFSPSSSL--ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHSSTSTC--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHcCccch--hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 999988877655421 566777889999999999999998
No 9
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.96 E-value=2.8e-28 Score=204.81 Aligned_cols=295 Identities=30% Similarity=0.558 Sum_probs=220.8
Q ss_pred CcccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhh-hcccc--cCchhHHHHHHHHHHHHH
Q psy6052 1 ENGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHV-RSKLY--FTYAGSLFILIHMHFSQL 77 (323)
Q Consensus 1 ~ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~-~~~~~--~~~~~~~~c~~~~~~~~~ 77 (323)
.+|+++|++.+.++.|+..|.++.|.+++++|++|++..+..++.......... +++|. ..+.+.....+...+...
T Consensus 8 ~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~ 87 (318)
T PF10324_consen 8 IFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDI 87 (318)
T ss_pred HHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHH
Confidence 379999999999999999988899999999999999999988887776555431 22211 223334455566778888
Q ss_pred HHHHHHHHHHHHhhheeeEEeCCCCCC--cccCCCchhhhhHHHHHHHHHhhcccceeeeeeeee-eecCCCce------
Q psy6052 78 LHTISIFQTLTLAICRHVAIRFPHKCS--ASCSESSCYISVLVAYILPILICAPSYFVFSIREIQ-IWESGKLE------ 148 (323)
Q Consensus 78 ~~~~s~~~l~~iaidRy~ai~~p~~~~--~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------ 148 (323)
+...|.|..++||+.|++++.+|++.+ +..+++.+...+.++++++...+.+.++..+..+.. .+.++...
T Consensus 88 ~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~C~~~~~~ 167 (318)
T PF10324_consen 88 FRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPNCSGFPEN 167 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCceeecccc
Confidence 999999999999999999999999875 466788888999999999999999988777766432 11222110
Q ss_pred ---eeEEeeeccccccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCcccccccc
Q psy6052 149 ---ALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMD 225 (323)
Q Consensus 149 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (323)
..|....++.....+......+....+++.-++|.++..+....+++.+|+.++++++..++ ..+++.
T Consensus 168 ~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~---------~~~~~~ 238 (318)
T PF10324_consen 168 YTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSS---------KSKKSD 238 (318)
T ss_pred ccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhccccc---------cccccc
Confidence 01111100000011112223444445555578999999999999999999988887655421 145778
Q ss_pred ceehhhHHHHHHHHHHhhhHHHHHHHHhhhcc-ccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCC
Q psy6052 226 RTAHMLVAVLLLFLITEFPQGILALLSGILGR-CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPK 304 (323)
Q Consensus 226 ~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~ 304 (323)
++++++..+++.|+++.+|..+..+++.+..+ ............+...+..+|+..|++||..++++||++++++++|+
T Consensus 239 ~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k 318 (318)
T PF10324_consen 239 RTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK 318 (318)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence 99999999999999999999999999876433 22344455666788899999999999999999999999999999975
No 10
>KOG2087|consensus
Probab=99.95 E-value=3.7e-29 Score=199.97 Aligned_cols=268 Identities=14% Similarity=0.127 Sum_probs=194.4
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcc---cccCchhHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSK---LYFTYAGSLFILIHMHFSQLL 78 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~c~~~~~~~~~~ 78 (323)
++++||.+|+......+.+.++...++.|||.+|+++++....+.....-..++.. ..|..| ..|.+.+|+..++
T Consensus 37 lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg--~gC~~aGflavFA 114 (363)
T KOG2087|consen 37 LAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTG--LGCPVAGFLAVFA 114 (363)
T ss_pred HHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhc--CCCchHHHHHHHH
Confidence 57899999999888777777899999999999999999965555554443333221 133333 4688999999999
Q ss_pred HHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccc
Q psy6052 79 HTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPL 158 (323)
Q Consensus 79 ~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (323)
.-+|+++++.+++||+++|++|++..+....|.+..+++..|+.+.+.+..|.++.+. .+....+...+
T Consensus 115 SElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~-------Y~~~~vClPL~---- 183 (363)
T KOG2087|consen 115 SELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISS-------YGASSVCLPLH---- 183 (363)
T ss_pred HHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCC-------Ccccceeeecc----
Confidence 9999999999999999999999999887777779999999999999999988876321 11111222222
Q ss_pred cccCcchhhhH-HHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHH
Q psy6052 159 AKENNGLIFSL-HFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLL 237 (323)
Q Consensus 159 ~~~~~~~~~~~-~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 237 (323)
....... ++....+....+.++++.++|.+++..+++...+. .....+.++-+..++++
T Consensus 184 ----~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~----------------~~~~~~~akr~a~LvfT 243 (363)
T KOG2087|consen 184 ----IEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSA----------------TLISTSVAKRMAFLVFT 243 (363)
T ss_pred ----cCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcc----------------ccchhhhhhCeeEEEEc
Confidence 1111122 34455566778999999999999999888632211 11113667777788888
Q ss_pred HHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 238 FLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 238 f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
-.+||.|..++.+...+..+-...... ..+..++.-+|+++||++|.+.++.||+.++.+..+..
T Consensus 244 d~icw~Pi~f~~~~al~~~~li~~~~s---k~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~ 308 (363)
T KOG2087|consen 244 DCICWCPIAFFKFSALIGVELISVSYS---KWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVG 308 (363)
T ss_pred cccccCchheeeeHHhcCCcccChhhc---eeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcc
Confidence 999999999888776553321111111 12344566789999999999999999999998876653
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.93 E-value=6.8e-25 Score=177.20 Aligned_cols=256 Identities=17% Similarity=0.247 Sum_probs=177.8
Q ss_pred CcccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHH
Q psy6052 1 ENGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHT 80 (323)
Q Consensus 1 ~ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 80 (323)
++|++||+.++.+..++|++|++.++++..+|++|++.++..+|....... +... ....|....+...++..
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~-------~~~i-~~~~Cf~~~~~~~f~~~ 73 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFR-------DHQI-TRSECFWQIFFYIFFQC 73 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHh-------heec-cHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999988887764332 1112 23456677788888889
Q ss_pred HHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccc
Q psy6052 81 ISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAK 160 (323)
Q Consensus 81 ~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (323)
.+...+..|++||++||+.|.+|++..+++..........+.+.......+...+ ++ ....|... .
T Consensus 74 ~qs~~~l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~~~--------~~-~~~~C~pp-----~ 139 (257)
T PF10320_consen 74 AQSVIMLAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLYRD--------DE-TIVICNPP-----L 139 (257)
T ss_pred HHHHHHHHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEecC--------Cc-ccccCCCc-----c
Confidence 9999999999999999999999998878776555555555555555433222111 11 11222221 1
Q ss_pred cCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHH
Q psy6052 161 ENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLI 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i 240 (323)
.-++.....+... ..++ .+++++.|......++++.++ ..++++|..|.+...++.|+.
T Consensus 140 a~~~~~~~~~~~~----~~~i-nv~tvivY~i~~~~~~~k~~~----------------~~~~~~kv~ksL~v~v~i~i~ 198 (257)
T PF10320_consen 140 AFHGTASQIWSYS----NIII-NVITVIVYIITIIIFKRKSRS----------------NSSRSKKVFKSLKVTVIIFIF 198 (257)
T ss_pred ccCccHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHccc----------------cchhHHHHHHHhhhheeeeeH
Confidence 1112222222211 1122 233455676666666654332 245578889999999999999
Q ss_pred HhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhc
Q psy6052 241 TEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLF 301 (323)
Q Consensus 241 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
+|.-..+...+....+.. .+....+.....++..++.+.|.+||.++|+|||+++++++
T Consensus 199 ~w~~s~~~~~v~~~~~~~--~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 199 SWFLSQIINTVSLALGLD--GETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 999877766655433321 22334455667899999999999999999999999999875
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.83 E-value=1.8e-19 Score=147.91 Aligned_cols=267 Identities=16% Similarity=0.149 Sum_probs=179.9
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCc-hhHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTY-AGSLFILIHMHFSQLLHT 80 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~c~~~~~~~~~~~~ 80 (323)
+|++.|.+++..+.+.+.++++.+.+..+.|++|.+.++..+......... +..+ .....-.+.+.....+..
T Consensus 6 ~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~------~~~~~~~~~~s~~~g~~~~~~y~ 79 (274)
T PF10328_consen 6 IGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLL------DISFLPSSLNSIIFGFIGMFCYF 79 (274)
T ss_pred HHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------ccccCchHHHHHHHHHHHHHHHH
Confidence 689999999999999888889999999999999999999654443333332 2222 221223344566777778
Q ss_pred HHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccc
Q psy6052 81 ISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAK 160 (323)
Q Consensus 81 ~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (323)
.+..+..+||++|+.|+..|.+|++..+.+.+..+++..|++++....+.....+....+ +++.-...+ +. +
T Consensus 80 ~~~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y--~~~~~~~~~--~~----~ 151 (274)
T PF10328_consen 80 IGPLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYY--DPETWSWSY--PT----D 151 (274)
T ss_pred HHHHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCccee--ccceeeeec--CC----C
Confidence 899999999999999999999999999999999999999999997766654422221111 222111111 10 0
Q ss_pred cCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHH
Q psy6052 161 ENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLI 240 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i 240 (323)
...+.. .. .........-.++..+++..++.++++.+++... .. ...++++++|.+..+.....-..+.+
T Consensus 152 ~~C~~~-~~---~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~-~~-----~~s~~r~rke~~f~~Qs~~Q~~~~~i 221 (274)
T PF10328_consen 152 PPCGNY-SW---YFDFYKNFILVIISNILNIITFIKLRKFRKKISV-SS-----SESKKRRRKEIRFFIQSFIQDLLYLI 221 (274)
T ss_pred Cccchh-hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cc-----hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 11 1112222444556677888888888887777611 11 11456677899999999999999999
Q ss_pred HhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhc
Q psy6052 241 TEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLF 301 (323)
Q Consensus 241 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
.+.-+....-+.. + .......+.....+.+++|++|+...|+|+|+.+++..
