Query psy6052
Match_columns 323
No_of_seqs 234 out of 1350
Neff 11.2
Searched_HMMs 29240
Date Sat Aug 17 01:16:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 100.0 2.1E-49 7.3E-54 353.0 12.5 294 2-306 45-490 (510)
2 3vw7_A Proteinase-activated re 100.0 1.7E-45 5.7E-50 326.7 6.2 295 2-309 33-471 (484)
3 2rh1_A Beta-2-adrenergic recep 100.0 1.4E-44 4.7E-49 321.6 10.5 285 2-307 53-481 (500)
4 3eml_A Human adenosine A2A rec 100.0 3.7E-45 1.3E-49 324.8 6.0 296 2-309 34-473 (488)
5 3uon_A Human M2 muscarinic ace 100.0 4.6E-44 1.6E-48 316.0 12.8 283 2-306 36-461 (467)
6 2ks9_A Substance-P receptor; w 100.0 1.5E-43 5.3E-48 302.9 13.4 280 2-305 45-324 (364)
7 1u19_A Rhodopsin; G protein-co 100.0 1.5E-43 5.2E-48 301.1 11.0 277 2-306 51-327 (349)
8 3odu_A C-X-C chemokine recepto 100.0 1.8E-44 6E-49 321.5 5.2 287 2-308 61-498 (502)
9 3rze_A Histamine H1 receptor, 100.0 5.8E-43 2E-47 307.7 14.0 283 2-306 21-446 (452)
10 4eiy_A Adenosine receptor A2A/ 100.0 7.1E-45 2.4E-49 319.5 1.4 297 2-310 44-433 (447)
11 3v2y_A Sphingosine 1-phosphate 100.0 1.7E-42 5.8E-47 309.4 16.1 279 2-307 76-497 (520)
12 4amj_A Beta-1 adrenergic recep 100.0 1.9E-44 6.4E-49 302.4 2.6 280 2-305 24-303 (315)
13 2lnl_A C-X-C chemokine recepto 100.0 3.4E-43 1.2E-47 292.2 9.3 266 2-304 24-295 (296)
14 4dkl_A MU-type opioid receptor 100.0 2.2E-43 7.6E-48 311.4 7.6 286 2-305 30-458 (464)
15 3pbl_A D(3) dopamine receptor, 100.0 7.8E-43 2.7E-47 309.3 10.0 276 2-305 51-474 (481)
16 2z73_A Rhodopsin; visual pigme 100.0 3.1E-42 1.1E-46 302.7 13.3 282 2-302 47-331 (448)
17 4ea3_A Fusion protein of nocic 100.0 3.8E-42 1.3E-46 300.8 11.3 277 2-307 138-414 (434)
18 3sn6_R Lysozyme, beta-2 adrene 100.0 3.3E-42 1.1E-46 307.4 6.3 285 2-306 195-494 (514)
19 2koe_A Human cannabinoid recep 98.9 6E-10 2E-14 61.5 2.9 37 268-304 3-39 (40)
20 1hll_A Alpha-2A adrenergic rec 98.6 2.3E-09 8E-14 55.8 -1.7 31 81-111 2-32 (32)
21 2ki9_A Cannabinoid receptor 2; 98.1 6.8E-07 2.3E-11 46.4 0.7 29 224-252 1-29 (33)
22 2lot_A Apelin receptor; membra 88.0 0.033 1.1E-06 33.1 -2.0 20 1-20 40-59 (64)
23 2rdd_B UPF0092 membrane protei 74.3 6.4 0.00022 20.3 3.9 26 180-205 6-32 (37)
24 4ea3_A Fusion protein of nocic 61.3 39 0.0014 28.5 8.6 33 278-310 381-413 (434)
25 2ket_A Cathelicidin-6; antimic 50.9 8.8 0.0003 17.2 1.4 13 291-303 4-16 (27)
26 4amj_A Beta-1 adrenergic recep 39.8 28 0.00096 27.5 4.0 38 271-309 266-303 (315)
27 3sn6_R Lysozyme, beta-2 adrene 30.8 1.9E+02 0.0065 24.9 8.1 38 272-310 457-494 (514)
28 2ks9_A Substance-P receptor; w 26.3 1.2E+02 0.0042 24.4 5.9 36 273-308 288-323 (364)
29 3arc_M Photosystem II reaction 26.1 73 0.0025 16.2 3.0 20 174-193 10-29 (36)
30 2z73_A Rhodopsin; visual pigme 22.0 24 0.00081 30.0 0.6 35 271-305 296-330 (448)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=100.00 E-value=2.1e-49 Score=352.98 Aligned_cols=294 Identities=17% Similarity=0.200 Sum_probs=215.5
Q ss_pred cccccceeeEEEeecCCc---CcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKEL---SATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLL 78 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~---~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 78 (323)
+|++||+++++++.++++ +++++|+|++|||++|++.+++.+|+.+....... . .|.+|.. .|.+..++..++
T Consensus 45 ~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~--~-~w~~g~~-~C~~~~~~~~~~ 120 (510)
T 4grv_A 45 VGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVH--H-PWAFGDA-GCRGYYFLRDAC 120 (510)
T ss_dssp HHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--S-SCSSHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--C-CEEhhHH-HHHHHHHHHHHH
Confidence 689999999988877654 34788999999999999999999999887655321 1 6888854 577778999999
Q ss_pred HHHHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccc
Q psy6052 79 HTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPL 158 (323)
Q Consensus 79 ~~~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (323)
..+|++++++||+|||+||++|++|++..+++++..+++++|++++++++|+++.++...............|...
T Consensus 121 ~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~---- 196 (510)
T 4grv_A 121 TYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPI---- 196 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEEC----
T ss_pred HHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccc----
Confidence 9999999999999999999999999999999999999999999999999999988776554322222222233322
Q ss_pred cccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhcccc----------------------------
Q psy6052 159 AKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSK---------------------------- 210 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~---------------------------- 210 (323)
........+..+..++.+++|+++++++|.+|+++++++.+.....+..
T Consensus 197 ---~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (510)
T 4grv_A 197 ---VDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPS 273 (510)
T ss_dssp ---SCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHHHHHHHHTCCEEEEEECTTSCEEEETTEECCCSSS
T ss_pred ---cccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccccccccccCCCCC
Confidence 2233445555566677899999999999999999998643321110000
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 211 -------------------------------------------------------------------------------- 210 (323)
Q Consensus 211 -------------------------------------------------------------------------------- 210 (323)
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (510)
T 4grv_A 274 LNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSL 353 (510)
T ss_dssp HHHHHHSCCC---CCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCSHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCccccccCcCCCCCCCCcccCCccccccCCCCcccccccccCCCCCCCcCccccccccccCCccccCCCCCCCCCCccc
Confidence
Q ss_pred -------------------------------------CCCCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHh
Q psy6052 211 -------------------------------------SGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSG 253 (323)
Q Consensus 211 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~ 253 (323)
.....+..+..++|+|++|++++++++|++||+|+.+..++..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~ 433 (510)
T 4grv_A 354 RMLNNKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSGSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFC 433 (510)
T ss_dssp HHHTTTCHHHHHHHHHSSCSCCSSHHHHHHHHHHHHHSSSGGGTTSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcccccccccccccccCCccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011223456789999999999999999999999999887
Q ss_pred hhccccccc----cccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcc
Q psy6052 254 ILGRCFFES----CYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNV 306 (323)
Q Consensus 254 ~~~~~~~~~----~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~ 306 (323)
+.++..... ....+..++.+|+++||++||+||+++|++||++++++++|++.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~C~ 490 (510)
T 4grv_A 434 YISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACLCP 490 (510)
T ss_dssp TTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC----------
T ss_pred HcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCC
Confidence 765433221 22345567889999999999999999999999999999987653
No 2
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-45 Score=326.68 Aligned_cols=295 Identities=16% Similarity=0.145 Sum_probs=206.1
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|+|++|||++|++.++ .+|.........+ .|.++. ..|.+..++..++..+
T Consensus 33 ~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~-~~~~~~~~~~~~~----~~~~~~-~~C~~~~~~~~~~~~~ 106 (484)
T 3vw7_A 33 VSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVS-VLPFKISYYFSGS----DWQFGS-ELCRFVTAAFYCNMYA 106 (484)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHTTS----CCCSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC----Ccccch-hHHhHHHHHHHHHHHH
Confidence 689999999999988888889999999999999999987 4676665554432 687775 5677778999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||+||++|++|++.++++++..+++++|++++++++|+++.+..... ++.....|...+. ..
