RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6053
(614 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 192 bits (490), Expect = 8e-55
Identities = 68/347 (19%), Positives = 132/347 (38%), Gaps = 37/347 (10%)
Query: 80 YKPPVLSEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139
+ NLP E +T+ +TGA+GFLG+ L+ ++LR+ ++ L+R +
Sbjct: 54 FIDADTLATAVNLPGPSPE---LRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE 110
Query: 140 KGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVD 199
++AR+R+E+ F S LL+ + D++ ++GD +L + + + LA VD
Sbjct: 111 SDEDARRRLEKTFDSGDPELLRHFK-ELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVD 169
Query: 200 IMIHGAATIRFD--EALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLY 257
+++ AA + L N GT ++ +A K L+ F ++STA +
Sbjct: 170 LIVDSAAMVNAFPYHELFGP---NVAGTAELIRIALTTK-LKPFTYVSTADVGAA---IE 222
Query: 258 EKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMN-NGM 316
+ D + + G + Y +K E L+ EA + +
Sbjct: 223 PSAFTEDADIRVISP-------------TRTVDGGWAGGYGTSKWAGEVLLREANDLCAL 269
Query: 317 PCLMLRPSIIIPVWREPLPGWTDNINGPTGLLIGA--------GKGVIRTMFCDNTGYAD 368
P + R +I+ G + + T +++ + + D
Sbjct: 270 PVAVFRCGMIL--ADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFD 327
Query: 369 FLPVDITINGIFVAIWAYLSQKEHRQSIVHLTSSQEWQVSWQEIIDI 415
LPV I V + H+ + + + E +D
Sbjct: 328 GLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDW 374
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 65.8 bits (161), Expect = 1e-11
Identities = 34/278 (12%), Positives = 73/278 (26%), Gaps = 66/278 (23%)
Query: 106 FMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHG 165
+ GA+G LG I ++ ++ R + R+ L
Sbjct: 17 AVLGATGLLGHHAARAIRAAGHDLV---LIHR--PSSQIQ-RLAYL-------------- 56
Query: 166 QKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVL-LNTRG 224
+ + + + L +D +I A + +
Sbjct: 57 -----EPECRVAE-----MLDHAGLERALR-GLDGVIFSAGYYPSRPRRWQEEVASALGQ 105
Query: 225 TKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEK 284
T + + + + +++ +A + P P E
Sbjct: 106 TNPFYAACLQAR-VPRILYVGSA------YAMPRHPQGLPGH----------------EG 142
Query: 285 RAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLPGWTDNINGP 344
+ L +SY K + E NG+P ++ P +++ G D
Sbjct: 143 LFYDSLPSGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVL--------GELDIGPTT 194
Query: 345 TGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVA 382
++ G G + D G+ +A
Sbjct: 195 GRVITAIGNGEMTHYVAGQRNVID---AAEAGRGLLMA 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 1e-06
Identities = 62/473 (13%), Positives = 138/473 (29%), Gaps = 129/473 (27%)
Query: 164 HGQKIIDKVLP-ISGDAEADELAIKESDRQLLASEV--DIMIHGAATIRFDEALKKAVLL 220
+ I+ + + + +++ + +L+ E I++ A L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---WTL 71
Query: 221 NTRGTKMMLSLAKEMKHLELFVH--ISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMS 278
++ +M ++ FV + Y L + E P IE+ + +
Sbjct: 72 LSKQEEM----------VQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLY 120
Query: 279 EDTVEKRAKEFLGEFPNSYAYTKCLSE-----GLVVEAMNNGMP-----CL---MLRPSI 325
D + AK + + L E ++++ G+ + +
Sbjct: 121 ND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----GVLGSGKTWVALDVCLSYK 175
Query: 326 IIPVWREPLPG---WTD--NINGPTGLLIGAGK--GVIRTMFCDNTGYADFLPVDITING 378
+ + W + N N P +L K I + + ++ + + I +
Sbjct: 176 VQCK----MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI--HS 229
Query: 379 IFVAIWAYLSQKEHRQS-IV--HLTSSQEWQV-----------SWQEIIDIGKSIVTTEV 424
I + L K + +V ++ +++ W ++++ D + TT +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 425 PLNGCVW--YPGGS---------MKSNRLLHQICVIFFHMIPAYFLDAIIFLSGNKPCLV 473
L+ P + L ++ P +II S