T Consensus 222 ~~~~~~~~~~~~~-------~--~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 222 DLIFYFFIPPLSS-------N--RWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHHHHHhcc-------c--cHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 8887766543311 1 22233334444566788999999999999999998754
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.75 E-value=5.8e-17 Score=132.82 Aligned_cols=254 Identities=18% Similarity=0.225 Sum_probs=157.9
Q ss_pred CcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeC
Q psy6052 20 SATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRF 99 (323)
Q Consensus 20 ~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~ 99 (323)
.+++.+.++.+-+++|++..+...............+- -...++.. -..................+++|++||.||++
T Consensus 29 ~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f-~~~~~~~~-~~~~~~~~y~~~~~~~~gi~lls~nR~~ai~~ 106 (283)
T PF10323_consen 29 FKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDF-YFSYQTYY-AAIYYNIAYYFLYIQCIGIVLLSLNRYLAICF 106 (283)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHhcchh-HHHHHHHHHHHHHHHHHhHHHHHHhhhheEEe
Confidence 46889999999999999998865444333322111110 01111111 22333445556677788899999999999999
Q ss_pred CC-CCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccccCcchhhhHHHhHHHhhH
Q psy6052 100 PH-KCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCI 178 (323)
Q Consensus 100 p~-~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (323)
|. ++.+..++.+...+++.-|+.+.+++.|.+...+..- +..+. ... ..+.......+ ......
T Consensus 107 P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f----~~~~~---~~~-------~~d~~~~~~~~-~~~~~~ 171 (283)
T PF10323_consen 107 PTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYF----DNEEN---MSL-------FVDPEFIQRNF-LIAFIF 171 (283)
T ss_pred ecHHHhhhccccchhheeeeeehhhhhheeeeeccCceee----ecccc---eee-------ecCHHHHHHHH-HHHHHH
Confidence 99 7777889999999999999999999999554332211 22221 111 11111111111 222333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhccc
Q psy6052 179 KLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRC 258 (323)
Q Consensus 179 ~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~ 258 (323)
..+-++..+++|+.+...+||+.++..+. .+++.++|.+.+.+..+....+++...=+ +.........+
T Consensus 172 ~~~~cv~~iv~Y~~i~~~iRk~~k~~s~~---------~s~~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~~~~~~- 240 (283)
T PF10323_consen 172 VSVTCVICIVCYGIIFIFIRKRNKKKSKS---------SSRSRRREIRLAIQVFILFCAFFVILVYY-IFSNYFAQNFN- 240 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHh---------hhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccc-
Confidence 45566778899999999999876422211 33556788888888777766655543333 22222222111
Q ss_pred cccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCC
Q psy6052 259 FFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKP 303 (323)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~ 303 (323)
.+...........+.-+.|.+||+.-.+.|+++|+++++.++|
T Consensus 241 --~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 241 --TDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred --chHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 1112222234556677789999999999999999999999886
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.73 E-value=8.1e-16 Score=127.02 Aligned_cols=276 Identities=16% Similarity=0.103 Sum_probs=175.6
Q ss_pred cccccceeeEEEeec---CCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTH---KELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLL 78 (323)
Q Consensus 2 ig~~gN~~vi~v~~~---~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 78 (323)
+|++||++++.+... |+++-++.|..+.+||+++++............... ...+.....+....++..+.
T Consensus 19 ~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~f~ 92 (303)
T PF05296_consen 19 IGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFF------PNIYFSENVYKIIDFLWMFS 92 (303)
T ss_pred HHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------chhhhhhhHHHHHHHHHHHH
Confidence 699999999877644 455558999999999999999887544333333322 22222233344555677888
Q ss_pred HHHHHHHHHHHhhheeeEEeCCCCCC-cccCC---CchhhhhHHHHHHHH--HhhcccceeeeeeeeeeecCCCceeeEE
Q psy6052 79 HTISIFQTLTLAICRHVAIRFPHKCS-ASCSE---SSCYISVLVAYILPI--LICAPSYFVFSIREIQIWESGKLEALYQ 152 (323)
Q Consensus 79 ~~~s~~~l~~iaidRy~ai~~p~~~~-~~~~~---~~~~~~i~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (323)
...|.|..+++++--++.|...-+.- .+.++ +-....+.+.++.++ ....|.. ++........ +.... ..
T Consensus 93 ~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~--~~~~~~~~~~-~~~~N-~t 168 (303)
T PF05296_consen 93 NSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLF--IDNHINNNNT-NNSRN-ST 168 (303)
T ss_pred hHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--eeeeeccccc-cCCCc-ce
Confidence 89999999999999999998644322 12222 223345667777777 4444433 3221110000 11001 11
Q ss_pred eeeccccccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhH
Q psy6052 153 LHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLV 232 (323)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (323)
.+ ................+..++|++++.++...+...++||.|++++..++. ++.+.+.+.|+.|++.
T Consensus 169 ~~------~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~-----~~ps~~aH~~a~k~~~ 237 (303)
T PF05296_consen 169 SN------FQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGF-----RDPSTEAHIRAIKTMI 237 (303)
T ss_pred EE------eecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-----CCCCcHHHHHHHHHHH
Confidence 10 111112222222333467799999999999999999999999998665433 3455677788888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 233 AVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 233 ~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
...+.|.+.++-..+.. .....+ .......+...+..+.+..+|++-.+.|+++|+++++.+++.|
T Consensus 238 sfl~ly~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k 303 (303)
T PF05296_consen 238 SFLILYIIYFLSLILSF-LSFFFP------ENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK 303 (303)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhc------cccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 77777766554433211 111111 1233445777888999999999999999999999999998753
No 15
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.48 E-value=1.3e-13 Score=113.24 Aligned_cols=259 Identities=15% Similarity=0.133 Sum_probs=151.3
Q ss_pred eeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6052 8 LLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTL 87 (323)
Q Consensus 8 ~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~ 87 (323)
...+.++.+++.++.+.+-.|.-||+.|+......-... ......+...++.+. .-.+.+.+...+...+.....
T Consensus 51 ~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~t-G~l~i~G~vfC~~P~----~~~i~G~~~~~~W~~~c~~~i 125 (313)
T PF10321_consen 51 IPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIIT-GILAIFGAVFCSYPR----FIYIMGCIALGSWCGSCIICI 125 (313)
T ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhh-hHHHhcCccccCCch----HhhhhhccchhhHHHHHHHHH
Confidence 334455667777779999999999999999886432111 111111111112221 112233444555567777888
Q ss_pred HHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHH--HHhhcccceeeeeeeeeeecCCCceeeEEeeeccccccCcch
Q psy6052 88 TLAICRHVAIRFPHKCSASCSESSCYISVLVAYILP--ILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGL 165 (323)
Q Consensus 88 ~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.+++||..-+..|.........++....+.+..+.+ ..+..++..+-.... .+..|.......+...