T Consensus 107 S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~----~~~~~~~C~~~~~---~~ 179 (484)
T 3vw7_A 107 SILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQV----PGLGITTCHDVLS---ET 179 (484)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEE----TTTTEEEESSSCS---SC
T ss_pred HHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhcccc----CCCCCceeeccCC---cc
Confidence 9999999999999999999999988899999999999999999999998876654332 1222222322211 11
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCC--------C--------------------
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSG--------T-------------------- 213 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~--------~-------------------- 213 (323)
.....+..+.....++.+++|+++++++|..|++.+++++++.+..+..+. .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~ 259 (484)
T 3vw7_A 180 LLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNA 259 (484)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHCCEEEEEECTTSCEEEETTEEEESSSCHHH
T ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHHhhhhccchhhhhccccccceeeeccccccCCcchhc
Confidence 123344445566667889999999999999999999987743221100000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 214 -------------------------------------------------------------------------------- 213 (323)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (323)
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 339 (484)
T 3vw7_A 260 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRML 339 (484)
T ss_dssp HHHHHHHHHTSCCSSBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred ccccccccccccCCCCCCcccccccccccccccccccccccccCcccccccccccchhhccccccCccccccchhhhhhh
Confidence
Q ss_pred -----------------------------------CCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhc-c
Q psy6052 214 -----------------------------------PCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILG-R 257 (323)
Q Consensus 214 -----------------------------------~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~-~ 257 (323)
+.+...+.++++|++|++++++++|++||+|+.+..++..+.. .
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~ 419 (484)
T 3vw7_A 340 QQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYANRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSH 419 (484)
T ss_dssp HTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTT
T ss_pred hccchhhhhhhhhhhhhhccCcccccCccceeecchhccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 0000013445679999999999999999999999998876542 2
Q ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcccce
Q psy6052 258 CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGK 309 (323)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~ 309 (323)
............++.++.++|+++||+||+++|++||++++++++|++.+..
T Consensus 420 ~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~~~~~~~~ 471 (484)
T 3vw7_A 420 TSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCKESSDP 471 (484)
T ss_dssp CTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC----------------
T ss_pred ccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHhhccCCCc
Confidence 2223334456668899999999999999999999999999999988774443
No 3
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=100.00 E-value=1.4e-44 Score=321.60 Aligned_cols=285 Identities=17% Similarity=0.192 Sum_probs=212.5
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|+|++|||++|++.+++.+|+.+...... .|.++. ..|.+..++..++..+
T Consensus 53 ~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~~-----~w~~~~-~~C~~~~~~~~~~~~~ 126 (500)
T 2rh1_A 53 AIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMK-----MWTFGN-FWCEFWTSIDVLCVTA 126 (500)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT-----SCCSHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcCCc-chhhHHHHHHHHHHHH
Confidence 6899999999999888888899999999999999999998899988776653 788885 4567778899999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhc-ccceeeeeeeeeeecCCCceeeEEeeeccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICA-PSYFVFSIREIQIWESGKLEALYQLHLSPLAK 160 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (323)
|++++++||+|||+||++|++|++.++++++..+++++|++++++++ |.++.+.... ..+. ..|..++ .
T Consensus 127 Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~----~~~~--~~c~~~~----~ 196 (500)
T 2rh1_A 127 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRAT----HQEA--INCYAEE----T 196 (500)
T ss_dssp HHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC----SHHH--HHHHHCT----T
T ss_pred HHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeeccc----ccCc--ceecccc----c
Confidence 99999999999999999999999889999999999999999999985 4433222110 0000 0011110 0
Q ss_pred cCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhcccc-----------CC-----------------
Q psy6052 161 ENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSK-----------SG----------------- 212 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~-----------~~----------------- 212 (323)
.........+.....++.+++|+++++++|.+|++.++++.++.+..+.. .+
T Consensus 197 ~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (500)
T 2rh1_A 197 CCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLN 276 (500)
T ss_dssp CCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHTCCEEEEEECTTSCEEEETTEEEESCSCHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCCCCCCCccccc
Confidence 00111123344455667789999999999999999999876551110000 00
Q ss_pred -----------C--------------------------------------------------------------------
Q psy6052 213 -----------T-------------------------------------------------------------------- 213 (323)
Q Consensus 213 -----------~-------------------------------------------------------------------- 213 (323)
+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (500)
T 2rh1_A 277 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRM 356 (500)
T ss_dssp HHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHHSCHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccccccccccCCCCCCccchhhhhhcccCCccccccccccCCCCCCCCCcccccccchhhcccCCCCccccccccCchhh
Confidence 0
Q ss_pred ------------------------------------CCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhcc
Q psy6052 214 ------------------------------------PCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGR 257 (323)
Q Consensus 214 ------------------------------------~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~ 257 (323)
..+..+..++|+|+++++++++++|++||+|+.+..++..+.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~ 436 (500)
T 2rh1_A 357 LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN 436 (500)
T ss_dssp HHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred hhcccccccccccccccccCCCCcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 00011112467899999999999999999999999988877532
Q ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCccc
Q psy6052 258 CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVL 307 (323)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~ 307 (323)
.....+..+..++.++||++||+||++ |++||++++++++|++.+
T Consensus 437 ----~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~~~~~ 481 (500)
T 2rh1_A 437 ----LIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRRSS 481 (500)
T ss_dssp ----SSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC----
T ss_pred ----cccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhhhccC
Confidence 224456678899999999999999986 999999999999876543
No 4
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=100.00 E-value=3.7e-45 Score=324.75 Aligned_cols=296 Identities=17% Similarity=0.148 Sum_probs=221.5
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.+++.+|+.+.... .|.++. ..|.+..++..++..+
T Consensus 34 ~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~-------~~~~~~-~~C~~~~~~~~~~~~~ 105 (488)
T 3eml_A 34 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST-------GFCAAC-HGCLFIACFVLVLTQS 105 (488)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT-------CCEECH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccccc-hHHHHHHHHHHHHHHH
Confidence 68999999999998888888999999999999999999989998876543 666664 4577888999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||++|++|++|++..+++++..+++++|++++++++|+++++........... ....|..++.. +..
