RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6052
(323 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 76.5 bits (188), Expect = 9e-16
Identities = 52/328 (15%), Positives = 105/328 (32%), Gaps = 34/328 (10%)
Query: 3 GTQTNLLNIVV-LTHKELSATPINRILTGLAVTDLLVMLEY-VPFSIYMYFVHVRSKLYF 60
G N + I + K L TP N + LA +D L P F+ +
Sbjct: 48 GCGGNGIVIYLFTKTKSLQ-TPANMFIINLAFSDFTFSLVNGFPLMTISCFLK-----KW 101
Query: 61 TYAGSLFILIHMHFSQLLHTISIFQTLT-LAICRHVAIRFPHKCSASCSESSCYISVLVA 119
+ G ++ + +SI T+ ++I R+ I P S S +I ++
Sbjct: 102 IF-GFAACKVYGFIGGIFGFMSIM-TMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFV 159
Query: 120 YILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIK 179
++ +L F + G L ++S +++ L +
Sbjct: 160 WLWSVLWAIGPIFGWG----AYTLEGVLCNCSFDYIS---RDSTTRSNIL---CMFILGF 209
Query: 180 LLPCLVLSVISYYLI-GALRQASKRKHQLKSKSGTPCPQSKVEKRMD--RTAHMLVAVLL 236
P L++ Y+ I ++ K + + + R A + + ++
Sbjct: 210 FGPILII-FFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVS 268
Query: 237 LFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALL---NGAINFILYCSMSRQF 293
FL++ P ++ALL+ F + + + N ++Y +F
Sbjct: 269 QFLLSWSPYAVVALLA------QFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKF 322
Query: 294 RVTFGQLFKPKNVLGKIVPPTNTDIQST 321
R Q F + D +
Sbjct: 323 REAISQTFPWVLTCCQFDDKETEDDKDA 350
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 71.6 bits (176), Expect = 2e-14
Identities = 66/305 (21%), Positives = 122/305 (40%), Gaps = 40/305 (13%)
Query: 3 GTQTNLLNI-VVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFT 61
G N L + V + HK+L TP+N IL LAV DL ++ ++Y YF
Sbjct: 52 GFPINFLTLYVTVQHKKLR-TPLNYILLNLAVADLFMVFGGFTTTLYTSLHG-----YFV 105
Query: 62 YAGSLFILIHMHFSQLLHTISIFQTLT-LAICRHVAIRFPHKCSASCSESSCYISVLVAY 120
+ G + F+ L I+++ +L LAI R+V + P + E+ + V +
Sbjct: 106 F-GPTGCNLEGFFATLGGEIALW-SLVVLAIERYVVVCKPMS-NFRFGENHAIMGVAFTW 162
Query: 121 ILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKL 180
++ + AP +S + G + + +P +E N F + V +
Sbjct: 163 VMALACAAPPLVGWS----RYIPEGMQCSCGIDYYTP-HEETNNESFVI---YMFVVHFI 214
Query: 181 LPCLVLSVISYYLIG-ALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFL 239
+P +V+ Y + +++A+ ++ + + K EK + M++ +++ FL
Sbjct: 215 IPLIVI-FFCYGQLVFTVKEAAAQQQESATT-------QKAEKEV---TRMVIIMVIAFL 263
Query: 240 ITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALL---NGAINFILYCSMSRQFRVT 296
I P +A F P M I A + N ++Y M++QFR
Sbjct: 264 ICWLPYAGVAFYIFTHQGSDF----GPI--FMTIPAFFAKTSAVYNPVIYIMMNKQFRNC 317
Query: 297 FGQLF 301
Sbjct: 318 MVTTL 322
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 65.7 bits (160), Expect = 4e-12
Identities = 54/313 (17%), Positives = 106/313 (33%), Gaps = 41/313 (13%)
Query: 7 NLLNIV-VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGS 65
N+L I + + L T N +T LA DL++ L VPF G+
Sbjct: 200 NVLVITAIAKFERL-QTVTNYFITSLACADLVMGLAVVPFGA------AHILTKTWTFGN 252
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPIL 125
+ L T SI +A+ R+ AI P K + +++ + +L+ +I+ L
Sbjct: 253 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 312
Query: 126 ICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIK-LLPCL 184
+ W + + + + + S + +P +
Sbjct: 313 TSFLPIQMH-------WYRATHQEAINCYAEE---TCCDFFTNQAYAIASSIVSFYVPLV 362
Query: 185 VLSVISYYLI--GALRQA------SKRKHQLKSKSGTPCPQSKVEKRMDRTAHM------ 230
++ + Y + A RQ R H ++ R +
Sbjct: 363 IMVFV-YSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKAL 421
Query: 231 --LVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCS 288
L ++ F + P I+ ++ I + Y +++ + +N N ++YC
Sbjct: 422 KTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVY----ILLNWIGYVNSGFNPLIYC- 476