T Consensus 126 ~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~-----------sw~fDP~i~~g~~~~~ 194 (313)
T PF10321_consen 126 LLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYM-----------SWFFDPMIFEGKSPEL 194 (313)
T ss_pred HHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcc-----------eEecCccccCCCCccc
Confidence 899999999998887776666666655444433332 232334433211111 1222200000111111
Q ss_pred hhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHHhhhH
Q psy6052 166 IFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQ 245 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~ 245 (323)
..+ .......++-.+.+.++|..+...++++.++.. +++..+.+++......++.+...+.++-|
T Consensus 195 Y~N----~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~-----------s~~~~k~~~qI~iQs~iIC~f~~i~a~iy 259 (313)
T PF10321_consen 195 YSN----IPHTFNNIIVVICTTFLYIYLCYYLIKKSKYST-----------SSQLSKAQRQIFIQSVIICFFHAIAAVIY 259 (313)
T ss_pred hhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------chhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122233344556677889998888888755442 22335556666666666666666655544
Q ss_pred HHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCccc
Q psy6052 246 GILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVL 307 (323)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~ 307 (323)
.....+ +.+.++...++....+++..+|+||...|+..|+++++++++++.+
T Consensus 260 v~m~f~----------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~r 311 (313)
T PF10321_consen 260 VYMQFF----------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKIR 311 (313)
T ss_pred Heeeee----------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccccc
Confidence 333221 2245666778889999999999999999999999999999876633
No 16
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.45 E-value=1.5e-12 Score=106.44 Aligned_cols=251 Identities=15% Similarity=0.101 Sum_probs=152.2
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
++++|-++++..+...|+.|++.+-++.-++++|++..+..+..... . .. ..+...|.++.++..++..+
T Consensus 19 lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~---~------~~-~~~s~lC~~Qafliq~f~~a 88 (303)
T PF05462_consen 19 LSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS---P------SA-GENSFLCQFQAFLIQFFMLA 88 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc---c------cC-CCCCcchhhHhHHHHHhhHH
Confidence 56788888888888888888999999999999999988654332211 1 11 11245688999999999988
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
+.+=.++||++=|+.++++... .+|.-+.....+|.++++.++.++.... +.+.+.. |=.+ +
T Consensus 89 s~lWt~~iA~nly~~~~~~~~~----~~k~e~~Y~l~~wGiPli~a~i~l~~~~------~g~~G~W--CWI~-----~- 150 (303)
T PF05462_consen 89 SFLWTLCIAFNLYLTFVKRYDE----LEKLEKYYHLVCWGIPLIPAVIPLIGND------YGPAGNW--CWIK-----P- 150 (303)
T ss_pred HHHHHHHHHHHhhheeEEcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCCCCc--eeec-----C-
Confidence 8877778999999999875332 2444566788899999988776553211 1222211 1111 1
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHH-HHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHH
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIG-ALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLI 240 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i 240 (323)
.....+ ...+.+|+.++......+.. ..+...+..+ ...+ .+++++.+...-+..=.++|++
T Consensus 151 -~~~~~r-------~~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~---~~~s------d~~~~~~~~~~kL~~Yp~ifii 213 (303)
T PF05462_consen 151 -EWDVWR-------FALFYIPLWIIIIISAILVGITMRYIYRVIR---NGVS------DNKDKHLKYQLKLVNYPLIFII 213 (303)
T ss_pred -CCcchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccc------hhHHHHHHHHHHHHHHHHHHHH
Confidence 111111 22334555433222211111 1111111111 1100 1111112222224467788999
Q ss_pred HhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCC
Q psy6052 241 TEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKP 303 (323)
Q Consensus 241 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~ 303 (323)
||+|..+..+.+.+. . ....+..+-..++-+...+|.++|++.++-++|.+...+++
T Consensus 214 cw~fa~INRI~~~~~-~-----~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~ 270 (303)
T PF05462_consen 214 CWIFATINRIYNFIG-K-----NPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILC 270 (303)
T ss_pred HHHHHHHHHHHHHhc-C-----CchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999888652 2 12344445556777788999999999999988888766543
No 17
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=99.44 E-value=2e-12 Score=102.84 Aligned_cols=252 Identities=16% Similarity=0.113 Sum_probs=163.3
Q ss_pred cCcCchHHHHHHHHHHhHHHHhh-hHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEE
Q psy6052 19 LSATPINRILTGLAVTDLLVMLE-YVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAI 97 (323)
Q Consensus 19 ~~~~~~~~~l~~La~~Dll~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~iaidRy~ai 97 (323)
.+.+|.|..+.+||++|.+..+. ++|.. .... .|..-++..|+...|+..++...|+.+.+++++-+-+.|
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~-~~~~-------~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItI 77 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQT-MAFF-------GWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITI 77 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHH-HHHh-------hcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEE
Confidence 34588999999999999999875 45532 2222 333234556777779999999999999999999999988
Q ss_pred eCCCCCC----cccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCC-CceeeEEeeeccccccCcchhhhHHHh
Q psy6052 98 RFPHKCS----ASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESG-KLEALYQLHLSPLAKENNGLIFSLHFW 172 (323)
Q Consensus 98 ~~p~~~~----~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
. |-..+ |...++.....+...|++-..+.....+.....+.....+. .....|... .. +......+.
T Consensus 78 S-P~~s~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~-----~~--~~~~~~~~~ 149 (265)
T PF03402_consen 78 S-PSNSRWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSV-----PI--SYIVSSLFA 149 (265)
T ss_pred e-cCCchhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEE-----ec--chhhhhhhh
Confidence 6 43332 22345566667778899888776543332211111000110 011122222 11 111111111
Q ss_pred HHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHH
Q psy6052 173 MYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLS 252 (323)
Q Consensus 173 ~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~ 252 (323)
....+-=++.+.+|+...+.+...+.||+++.+...+.+. ..+...|.|+++++++.+..|+..+....++....
T Consensus 150 ~~~~~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~-----s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~ 224 (265)
T PF03402_consen 150 TLLSFRDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSL-----SPRSSPETRATKTILLLVSTFVSFYGLSSILFIYL 224 (265)
T ss_pred hHHHhhHHHHHHHHHhhhhhheeeeeecccccccCcCCCC-----CCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHH
Confidence 2222222556678888999999999999999887766543 34456789999999999999999988877765443
Q ss_pred hhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHH
Q psy6052 253 GILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTF 297 (323)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~ 297 (323)
....+ ......+..++...-+.+-|++-...+++..+.+
T Consensus 225 ~~~~~------~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 225 TSFKN------SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred HHhcC------CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 32222 1223346778888899999999999998887754
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=99.19 E-value=8.4e-11 Score=97.37 Aligned_cols=275 Identities=16% Similarity=0.115 Sum_probs=154.3
Q ss_pred cccccceeeEEEeec-CCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCc-----hhHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTH-KELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTY-----AGSLFILIHMHFS 75 (323)
Q Consensus 2 ig~~gN~~vi~v~~~-~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~~c~~~~~~~ 75 (323)
+|++.|+++++.+.+ .++.-+...+++.|-|+.|++.++... +........+..-..+.+ -+...|.....+.
T Consensus 11 ~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~-~~q~R~i~~~~~~~~~~~GpC~~~~~~~C~~~y~~~ 89 (292)
T PF10317_consen 11 LGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAF-LTQPRIIPNGTSIAVISYGPCRYFGPWFCFFCYHIM 89 (292)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccCCCCcEEEEeeecceecCcHHHHHHHHHH
Confidence 688899999876655 444456788999999999999998533 333333322211101111 1234565555566
Q ss_pred HHHHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeee
Q psy6052 76 QLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHL 155 (323)
Q Consensus 76 ~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (323)
..+...+.+.+.+--.-||..+.++.. ++++....+...+..++.......+..................+..+.
T Consensus 90 ~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p~y~~~~ 164 (292)
T PF10317_consen 90 LHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHPEYNLEN 164 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCccccccc
Confidence 667778888888888899999987643 456666777777777776655443321111000000000001111110
Q ss_pred cccccc-CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHH
Q psy6052 156 SPLAKE-NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAV 234 (323)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 234 (323)
....+. +.....................++..++--++.+.++++..+. +++.++.+++..+.+..-
T Consensus 165 ~~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~------------S~~tk~~h~~lv~~Lt~Q 232 (292)
T PF10317_consen 165 YSISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSM------------SERTKSMHRQLVKGLTIQ 232 (292)
T ss_pred ceeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhc------------CHHHHHHHHHHHHHHHHH
Confidence 000011 1111111111111111111111222333333444444322111 234456677888888888
Q ss_pred HHHHHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHH
Q psy6052 235 LLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQ 299 (323)
Q Consensus 235 ~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~ 299 (323)
...=.++..|.....++...... ..............+.+.+||++....-+.||++++|
T Consensus 233 ~~lP~~~~~p~~~~~~~~~~~~~-----~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 233 ALLPLFFYIPGVIIYFLSQFTGY-----EHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 88888888887777776655332 2345555677778888999999999999999999875
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.67 E-value=1.2e-06 Score=73.70 Aligned_cols=274 Identities=12% Similarity=0.095 Sum_probs=142.0
Q ss_pred ccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHH---HHhHhhhhcccccCchhHHHHHHHHHHHHHHH
Q psy6052 3 GTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSI---YMYFVHVRSKLYFTYAGSLFILIHMHFSQLLH 79 (323)
Q Consensus 3 g~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 79 (323)
|++.++..+....+++..|....+++....++.++.++.-+.... ..+... ++.|+... +...|........++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~-~~~Cd~~~-~~~~C~~lR~~~~~~~ 107 (324)
T PF10292_consen 30 AFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFP-DDPCDMIP-STYRCFILRIPYNFGL 107 (324)
T ss_pred HHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCccccc-chhHHHHHHHHHHHHH
Confidence 334444444444556677777888999999999988875333332 222222 23334444 3556766677888888
Q ss_pred HHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccc
Q psy6052 80 TISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLA 159 (323)
Q Consensus 80 ~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (323)
..+..+..++++||++|-.+.-+|.+. ++.-+..+..+-|+.+.......+...+ .++. ...+|...
T Consensus 108 ~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~~~~~~~~~~-------~~~~-~~~yC~~~---- 174 (324)
T PF10292_consen 108 FLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLILYFVYSDED-------FPNE-RMYYCQAS---- 174 (324)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHHHHHHHhhhh-------ccCc-cceeeEEe----
Confidence 899999999999999999999999853 3333334444445555444332221111 1111 22233321
Q ss_pred ccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHH
Q psy6052 160 KENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFL 239 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~ 239 (323)
..+ .......... +..++- ++..+. +..+.+..++.+..+.. ..-.++-+.++..|..+.+..++....
T Consensus 175 ~~~--~~~~~~~~~~--~~~~~~-i~~~i~----f~~L~~~Nkk~r~~~~~--~~LS~RYQl~ENl~slr~L~p~~~~~~ 243 (324)
T PF10292_consen 175 SSS--SPYRVNIPFI--VILVLQ-ILALIL----FRYLLRKNKKLRKQQKH--STLSERYQLEENLRSLRLLKPFIILSS 243 (324)
T ss_pred cCC--CchhhHHHHH--HHHHHH-HHHHHH----HHHHHHHHHHHHhhccC--CCcchHHhHHhHHHHHHHHHHHHHHHH
Confidence 111 1111111111 101111 111111 22222222222211100 011123344556677787777666666
Q ss_pred HHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCC
Q psy6052 240 ITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKP 303 (323)
Q Consensus 240 i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~ 303 (323)
+.-..+.+..+.....++.........+..+. ......+.+-|++.....++.|++.++.+..