T Consensus 106 s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~c~~~~~~-~~~ 183 (488)
T 3eml_A 106 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKN-HSQGCGEGQVA-CLF 183 (488)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSSCC--------CCSSCTTCEE-CCH
T ss_pred HHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc-cccccccccce-eec
Confidence 9999999999999999999999999999999999999999999999999886654332110000 00111111000 000
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCC----------------------------
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGT---------------------------- 213 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---------------------------- 213 (323)
........+.....++.+++|+++++++|..|+++++++.++.+..+.....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (488)
T 3eml_A 184 EDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNA 263 (488)
T ss_dssp HHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCEEEEEECTTSCEEEETTEEEESSSCHHH
T ss_pred cccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhccccccchhhccccccceeccccccCCCCccccc
Confidence 1112223334445677789999999999999999999876554322110000
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 214 -------------------------------------------------------------------------------- 213 (323)
Q Consensus 214 -------------------------------------------------------------------------------- 213 (323)
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (488)
T 3eml_A 264 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRML 343 (488)
T ss_dssp HHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHHCHHHHTTCHHHHHHH
T ss_pred cccccccCCCCCCCCCCChhhhccCcccCccccccccCCCCCCCCCcCCcchHHHhhhhccccCCCCCCccCCCCcchhh
Confidence
Q ss_pred ------------------------------------CCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhcc
Q psy6052 214 ------------------------------------PCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGR 257 (323)
Q Consensus 214 ------------------------------------~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~ 257 (323)
.....+..++++|+++++++++++|++||+|+.++.++..+.++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~ 423 (488)
T 3eml_A 344 QQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD 423 (488)
T ss_dssp HTTCHHHHHHHHTTSHHHHHCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhccccccccCcccccCcccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCc
Confidence 00001123577899999999999999999999999988877543
Q ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcccce
Q psy6052 258 CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGK 309 (323)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~ 309 (323)
. ......+..+..++.++|+++||+||++++++||+++++++++++.+.+
T Consensus 424 ~--~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~~~~~~ 473 (488)
T 3eml_A 424 C--SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ 473 (488)
T ss_dssp S--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTSCC-
T ss_pred c--ccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhcccccC
Confidence 2 2345556678889999999999999999999999999999987664443
No 5
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=100.00 E-value=4.6e-44 Score=316.03 Aligned_cols=283 Identities=15% Similarity=0.199 Sum_probs=220.0
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.+++.+|..+...... .|.++. ..|.+..++..++..+
T Consensus 36 ~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~-----~~~~~~-~~C~~~~~~~~~~~~~ 109 (467)
T 3uon_A 36 VTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIG-----YWPLGP-VVCDLWLALDYVVSNA 109 (467)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS-----SCCSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CccCCc-chHhHHHHHHHHHHHH
Confidence 6899999999999888888899999999999999999998999888776653 788775 4577888999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||++|++|++|++..+++++..+++++|++++++++|+++.+...... .......|..++.
T Consensus 110 s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~C~~~~~----- 181 (467)
T 3uon_A 110 SVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGV---RTVEDGECYIQFF----- 181 (467)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCCCSSCCCCGGG-----
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---cCCCCCcceeecC-----
Confidence 99999999999999999999999999999999999999999999999988765432211 1111112222211
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCC-----------------------------
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSG----------------------------- 212 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----------------------------- 212 (323)
....+.....++.+++|+++++++|..|++.++++.++.+.......
T Consensus 182 ----~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (467)
T 3uon_A 182 ----SNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNA 257 (467)
T ss_dssp ----GSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHSCCEEEEEECTTSCEEEETTEECCCCSSHHH
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcccccceeeccchhhcccccCcccccCCcccc
Confidence 12234455667778999999999999999999987653332110000
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 213 -------------------------------------------------------------------------------- 212 (323)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (323)
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (467)
T 3uon_A 258 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRML 337 (467)
T ss_dssp HHHHHHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred cccccccccccCCCCcccccccccccccccchhhcccccCCCCCccccccccccccccccceeeccccCCCccccccchh
Confidence
Q ss_pred ----------------------------------CCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhccc
Q psy6052 213 ----------------------------------TPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRC 258 (323)
Q Consensus 213 ----------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~ 258 (323)
......+..++|+|+++++++++++|++||+|+.+..++..+.+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~- 416 (467)
T 3uon_A 338 QQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP- 416 (467)
T ss_dssp HTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST-
T ss_pred hhcCccccccccccccccCCCCcccccccchhhcccccccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence 000112223578999999999999999999999999988876443
Q ss_pred cccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcc
Q psy6052 259 FFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNV 306 (323)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~ 306 (323)
........+..++.++|+++||+||+++|++||++++++++|+++
T Consensus 417 ---~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~~ 461 (467)
T 3uon_A 417 ---CIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYK 461 (467)
T ss_dssp ---TSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC----
T ss_pred ---ccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhhhcc
Confidence 234566778899999999999999999999999999999987663
No 6
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=100.00 E-value=1.5e-43 Score=302.86 Aligned_cols=280 Identities=18% Similarity=0.203 Sum_probs=215.0
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.++..+|..+...... .|.+++ ..|.+..++..++..+
T Consensus 45 ~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~-----~~~~~~-~~C~~~~~~~~~~~~~ 118 (364)
T 2ks9_A 45 TSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHN-----EWYYGL-FYCKFHNFFPIAAVFA 118 (364)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT-----SCSSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CccchH-HHHHhHHHHHHHHHHH
Confidence 6899999999998888888899999999999999999988888887765543 677775 4577888999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||+||++|++++ .+++++...++++|+++++.++|......... .++. ..|..++.. .
T Consensus 119 s~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~----~~~~--~~C~~~~~~---~ 187 (364)
T 2ks9_A 119 SIYSMTAVAFDRYMAIIHPLQPR--LSATATKVVICVIWVLALLLAFPQGYYSTTET----MPSR--VVCMIEWPE---H 187 (364)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTS--CCHHHHHHHHHHHHHHHHHHHTTTTTTSCCCB----CTTC--SSBCCCCSC---C
T ss_pred HHHHHHHHHHHHHHHHhhhcccc--cccchHHHHHHHHHHHHHHHHhHHHHHhhhee----cCCC--CEEeecCCC---c
Confidence 99999999999999999999986 58888999999999999999998765332211 1121 223322211 1
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHH
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLIT 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 241 (323)
........+.....++.+++|++++.++|..+.+.+++++++.+. ..+.+++.++++|+++++.+++++|++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~-------~~~~~~~~~~~~k~~~~~~~v~~~f~~~ 260 (364)
T 2ks9_A 188 PNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDS-------SDRYHEQVSAKRKVVKMMIVVVCTFAIC 260 (364)
T ss_dssp CTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSS-------SSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------chhhhhhHHhhhhHHHHHHHHHHHHHHH
Confidence 112223345555667778999999999999999988764332111 1112344567789999999999999999
Q ss_pred hhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 242 EFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 242 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
|+|+.+..++..+.++............+..++.++|+++||+||++++++||++++++++|++
T Consensus 261 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~ 324 (364)
T 2ks9_A 261 WLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCP 324 (364)
T ss_dssp HHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Confidence 9999998888766443322233344566778899999999999999999999999999998755
No 7
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=100.00 E-value=1.5e-43 Score=301.13 Aligned_cols=277 Identities=18% Similarity=0.223 Sum_probs=216.5
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.++..+|..+...... .|.++. ..|.+..++..++..+
T Consensus 51 ~gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~~-----~~~~~~-~~C~~~~~~~~~~~~~ 124 (349)
T 1u19_A 51 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG-----YFVFGP-TGCNLEGFFATLGGEI 124 (349)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT-----SCTTHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhcC-----eeeCCh-hHHHHHHHHHHHHHHH
Confidence 6899999999999888888899999999999999999998888887765543 677775 4577888999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||+||++|+++++ .+++++...++++|+++++.++|+.++++.... +... +.|..++.. .
T Consensus 125 s~~~l~~isidRy~aI~~P~~~~~-~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~---~~~~--~~C~~~~~~---~ 195 (349)
T 1u19_A 125 ALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPLVGWSRYIP---EGMQ--CSCGIDYYT---P 195 (349)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEE---ETTT--TEEECCCSC---C
T ss_pred HHHHHHHHHHHHHheeeCCcccee-eccchhHHHHHHHHHHHHHHHHHHHHheeeeec---cCCc--eeecccccC---c
Confidence 999999999999999999999986 688999999999999999999998876543221 2222 234433221 1
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHH
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLIT 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 241 (323)
........+.....++.+++|+++++++|.++.+++++++++.++ +++..++++|.++++.++++.|++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~f~i~ 265 (349)
T 1u19_A 196 HEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE----------SATTQKAEKEVTRMVIIMVIAFLIC 265 (349)
T ss_dssp CGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCS----------SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----------chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 112223444455566778999999999999999988776542211 2334566788999999999999999
Q ss_pred hhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcc
Q psy6052 242 EFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNV 306 (323)
Q Consensus 242 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~ 306 (323)
|+|+.+..++....++. ........+..++.++|+++||+||++++++||++++++++|++.