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT----NP--RRLSIIAES------- 336
Query: 474 KIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRERIEYKIDG-EDLDIKKYFQDC 532
I+D + W+ + HV IE ++ E + +K F
Sbjct: 337 -IRDGLA------------TWDN---WKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 533 IMATRIFILKE----MPETLPAARRHMRIMYWVDVIAKTLFFVFILYTLSSYS 581
+ L + W DVI + ++ L YS
Sbjct: 379 ------SVFPPSAHIPTILLS--------LIWFDVIKSDVM--VVVNKLHKYS 415
Score = 32.5 bits (73), Expect = 0.47
Identities = 40/273 (14%), Positives = 78/273 (28%), Gaps = 84/273 (30%)
Query: 28 MFADLAIMFADLPIMFADFSL---PLEFIRCEVIVSELVM--AANKVNNMNVPYETFYKP 82
MF L++ I SL + V+V++L K T P
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTISIP 429
Query: 83 PVLSEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEK--ILRK------SPNVKKIYI 134
+ E L + L + +++ I + P Y
Sbjct: 430 SIYLELKVKLENEYA----------------LHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 135 ---LMRQKKGKNARQRIEELFASPLFNL--LKSVHGQKIIDKVLPISGDAE-ADELA--- 185
+ K +R+ LF + L+ QKI + + L
Sbjct: 474 YSHIGHHLKNIEHPERM-TLFRMVFLDFRFLE----QKIRHDSTAWNASGSILNTLQQLK 528
Query: 186 -----IKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLEL 240
I ++D + I+ F L ++ S K+ +L
Sbjct: 529 FYKPYICDNDPKYERLVNAIL-------DF---------LPKIEENLICS-----KYTDL 567
Query: 241 FVHISTAYCHLQEKVLYEKPYPPPTDPHKLIER 273
+ I+ +++ ++E + HK ++R
Sbjct: 568 -LRIALMA---EDEAIFE-------EAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 3e-06
Identities = 76/442 (17%), Positives = 133/442 (30%), Gaps = 170/442 (38%)
Query: 76 YETFYKPPVLSEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYIL 135
Y+T Y V L A L +++R + + +K++
Sbjct: 177 YQT-YHVLV------------------GDLIKFSAE------TLSELIRTTLDAEKVF-- 209
Query: 136 MRQKKGKNARQRIEELFASPLFNLLKSVHGQKIIDKV-LPISGDAEADELAIKESDRQLL 194
+G N + +E +P + L S+ + P+ G + QL
Sbjct: 210 ---TQGLNILEWLENPSNTPDKDYLLSI-------PISCPLIG------VI------QLA 247
Query: 195 ASEVDIMIHG-----------AATIRFDEALKKAVLLNTRGT-KMMLSLAKEMKHLELFV 242
V + G AT + L AV + + + ++ + +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGH-SQGLVTAVAIAETDSWESFFVSVRKA--ITVLF 304
Query: 243 HISTAYCHLQEKVLYEKPYPPPTDPHKLIERVE-----M-----MSEDTVEKRAKEFLGE 292
I C+ Y PP+ +E E M ++++ V+ +
Sbjct: 305 FIGVR-CYEA----YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT--- 356
Query: 293 FPNSYAYTKCLSEGLVVE-AMNN--------GMP------CLMLR----PSII----IPV 329
NS+ L G VE ++ N G P L LR PS + IP
Sbjct: 357 --NSH-----LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF 409
Query: 330 W-REP------LPGWTDNINGP--TGLLIGAGKGVIRTMFCDNTGY--ADF-LPVDITIN 377
R+ LP + P + LL+ A + + + +N + D +PV T +
Sbjct: 410 SERKLKFSNRFLP-----VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 378 GIFVAIWAYLSQKEHRQSIVH-----LTSSQEWQVSWQE--------IIDIGKSIVTTEV 424
G + SI + V W+ I+D G
Sbjct: 465 G--------SDLRVLSGSISERIVDCIIRL---PVKWETTTQFKATHILDFG-------- 505
Query: 425 PLNGCVWYPGGSMKSNRLLHQI 446
PGG+ L H+
Sbjct: 506 --------PGGASGLGVLTHRN 519
Score = 40.8 bits (95), Expect = 0.001
Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 108/296 (36%)
Query: 87 EEYRNLP------DRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140
+ Y+ +R + T GF +L+ I+ +P + I +K
Sbjct: 1634 DLYKTSKAAQDVWNR-ADNHFKDTY------GF---SILD-IVINNP--VNLTIHFGGEK 1680
Query: 141 GKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIK---ESDR------ 191
GK RI E +++ +F V G+ +K+ E +E + S++
Sbjct: 1681 GK----RIRENYSAMIFE--TIVDGKLKTEKIFK-----EINEHSTSYTFRSEKGLLSAT 1729
Query: 192 ---Q--LLASEVDIM--------I--------H--G--------AATIRFDEALKKAVLL 220
Q L E I H G A + + ++ ++
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE---VV 1786
