BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6053
(614 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Query: 91 NLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEE 150
NLP G + +T+ +TGA+GFLG+ L+ ++LR+ ++ L+R + ++AR+R+E+
Sbjct: 65 NLP---GPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEK 121
Query: 151 LFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRF 210
F S LL+ + D++ ++GD +L + + + LA VD+++ AA +
Sbjct: 122 TFDSGDPELLRHFK-ELAADRLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXV-- 178
Query: 211 DEALKKAVLL--NTRGTKMMLSLAKEMKHLELFVHISTA 247
A L N GT ++ +A K L+ F ++STA
Sbjct: 179 -NAFPYHELFGPNVAGTAELIRIALTTK-LKPFTYVSTA 215
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 53/239 (22%)
Query: 92 LPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEEL 151
L D + G TL +TGA+GFLG L+E + S +IY +R EE+
Sbjct: 60 LEDSLSHRPLGNTL-LTGATGFLGAYLIEALQGYS---HRIYCFIRADN--------EEI 107
Query: 152 FASPLFNLLKSVHGQKIIDKVLP----ISGDAEADELAIKESDRQLLASEVDIMIH-GAA 206
L L ++ ++ L I GD E D +L D +IH GA
Sbjct: 108 AWYKLXTNLNDYFSEETVEXXLSNIEVIVGDFEC-------XDDVVLPENXDTIIHAGAR 160
Query: 207 TIRF--DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPP 264
T F D+ +K +N +GT ++ LA++ H +++ST
Sbjct: 161 TDHFGDDDEFEK---VNVQGTVDVIRLAQQ--HHARLIYVSTI----------------- 198
Query: 265 TDPHKLIERVEMMSEDTVEKRAKEFLGEFPNS-YAYTKCLSEGLVVEAMNNGMPCLMLR 322
+ ++ +ED A + G+ S Y +K SE V+EA+NNG+ ++R
Sbjct: 199 ----SVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVR 253
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 53/239 (22%)
Query: 92 LPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEEL 151
L D + G TL +TGA+GFLG L+E + S +IY +R EE+
Sbjct: 141 LEDSLSHRPLGNTL-LTGATGFLGAYLIEALQGYS---HRIYCFIRADN--------EEI 188
Query: 152 FASPLFNLLKSVHGQKIIDKVLP----ISGDAEADELAIKESDRQLLASEVDIMIH-GAA 206
L L ++ ++ +L I GD E D +L +D +IH GA
Sbjct: 189 AWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFEC-------MDDVVLPENMDTIIHAGAR 241
Query: 207 TIRF--DEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPP 264
T F D+ +K +N +GT ++ LA++ H +++ST
Sbjct: 242 TDHFGDDDEFEK---VNVQGTVDVIRLAQQ--HHARLIYVSTI----------------- 279
Query: 265 TDPHKLIERVEMMSEDTVEKRAKEFLGEFPNS-YAYTKCLSEGLVVEAMNNGMPCLMLR 322
+ ++ +ED A + G+ S Y +K SE V+EA+NNG+ ++R
Sbjct: 280 ----SVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVR 334
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 269 KLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLML---RPSI 325
K IER VE KE + E P +A ++ + E +NN LML R +
Sbjct: 83 KTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEV 142
Query: 326 IIPVWREPLPGWTD 339
I+P WR+ + G D
Sbjct: 143 ILPYWRQLIDGLKD 156
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 269 KLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLML---RPSI 325
K IER VE KE + E P +A ++ + E +NN LML R +
Sbjct: 83 KTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEV 142
Query: 326 IIPVWREPLPGWTD 339
I+P WR+ + G D
Sbjct: 143 ILPYWRQLIDGLKD 156
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 269 KLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLML---RPSI 325
K IER VE KE + E P +A ++ + E +NN LML R +
Sbjct: 109 KTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEV 168
Query: 326 IIPVWREPLPGWTD 339
I+P WR+ + G D
Sbjct: 169 ILPYWRQLIDGIKD 182
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli
Adenylosuccinate Lyase
Length = 462
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 269 KLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLML---RPSI 325
K IER VE KE + E P +A ++ + E +NN L L R +
Sbjct: 83 KTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALXLKTARDEV 142
Query: 326 IIPVWREPLPGWTD 339
I+P WR+ + G D
Sbjct: 143 ILPYWRQLIDGLKD 156
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 105 LFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNAR-QRIEELFASPLFNLLKSV 163
L +TG GF+G + IL K P+ + I I K G + +++L P + +K