Query: 289 MSRQFRVTFGQLF 301
S FR+ F +L
Sbjct: 477 RSPDFRIAFQELL 489
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 64.7 bits (158), Expect = 5e-12
Identities = 54/306 (17%), Positives = 110/306 (35%), Gaps = 47/306 (15%)
Query: 8 LLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSLF 67
++ ++L HK + T N L LA + + + + + Y G +
Sbjct: 52 VVMWIILAHKRM-RTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHN-----EWYY-GLFY 104
Query: 68 ILIHMHFSQLLHTISIFQTLT-LAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILI 126
H F SI+ ++T +A R++AI P + S + + + + V ++L +L+
Sbjct: 105 CKFHNFFPIAAVFASIY-SMTAVAFDRYMAIIHPLQPRLSAT--ATKVVICVIWVLALLL 161
Query: 127 CAPSYFVFSIREIQ----------IWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSV 176
P + + + + E +Y + + L +
Sbjct: 162 AFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHI-----------CVTVLIY----- 205
Query: 177 CIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLL 236
LP LV+ +Y ++G + + + + M++ V+
Sbjct: 206 ---FLPLLVIGY-AYTVVG------ITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVC 255
Query: 237 LFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVT 296
F I P I LL I + + Q + LA+ + N I+YC ++ +FR+
Sbjct: 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315
Query: 297 FGQLFK 302
F F+
Sbjct: 316 FKHAFR 321
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 63.6 bits (155), Expect = 1e-11
Identities = 58/299 (19%), Positives = 107/299 (35%), Gaps = 32/299 (10%)
Query: 7 NLLNIV-VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGS 65
N+L I + + + L T N +T LA DL+V L VPF + VR + GS
Sbjct: 29 NVLVIAAIGSTQRLQ-TLTNLFITSLACADLVVGLLVVPFGA---TLVVRGTWLW---GS 81
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPIL 125
+ L T SI +AI R++AI P + + + + + + + + L
Sbjct: 82 FLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISAL 141
Query: 126 ICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIK-LLPCL 184
+ + W +AL + + + + S I +P L
Sbjct: 142 VSFLPIM------MHWWRDEDPQALKCYQDPGCCD----FVTNRAYAIASSIISFYIPLL 191
Query: 185 VLSVISYYLI--GALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITE 242
++ + + A Q K K + R + L ++ +F +
Sbjct: 192 IMIFV-ALRVYREAKEQIRKIDRASK-----RKTSRVMLMREHKALKTLGIIMGVFTLCW 245
Query: 243 FPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLF 301
P ++ +++ + + + L N A+N I+YC S FR F +L
Sbjct: 246 LPFFLVNIVNVFNRDLVPDWLF----VAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLL 299
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 57.5 bits (139), Expect = 2e-09
Identities = 54/305 (17%), Positives = 102/305 (33%), Gaps = 43/305 (14%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVH------VRSKLYF 60
N L + V+ T N + LA+ D LV+L +PF + K
Sbjct: 143 NCLVMYVILRHTKMKTATNIYIFNLALADTLVLL-TLPFQGTDILLGFWPFGNALCKTV- 200
Query: 61 TYAGSLFILIHMHFSQLLHTISIFQTLT-LAICRHVAIRFPHKCSASCSESSCYISVLVA 119
+M S F TLT +++ R+VAI P + + S +
Sbjct: 201 ----IAIDYYNMF-------TSTF-TLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAI 248
Query: 120 YILPILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIK 179
+ L ++ P + + E ++E L ++ + +
Sbjct: 249 WALASVVGVP-VAIMGSAQ---VEDEEIECLVEIP------TPQDYWGPVFAICIFLFSF 298
Query: 180 LLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFL 239
++P LV+SV Y L+ +L+ + ++ + R +++ V+ +F+
Sbjct: 299 IVPVLVISV-CYSLMI---------RRLRG-VRLLSGSREKDRNLRRITRLVLVVVAVFV 347
Query: 240 ITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQ 299
P + L LG L +N +N ILY + F+ F +
Sbjct: 348 GCWTPVQVFVLAQ-GLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRK 406
Query: 300 LFKPK 304
Sbjct: 407 FCCAS 411