T Consensus 244 i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~~-~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l~~ 306 (324)
T PF10292_consen 244 IFIFFYIFASIFLRLFNPSMSKPNYFALAELN-HIFPLYSIISPLILYRKIKKIRKKRKKRLEK 306 (324)
T ss_pred HHHHHHHHHHHHHHHhcccCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555544444333323233333333333 3556678899999999999999988776653
No 20
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.64 E-value=5.4e-06 Score=68.32 Aligned_cols=193 Identities=20% Similarity=0.179 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcc------cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEe
Q psy6052 25 NRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSK------LYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIR 98 (323)
Q Consensus 25 ~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~iaidRy~ai~ 98 (323)
.-.+..||++|++.++..+.-... .+...+.. ..-.......|.......+++..++.|=+.+-|+|-|+.+.
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~v-Wl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~ 146 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSV-WLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIR 146 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhh-hhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 457999999999999854333322 22111000 00011123567666666667777888878888999999986
Q ss_pred CCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccccCcchhhhHHHhHHHhhH
Q psy6052 99 FPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCI 178 (323)
Q Consensus 99 ~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (323)
+-- .+......=...|..+.+++.--..... .++... |... .+.. +.+++.+
T Consensus 147 ~~a------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly-------~Ps~~~--Ce~~------l~~a----lphYvtt--- 198 (405)
T PF02101_consen 147 RSA------GRSTIWLYHMMAWGLPALLCAEGLAMLY-------YPSISR--CESG------LEHA----LPHYVTT--- 198 (405)
T ss_pred ccC------CCcchhHHHHHHHHHHHHHHHhccceee-------cCCHHh--hhhh------hhhc----chhHHHH---
Confidence 421 1222345556789888887654332221 222211 1111 1111 1111222
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccc-cccceehhhHHHHHHHHHHhhhHHHHHHHH
Q psy6052 179 KLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEK-RMDRTAHMLVAVLLLFLITEFPQGILALLS 252 (323)
Q Consensus 179 ~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~ 252 (323)
.+|++++.+.+=.++++.-+.....-+.+... -..++| ....+-+-.+.+.++|.+||+|-.+-.++-
T Consensus 199 -Y~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~-----yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL 267 (405)
T PF02101_consen 199 -YIPLLLVLVANPILYIKAVRAVASLLKGRQGI-----YTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLL 267 (405)
T ss_pred -HHHHHHHHHhccHHHHHHHHHHHHHHhhcccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHH
Confidence 45666666555444443322222211111110 111111 122333446778899999999998876654
No 21
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.62 E-value=5.1e-08 Score=80.88 Aligned_cols=273 Identities=13% Similarity=0.107 Sum_probs=146.3
Q ss_pred cccccceeeEEEeecCCcCcCchHHHH----HHHHHHhHHHHhhhHHHHHHHhHhhhhccc--ccCchhHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRIL----TGLAVTDLLVMLEYVPFSIYMYFVHVRSKL--YFTYAGSLFILIHMHFS 75 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l----~~La~~Dll~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~c~~~~~~~ 75 (323)
++++.|.+.++.+..+..+.....+++ +...++|+-.++..-|.-+........... +|--.+...| ..+.
T Consensus 21 iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy~~G~l~~~f~i~~h~~---~~i~ 97 (303)
T PF10327_consen 21 ISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGYCVGFLARYFGISSHYL---MTIW 97 (303)
T ss_pred HHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEEEEeehhhcCCCchHHH---HHHH
Confidence 467789999866554333333444444 455788888887766666655443221110 1100111112 1222
Q ss_pred HHHHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeec-CCCceeeEEee
Q psy6052 76 QLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWE-SGKLEALYQLH 154 (323)
Q Consensus 76 ~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 154 (323)
.+......-.++.--+-|..+|.+..+.++ .++..-........+...+...... ..+...++..+ -.+....|...
T Consensus 98 ~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~s~eeq~~yI~~nyP~~~~~ 175 (303)
T PF10327_consen 98 IFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIFICFY-FSGMSREEQMEYIRENYPEYLSW 175 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHHHHHH-hcCCCHHHHHHHHHhhCCchhHH
Confidence 222233334444445678999988776654 2333223333333333433333221 12211110000 00000011111
Q ss_pred ec--cccccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhH
Q psy6052 155 LS--PLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLV 232 (323)
Q Consensus 155 ~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (323)
.. ++.................+.+...-.....+++..+++.+++.+++.. .+..++++++.+.+.
T Consensus 176 F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS------------~~ty~kHk~av~SLi 243 (303)
T PF10327_consen 176 FSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS------------KQTYQKHKEAVRSLI 243 (303)
T ss_pred HhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------HHHHHHHHHHHHHHH
Confidence 10 0001111112223333344444566667777888888888887776552 345678889999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHH
Q psy6052 233 AVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVT 296 (323)
Q Consensus 233 ~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~ 296 (323)
+-..+-.+|-+|..+....... + .+..+.+..........+|.+|-++-.+.+++||+-
T Consensus 244 ~Q~~~~~i~~~P~~~~~~~~~~--~---~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 244 AQFATSSICILPPFIFVVVVIF--E---FEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHHhhhhhee--c---CCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 9998889999998876654432 1 223445566777888999999999999999999984
No 22
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.53 E-value=5.8e-07 Score=74.16 Aligned_cols=259 Identities=12% Similarity=0.130 Sum_probs=127.7
Q ss_pred ccccceeeEEEeecCCc---CcCchHHHHHHHHHHhHHHHhhhHHH-HHHHhHhhhhcc-cccCchhHHHHHHHHHHHHH
Q psy6052 3 GTQTNLLNIVVLTHKEL---SATPINRILTGLAVTDLLVMLEYVPF-SIYMYFVHVRSK-LYFTYAGSLFILIHMHFSQL 77 (323)
Q Consensus 3 g~~gN~~vi~v~~~~~~---~~~~~~~~l~~La~~Dll~~~~~~p~-~~~~~~~~~~~~-~~~~~~~~~~c~~~~~~~~~ 77 (323)
|++.+..+++++.++++ .+++.+.+...=++.|++.-+...+. .+.......... ..+.........+..++...
T Consensus 11 s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 90 (275)
T PF02118_consen 11 SLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYFLQYY 90 (275)
T ss_pred HHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHHHHHH
Confidence 34455666666655544 36777777766677777665543332 122110000000 00000111223344567777
Q ss_pred HHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecc
Q psy6052 78 LHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSP 157 (323)
Q Consensus 78 ~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (323)
+..+.......++++|+-++..|.++.+.-++ .....++++.+.++....+... .+.... .+++.....+...
T Consensus 91 ~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~-~~~~~i~~i~~~p~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~--- 163 (275)
T PF02118_consen 91 FAYVQYLSTILISLNRFTSVLFPIRYEKFWKR-YYWIIIIIIFLLPFSFTWNIFI-SPTYVV--YDNGGFSYSYNDT--- 163 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHh-hhhhheeeeeehhHHHHHHHHc-cccEEE--EECCceEEEEEec---
Confidence 78888999999999999999999999874343 3333444444445444333332 221111 1222222222111
Q ss_pred ccccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHH
Q psy6052 158 LAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLL 237 (323)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 237 (323)
.. ... ........+++-.++.++++....+++++.+++ .++.|++..+......+.
T Consensus 164 ----~~--~~~--~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~~----------------~~~~er~L~~is~~~~~~ 219 (275)
T PF02118_consen 164 ----VS--WAS--LSIFSLIYFIIIIIITIITNIITYRRLRKLSKR----------------IKSVERNLTIISFIISFV 219 (275)
T ss_pred ----cc--hhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------------hhHHHHHHHHHHHHHHHH
Confidence 01 111 111222223444445556666666666654422 234466666666666666
Q ss_pred HHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHH
Q psy6052 238 FLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVT 296 (323)
Q Consensus 238 f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~ 296 (323)
+.+.-....+... ....+. .+.............=+-+...|++-...+++.|++
T Consensus 220 ~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 220 QLLIAIWQIINSF-AFFFDF---LPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHHHH-HHhhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 6555444433211 111111 111222222222222333667899999999999986
No 23
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.47 E-value=3.4e-06 Score=65.35 Aligned_cols=161 Identities=12% Similarity=0.014 Sum_probs=93.2
Q ss_pred CcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEE
Q psy6052 18 ELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAI 97 (323)
Q Consensus 18 ~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~iaidRy~ai 97 (323)
++++.-.+-++.||.++|++.++..+......... +-...+...|..++++.+.+...+-+...+||++=|+.+
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~------~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v 103 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLAR------GGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIV 103 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667799999999999998654423322221 222234568999999999999999999999999999999
Q ss_pred eCCCCCCc---------ccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccccCcchhhh
Q psy6052 98 RFPHKCSA---------SCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFS 168 (323)
Q Consensus 98 ~~p~~~~~---------~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
.+|-..++ ...+........+.|++...++... .....+.+...-|-...+ ...++
T Consensus 104 ~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~------~~~~~Y~~~g~WCWi~~~---------~~~~R 168 (201)
T PF11710_consen 104 FRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG------LGGPGYGPAGAWCWIPSR---------YEWYR 168 (201)
T ss_pred hcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHHhc------cccCcccccCcEEEECCC---------cHHHH
Confidence 99822111 0112222333345555555444332 111112333322222211 11122
Q ss_pred HHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhH
Q psy6052 169 LHFWMYSVCIKLLPCLVLSVISYYLIGALRQASK 202 (323)
Q Consensus 169 ~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~ 202 (323)
.... -+--.+-.+.+++.|..++..+|++.|
T Consensus 169 l~l~---y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 169 LWLH---YIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 2111 111244566677889999999988654
No 24
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=98.45 E-value=7.1e-07 Score=74.63 Aligned_cols=276 Identities=14% Similarity=0.133 Sum_probs=137.4
Q ss_pred ccccceeeEEE-eecCCcCcCchHHHHHHH----HHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHH
Q psy6052 3 GTQTNLLNIVV-LTHKELSATPINRILTGL----AVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQL 77 (323)
Q Consensus 3 g~~gN~~vi~v-~~~~~~~~~~~~~~l~~L----a~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 77 (323)
+++-|++..+. +.|.++..+...+.++++ .+.|+..+....|............. -.... ..-...+.++...