T Consensus 266 ~~P~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~~ 327 (349)
T 1u19_A 266 WLPYAGVAFYIFTHQGS---DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN 327 (349)
T ss_dssp HHHHHHHHHHHHHTTTS---CCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHhHhheecCCc---ccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccCC
Confidence 99999988776654332 223345567788999999999999999999999999999987653
No 8
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=100.00 E-value=1.8e-44 Score=321.53 Aligned_cols=287 Identities=15% Similarity=0.188 Sum_probs=222.8
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|+|++|||++|++.++ .+|+.+..... .|.++... |.+..++..++..+
T Consensus 61 ~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~-~~p~~~~~~~~------~~~~~~~~-C~~~~~~~~~~~~~ 132 (502)
T 3odu_A 61 TGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAVA------NWYFGNFL-CKAVHVIYTVNLYS 132 (502)
T ss_dssp HHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHT------CCCSHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc------CCcCCchh-hhhHHHHHHHHHHH
Confidence 689999999999999888889999999999999999965 78988776654 78888655 77888999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||+||++|++|++..+++++..+++++|++++++++|+++...... ..+. ..|... .
T Consensus 133 s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~----~~~~--~~C~~~------~ 200 (502)
T 3odu_A 133 SVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSE----ADDR--YICDRF------Y 200 (502)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEE----CSSS--EEEEEC------C
T ss_pred HHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHHheeeec----cCCc--eEEeec------C
Confidence 999999999999999999999998889999999999999999999999887655432 1122 223322 1
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCC---------------------------
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTP--------------------------- 214 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~--------------------------- 214 (323)
........+.....++.+++|+++++++|..|++++++++++.+.........
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (502)
T 3odu_A 201 PNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLN 280 (502)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHHHHHHHTCCEEEEEECTTSCEEEETTEEEECSSCHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccccCCCccccccccccccCcCcccc
Confidence 22334445555566777899999999999999999998654432211110000
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 215 -------------------------------------------------------------------------------- 214 (323)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (323)
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (502)
T 3odu_A 281 AAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRM 360 (502)
T ss_dssp HHHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccchhhhcccCcchhhhhhccccccchhhcccccccccccCccccccccCCCCCCcchhhhhhhhhchhhcccCccccch
Confidence
Q ss_pred --------------------------------------CCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhc
Q psy6052 215 --------------------------------------CPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILG 256 (323)
Q Consensus 215 --------------------------------------~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~ 256 (323)
.+.+.+.++++|+++++++++++|++||+|+.+..++..+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~ 440 (502)
T 3odu_A 361 LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFIL 440 (502)
T ss_dssp HHHTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHCSSHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhhhhccccccccccccCcchhhhccccccccccchhhhhhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 000123345789999999999999999999999888876541
Q ss_pred c------ccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcccc
Q psy6052 257 R------CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLG 308 (323)
Q Consensus 257 ~------~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~ 308 (323)
. +........+..++.++.++|+++||+||+++|++||++++++++|+++++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~~~ 498 (502)
T 3odu_A 441 LEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLE 498 (502)
T ss_dssp TTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCCHHHHHSSCSSCG
T ss_pred HHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHHHHHHHhccCCchh
Confidence 1 111233444556788999999999999999999999999999998876443
No 9
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-43 Score=307.74 Aligned_cols=283 Identities=18% Similarity=0.205 Sum_probs=215.6
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.+++.+|..+...... .|.++.. .|.+..++..++..+
T Consensus 21 ~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~-----~~~~~~~-~C~~~~~~~~~~~~~ 94 (452)
T 3rze_A 21 VTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMS-----KWSLGRP-LCLFWLSMDYVASTA 94 (452)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSS-----SCSSHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CccCCch-hHhHHHHHHHHHHHH
Confidence 6899999999999888888899999999999999999988999998877653 7888754 577778999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||++|++|++|++..+++++..+++++|++++++++|.+........ ...... ..|..+ .
T Consensus 95 s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~-~~~~~~--~~C~~~------~ 165 (452)
T 3rze_A 95 SIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQ-TSVRRE--DKCETD------F 165 (452)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHHCCCC--------CCS--SSSCCS------C
T ss_pred HHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cccCCC--CeecCC------C
Confidence 9999999999999999999999999999999999999999999999885542221111 001111 111111 1
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCC-----------------------------
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSG----------------------------- 212 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----------------------------- 212 (323)
.....+.....++.+++|+++++++|..|++.+++++++.+.......
T Consensus 166 ---~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (452)
T 3rze_A 166 ---YDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNA 242 (452)
T ss_dssp ---TTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHCEEEEEEECTTSCEEEEETEECSSCSSHHH
T ss_pred ---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhhhhcccCCcccccccccccccCCCCCc
Confidence 112234445567778999999999999999999876544221110000
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 213 -------------------------------------------------------------------------------- 212 (323)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (323)
T Consensus 243 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (452)
T 3rze_A 243 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRML 322 (452)
T ss_dssp HHHHHHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHSCHHHHHHHHHHHHHHCHHHHTSCHHHHHHH
T ss_pred ccccccCCCCCCCCccccCCcccchhcCCCcccccCcccccccCCcccCCCccccccccccccccCCCCCCccccCcchh
Confidence
Q ss_pred ----------------------------------CCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhccc
Q psy6052 213 ----------------------------------TPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRC 258 (323)
Q Consensus 213 ----------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~ 258 (323)
+..+.....++|+|+++++++++++|++||+|+.+..++..+.+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~ 402 (452)
T 3rze_A 323 QQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC 402 (452)
T ss_dssp HTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hhcCCccccccccCCccCCCCCcccchhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc
Confidence 0000112344788999999999999999999999999887765442
Q ss_pred cccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcc
Q psy6052 259 FFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNV 306 (323)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~ 306 (323)
.......+..++.++|+++||+||+++|++||++++++++|++.
T Consensus 403 ----~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~~~ 446 (452)
T 3rze_A 403 ----CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSG 446 (452)
T ss_dssp ----SCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC---
T ss_pred ----ccHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhccc
Confidence 23455668889999999999999999999999999999988763
No 10
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=100.00 E-value=7.1e-45 Score=319.49 Aligned_cols=297 Identities=16% Similarity=0.130 Sum_probs=217.3
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.+++.+|..+.... .|..+. ..|.+..++..++..+
T Consensus 44 ~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~-------~~~~~~-~~C~~~~~~~~~~~~~ 115 (447)
T 4eiy_A 44 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST-------GFCAAC-HGCLFIACFVLVLTQS 115 (447)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-------TCEEEH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccccCc-cHHHHHHHHHHHHHHH
Confidence 68999999999998888888999999999999999999888998876433 555554 4677888999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||++|++|++|++..+++++..+++++|++++++++|+.+++........... ....|..++.. +..