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 52.1 bits (124), Expect = 1e-07
Identities = 40/227 (17%), Positives = 78/227 (34%), Gaps = 23/227 (10%)
Query: 7 NLLNIV-VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGS 65
N+L V + L N + LA D+ V + +PF+I + +
Sbjct: 39 NVLVCWAVWLNSNLQ-NVTNYFVVSLAAADIAVGVLAIPFAIT-----ISTGFCA---AC 89
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPIL 125
L F +L SIF L +AI R++AIR P + + + + + + ++L
Sbjct: 90 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFA 149
Query: 126 ICAPSYF----VFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLL 181
I +E + G E + N + F+ + +
Sbjct: 150 IGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVL------V 203
Query: 182 PCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTA 228
P L++ + Y I A ++ + + + K+ K +
Sbjct: 204 PLLLMLGV-YLRI--FLAARRQLNIFEMLRIDEGLRLKIYKDTEGYY 247
Score = 47.4 bits (112), Expect = 4e-06
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 198 RQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGR 257
++ ++GT ++ A L ++ LF + P I+ +
Sbjct: 364 TPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTF---- 419
Query: 258 CFFESCYQPYGEVMDILALL---NGAINFILYCSMSRQFRVTFGQLFK 302
F C +M + +L N +N +Y R+FR TF ++ +
Sbjct: 420 -FCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 466
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 3e-07
Identities = 53/317 (16%), Positives = 96/317 (30%), Gaps = 112/317 (35%)
Query: 42 YVPF----SIYMYFVHVRSKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAI 97
F + YF +R LY TY + LI L L A
Sbjct: 157 VAIFGGQGNTDDYFEELR-DLYQTYHVLVGDLIKFSAETLSE---------LIRTTLDAE 206
Query: 98 R-FPHKC-------SASCSESSCYI-SVLVAYILPILIC---APSYFVF---------SI 136
+ F + S + Y+ S+ ++ P LI Y V +
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPIS--CP-LIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 137 REIQIWESGKLEALYQLHLSPLA----------KENNGLIFSLHFWMYSVCIKLLPCLVL 186
R +G + L ++ +A + ++ F++ C + P L
Sbjct: 264 RSYLKGATGHSQGL----VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 187 SVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQG 246
++ + S L++ G P P ML ++
Sbjct: 320 PP-------SILEDS-----LENNEGVPSP-------------ML-SI----------SN 343
Query: 247 I-LALLSGILGRCFFESCYQPYGEVMDILALLNGAINFI-------LY--CSMSR----- 291
+ + + + + + P G+ ++I +L+NGA N + LY R
Sbjct: 344 LTQEQVQDYVNKT---NSHLPAGKQVEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 292 ----QFRVTFGQLFKPK 304
Q R+ F + K K
Sbjct: 400 SGLDQSRIPFSER-KLK 415
Score = 28.9 bits (64), Expect = 3.3
Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 44/119 (36%)
Query: 216 PQSKVE----------KRMDRTAHMLVAVLLLFLITEFPQGIL------ALLSGILG--- 256
P + E ++ + +L +TEF L AL + +L
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 257 ----------RCFFESCY---QPYGEVMDILALLNGAI--NFILYCSMSRQFRVTF-GQ 299
+ + + +P+ + + AL N L F GQ
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSN-SALFRAVGEGNAQLV--------AIFGGQ 163
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 45.8 bits (108), Expect = 1e-05
Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 23/229 (10%)
Query: 7 NLLNIV-VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGS 65
N+L V + L N + LA D+ V + +PF+I + +
Sbjct: 49 NVLVCWAVWLNSNLQ-NVTNYFVVSLAAADIAVGVLAIPFAIT-----ISTGFCA---AC 99
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPIL 125
L F +L SIF L +AI R++AIR P + + + + + + ++L
Sbjct: 100 HGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFA 159
Query: 126 ICAPSYF----VFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLL 181
I +E + G E + N + F+ + +
Sbjct: 160 IGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVL------V 213