T Consensus 17 ~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G-~l~~~-gv~~~~q~~i~~~ 94 (302)
T PF10318_consen 17 SIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLG-ILSYF-GVPTPIQFYIGVT 94 (302)
T ss_pred HHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCc-chhhc-ccChHHHHHHHHH
Confidence 44556666654 444444445566666655 45566666666665544433221111 00000 0112233344555
Q ss_pred HHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEe----
Q psy6052 78 LHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQL---- 153 (323)
Q Consensus 78 ~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 153 (323)
.......++..+=-+||.++..+.+.. ..++.-.......++.+.....|...... ++......-.....|..
T Consensus 95 ~~~~~~~S~~~lFe~R~~~i~~~~~~~--~~~~~r~~~~~~~y~~~~~~~~~~~~~~p-dQ~~~k~~~~~~~pc~~~~~~ 171 (302)
T PF10318_consen 95 LLAFVGVSILSLFENRYQIIIRNRSRS--LWKKIRIIFIIFNYIIAFLFFIPIYLSIP-DQEEAKQEVLKKYPCPPPEFF 171 (302)
T ss_pred HhhhhhHHHHHHHHHHHHHHhcccccc--cchhhHHHHHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhccCCchhhc
Confidence 555666677777889999998654411 12222233444455566666666554332 11100000000000100
Q ss_pred eeccccccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHH
Q psy6052 154 HLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVA 233 (323)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (323)
+..+..-...+.. ..........++....+.+....+...++++.++.. +++..+.++|..+.+.+
T Consensus 172 ~~~~~fv~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~~-----------S~~T~k~Qkkfl~~l~i 237 (302)
T PF10318_consen 172 DNPPVFVLSTDSW---YILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKKTM-----------SKKTRKMQKKFLIALII 237 (302)
T ss_pred CCCCeEEEcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh-----------CHHHHHHHHHHHHHHHH
Confidence 0000000111111 111222222233333344444445555555443111 23445666777777777
Q ss_pred HHHHHHHH-hhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCC
Q psy6052 234 VLLLFLIT-EFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKP 303 (323)
Q Consensus 234 i~~~f~i~-~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~ 303 (323)
.+.+..+. -.|.......... + ...+...++...+...++...-++..+.+|.+|+.++++++|
T Consensus 238 Q~~ip~~~l~~P~~~~~~~~~~-~-----~~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 238 QVLIPFIFLFIPLIYFIISIIF-G-----YYNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred HHHHHHHHHhhhHHHHHHHHhc-c-----ccccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 77666555 4476555443322 1 123445567778888999999999999999999999999986
No 25
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.37 E-value=1.5e-08 Score=84.94 Aligned_cols=275 Identities=17% Similarity=0.103 Sum_probs=139.7
Q ss_pred cccccceeeEEEeecC-CcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhh-----h-cccccCchhHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHK-ELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHV-----R-SKLYFTYAGSLFILIHMHF 74 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~-~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~-----~-~~~~~~~~~~~~c~~~~~~ 74 (323)
++++.|++.++.+.++ ++.-.....++...|+.|+..++.............. . .+ .+..+... ......+
T Consensus 11 ~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~~~-~~~l~~~ 88 (307)
T PF10326_consen 11 LSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSG-PFFLSKSI-GQILLAI 88 (307)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecc-cccccchh-eeehhhh
Confidence 5788899998776543 4444566778999999999999875544332221110 0 00 11111111 1111122
Q ss_pred HHHHHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeee----------eecC
Q psy6052 75 SQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQ----------IWES 144 (323)
Q Consensus 75 ~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~----------~~~~ 144 (323)
...+...+...++.-=+.||.++++|.+-+. .+.++........-+.++.......+.....+.. .++.
T Consensus 89 y~~~f~~~~~llaihFiYRY~av~~~~~l~~-f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~y~~ 167 (307)
T PF10326_consen 89 YCGCFGMSFSLLAIHFIYRYWAVCRPKKLRY-FSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLENYGL 167 (307)
T ss_pred hhhhHHHHHHHHHhHhhhheeeeccchhhcc-ccccceeeeehhhhhhcccceEEEeehhccchhhhhhhccccccccCC
Confidence 2223345556666677789999999987643 3444443333333333333333322222111100 0000
Q ss_pred CCceeeE-EeeeccccccCcc---hhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccc
Q psy6052 145 GKLEALY-QLHLSPLAKENNG---LIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKV 220 (323)
Q Consensus 145 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 220 (323)
+..+..+ ....... +.++. .+..............+...++++|-.++.+++++..+.. +++.
T Consensus 168 ~i~~~~y~~~~~y~~-~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~------------S~~~ 234 (307)
T PF10326_consen 168 DIDEIPYVGFVYYPK-DENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM------------SSKT 234 (307)
T ss_pred CccceeEEEEEEeee-ccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc------------Chhh
Confidence 1111111 1111100 11111 1112112222223346677778888888888775433221 1123
Q ss_pred cccccceehhhHHHHHH-HHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHH
Q psy6052 221 EKRMDRTAHMLVAVLLL-FLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFG 298 (323)
Q Consensus 221 ~~~~~~~~~~~~~i~~~-f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~ 298 (323)
++-+++..+++.+.+.+ .+...+|..+....-.+. -.......+......+.+++||++-.+.-|+||++++
T Consensus 235 ~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~------i~~~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 235 RKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFG------IDLGFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred HHHHHHHHHHHHHHhhhhheeeecchhheeeeeccC------CCCCccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 34455666666655533 455678887665443321 1123334456677778899999999999999999874
No 26
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.24 E-value=2.2e-05 Score=61.83 Aligned_cols=259 Identities=14% Similarity=0.137 Sum_probs=143.6
Q ss_pred eeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhh----HHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHHHHH
Q psy6052 9 LNIVVLTHKELSATPINRILTGLAVTDLLVMLEY----VPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIF 84 (323)
Q Consensus 9 ~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~ 84 (323)
+++.++....-++-+..+++..|.++-.+....- .|..+......+ ...+ ..-.+..+...++..+-.+
T Consensus 34 lv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~-----~~~s--~~f~~~Sy~idf~h~siLf 106 (305)
T PF04789_consen 34 LVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKE-----FVQS--ELFIFMSYLIDFCHYSILF 106 (305)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHH-----Hhcc--chhhHHHHHHHHHHHHHHH
Confidence 3333444445555678999999999988877654 455554443321 1111 1222444666777777788
Q ss_pred HHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccccCcc
Q psy6052 85 QTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNG 164 (323)
Q Consensus 85 ~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (323)
.-..+|++|....-.-....+...+.-..+.+..+|++++..-....- -+....++...++-...|..+ . ..-+.
T Consensus 107 sNlviaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~-~nC~Y~y~~~~~~y~L~C~~~-~---~~v~~ 181 (305)
T PF04789_consen 107 SNLVIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMS-NNCRYRYNKWSKHYQLNCETC-N---SVVDI 181 (305)
T ss_pred HHHHHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHh-CCCeeecccccccEEEEcCCC-C---eeEee
Confidence 888999999888764333334556677788888999998876543221 222111111111111112111 0 11111
Q ss_pred hhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHHhhh
Q psy6052 165 LIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFP 244 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P 244 (323)
......-.+..++.+.+|+.+.. .|..+.-++-..++ ....+.|.+..|....+.+.|-+ +
T Consensus 182 ~~P~~IqiiE~ilQ~~IPi~Il~-iYiAIIiKI~~MKk---------------ssLnK~Ei~ILKQAifIFvlFQ~---s 242 (305)
T PF04789_consen 182 SPPRGIQIIEIILQFGIPIFILV-IYIAIIIKIIKMKK---------------SSLNKNEITILKQAIFIFVLFQA---S 242 (305)
T ss_pred CCCCchhHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhh---------------ccCCchhHHHHHHHHHHHHHHHH---H
Confidence 22222233566777899976654 57766666554432 22345577777777766555544 4
Q ss_pred HHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhc
Q psy6052 245 QGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLF 301 (323)
Q Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~ 301 (323)
..++.+-... + ........+..+...+-....+..|....+.++|.|+-+-...
T Consensus 243 s~VFl~~qt~-~--~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~kv 296 (305)
T PF04789_consen 243 SCVFLLCQTF-K--FNVATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSSKV 296 (305)
T ss_pred HHHHHhheee-e--ecchHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHhhc
Confidence 4333322221 0 0011122233344555667788999999999999998766533
No 27
>KOG4193|consensus
Probab=98.23 E-value=3.7e-05 Score=69.16 Aligned_cols=198 Identities=13% Similarity=0.126 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCC
Q psy6052 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGK 146 (323)
Q Consensus 67 ~c~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (323)
.|....++..++..++..=+.+++++=|...+.-++. ..+++........|..++++.................++.