T Consensus 116 S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~~~~-~~~~c~~~~~~-~~~ 193 (447)
T 4eiy_A 116 SIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKN-HSQGCGEGQVA-CLF 193 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCHHHH-HHTTCCTTEEE-CCH
T ss_pred HHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCcccc-ccccccccchh-hcc
Confidence 9999999999999999999999988999999999999999999999998876653221100000 00001110000 000
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccC------------------------------
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKS------------------------------ 211 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~------------------------------ 211 (323)
........+.....++.+++|+++++++|.+|++.++++.++.+......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (447)
T 4eiy_A 194 EDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDA 273 (447)
T ss_dssp HHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCccccchhhhccchhhhccCCCC
Confidence 11111222333334566799999999999999999998766543210000
Q ss_pred ---CC------------------------------------------------------------CCCCcccccccccee
Q psy6052 212 ---GT------------------------------------------------------------PCPQSKVEKRMDRTA 228 (323)
Q Consensus 212 ---~~------------------------------------------------------------~~~~~~~~~~~~~~~ 228 (323)
.. ..+.++..++++|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 353 (447)
T 4eiy_A 274 QKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAA 353 (447)
T ss_dssp HC---------------CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCCCCcccccccCCCCCCCCccchhhhhcccCCcCcccchhhhhcccccchhhccccchhHHHHHHHHHH
Confidence 00 000112235678999
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcccc
Q psy6052 229 HMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLG 308 (323)
Q Consensus 229 ~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~ 308 (323)
+++++++++|++||+|+.+..++..+.++. ......+..+..++.++|+++||+||++++++||+++++++++++++.
T Consensus 354 k~l~~vv~~F~icw~P~~i~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~~~r~ 431 (447)
T 4eiy_A 354 KSLAIIVGLFALCWLPLHIINCFTFFCPDC--SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ 431 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTS--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTC---
T ss_pred HHHHHhhhhhheeccHHHHHHHHHHhcCcc--cccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998887765432 233445677889999999999999999999999999999998776544
Q ss_pred ee
Q psy6052 309 KI 310 (323)
Q Consensus 309 ~~ 310 (323)
+.
T Consensus 432 ~~ 433 (447)
T 4eiy_A 432 QE 433 (447)
T ss_dssp --
T ss_pred CC
Confidence 43
No 11
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=100.00 E-value=1.7e-42 Score=309.39 Aligned_cols=279 Identities=14% Similarity=0.126 Sum_probs=203.8
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.+++++++++|+|++|||++|++.++...|..+..... .|.++.. .|.+..++..++..+
T Consensus 76 ~g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~~~~------~~~~~~~-~c~~~~~~~~~~~~~ 148 (520)
T 3v2y_A 76 FIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGAT------TYKLTPA-QWFLREGSMFVALSA 148 (520)
T ss_dssp HHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG------GTTSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHcccc------ceeeCcc-ccchHHHHHHHHHHH
Confidence 689999999999999888889999999999999999999888877665221 6777754 466777888999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||+||+ |++|+..++++++..+++++|++++++++|++++++.. .+. ..|..++ +
T Consensus 149 S~~~l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~------~~~--~~C~~~~----~- 214 (520)
T 3v2y_A 149 SVFSLLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCI------SAL--SSCSTVL----P- 214 (520)
T ss_dssp HHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCT------TCG--GGBCSSS----T-
T ss_pred HHHHHHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHeeccc------cCC--CcccccC----C-
Confidence 99999999999999999 99999999999999999999999999999988866533 111 1122111 1
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCC-----------------------------
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSG----------------------------- 212 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----------------------------- 212 (323)
... ..+....++.+++|+++++++|.+|++.+++++......+....
T Consensus 215 ~~~----~~~~~~~~~~~~lPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~t~~~g~~~~~~~~~~~~ 290 (520)
T 3v2y_A 215 LYH----KHYILFCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAA 290 (520)
T ss_dssp TBB----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCEECSSSSEEETTTEECCSSSCHHHH
T ss_pred ccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhccccccceeEecccccccccccccc
Confidence 111 12223345568999999999999999999987611000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 213 -------------------------------------------------------------------------------- 212 (323)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (323)
T Consensus 291 ~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 370 (520)
T 3v2y_A 291 KSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQ 370 (520)
T ss_dssp HHHHHHHHTSCCTTCCCHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHSCHHHHHHHHHHHHHSCHHHHHTCHHHHHHHH
T ss_pred cchhhhHHHHhcCCcccHHHhhhHHHhccccccccccccccCCCcCCccchhhhHHHHHHHHccCCCccccccccccccc
Confidence
Q ss_pred ----------------------------------CCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhccc
Q psy6052 213 ----------------------------------TPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRC 258 (323)
Q Consensus 213 ----------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~ 258 (323)
++.....+.++++|+++++++++++|++||+|+.+..++..+.+..
T Consensus 371 ~~~~~~~~~~~~~s~~~~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~ 450 (520)
T 3v2y_A 371 QKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVK 450 (520)
T ss_dssp TTCHHHHHHHHHHSHHHHHSHHHHHHHHHHHHHCSGGGTCSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred ccchhhHhhhhhccchhhhcccchhhHHHHhhcchhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 0000011223578899999999999999999999999887764431
Q ss_pred cccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCccc
Q psy6052 259 FFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVL 307 (323)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~ 307 (323)
. ........+..+++++||++||+||+++|++||++++++++|+...
T Consensus 451 ~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~ 497 (520)
T 3v2y_A 451 T--CDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEV 497 (520)
T ss_dssp T--CSTTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCSCC--
T ss_pred c--ccHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhccc
Confidence 1 1233344567889999999999999999999999999999877543
No 12
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=100.00 E-value=1.9e-44 Score=302.35 Aligned_cols=280 Identities=16% Similarity=0.171 Sum_probs=211.0
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.++..+|..+...... .|.+++ ..|.+..++...+..+
T Consensus 24 ~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~~~-----~~~~~~-~~C~~~~~~~~~~~~~ 97 (315)
T 4amj_A 24 LIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG-----TWLWGS-FLCELWTSLDVLCVTA 97 (315)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHS-----SCCSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHhcC-----Ceeccc-cHHHHHHHHHHHHHHH
Confidence 6899999999999888888899999999999999999988899887766543 787775 4577778999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|.+++++||+|||++|++|++|++..+++++...++++|+++++.+.|+.+....... +++ ...|..++ ..
T Consensus 98 S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~---~~~--~~~c~~~~----~~ 168 (315)
T 4amj_A 98 SIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDE---DPQ--ALKCYQDP----GC 168 (315)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC---SHH--HHHHHHCT----TC
T ss_pred HHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhcccc---CCC--cccccccc----cc
Confidence 9999999999999999999999988899999999999999999999877653321111 000 01111110 11
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHH
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLIT 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 241 (323)
........+.....++.+++|+++++++|.++.+.++++.++.++....+. +++..++++|.++++..++++|++|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~k~~~~~~~~~~~f~i~ 244 (315)
T 4amj_A 169 CDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKT----SRVMLMREHKALKTLGIIMGVFTLC 244 (315)
T ss_dssp CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC----------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc----chhhhhhhhhHHHHHHHHHHHHHHH
Confidence 111223344455567778999999999999999999987766543332211 2333457889999999999999999
Q ss_pred hhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 242 EFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 242 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
|+|+.+..++..+.++ ........+..++.++|+++||++|+ ++++||++++++++|++
T Consensus 245 ~~P~~i~~~~~~~~~~----~~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~ 303 (315)
T 4amj_A 245 WLPFFLVNIVNVFNRD----LVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPR 303 (315)
T ss_dssp HHHHHHHHHHHHHCTT----SSCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCc----cchHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCC
Confidence 9999999888765432 22344566778899999999999999 99999999999998765
No 13
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=100.00 E-value=3.4e-43 Score=292.23 Aligned_cols=266 Identities=15% Similarity=0.191 Sum_probs=203.7
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++|++|+++|++++|||++|++.++ .+|........ +|.+|+.. |....++...+..+
T Consensus 24 ~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l-~~p~~~~~~~~------~~~~~~~~-c~~~~~~~~~~~~~ 95 (296)
T 2lnl_A 24 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFAL-TLPIWAASKVN------GWIFGTFL-CKVVSLLKEVNFYS 95 (296)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHS------SSCCSSHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHH-hhhHHHhhccC------CCccchhH-HHHHhhhhhhhHHH
Confidence 689999999999999888899999999999999999987 57777665443 78888665 45666888999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||+||++|++++.. .+++...+++++|+.+++.+.|+....+.... +.+. ...+... ..
