RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6052
(323 letters)
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 91.9 bits (229), Expect = 3e-21
Identities = 73/317 (23%), Positives = 139/317 (43%), Gaps = 32/317 (10%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N+ ++++LT K + + IN I+ G+A+ D++ ML + I + + + L
Sbjct: 14 NIFHLIILTRKSMRTSSINIIMIGIAICDIITMLLTIYNFIPEFIISYENSECIPPDSYL 73
Query: 67 FILIHMHFSQLLHTI---SIFQTLTLAICRHVAIRFP-----HKCSASCSESSCYISVLV 118
+L+ L S + + +A+ R + ++ P K S I +++
Sbjct: 74 KVLLDWILESLQDISRRCSTWLGVFMALIRTLVVKNPMSNKIQKLSKP---KFGLIIIII 130
Query: 119 AYILPILICAPSYFVFSIREIQ-IWESGKLEALYQLH---------LSPLAKENNGLIFS 168
+IL + YF + I E IW+ A + + LS L +N+GL+
Sbjct: 131 VFILSLPFSIFYYFRYEIVEEGGIWKPPPNCAGFPPNYTEPRYVLVLSELFTDNDGLLLK 190
Query: 169 LHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTA 228
++ + + K++PC++L +++ LI LR+A K + L S S + DRT
Sbjct: 191 IYLLIDGIVSKIIPCILLPILTILLIIELRKAKKSRKNLSSSS----------NKSDRTT 240
Query: 229 HMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVM-DILALLNGAINFILYC 287
+++ + + F I EFP GI ++ Y V+ +L +N + ++
Sbjct: 241 KLVIFMTISFFIAEFPLGISYIIQFFFYDDPGIRLILTYLSVIFSLLLTINAISHCLICF 300
Query: 288 SMSRQFRVTFGQLFKPK 304
MS Q+R T +LF K
Sbjct: 301 LMSSQYRKTAKKLFGCK 317
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 54.2 bits (131), Expect = 1e-08
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 25/276 (9%)
Query: 11 IVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLFILI 70
+V+L K+L TP N L LAV DLL +L +P Y V G +
Sbjct: 1 LVILRTKKLR-TPTNIFLLNLAVADLLFLL-TLPPWALYYLVG-----GDWPFGDALCKL 53
Query: 71 HMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILICAPS 130
+ SI ++I R++AI P + + + +LV ++L +L+ P
Sbjct: 54 VGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPP 113
Query: 131 YFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVLSVIS 190
+R ++ + L + + ++ +LP L++ ++
Sbjct: 114 LLFSWLRTVE----------EGNVTTCLIDFPEESTKRSYTLLSTLLGFVLP-LLVILVC 162
Query: 191 YYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILAL 250
Y LI LR RK S +S ++R + A ML+ V+++F++ P I+ L
Sbjct: 163 YTLI--LRTL--RKRARSGASQARAKRSSSKER--KAAKMLLVVVVVFVLCWLPYHIVLL 216
Query: 251 LSGILGRCFFESCYQPYGEVMDILALLNGAINFILY 286
L + + + LA +N +N I+Y
Sbjct: 217 LDSLCPLSIWRLLPTAL-LITLWLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 34.0 bits (78), Expect = 0.099
Identities = 68/306 (22%), Positives = 121/306 (39%), Gaps = 69/306 (22%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFV----------HVRS 56
N++ I VLT ++ TP++ L LAV+DLL ++ PF IY Y + + S
Sbjct: 58 NIIVIYVLTKTKIK-TPMDIYLLNLAVSDLLFVMTL-PFQIYYYILFQWSFGEFACKIVS 115
Query: 57 KLYF--TYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYI 114
LY+ Y FI + +++ R++AI P K + + YI
Sbjct: 116 GLYYIGFYNSMNFITV------------------MSVDRYIAIVHPVKSNKINTVKYGYI 157
Query: 115 SVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMY 174
LV +I+ I+ P FV++ ++ E+ Y NN + F +
Sbjct: 158 VSLVIWIISIIETTPILFVYTTKKDH--ETLICCMFY----------NNKTMNWKLFINF 205
Query: 175 SVCI--KLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLV 232
+ I L+P L + + Y I LK K+ + +++
Sbjct: 206 EINIIGMLIP-LTILLYCYSKILI---------TLKG--------INKSKKNKKAIKLVL 247
Query: 233 AVLLLFLITEFPQGILALLSGILGRCFFESC-----YQPYGEVMDILALLNGAINFILYC 287
+++LF+I P + + + F C Q V +I++L + IN ++Y
Sbjct: 248 IIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYA 307
Query: 288 SMSRQF 293
+S F
Sbjct: 308 FVSEFF 313
>gnl|CDD|222694 pfam14340, DUF4395, Domain of unknown function (DUF4395). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 142 and
168 amino acids in length. There are two completely
conserved C residues that may be functionally important.