Query: 182 PCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHM 230
P L++ + Y I A ++ L+ T KV ++ D A +
Sbjct: 214 PLLLMLGV-YLRI--FLAARRQLADLEDNWETLNDNLKVIEKADNAAQV 259
Score = 39.7 bits (92), Expect = 0.001
Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 168 SLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDR- 226
+ + + I + ++ QA+ + + + + + +
Sbjct: 290 EMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKE 349
Query: 227 --TAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALL---NGAI 281
A L ++ LF + P I+ + F C +M + +L N +
Sbjct: 350 VHAAKSLAIIVGLFALCWLPLHIINCFTF-----FCPDCSHAPLWLMYLAIVLSHTNSVV 404
Query: 282 NFILYCSMSRQFRVTFGQLFK 302
N +Y R+FR TF ++ +
Sbjct: 405 NPFIYAYRIREFRQTFRKIIR 425
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 43.5 bits (102), Expect = 7e-05
Identities = 38/228 (16%), Positives = 81/228 (35%), Gaps = 26/228 (11%)
Query: 7 NLLNIV-VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGS 65
N+L I + + L T N +T LA DL++ L VPF + F G+
Sbjct: 58 NVLVITAIAKFERLQ-TVTNYFITSLACADLVMGLAVVPFGAA---HILMKMWTF---GN 110
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPIL 125
+ L T SI +A+ R+ AI P K + +++ + +L+ +I+ L
Sbjct: 111 FWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGL 170
Query: 126 ICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFW--MYSVCIK-LLP 182
+ W + + F + + S + +P
Sbjct: 171 TSFLPIQMH-------WYRATHQEAINCYAEE-----TCCDFFTNQAYAIASSIVSFYVP 218
Query: 183 CLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHM 230
+++ + Y + ++A ++ + + + K+ K + +
Sbjct: 219 LVIMVFV-YSRV--FQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTI 263
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 40.9 bits (95), Expect = 4e-04
Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 33/229 (14%)
Query: 7 NLLNIV-VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGS 65
N L + VL + L T N ++ LAV DLLV +P+ +Y+
Sbjct: 56 NGLVCMAVLKERALQ-TTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNF-----SR 109
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSC---YISVLVAYIL 122
+ + + ++ T SI+ ++I R+ A+ P +SSC + + ++L
Sbjct: 110 ICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVL 169
Query: 123 PILICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKL-L 181
+ P + I + F +YS + L
Sbjct: 170 AFAVSCPL---------------------LFGFNTTGDPTVCSISNPDFVIYSSVVSFYL 208
Query: 182 PCLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHM 230
P V V+ Y I + + +RK+ + + K+ K + +
Sbjct: 209 PFGVT-VLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTI 256
Score = 39.4 bits (91), Expect = 0.001
Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 10/109 (9%)
Query: 198 RQASKRKHQLKSKSGTPCPQSKVEKRMDRTA-HMLVAVLLLFLITEFPQGILALLSGILG 256
Q R ++ + T + ++ A M+ VL F++ P + +L+
Sbjct: 369 NQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNT--- 425
Query: 257 RCFFESCYQPYGEVMDI---LALLNGAINFILYCSMSRQFRVTFGQLFK 302
++C+ E+ L +N A+N ++Y + + +FR F ++
Sbjct: 426 --HCQTCHVS-PELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILS 471
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 40.6 bits (94), Expect = 4e-04
Identities = 16/124 (12%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
Query: 7 NLLNIV-VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGS 65
N+ ++ + K+ P+ + LA++DLL + Y + +
Sbjct: 81 NIFVLLTIWKTKKFH-RPMYYFIGNLALSDLLAGVAYTANLLLSGATTYK-------LTP 132
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPIL 125
+ + + S+F L +AI R++ + + S + ++ + +++ ++
Sbjct: 133 AQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGS-NNFRLFLLISACWVISLI 191