T Consensus 96 s~~~l~~isidRy~aI~~P~~~~~~-~~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~---~~~~-~~~~~~~-----~~ 165 (296)
T 2lnl_A 96 GILLLACISVDRYLAIVHATRTLTQ-KRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHP---NNSS-PVCYEVL-----GN 165 (296)
T ss_dssp HHHHHHHHHHHHHHHSSSCSSSSCC-HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCC---CTTS-CCCCSCC-----SC
T ss_pred HHHHHHHHHhhhhhhhhhccccchh-hhhhhHheehHHHHHHHHHhcchhhcceeecC---CCCC-ceeeeec-----cc
Confidence 9999999999999999999999864 34567778888999999999998775553322 1111 1111111 22
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHH
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLIT 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 241 (323)
........+......+.+++|+.++..+|.++.+++++ ...++++|.+|++..++++|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~-------------------~~~~~~~k~~~~~~~v~~~f~ic 226 (296)
T 2lnl_A 166 DTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK-------------------AHMGQKHRAMRVIFAVVLIFLLC 226 (296)
T ss_dssp CTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSS-------------------CCCHHHHTHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HhhhhhhhHHHHHHHhhhheeee
Confidence 22233344445556677899999999999887665433 22455678999999999999999
Q ss_pred hhhHHHHHHHHhhhcccccc------ccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCC
Q psy6052 242 EFPQGILALLSGILGRCFFE------SCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPK 304 (323)
Q Consensus 242 ~~P~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~ 304 (323)
|+|+.+..++..+.+..... ........++.+++++||++||+||+++|++||++++|+++|+
T Consensus 227 w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~cr 295 (296)
T 2lnl_A 227 WLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMH 295 (296)
T ss_dssp HHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHHC
T ss_pred ehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 99999999887765432211 1223445678889999999999999999999999999999864
No 14
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=100.00 E-value=2.2e-43 Score=311.38 Aligned_cols=286 Identities=18% Similarity=0.239 Sum_probs=218.6
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.++. +|+.+...... .|.++. ..|.+..++..++..+
T Consensus 30 ~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~~-----~~~~~~-~~C~~~~~~~~~~~~~ 102 (464)
T 4dkl_A 30 VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMG-----TWPFGN-ILCKIVISIDYYNMFT 102 (464)
T ss_dssp HHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHS-----SCCSCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-----Cccccc-chhhhHHHHHHHHHHH
Confidence 6899999999999888888899999999999999999986 88887776654 787775 4577778999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||++|++|++|++..+++++..+++++|++++++++|+++...... ..+. ..|..+ +..
T Consensus 103 s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~~~----~~~~--~~c~~~----~~~ 172 (464)
T 4dkl_A 103 SIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATTKY----RQGS--IDCTLT----FSH 172 (464)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCCEE----ETTE--EECCBC----CSS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheeecc----cCCC--ceEEee----cCC
Confidence 999999999999999999999998889999999999999999999999876444322 1221 122222 122
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCC-----------------------------
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSG----------------------------- 212 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~----------------------------- 212 (323)
........+.....++.+++|+++++++|..|++++++++++.+..+....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (464)
T 4dkl_A 173 PTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNA 252 (464)
T ss_dssp SHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHCCEEEEEECTTSCEEEETTEEEESSSCSHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccccccccCCCCCccccccccccCCCcccc
Confidence 222234445556667778999999999999999999876653322210000
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 213 -------------------------------------------------------------------------------- 212 (323)
Q Consensus 213 -------------------------------------------------------------------------------- 212 (323)
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (464)
T 4dkl_A 253 AKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRML 332 (464)
T ss_dssp HHHHHHHHHSSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHTSCHHHHHHHHHHHHHHCHHHHHTCHHHHHHH
T ss_pred ccccccccccccccceecCCccccccccCCcccccccccCCCCCccccCcccccchhhhhccccCCCCCcccccccccch
Confidence
Q ss_pred ----------------------------------CCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHhhhccc
Q psy6052 213 ----------------------------------TPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRC 258 (323)
Q Consensus 213 ----------------------------------~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~ 258 (323)
......++.++|+|+++++++++++|++||+|+.+..++..+....
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~ 412 (464)
T 4dkl_A 333 QQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIP 412 (464)
T ss_dssp HTTCHHHHHHHHTTSHHHHHSHHHHHHHHHHHHHSSSTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred hhcccchhhcccccccccccCccccceeeecccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 0001223445678999999999999999999999999887764321
Q ss_pred cccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 259 FFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
..........++.++.++|+++||+||+++|++||++++++++++.
T Consensus 413 -~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc~~~~ 458 (464)
T 4dkl_A 413 -ETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTS 458 (464)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC---
T ss_pred -ccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHhcccc
Confidence 2233444556788899999999999999999999999999865543
No 15
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=100.00 E-value=7.8e-43 Score=309.29 Aligned_cols=276 Identities=17% Similarity=0.217 Sum_probs=214.4
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.+++.+|..+......+ .|.++. ..|.+..++..++..+
T Consensus 51 ~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~----~~~~~~-~~C~~~~~~~~~~~~~ 125 (481)
T 3pbl_A 51 AIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGG----VWNFSR-ICCDVFVTLDVMMCTA 125 (481)
T ss_dssp HHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTS----CCCSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccccCc-chhhhHHHHHHHHHHH
Confidence 68999999999998888888999999999999999999889998887665432 677774 5677878999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCC---CcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKC---SASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPL 158 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~---~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (323)
|++++++||+|||++|++|++| .+..+++++..+++++|++++++++|+++.++... +. ..|..+
T Consensus 126 s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~------~~--~~C~~~---- 193 (481)
T 3pbl_A 126 SIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTG------DP--TVCSIS---- 193 (481)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS------ST--TCCSCC----
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHheecccC------CC--Cccccc----
Confidence 9999999999999999999998 56678899999999999999999999887554311 11 111111
Q ss_pred cccCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhcccc-----C----------------------
Q psy6052 159 AKENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSK-----S---------------------- 211 (323)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~-----~---------------------- 211 (323)
...+.....++.+++|+++++++|..|++.+++++++....... .
T Consensus 194 --------~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (481)
T 3pbl_A 194 --------NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKS 265 (481)
T ss_dssp --------CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCSSCEECSSSCEEETTTEEEESS
T ss_pred --------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhccccccCcccceeecccccccCC
Confidence 12234455677789999999999999999999765432100000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy6052 212 -------------------------------------------------------------------------------- 211 (323)
Q Consensus 212 -------------------------------------------------------------------------------- 211 (323)
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (481)
T 3pbl_A 266 PSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTN 345 (481)
T ss_dssp SCHHHHHHHHHHHHTSCCTTCCCHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccCCCcccchhccCCCceeccCCchhcccCCcccccccccccCccCccccccccccchhccccccccCCCCCCCccc
Confidence
Q ss_pred --------------------------------------CCCCCCccccccccceehhhHHHHHHHHHHhhhHHHHHHHHh
Q psy6052 212 --------------------------------------GTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSG 253 (323)
Q Consensus 212 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~ 253 (323)
.+..+.....++++|+++++++++++|++||+|+.+..++..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~ 425 (481)
T 3pbl_A 346 SLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNT 425 (481)
T ss_dssp HHHHHHTTCHHHHHHHHHTSHHHHHSHHHHHHHHHHHHHSSSTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhccccccccchhhhccccccCCcccccccceeecccccccccccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 000001112235889999999999999999999999998877
Q ss_pred hhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 254 ILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
+.+. ......+..+..++.++|+++||+||++++++||++++++++|++
T Consensus 426 ~~~~---~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~ 474 (481)
T 3pbl_A 426 HCQT---CHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGR 474 (481)
T ss_dssp SCSS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC--
T ss_pred cccc---ccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhccC
Confidence 6443 233455667888999999999999999999999999999998766
No 16
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=100.00 E-value=3.1e-42 Score=302.68 Aligned_cols=282 Identities=16% Similarity=0.174 Sum_probs=218.8
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhh-HHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEY-VPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHT 80 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 80 (323)
+|++||+++++++.++++++++.|++++|||++|++.+++. +|..+...... .|.++. ..|.+..++..++..