Length = 131
Score = 28.3 bits (64), Expect = 2.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 227 TAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYG 268
A + V +L+L L+T P + L R FF PYG
Sbjct: 9 NAGLTVVLLILALLTGQPWLLALLAVVFALRAFFGPRRSPYG 50
>gnl|CDD|234020 TIGR02801, tolR, TolR protein. The model describes the inner
membrane protein TolR, part of the TolR/TolQ complex
that transduces energy from the proton-motive force,
through TolA, to an outer membrane complex made up of
TolB and Pal (peptidoglycan-associated lipoprotein). The
complex is required to maintain outer membrane
integrity, and defects may cause a defect in the import
of some organic compounds in addition to the resulting
morphologic. While several gene pairs homologous to talR
and tolQ may be found in a single genome, but the scope
of this model is set to favor finding only bone fide
TolR, supported by operon structure as well as by score
[Transport and binding proteins, Other, Cellular
processes, Pathogenesis].
Length = 129
Score = 28.3 bits (64), Expect = 3.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 266 PYGEVMDILALLNGA 280
PYGEV+ ++ALL A
Sbjct: 105 PYGEVIKVMALLKQA 119
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 28.8 bits (64), Expect = 3.7
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 17/209 (8%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
N I++L K++ T + + LA++DL+ ++++ PF IY F + S
Sbjct: 116 NAAIIMILFCKKIK-TITDIYIFNLAISDLIFVIDF-PFIIYNEFDQWIFGDFMCKVISA 173
Query: 67 FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILI 126
I + L T+ ++I R+ AI +P + + I ++++IL ++I
Sbjct: 174 SYYIGFFSNMFLITL-------MSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLII 226
Query: 127 CAPSYFVFSIREIQIWESGKLEAL--YQLHLSPLAKENNGLIFSLHFWMYSVCI--KLLP 182
+P+YF+F I E + YQ L E N + F + + I +P
Sbjct: 227 TSPAYFIFEASNIIFSAQDSNETISNYQCTLI-EDNEKNNISFLGRILQFEINILGMFIP 285
Query: 183 CLVLSVISYYLIGALRQASKRKHQLKSKS 211
++ + +I L+Q K K K+KS
Sbjct: 286 IIIFAFCYIKIILKLKQLKKSK---KTKS 311
>gnl|CDD|234609 PRK00068, PRK00068, hypothetical protein; Validated.
Length = 970
Score = 29.2 bits (66), Expect = 4.0
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 166 IFSLHF--WMYSVCIKLLPCLVL-SVISYYLIGALR---QASKRKHQLKSKSGT 213
F L F + S + LL + ++I++Y++G +R + + RK + +
Sbjct: 160 AFKLPFYRSLLSYLLVLLILAFIITLIAHYILGGIRKGIRLAGRKGGISRFARK 213
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 28.7 bits (65), Expect = 4.1
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPIL 125
L I L+ IS L +++ R A+ FP K S + I + +I+ I+
Sbjct: 65 LNSHIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWIIAII 124
Query: 126 ICAPSYFVF 134
I YF
Sbjct: 125 ISTLFYFPL 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.141 0.429
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,122,843
Number of extensions: 1545239
Number of successful extensions: 1788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1776
Number of HSP's successfully gapped: 38
Length of query: 323
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 226
Effective length of database: 6,635,264
Effective search space: 1499569664
Effective search space used: 1499569664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.4 bits)