T Consensus 385 ~C~~~a~llhff~LaaF~Wm~leg~hl~~~~v~vf~~---~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~ 461 (610)
T KOG4193|consen 385 LCIAAAILLHFFFLAAFFWMLLEGFHLYLLLVEVFRS---RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRV 461 (610)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCc
Confidence 5767677777777777777888888888854443322 3455555565689998887765544322211111111111
Q ss_pred ceeeEEeeeccccccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHH-HHhhHHHhhccccCCCCCCCcccccccc
Q psy6052 147 LEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGAL-RQASKRKHQLKSKSGTPCPQSKVEKRMD 225 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (323)
|=.+ .+... +..|+.|+.+++.+++.++... ++..++...... ..++....
T Consensus 462 ----CWl~------~~~~~----------~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~--------~~~~~~~~ 513 (610)
T KOG4193|consen 462 ----CWLD------TQNGF----------IWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQP--------IASKLENI 513 (610)
T ss_pred ----eEEe------cCCce----------EEEEehHHHHHHHHHHHHHHHHHHHHhhcccccCc--------chhhHHHH
Confidence 1111 11111 1115678888888775555433 332222221111 01111112
Q ss_pred ceehhhHHHHHHHHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 226 RTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 226 ~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
+..+..+.+..++-++|.--... .. ......+.++..++-.+..+.=.+.|.+++++.|++.++.++|.+
T Consensus 514 ~~~~~~l~L~~lLGlTW~fgi~s----~~------~~~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~ 583 (610)
T KOG4193|consen 514 SLIRSALALLFLLGLTWIFGIFS----WL------PGTSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGR 583 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----Hh------cccchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccC
Confidence 56777888888888888743222 11 112334444555555555667777889999999999999998654
No 28
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.96 E-value=1.6e-05 Score=64.45 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=65.1
Q ss_pred ccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHHH
Q psy6052 3 GTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTIS 82 (323)
Q Consensus 3 g~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s 82 (323)
....|...+..+...|+++++.-.+.--....|.+.+....+...........++ .... ...-.+.+........+.
T Consensus 19 ~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~if~~~~p~~~~~~iR 95 (273)
T PF10316_consen 19 TCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPE-FLDY--KNLIFYIGWPSSNLGSIR 95 (273)
T ss_pred HHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChh-hhcc--ccEEeehhhhHHHHHHHH
Confidence 3456766765555433355655566677899999999976655555444321111 1101 111112223334444667
Q ss_pred HHHHHHHhhheeeEEeCCCCCCcccCCCchhh
Q psy6052 83 IFQTLTLAICRHVAIRFPHKCSASCSESSCYI 114 (323)
Q Consensus 83 ~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~ 114 (323)
......||+||.+|+..|..|++..++-....
T Consensus 96 ~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~ 127 (273)
T PF10316_consen 96 SILALIIALDRVFAVYFPIFYHNYRKKIPNFI 127 (273)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCccccHHH
Confidence 78888999999999999999987544443333
No 29
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=97.61 E-value=0.00027 Score=57.61 Aligned_cols=73 Identities=10% Similarity=-0.079 Sum_probs=48.5
Q ss_pred cccccccceehhhHHHHHH-HHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHH
Q psy6052 219 KVEKRMDRTAHMLVAVLLL-FLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVT 296 (323)
Q Consensus 219 ~~~~~~~~~~~~~~~i~~~-f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~ 296 (323)
+.++-+++..|.+.+.+++ -+++..|-.+......+ + .+...+...........=+.+||+.-.+.-+.||++
T Consensus 236 ~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif-~----i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 236 KTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIF-G----IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHH-c----CChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 4455667777877777654 46778887666433222 1 122344445555556666899999999999999986
No 30
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.46 E-value=2.7e-05 Score=62.90 Aligned_cols=119 Identities=18% Similarity=0.086 Sum_probs=0.0
Q ss_pred ccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHHH
Q psy6052 3 GTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTIS 82 (323)
Q Consensus 3 g~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s 82 (323)
++++-++.+.++...|+.|+..+....||++++++..+..+.. ....... .....+. .|.....+..++..++
T Consensus 14 Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~-----~~~~~~~-~C~~~a~~~hy~~la~ 86 (242)
T PF00002_consen 14 SIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSP-----ISTTNHC-LCRAIAILLHYFFLAS 86 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhcccc-----ccccccc-cchhhhhHhHHHHHHH
Confidence 3444444444444334444556888899999999887743322 1111110 0001112 3777778888888777
Q ss_pred HHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccce
Q psy6052 83 IFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYF 132 (323)
Q Consensus 83 ~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~ 132 (323)
..=+.+.++|-|..+..+... .+++........|.++.++......
T Consensus 87 f~Wm~~~~~~l~~~~~~~~~~----~~~~~~~~~~~gwg~P~~iv~i~~~ 132 (242)
T PF00002_consen 87 FFWMLVEAFYLYRLLVKVFNS----SRRRFWWYYLIGWGIPALIVVISVA 132 (242)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHhheeEEEeecc----cchhhheeeeeeecCcceeeeeeee
Confidence 777888999999999887332 2455566777889988877665443
No 31
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.45 E-value=0.001 Score=56.02 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHhHHHHhh--hHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeCC
Q psy6052 23 PINRILTGLAVTDLLVMLE--YVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFP 100 (323)
Q Consensus 23 ~~~~~l~~La~~Dll~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p 100 (323)
...+++.+|..+++=-... .-...++..+...++.|+..+.+. .|.....+..++....++.-.++.+||.+|-..|
T Consensus 55 Tr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~-eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~ 133 (328)
T PF02117_consen 55 TRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSS-ECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFP 133 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecC-ceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3445555665555432221 112223444444555556655544 4545445566666777889999999999999888
Q ss_pred CCCC
Q psy6052 101 HKCS 104 (323)
Q Consensus 101 ~~~~ 104 (323)
-.+.
T Consensus 134 ~~~~ 137 (328)
T PF02117_consen 134 KYYS 137 (328)
T ss_pred hhhh
Confidence 6554
No 32
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.44 E-value=0.0027 Score=54.60 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=31.9
Q ss_pred cchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCC
Q psy6052 265 QPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKP 303 (323)
Q Consensus 265 ~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~ 303 (323)
.....+......+++.+=|.+-....++.|+++++.+..
T Consensus 283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~ 321 (365)
T PF03125_consen 283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPK 321 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhh
Confidence 344556777888889888999999999999999988764
No 33
>KOG4564|consensus
Probab=97.31 E-value=0.0012 Score=57.17 Aligned_cols=246 Identities=12% Similarity=0.085 Sum_probs=133.7
Q ss_pred EeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhh---cccccC---chhHHHHHHHHHHHHHHHHHHH-HH
Q psy6052 13 VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVR---SKLYFT---YAGSLFILIHMHFSQLLHTISI-FQ 85 (323)
Q Consensus 13 v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~---~~~~~~---~~~~~~c~~~~~~~~~~~~~s~-~~ 85 (323)
++..-|+.|-..|+.=.||.++=++-++..+............ ++..+. ..+...|+....+...+..++. |.
T Consensus 168 If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~Yf~~aNf~Wm 247 (473)
T KOG4564|consen 168 IFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQYFVLANFFWM 247 (473)
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3444566677889999999999998888644444333222110 000111 2344566665555555554443 33
Q ss_pred HH-HHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccccCcc
Q psy6052 86 TL-TLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNG 164 (323)
Q Consensus 86 l~-~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (323)
++ .+=+..-+++..+ . .+++-...+.+.|.+..++..+-.+..-.. ++. .|-+ ..+..
T Consensus 248 lvEGlYLhtLlv~~~~--s----er~~~~~y~~iGWG~P~v~v~~Wai~r~~~-----~d~-----~CW~-----~~~~~ 306 (473)
T KOG4564|consen 248 LVEGLYLHTLLVVAFF--S----ERRYFWLYLLIGWGVPAVFVVVWAIVRLYL-----EDT-----GCWD-----SNDTG 306 (473)
T ss_pred HHHHHHHHHhhheeec--c----CccHHHHHHHHhhCCcHHHhhhHHhHheee-----ccc-----cccc-----cCCCc
Confidence 33 3333444444432 1 256667788889999988887755433211 111 1111 11111
Q ss_pred hhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHHhhh
Q psy6052 165 LIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFP 244 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P 244 (323)
...-++ -.-.++++++-.+....|++.+-++-+..+ .....+.+|++|..++.+=.|-+..+.
T Consensus 307 ~~~WIi-----~gPi~~ai~vNf~flinIvrILv~KLr~~~------------~~~~~~y~K~vKaTLvLIPLfGI~~il 369 (473)
T KOG4564|consen 307 HIWWII-----RGPILLAILVNFIFLINIVRILVTKLRASN------------ASETDQYRKLVKATLVLIPLFGIHYIL 369 (473)
T ss_pred ceEEEE-----eccHHHHHHHHHHHHHHHHHHHHHHhcCcc------------ccchHHHHHHHHHHHHHHHHcCCeeEE
Confidence 111110 011133444455555666666654433221 122344778888888887777665443
Q ss_pred HHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 245 QGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
+. +.++.. ............+......+=-++|++.|+|.|.++||.+.+.+
T Consensus 370 f~-------~~P~~~--~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~ 421 (473)
T KOG4564|consen 370 FA-------FRPDED--TLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWR 421 (473)
T ss_pred EE-------ecCchH--HHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcC
Confidence 31 111111 12233344566778888888999999999999999999876554
No 34
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=97.26 E-value=0.011 Score=49.14 Aligned_cols=150 Identities=9% Similarity=0.162 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeee--eeeeeecCCCc
Q psy6052 70 IHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSI--REIQIWESGKL 147 (323)
Q Consensus 70 ~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (323)
+..++...+.+.+...-++.++-|.+.+..|.++.+. .++-.+..+-.+.+++++.++|.....+. +.+..+.-|.-
T Consensus 105 ~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~fGAI 183 (307)
T PF10322_consen 105 ILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPFGAI 183 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCCCEE
Confidence 3446777788999999999999999999999988653 44444566777778888888886654432 11211122211
Q ss_pred eeeEEeeeccccccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccce
Q psy6052 148 EALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRT 227 (323)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (323)
....+ ....+... ..........-.+.+++++..++.++|+.+.+....++ ++++++.|+..