Query: 126 ICAP 129
+
Sbjct: 192 LGGL 195
Score = 38.7 bits (89), Expect = 0.002
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 198 RQASKRKHQLKSKSGTPCPQSKVE--KRMDRTAHMLVAVLLLFLITEFPQGILALLSGIL 255
Q R ++ + T + ++ VL +F+ P IL LL
Sbjct: 388 NQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGC 447
Query: 256 GRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLF 301
+ ++ ++ LA+LN N I+Y +++ R F ++
Sbjct: 448 KVKTCDILFRAEYFLV--LAVLNSGTNPIIYTLTNKEMRRAFIRIM 491
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 39.6 bits (92), Expect = 9e-04
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 221 EKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGRCFFESCYQPYGEVMDILALLNGA 280
++ + R M++ V+ +F++ P I ++ L + L N
Sbjct: 375 DRNLRRITRMVLVVVAVFIVCWTPIHIYVIIK-ALITIPETTFQTVSWHFCIALGYTNSC 433
Query: 281 INFILYCSMSRQFRVTFGQLFKPK 304
+N +LY + F+ F + P
Sbjct: 434 LNPVLYAFLDENFKRCFREFCIPT 457
Score = 29.2 bits (65), Expect = 2.1
Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 30/140 (21%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVH-----------VR 55
N L + V+ T N + LA+ D L +PF Y + V
Sbjct: 35 NFLVMYVIVRYTKMKTATNIYIFNLALADALATS-TLPFQSVNYLMGTWPFGNILCKIVI 93
Query: 56 SKLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYIS 115
S Y+ S+F L M ++ R++A+ P K + + I
Sbjct: 94 SIDYYNMFTSIFTLCTM-----------------SVDRYIAVCHPVKALDFRTPRNAKIV 136
Query: 116 VLVAYILPILICAPSYFVFS 135
+ +IL I P +
Sbjct: 137 NVCNWILSSAIGLP-VMFMA 155
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 38.5 bits (89), Expect = 0.002
Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 198 RQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGR 257
+ ++ K + + R + ++A+LL F+IT P ++ L++
Sbjct: 357 QTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP 416
Query: 258 CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFK 302
C + + + L +N IN Y + F+ TF L
Sbjct: 417 CIPNTVW----TIGYWLCYINSTINPACYALCNATFKKTFKHLLM 457
Score = 38.5 bits (89), Expect = 0.002
Identities = 33/221 (14%), Positives = 79/221 (35%), Gaps = 29/221 (13%)
Query: 7 NLLNIV-VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGS 65
N+L +V + ++ L T N L LA DL++ + + V G
Sbjct: 41 NILVMVSIKVNRHLQ-TVNNYFLFSLACADLIIGVFSMNLYTL---YTVIGYWPL---GP 93
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPIL 125
+ + + ++ S+ L ++ R+ + P + + + A++L +
Sbjct: 94 VVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFI 153
Query: 126 ICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFW--MYSVCIKL-LP 182
+ AP+ I W+ + + + + + F + + LP
Sbjct: 154 LWAPA--------ILFWQ-------FIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLP 198
Query: 183 CLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKR 223
++++V+ Y+ I R + R + + + K+ K
Sbjct: 199 VIIMTVL-YWHI--SRASKSRINIFEMLRIDEGLRLKIYKD 236
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 36.6 bits (84), Expect = 0.008
Identities = 44/227 (19%), Positives = 81/227 (35%), Gaps = 29/227 (12%)
Query: 7 NLLNIV-VLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGS 65
NLL + V + ++L T N + L+V DL+V +P +I + SK G
Sbjct: 26 NLLVLYAVRSERKLH-TVGNLYIVSLSVADLIVGAVVMPMNIL---YLLMSKWSL---GR 78
Query: 66 LFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPIL 125
L + + T SIF L I R+ +++ P + +++ ++L A+ L L
Sbjct: 79 PLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFL 138
Query: 126 ICAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLH--FWMYSVCIKL-LP 182
P I W + S ++ F F + + I LP
Sbjct: 139 WVIP---------ILGWNH------FMQQTSVRREDKCETDFYDVTWFKVMTAIINFYLP 183
Query: 183 CLVLSVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAH 229