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINI---DKLGYGSNPANLKDLEDDPRYTFVK-- 60
Query: 164 HGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLL--- 220
GD AD +KE L +VD ++H AA D ++ +
Sbjct: 61 -------------GDV-ADYELVKE-----LVRKVDGVVHLAAESHVDRSISSPEIFLHS 101
Query: 221 NTRGTKMMLSLAKEMKHLELFVHIST 246
N GT +L + FVH+ST
Sbjct: 102 NVIGTYTLLESIRRENPEVRFVHVST 127
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
K + +TG +GF+G + + P+V + G A L++
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN--------------LEA 50
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKA---VL 219
+ G D+V + GD EL K LA++ D ++H AA D +L +
Sbjct: 51 ILG----DRVELVVGDIADAELVDK------LAAKADAIVHYAAESHNDNSLNDPSPFIH 100
Query: 220 LNTRGTKMMLSLAKEMKHLELFVHIST 246
N GT +L A+ K+ F H+ST
Sbjct: 101 TNFIGTYTLLEAAR--KYDIRFHHVST 125
>pdb|1VKN|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|B Chain B, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|C Chain C, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
pdb|1VKN|D Chain D, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Tm1782) From Thermotoga Maritima At 1.80 A
Resolution
Length = 351
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 70/165 (42%), Gaps = 44/165 (26%)
Query: 107 MTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPL---------- 156
+ GA+G+ G L+ ++L+ P K Y+ R GK ++EE+F S L
Sbjct: 18 IIGATGYTGLELV-RLLKNHPEAKITYLSSRTYAGK----KLEEIFPSTLENSILSEFDP 72
Query: 157 -------------------FNLLKSVHGQKIIDKVLPISGDAEADELAIKES--DRQLLA 195
++L++ + G KIID + D D+ + ++L
Sbjct: 73 EKVSKNCDVLFTALPAGASYDLVRELKGVKIID----LGADFRFDDPGVYREWYGKELSG 128
Query: 196 SEVDIMIHGAATIRFDEALKKAVLLNTRG---TKMMLSLAKEMKH 237
E ++G + +E +K A ++ G T ++L+LA +KH
Sbjct: 129 YENIKRVYGLPELHREE-IKNAQVVGNPGCYPTSVILALAPALKH 172
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 30/166 (18%)
Query: 97 GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIE--ELFAS 154
G+T +GKT M A + + L I + + N+K ++G N E E++
Sbjct: 93 GQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLK--------ERGWNYEMECEYIEIYNE 144
Query: 155 PLFNLLKSVHGQKIIDKVL-----PISGDAEADELAIKESDRQLL--ASEVDIMIHGAAT 207
+ +LL+ ID++L I D E I R + S+VD ++ A+
Sbjct: 145 TILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASK 204
Query: 208 IRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQE 253
+R A + N R ++ H VHI+ H E
Sbjct: 205 MRSTAATRS----NERSSR---------SHSVFMVHINGRNLHTGE 237
>pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM
SINORHIZOBIUM Meliloti 1021
Length = 271
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFN 158
+ GKT F+TG S +G + +++ + V Y+ NA +R A + +
Sbjct: 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYV--------NAAER-----AQAVVS 74
Query: 159 LLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAA 206
++ G+ + + + DAEA E AI+E+ L +DI+++ A
Sbjct: 75 EIEQAGGRAV--AIRADNRDAEAIEQAIRETVEAL--GGLDILVNSAG 118
>pdb|3E03|A Chain A, Crystal Structure Of A Putative Dehydrogenase From
Xanthomonas Campestris
pdb|3E03|B Chain B, Crystal Structure Of A Putative Dehydrogenase From
Xanthomonas Campestris
pdb|3E03|C Chain C, Crystal Structure Of A Putative Dehydrogenase From
Xanthomonas Campestris
Length = 274
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 99 TFTGKTLFMTGASGFLGKVLLEKILRKSPNV 129
T +GKTLF+TGAS +G + + R NV
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANV 33
>pdb|2FMU|A Chain A, Crystal Structure Of A Tat-Interacting Protein Homologue
(Htatip2, Aw111545, Cc3, Tip30) From Mus Musculus At
2.30 A Resolution
Length = 248
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139
K++F+ GASG GKVLL++IL ++ K+ ++ R+K
Sbjct: 25 KSVFILGASGETGKVLLKEILGQNL-FSKVTLIGRRK 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,944,443
Number of Sequences: 62578
Number of extensions: 754136
Number of successful extensions: 2281
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2265
Number of HSP's gapped (non-prelim): 24
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)