T Consensus 184 --~I~~~-----~~~~~~~~----~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l~~~~~-------s~~~~KAE~SL 245 (307)
T PF10322_consen 184 --IITST-----GSWFNIRN----SIFHLFFSIFWMISIIILNILMFFKLRKLKSSLSSQRR-------SKQSRKAERSL 245 (307)
T ss_pred --EEEEE-----cccccchh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh-------cccchhhheeH
Confidence 11111 11111111 12223333445566777899999999987631111111 23334555555
Q ss_pred ehhhHHHHHHH
Q psy6052 228 AHMLVAVLLLF 238 (323)
Q Consensus 228 ~~~~~~i~~~f 238 (323)
+.++..+.+-+
T Consensus 246 T~Tmi~mliP~ 256 (307)
T PF10322_consen 246 TLTMISMLIPY 256 (307)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 35
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=95.71 E-value=0.18 Score=41.49 Aligned_cols=118 Identities=18% Similarity=0.141 Sum_probs=59.7
Q ss_pred cccccceeeEEEe-ecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVL-THKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHT 80 (323)
Q Consensus 2 ig~~gN~~vi~v~-~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 80 (323)
++++|.++.+.-+ ..-|.++.++-.++..+.++++...+=.+ ...++.. .|.. ..|-+...+......
T Consensus 3 ~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INai-------IW~~n~~-~~~~---~wCDI~~kl~~~~~~ 71 (283)
T PF02076_consen 3 FSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAI-------IWRDNDI-NWWP---VWCDISTKLIIGSSV 71 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhh-------hcCCCCC-ccCc---eeeeehHHHHHHHHH
Confidence 4556666665443 33466678888999999999987766211 1111222 2222 345454444333332
Q ss_pred HHHHHHHHHhhheeeE-EeCCCCCC--cccCCCchhhhhHHHHHHHHHhhcccce
Q psy6052 81 ISIFQTLTLAICRHVA-IRFPHKCS--ASCSESSCYISVLVAYILPILICAPSYF 132 (323)
Q Consensus 81 ~s~~~l~~iaidRy~a-i~~p~~~~--~~~~~~~~~~~i~~~w~~~~~~~~~~~~ 132 (323)
. ...+..++-|.++ |..+-+.. +.-++|+...=...++.+.++.....++
T Consensus 72 g--~~~a~lcI~r~L~~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yi 124 (283)
T PF02076_consen 72 G--IPAASLCIMRRLYRIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYI 124 (283)
T ss_pred H--HHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2333333444333 22222211 1113566666677777777766555443
No 36
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=95.38 E-value=0.02 Score=36.51 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=49.1
Q ss_pred cccccceehhhHHHHHHHHHHhh-hHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHH
Q psy6052 221 EKRMDRTAHMLVAVLLLFLITEF-PQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQF 293 (323)
Q Consensus 221 ~~~~~~~~~~~~~i~~~f~i~~~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~f 293 (323)
+++-+|.++.+++=-++|+++|+ |...- .+....+ ........+..++..+..+|+.+|-++|.++-+.-
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~-~~~~~~~--~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAH-RMQYMYE--IGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc--cCCCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 34456778889999999999999 76543 3332211 11223456677888899999999999999876543
No 37
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=94.67 E-value=0.096 Score=38.31 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccce
Q psy6052 75 SQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYF 132 (323)
Q Consensus 75 ~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~ 132 (323)
..++.....+..++|+++|-.++.+|++...+.|.+|.+..+.++.+..+..-+.+++
T Consensus 51 ~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 51 GTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred ehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 3444556677888999999999999999987889999999888777766665555443
No 38
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=92.07 E-value=0.6 Score=36.72 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=34.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeCCCCCCc
Q psy6052 59 YFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSA 105 (323)
Q Consensus 59 ~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~ 105 (323)
+...+...+. .......+..+.+++.-..+++||++|.....+|.+
T Consensus 77 dLiI~~~~~K-~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~ 122 (236)
T PF02175_consen 77 DLIIDPTLFK-YGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYEN 122 (236)
T ss_pred eEEEchHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 4444444444 444566777888999999999999999999888875
No 39
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=87.69 E-value=8.2 Score=32.71 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeee
Q psy6052 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSI 136 (323)
Q Consensus 66 ~~c~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~ 136 (323)
..|.....+.+++..++..=-+.+++.=|++....-.... -.++....=...|.++.+.++.......+
T Consensus 92 ~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~V 160 (328)
T PF01534_consen 92 SSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALRKV 160 (328)
T ss_pred CchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhccc
Confidence 4566655566666555544455568888888765433222 23555666788999999888776654443
No 40
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=75.40 E-value=23 Score=27.50 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeCCCCC
Q psy6052 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKC 103 (323)
Q Consensus 66 ~~c~~~~~~~~~~~~~s~~~l~~iaidRy~ai~~p~~~ 103 (323)
..|.+..-+............+++|+|||+-|+.-.|-
T Consensus 115 ~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl 152 (226)
T PF06681_consen 115 FVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRL 152 (226)
T ss_pred EeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccC
Confidence 34544333333333444555667999999999864443
No 41
>KOG4289|consensus
Probab=57.54 E-value=1.1e+02 Score=31.84 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=37.2
Q ss_pred cceehhhHHHHHHHHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHH
Q psy6052 225 DRTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFG 298 (323)
Q Consensus 225 ~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~ 298 (323)
.+..+..+++.+..-.+|+-.. +.. ......++++...+..+...+--+.|+..|.+.|++++
T Consensus 2337 v~~lq~~fl~llllsatwl~~l----l~v-------n~~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2337 VSVLQHSFLLLLLLSATWLLGL----LAV-------NPDPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH----Hhc-------CCchHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 3455555555555555555321 111 12233445555556666666666778899999999988
No 42
>PF13853 7tm_4: Olfactory receptor
Probab=57.48 E-value=0.37 Score=35.30 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccc--cCcchhhhHHHhHHHhhHhhhhHHHHHHHHH
Q psy6052 114 ISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAK--ENNGLIFSLHFWMYSVCIKLLPCLVLSVISY 191 (323)
Q Consensus 114 ~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~ 191 (323)
.+..+.|..++....+......... ..+.. ..++.| .+... ..+....+.............|+.++.+.|.
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~~~~l~----~~nii-~~f~c~-~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~ 78 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLLTLSLC----FCNII-HHFCCD-PPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYI 78 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHHHeeCC----CCCCC-cceeeC-HHHhcccCCchhhhheeeecccceeEEEEeecccccee
Confidence 4556678877776666543221111 11111 122222 11111 2222333333334445556889999999999
Q ss_pred HHHHHHHHhh
Q psy6052 192 YLIGALRQAS 201 (323)
Q Consensus 192 ~i~~~l~~~~ 201 (323)
+|+..+.|..
T Consensus 79 ~Il~avlki~ 88 (144)
T PF13853_consen 79 RILRAVLKIP 88 (144)
T ss_pred EEEehhhccc
Confidence 9999887754
No 43
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=46.55 E-value=1.6e+02 Score=23.91 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=20.7
Q ss_pred cccccceehhhHHHHHHHHHHhhhHHHHHHH
Q psy6052 221 EKRMDRTAHMLVAVLLLFLITEFPQGILALL 251 (323)
Q Consensus 221 ~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~ 251 (323)
.+.+++.-+........+.+...+..+....
T Consensus 89 ~~~~~~~~r~~~~~~i~~~i~~i~~~~~l~~ 119 (248)
T PF11368_consen 89 EEYYRKMNRKLEYATIFFNISIIISFLSLFI 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777776665555
No 44
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=45.32 E-value=35 Score=22.98 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHhhccc
Q psy6052 180 LLPCLVLSVISYYLIGALRQASKRKHQLKS 209 (323)
Q Consensus 180 ~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~ 209 (323)
+.+++++.++|..+.|--|++.++++++-.
T Consensus 13 l~~vl~~~ifyFli~RPQrKr~K~~~~ml~ 42 (97)
T COG1862 13 LPLVLIFAIFYFLIIRPQRKRMKEHQELLN 42 (97)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 334455667788788877777776665443
No 45
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=42.78 E-value=60 Score=21.05 Aligned_cols=23 Identities=9% Similarity=0.436 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHhh
Q psy6052 184 LVLSVISYYLIGALRQASKRKHQ 206 (323)
Q Consensus 184 ~~~~~~~~~i~~~l~~~~~~~~~ 206 (323)
+++.+.|..+.+.-+|+.++.++
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~~~~ 32 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKEHQE 32 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHhhheecHHHHHHHHHHH
Confidence 45555666666655555554443
No 46
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=37.45 E-value=37 Score=23.64 Aligned_cols=26 Identities=4% Similarity=0.298 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHhh
Q psy6052 181 LPCLVLSVISYYLIGALRQASKRKHQ 206 (323)
Q Consensus 181 lp~~~~~~~~~~i~~~l~~~~~~~~~ 206 (323)
+|++++...+..+++--+|+.++++.