L++ Y I + + + + + K+ K +
Sbjct: 184 TLLMLWF-YAKI--YKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYT 227
Score = 36.2 bits (83), Expect = 0.013
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 4/107 (3%)
Query: 198 RQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQGILALLSGILGR 257
+ ++ K + + R + A L ++ F++ P I ++
Sbjct: 342 QTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKN 401
Query: 258 CFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLFKPK 304
C E + L +N +N ++Y + F+ TF ++ +
Sbjct: 402 CCNEHLH----MFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIR 444
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.048
Identities = 52/282 (18%), Positives = 81/282 (28%), Gaps = 79/282 (28%)
Query: 14 LTHKELSATPINRILTGLAVTDL-LVMLEYVPFSIYM-------------YFVHVR-SKL 58
LT E + + + L DL +L P + + + HV KL
Sbjct: 298 LTPDE-VKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 59 YFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHK------CSASCSESSC 112
SL +L + ++ +S+F I P S+
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFP-------PSAHI--PTILLSLIWFDVIKSDVMV 406
Query: 113 YISVLVAYILPILICAPSYFVFSIREIQIWESGKLEALYQLHLS-------PLAKENNGL 165
++ L Y L + P SI I + KLE Y LH S P +++ L
Sbjct: 407 VVNKLHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 166 IFSLHFWMYSVCIKLLPCLVLSVISYYLIGALRQASK----RK-----HQLKSK---SGT 213
I + Y S I ++L + R L+ K T
Sbjct: 465 I-PPYLDQY----------FYSHIGHHLKNI-EHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 214 PCPQS-----------KVEKRM---DRTAHMLVAVLLLFLIT 241
S + + D LV +L FL
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 31.8 bits (72), Expect = 0.33
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 226 RTAHMLVAVLLLFLITEFP------QGILALLSGILGRCFFESCYQPYGEVMDILALLNG 279
+ V ++L F P LL I C FE+ + + + LA +
Sbjct: 410 KALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHC 469
Query: 280 AINFILYCSMSRQFRVTFGQLFKPKNVL 307
+N ILY + +F+ + L
Sbjct: 470 CLNPILYAFLGAKFKTSAQHALTSGRPL 497
Score = 29.5 bits (66), Expect = 1.6
Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 29/139 (20%)
Query: 7 NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVH----------VRS 56
N L I+V+ +++ + ++ L+V DLL ++ +PF + V
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVANWYFGNFLCKAVHV 124
Query: 57 KLYFTYAGSLFILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISV 116
S++IL + ++ R++AI + +
Sbjct: 125 IYTVNLYSSVWILAFI-----------------SLDRYLAIVHATNSQRPRKLLAEKVVY 167
Query: 117 LVAYILPILICAPSYFVFS 135
+ +I +L+ P F+F+
Sbjct: 168 VGVWIPALLLTIP-DFIFA 185
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate
receptor, imprinting, protein evolution, signaling
protein; NMR {Monodelphis domestica}
Length = 151
Score = 26.9 bits (59), Expect = 5.7
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 155 LSPLAKENNGLIFSLHFWMY--SVC--IKLLP-----CLVLSVISYYLIGALRQASKRKH 205
L+ L ++ + + +C K P C L+ I+ + +
Sbjct: 22 LNSLKNDSGYSVAYSEKGLIYIGICGGTKNCPSGVGVCFGLTKINAGSWNSQLMYVDQVL 81
Query: 206 QLKSKSGTPCPQSKVEKRM 224
QL G PCP K
Sbjct: 82 QLVYDDGAPCPSKNALKYK 100
>2w2j_A Carbonic anhydrase-related protein; lyase, metal-binding; 1.60A
{Homo sapiens}
Length = 291
Score = 26.7 bits (59), Expect = 10.0
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 44 PFSIYMYFVHVRSKLYFTYAGSL 66
F+ + Y+ Y GSL
Sbjct: 201 CFNPNTLLPDPLLRDYWVYEGSL 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.141 0.429
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,736,890
Number of extensions: 267168
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 32
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.2 bits)