RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6052
         (323 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 61.5 bits (148), Expect = 2e-11
 Identities = 47/295 (15%), Positives = 92/295 (31%), Gaps = 28/295 (9%)

Query: 7   NLLNIVVLTHKELSATPINRILTGLAVTDLLVMLEYVPFSIYMYFVHVRSKLYFTYAGSL 66
           N L + V    +   TP+N IL  LAV DL ++      ++Y           +   G  
Sbjct: 55  NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG------YFVFGPT 108

Query: 67  FILIHMHFSQLLHTISIFQTLTLAICRHVAIRFPHKCSASCSESSCYISVLVAYILPILI 126
              +   F+ L   I+++  + LAI R+V +  P          +         +     
Sbjct: 109 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACA 168

Query: 127 CAPSYFVFSIREIQIWESGKLEALYQLHLSPLAKENNGLIFSLHFWMYSVCIKLLPCLVL 186
             P            W     E +           +             V   ++P +V+
Sbjct: 169 APPLVG---------WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVI 219

Query: 187 SVISYYLIGALRQASKRKHQLKSKSGTPCPQSKVEKRMDRTAHMLVAVLLLFLITEFPQG 246
                 L+  +++A+ +              +  +K       M++ +++ FLI   P  
Sbjct: 220 FFCYGQLVFTVKEAAAQ----------QQESATTQKAEKEVTRMVIIMVIAFLICWLPYA 269

Query: 247 ILALLSGILGRCFFESCYQPYGEVMDILALLNGAINFILYCSMSRQFRVTFGQLF 301
            +A          F   +     +    A  +   N ++Y  M++QFR       
Sbjct: 270 GVAFYIFTHQGSDFGPIFMT---IPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL 321


>d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 133

 Score = 26.3 bits (57), Expect = 3.6
 Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 16/104 (15%)

Query: 151 YQLHLSPLAKENNGLIFSLHFWMYSVCIKLLP---------CLVLSVISYYLIGALRQAS 201
           +   LS L+             +  + I             C   + IS        +  
Sbjct: 11  HLFDLSSLSGRAGFTAAYSEKGLVYMSICGENENCPPGVGACFGQTRISVGKANKRLRYV 70

Query: 202 KRKHQLKSKSGTPCPQSKVEKRM-------DRTAHMLVAVLLLF 238
            +  QL  K G+PCP                  A      +L+ 
Sbjct: 71  DQVLQLVYKDGSPCPSKSGLSYKSVISFVCRPEAGPTNRPMLIS 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,160,023
Number of extensions: 51725
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.9 bits)