T Consensus 7 l~~vv~~~i~yf~iRPQkKr~Ke~~e 32 (113)
T PRK06531 7 IMFVVMLGLIFFMQRQQKKQAQERQN 32 (113)
T ss_pred HHHHHHHHHHHheechHHHHHHHHHH
Confidence 34444443333345544444444443
No 47
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=32.53 E-value=57 Score=21.31 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHhhccc
Q psy6052 185 VLSVISYYLIGALRQASKRKHQLKS 209 (323)
Q Consensus 185 ~~~~~~~~i~~~l~~~~~~~~~~~~ 209 (323)
++.+.|..+.+--+|+.++.+++..
T Consensus 12 ~~~i~yf~~~rpqkK~~k~~~~m~~ 36 (84)
T TIGR00739 12 IFLIFYFLIIRPQRKRRKAHKKLIE 36 (84)
T ss_pred HHHHHHHheechHHHHHHHHHHHHH
Confidence 3456677777666666665554433
No 48
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=31.76 E-value=81 Score=21.83 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=14.6
Q ss_pred hhhHHH-HHHHHHHHHHHHHHhhHHHhhc
Q psy6052 180 LLPCLV-LSVISYYLIGALRQASKRKHQL 207 (323)
Q Consensus 180 ~lp~~~-~~~~~~~i~~~l~~~~~~~~~~ 207 (323)
++|+++ +.++|..+.+--+|+.++++.+
T Consensus 7 ll~lv~i~~i~yF~~iRPQkKr~K~~~~m 35 (109)
T PRK05886 7 FLPFLLIMGGFMYFASRRQRKAMQATIDL 35 (109)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 345443 4556666666555555544433
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=30.82 E-value=30 Score=22.44 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=16.4
Q ss_pred HHHhhHhhhhHHHHHHHHHHHHHHHHH
Q psy6052 173 MYSVCIKLLPCLVLSVISYYLIGALRQ 199 (323)
Q Consensus 173 ~~~~~~~~lp~~~~~~~~~~i~~~l~~ 199 (323)
++.+++.+.|+.++.+.|..=.+..++
T Consensus 23 I~s~l~Cc~PlGi~Ai~~s~kv~~~~~ 49 (82)
T PF04505_consen 23 IFSTLCCCWPLGIVAIVYSSKVRSRYA 49 (82)
T ss_pred HHHHHHHHhhHHHHHheechhhHHHHH
Confidence 334445567888888877764444433
No 50
>PHA03164 hypothetical protein; Provisional
Probab=29.97 E-value=56 Score=20.55 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=18.1
Q ss_pred CcCcCchHHHHHHHHHHhHHHHhh
Q psy6052 18 ELSATPINRILTGLAVTDLLVMLE 41 (323)
Q Consensus 18 ~~~~~~~~~~l~~La~~Dll~~~~ 41 (323)
+++++-+.+.+..||++-+++.++
T Consensus 53 nrRktftFlvLtgLaIamILfiif 76 (88)
T PHA03164 53 NRRKTFTFLVLTGLAIAMILFIIF 76 (88)
T ss_pred hhhheeehHHHHHHHHHHHHHHHH
Confidence 445577788899999988877653
No 51
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=25.79 E-value=1e+02 Score=16.23 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=14.5
Q ss_pred HHHhhHhhhhHHHHHHHHHH
Q psy6052 173 MYSVCIKLLPCLVLSVISYY 192 (323)
Q Consensus 173 ~~~~~~~~lp~~~~~~~~~~ 192 (323)
+...++..+|.+.+++.|++
T Consensus 9 iAt~Lfi~iPt~FLlilYvq 28 (35)
T PRK04989 9 VASLLFVLVPTVFLIILYIQ 28 (35)
T ss_pred HHHHHHHHHHHHHHHHHhee
Confidence 34455668899888888865
No 52
>PF15102 TMEM154: TMEM154 protein family
Probab=24.55 E-value=30 Score=25.22 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=10.2
Q ss_pred hhHhhhhHHHHHHHHHHHHHHH
Q psy6052 176 VCIKLLPCLVLSVISYYLIGAL 197 (323)
Q Consensus 176 ~~~~~lp~~~~~~~~~~i~~~l 197 (323)
++..++|.+++++.-..++..+
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv 79 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLV 79 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHhe
Confidence 3344667555444444444333
No 53
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=24.31 E-value=1.2e+02 Score=15.76 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=14.4
Q ss_pred HHHhhHhhhhHHHHHHHHHH
Q psy6052 173 MYSVCIKLLPCLVLSVISYY 192 (323)
Q Consensus 173 ~~~~~~~~lp~~~~~~~~~~ 192 (323)
+...++..+|.+.+++.|++
T Consensus 9 iAt~Lfi~iPt~FLiilYvq 28 (33)
T TIGR03038 9 IATLLFILVPTVFLLILYIQ 28 (33)
T ss_pred HHHHHHHHHHHHHHHHHhee
Confidence 34455668898888888865
No 54
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=24.17 E-value=3.8e+02 Score=23.53 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhccc
Q psy6052 179 KLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRC 258 (323)
Q Consensus 179 ~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~ 258 (323)
..++.++..+........+.++.+.. .+--+.......-+.-+++...|..++.++.....+.
T Consensus 137 ~~L~ivvfai~~G~al~~~~~~~~~~-----------------~~~~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~~ 199 (390)
T PF00375_consen 137 NILGIVVFAILFGVALGRLGEKGKPL-----------------IDFFESLNEVIMKIINWIMKLAPIGVFGLIANSIATQ 199 (390)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSHHH-----------------HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSS
T ss_pred ccchhhhHHHHHHHHHHHHhhhhhhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46787777777777776665533221 1222334455566667788899999988886665443
Q ss_pred cccccccchhhHHH-HH-HHh-hhhhhhhhhh-hcCHHHHHHHHHh
Q psy6052 259 FFESCYQPYGEVMD-IL-ALL-NGAINFILYC-SMSRQFRVTFGQL 300 (323)
Q Consensus 259 ~~~~~~~~~~~~~~-~l-~~~-~~~~nP~iY~-~~~~~fR~~~~~~ 300 (323)
..+........+.. .+ ..+ -..+.|+++. ...++..+-++++
T Consensus 200 ~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~ 245 (390)
T PF00375_consen 200 GLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAM 245 (390)
T ss_dssp CCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHH
Confidence 32222222111111 11 112 2567888888 5555666666654
No 55
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=22.79 E-value=1.7e+02 Score=17.59 Aligned_cols=30 Identities=10% Similarity=0.270 Sum_probs=19.7
Q ss_pred ccccceehhhHHHHHHHHHHhhhHHHHHHH
Q psy6052 222 KRMDRTAHMLVAVLLLFLITEFPQGILALL 251 (323)
Q Consensus 222 ~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~ 251 (323)
+...+.++.++++.+++++.-+-|....-+
T Consensus 4 k~~~~mtriVLLISfiIlfgRl~Y~~I~a~ 33 (59)
T PF11119_consen 4 KKNSRMTRIVLLISFIILFGRLIYSAIGAW 33 (59)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445577788888777777776666554444
No 56
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.37 E-value=2.8e+02 Score=27.27 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=38.4
Q ss_pred HHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHHhhhHHHH
Q psy6052 169 LHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGIL 248 (323)
Q Consensus 169 ~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~ 248 (323)
.+-+...++...+.++++++.+..+..-..-.+++... ..+.-.+.....-.++.+.++|+++|+-..+.
T Consensus 411 ~yR~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p----------~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~ 480 (806)
T PF05478_consen 411 SYRWIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRADP----------TDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLV 480 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC----------cccCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555556555432222211 11222334445567778888888888876665
Q ss_pred HHH
Q psy6052 249 ALL 251 (323)
Q Consensus 249 ~~~ 251 (323)
.+.
T Consensus 481 ~~~ 483 (806)
T PF05478_consen 481 LFY 483 (806)
T ss_pred HHH
Confidence 444
No 57
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=21.96 E-value=1.6e+02 Score=16.39 Aligned_cols=26 Identities=12% Similarity=0.200 Sum_probs=14.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHh
Q psy6052 180 LLPCLVLSVISYYLIGALRQASKRKH 205 (323)
Q Consensus 180 ~lp~~~~~~~~~~i~~~l~~~~~~~~ 205 (323)
++-+.+....=..|++++++.+.+.+
T Consensus 12 vIil~If~~iGl~IyQkikqIrgKkk 37 (49)
T PF11044_consen 12 VIILGIFAWIGLSIYQKIKQIRGKKK 37 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444455667777777665443
No 58
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.87 E-value=1.5e+02 Score=20.47 Aligned_cols=28 Identities=18% Similarity=0.475 Sum_probs=14.8
Q ss_pred hhHHH-HHHHHHHHHHHHHHhhHHHhhcc
Q psy6052 181 LPCLV-LSVISYYLIGALRQASKRKHQLK 208 (323)
Q Consensus 181 lp~~~-~~~~~~~i~~~l~~~~~~~~~~~ 208 (323)
+|+++ +.+.|..+.+--+|++++.+.+.
T Consensus 22 l~lvii~~i~yf~~~RpqkK~~k~~~~~~ 50 (106)
T PRK05585 22 LPLVVFFAIFYFLIIRPQQKRQKEHKKML 50 (106)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34433 33456666666666665554443
Done!