T Consensus 47 ~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~-----~~~~~~-~~C~~~~~~~~~~~~ 120 (448)
T 2z73_A 47 IGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK-----KWIFGF-AACKVYGFIGGIFGF 120 (448)
T ss_dssp HHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTT-----SCCSHH-HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHhcC-----CccCCH-HHHHHHHHHHHHHHH
Confidence 68999999999998888888999999999999999998864 78777665543 677774 567788889999999
Q ss_pred HHHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeeccccc
Q psy6052 81 ISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAK 160 (323)
Q Consensus 81 ~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (323)
+|++++++||+|||++|++|+++++..+++++..+++++|+++++++++.++.++.... +.. .+.|..++.
T Consensus 121 ~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~---~~~--~~~c~~~~~---- 191 (448)
T 2z73_A 121 MSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTL---EGV--LCNCSFDYI---- 191 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEE---CTT--SSSEEECCS----
T ss_pred HHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeee---cCC--ceeEecccc----
Confidence 99999999999999999999999988999999999999999999999988876543322 222 233444321
Q ss_pred cCcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCC--CccccccccceehhhHHHHHHH
Q psy6052 161 ENNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCP--QSKVEKRMDRTAHMLVAVLLLF 238 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~f 238 (323)
........+.....++.+++|+++++++|..|++++++++++.+........... .++..++++|+++++++++++|
T Consensus 192 -~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~iv~~F 270 (448)
T 2z73_A 192 -SRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQF 270 (448)
T ss_dssp -CCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccHHHHHHHHHHHHHHHH
Confidence 1122233444455566789999999999999999999988776654332221110 1122345789999999999999
Q ss_pred HHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcC
Q psy6052 239 LITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFK 302 (323)
Q Consensus 239 ~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~ 302 (323)
++||+|+.+..++..+... .........+..++..+|+++||+||+++|++||++++++++
T Consensus 271 ~i~~~P~~i~~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~ 331 (448)
T 2z73_A 271 LLSWSPYAVVALLAQFGPL---EWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331 (448)
T ss_dssp HHHHHHHHHHHHHHHHSCG---GGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCG
T ss_pred HHHhHHHHHHHHHHHhCCc---ccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHH
Confidence 9999999998888765322 112334556778899999999999999999999999999884
No 17
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.8e-42 Score=300.79 Aligned_cols=277 Identities=17% Similarity=0.206 Sum_probs=204.0
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.++ .+|..+...... .|.++. ..|.+..++..++..+
T Consensus 138 ~gi~gN~lvi~~i~~~~~l~~~~~~ll~~LAvsDll~~~-~~p~~~~~~~~~-----~~~~~~-~~C~~~~~~~~~~~~~ 210 (434)
T 4ea3_A 138 GGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLL-TLPFQGTDILLG-----FWPFGN-ALCKTVIAIDYYNMFT 210 (434)
T ss_dssp HHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHT-THHHHHHHHHHT-----SCTTHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHeeeeeeecCccCchhHHHHHHHHHHHHHHHH-HhHHHHHHHHhc-----CCcCcc-cHHHHHHHHHHHHHHH
Confidence 689999999999999888899999999999999999854 788887776654 677775 4577778999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||++|++|++|++..+++++..+++++|++++++++|..+...... +.+. ..|..++ ..
T Consensus 211 S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~----~~~~--~~c~~~~----~~ 280 (434)
T 4ea3_A 211 STFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQV----EDEE--IECLVEI----PT 280 (434)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHEEECC----CSSC--CCEEECC----CS
T ss_pred HHHHHHHHHHHHHhEEEcccccccccchhhhHHhhhhhhhHHHHHHhhHheeeeeEe----ecCc--eeEEEec----CC
Confidence 999999999999999999999999999999999999999999999998776443221 1121 2233331 12
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCCCCCCCccccccccceehhhHHHHHHHHHH
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLIT 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~ 241 (323)
........+.....++.+++|+++++++|..|++++++++++.. ++++.++++|.++++++++++|++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~vv~~F~i~ 349 (434)
T 4ea3_A 281 PQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSG-----------SREKDRNLRRITRLVLVVVAVFVGC 349 (434)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCSSCSS-----------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----------chhhHHHHhHHHHHHHHHHHHHHHH
Confidence 22233344555666777899999999999999998876543211 2334566789999999999999999
Q ss_pred hhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCccc
Q psy6052 242 EFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVL 307 (323)
Q Consensus 242 ~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~ 307 (323)
|+|+.+..++..+... ...........++.++.++|+++||+||++++++||+++++++++++.+
T Consensus 350 w~P~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~~~~~fR~~~~~~~~~~~~~ 414 (434)
T 4ea3_A 350 WTPVQVFVLAQGLGVQ-PSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALG 414 (434)
T ss_dssp HHHHHHHHHHHHTTCC-CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC---------
T ss_pred HHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC
Confidence 9999998887655322 1122233445567778999999999999999999999999998776533
No 18
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=100.00 E-value=3.3e-42 Score=307.43 Aligned_cols=285 Identities=17% Similarity=0.183 Sum_probs=213.0
Q ss_pred cccccceeeEEEeecCCcCcCchHHHHHHHHHHhHHHHhhhHHHHHHHhHhhhhcccccCchhHHHHHHHHHHHHHHHHH
Q psy6052 2 NGTQTNLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTI 81 (323)
Q Consensus 2 ig~~gN~~vi~v~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 81 (323)
+|++||+++++++.++++++++.|++++|||++|++.+++.+|..+...... .|.++. ..|.+..++..++..+
T Consensus 195 ~gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~~-----~~~~~~-~~C~~~~~l~~~~~~~ 268 (514)
T 3sn6_R 195 AIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTK-----TWTFGN-FWCEFWTSIDVLCVTA 268 (514)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHT-----SCCSCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcC-----CeeCCc-chhhhHHHHHHHHHHH
Confidence 6899999999988888888899999999999999999998899988777653 788875 4577778999999999
Q ss_pred HHHHHHHHhhheeeEEeCCCCCCcccCCCchhhhhHHHHHHHHHhhcccceeeeeeeeeeecCCCceeeEEeeecccccc
Q psy6052 82 SIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKE 161 (323)
Q Consensus 82 s~~~l~~iaidRy~ai~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
|++++++||+|||++|++|++|++..+++++..+++++|++++++++++.+....... ..+.. .|... . ..
T Consensus 269 S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~---~~~~~--~c~~~--~--~~ 339 (514)
T 3sn6_R 269 SIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRAT---HQEAI--NCYAE--E--TC 339 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC------CHHH--HHHHS--S--SC
T ss_pred HHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecc---cCccc--ceeec--c--cc
Confidence 9999999999999999999999988899999999999999999988665532211110 00000 01000 0 00
Q ss_pred CcchhhhHHHhHHHhhHhhhhHHHHHHHHHHHHHHHHHhhHHHhhccccCC---------------CCCCCccccccccc
Q psy6052 162 NNGLIFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSG---------------TPCPQSKVEKRMDR 226 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 226 (323)
........+.....++.+++|+++++++|.+|++.++++.++.+....... ...+.++..++++|
T Consensus 340 ~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 419 (514)
T 3sn6_R 340 CDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHK 419 (514)
T ss_dssp CCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 111123344555667778999999999999999999988776654332210 00112223346789
Q ss_pred eehhhHHHHHHHHHHhhhHHHHHHHHhhhccccccccccchhhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcc
Q psy6052 227 TAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNV 306 (323)
Q Consensus 227 ~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~ 306 (323)
.++++++++++|++||+|+.+..++..+.+. ........+..++.++|+++||+||+ ++++||++++++++|++.
T Consensus 420 ~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~----~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~~ 494 (514)
T 3sn6_R 420 ALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN----LIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRS 494 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT----SSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----ccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCcc
Confidence 9999999999999999999999888765332 22344566788899999999999999 999999999999987653
No 19
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=98.92 E-value=6e-10 Score=61.50 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=33.1
Q ss_pred hhHHHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCC
Q psy6052 268 GEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPK 304 (323)
Q Consensus 268 ~~~~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~ 304 (323)
..++.+++++||++||+||++.+++||++++++++++
T Consensus 3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~~ 39 (40)
T 2koe_A 3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSA 39 (40)
T ss_dssp HHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhhc
Confidence 4567889999999999999999999999999988654
No 20
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=98.57 E-value=2.3e-09 Score=55.81 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhheeeEEeCCCCCCcccCCCc
Q psy6052 81 ISIFQTLTLAICRHVAIRFPHKCSASCSESS 111 (323)
Q Consensus 81 ~s~~~l~~iaidRy~ai~~p~~~~~~~~~~~ 111 (323)
+|++++++||+|||++|++|++|...+++++
T Consensus 2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~~ 32 (32)
T 1hll_A 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPRR 32 (32)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHGGGSSCCCCC
T ss_pred cHHHHHHHHHHHHHHHhhhhhhcccccCCCC
Confidence 5889999999999999999999987766653
No 21
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=98.08 E-value=6.8e-07 Score=46.45 Aligned_cols=29 Identities=38% Similarity=0.265 Sum_probs=25.5
Q ss_pred ccceehhhHHHHHHHHHHhhhHHHHHHHH
Q psy6052 224 MDRTAHMLVAVLLLFLITEFPQGILALLS 252 (323)
Q Consensus 224 ~~~~~~~~~~i~~~f~i~~~P~~i~~~~~ 252 (323)
|+|.+|++.++++.|.+||+|+.+..++.
T Consensus 1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~ 29 (33)
T 2ki9_A 1 DVRLAKTLGLVLAVLLICWFPVLALMAHS 29 (33)
T ss_dssp CCSSSSHHHHHHHHHTTTSSHHHHHHTTT
T ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 46889999999999999999999877654
No 22
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=88.02 E-value=0.033 Score=33.13 Aligned_cols=20 Identities=25% Similarity=0.062 Sum_probs=16.7
Q ss_pred CcccccceeeEEEeecCCcC
Q psy6052 1 ENGTQTNLLNIVVLTHKELS 20 (323)
Q Consensus 1 ~ig~~gN~~vi~v~~~~~~~ 20 (323)
++|++||+++++++.++|..
T Consensus 40 vlGl~GN~lvl~v~~~~~~~ 59 (64)
T 2lot_A 40 LLGTTGNGLVLWTVFRKKGH 59 (64)
T ss_dssp TTTTTSSSSHHHHHHHHSSS
T ss_pred HHHHhhhhhheeeeeEeccc
Confidence 47999999999998876654
No 23
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=74.26 E-value=6.4 Score=20.28 Aligned_cols=26 Identities=12% Similarity=0.349 Sum_probs=14.4
Q ss_pred hhhHHHH-HHHHHHHHHHHHHhhHHHh
Q psy6052 180 LLPCLVL-SVISYYLIGALRQASKRKH 205 (323)
Q Consensus 180 ~lp~~~~-~~~~~~i~~~l~~~~~~~~ 205 (323)
++|++++ ++.|..+++--+|+.++.+
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444443 5667777766555555443
No 24
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=61.26 E-value=39 Score=28.47 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=20.1
Q ss_pred hhhhhhhhhhhcCHHHHHHHHHhcCCCccccee
Q psy6052 278 NGAINFILYCSMSRQFRVTFGQLFKPKNVLGKI 310 (323)
Q Consensus 278 ~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~~ 310 (323)
-..+||.+--+.---+.+++|+.+++..++++.
T Consensus 381 l~~~ns~lNPiIY~~~~~~fR~~~~~~~~~~~~ 413 (434)
T 4ea3_A 381 LGYVNSCLNPILYAFLDENFKACFRKFCCASAL 413 (434)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 356788887777777889999999876655443
No 25
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=50.87 E-value=8.8 Score=17.16 Aligned_cols=13 Identities=46% Similarity=0.904 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCC
Q psy6052 291 RQFRVTFGQLFKP 303 (323)
Q Consensus 291 ~~fR~~~~~~~~~ 303 (323)
++||+.++++|.+
T Consensus 4 krfrkkfkklfkk 16 (27)
T 2ket_A 4 KRFRKKFKKLFKK 16 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6788988888764
No 26
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=39.79 E-value=28 Score=27.45 Aligned_cols=38 Identities=13% Similarity=-0.012 Sum_probs=24.5
Q ss_pred HHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcccce
Q psy6052 271 MDILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGK 309 (323)
Q Consensus 271 ~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~ 309 (323)
.......-..+|+.+--+.-- +.+++|+.+++..++++
T Consensus 266 ~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~ 303 (315)
T 4amj_A 266 LFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPR 303 (315)
T ss_dssp HHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCC
Confidence 333444446678888778777 78899998887654443
No 27
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=30.80 E-value=1.9e+02 Score=24.88 Aligned_cols=38 Identities=18% Similarity=0.001 Sum_probs=23.6
Q ss_pred HHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCccccee
Q psy6052 272 DILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLGKI 310 (323)
Q Consensus 272 ~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~~~ 310 (323)
..+...-+.+|+.+--+.-- +.+++|+.+++..++++.
T Consensus 457 ~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~~ 494 (514)
T 3sn6_R 457 YILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRS 494 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCcc
Confidence 34444446677777777776 778899988876644443
No 28
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=26.35 E-value=1.2e+02 Score=24.38 Aligned_cols=36 Identities=8% Similarity=-0.107 Sum_probs=24.1
Q ss_pred HHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCcccc
Q psy6052 273 ILALLNGAINFILYCSMSRQFRVTFGQLFKPKNVLG 308 (323)
Q Consensus 273 ~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~~~~ 308 (323)
.....-..+|+.+--+.---+.+++|+.+++..++.
T Consensus 288 ~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 323 (364)
T 2ks9_A 288 LAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCC 323 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc
Confidence 333444567777777776777888999887755343
No 29
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=26.11 E-value=73 Score=16.18 Aligned_cols=20 Identities=15% Similarity=0.246 Sum_probs=14.8
Q ss_pred HHhhHhhhhHHHHHHHHHHH
Q psy6052 174 YSVCIKLLPCLVLSVISYYL 193 (323)
Q Consensus 174 ~~~~~~~lp~~~~~~~~~~i 193 (323)
...++.++|.+.+++.|++.
T Consensus 10 At~Lfi~iPt~FLlilYvqT 29 (36)
T 3arc_M 10 ATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhee
Confidence 34556688999998888763
No 30
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=21.99 E-value=24 Score=29.96 Aligned_cols=35 Identities=9% Similarity=-0.032 Sum_probs=23.3
Q ss_pred HHHHHHhhhhhhhhhhhhcCHHHHHHHHHhcCCCc
Q psy6052 271 MDILALLNGAINFILYCSMSRQFRVTFGQLFKPKN 305 (323)
Q Consensus 271 ~~~l~~~~~~~nP~iY~~~~~~fR~~~~~~~~~~~ 305 (323)
...+..+-..+|+.+--+.---+.+++|+.+++..
T Consensus 296 ~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~ 330 (448)
T 2z73_A 296 AAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTF 330 (448)
T ss_dssp HHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHH
Confidence 34444455667777766666677888888887655
Done!