Query: 221 NTRGTKMMLSLAKEMKHLELF----VHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEM 276
RG M +++ ++ + ++ ++ L ++ERV
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL-----------QYVVERVGK 1835
Query: 277 MSEDTVE----------------KRAKEFLGEFPNSYAYTKC----LSEGLVVEAM 312
+ VE RA + + N K L + L +E +
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 36.6 bits (84), Expect = 0.029
Identities = 27/155 (17%), Positives = 41/155 (26%), Gaps = 58/155 (37%)
Query: 494 WEFRNEY-----VHVL--------RKIMNKRERIEYKIDGEDLDIKKYFQDCIMATRIFI 540
EF N Y +H L + K + + IK Y IMA R F
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL----------IKNYITARIMAKRPFD 138
Query: 541 LKEMPETLPAARRH--------------------MRIMY---------WVDVIAKTLFFV 571
K A +R +Y + A+TL
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL--- 195
Query: 572 FILYTLSSYSETLRNLFQVFFNIVQYISGLFVIPS 606
L + +F NI++++ P
Sbjct: 196 ---SELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Score = 33.1 bits (75), Expect = 0.36
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 452 HMIPAY-FLDAIIFLSGNKPCLVKIQDRINKGFEVFEYYANNQWEFRNEYVHVLRKIMN- 509
H Y F +I+ + N P + I KG + E Y+ +E + KI
Sbjct: 1652 HFKDTYGF--SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 510 ---KRERIEYKIDGEDLDIKKYFQDCIMATRIFILKEM 544
++ + L ++ Q + +++
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Score = 30.4 bits (68), Expect = 2.6
Identities = 33/209 (15%), Positives = 61/209 (29%), Gaps = 96/209 (45%)
Query: 26 AIMFADLAIMFADL--------PIMFADFSL-------------PLE------FIR---- 54
A+ + A F DL FA SL +E F R
Sbjct: 1735 ALTLMEKAA-FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 55 ------CEVIVSELVMAANKVNNMNVPYETFYKPPVLSEEYRNLPDRIGETFTGKTLFMT 108
E+ S M A +N P R+ +F+ + L
Sbjct: 1794 QVAVPRDELGRSNYGMIA--IN----------------------PGRVAASFSQEAL--- 1826
Query: 109 GASGFLGKVLLEKILRKSP--------NVK-KIYILMRQKKGKNARQRIEELFASPLFNL 159
+ ++E++ +++ NV+ + Y+ + ++ + N+
Sbjct: 1827 -------QYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA------LDTVT-----NV 1868
Query: 160 LKSVHGQKIIDKVLPISGDAEADELAIKE 188
L + QKI L S E ++
Sbjct: 1869 LNFIKLQKIDIIELQKSLSLE----EVEG 1893
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 41.2 bits (97), Expect = 6e-04
Identities = 39/243 (16%), Positives = 68/243 (27%), Gaps = 67/243 (27%)
Query: 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLL 160
K L +TGA+G LG+V+ E++ + + L A E
Sbjct: 2 AMKRLLVTGAAGQLGRVMRERLAPMAEIL----RLADLSPLDPAGPNEE--C-------- 47
Query: 161 KSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLL 220
+ D AD A+ + + D ++H I ++ ++ +
Sbjct: 48 --------------VQCDL-ADANAVNA-----MVAGCDGIVHLGG-ISVEKPFEQILQG 86
Query: 221 NTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSED 280
N G + A+ V S+ H + P D
Sbjct: 87 NIIGLYNLYEAARAHG-QPRIVFASSN--H----TIGYYPQTERLG------------PD 127
Query: 281 TVEKRAKEFLGEFPNS-YAYTKCLSEGLV-VEAMNNGMPCLMLRPSIIIPVWREP--LPG 336
+ P+ Y +KC E L + G ++R P L
Sbjct: 128 VPAR---------PDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLST 178
Query: 337 WTD 339
W
Sbjct: 179 WFS 181
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 40.4 bits (95), Expect = 0.001
Identities = 22/138 (15%), Positives = 41/138 (29%), Gaps = 31/138 (22%)
Query: 194 LASEVDIMIHGAATIRFDEALKKAVL---LNTRGTKMMLSLAKEMKHLELFVHISTAYCH 250
L E D + H A ++ + NT T + K K L+ V+ +
Sbjct: 96 LQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAG--- 152
Query: 251 LQEKVLYEKPY--PPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNS-YAYTKCLSEGL 307
+ EK + T+ ++ +S Y+ +K E
Sbjct: 153 ---CSIAEKTFDDAKATEETDIVSLHN------------------NDSPYSMSKIFGEFY 191
Query: 308 VVE-AMNNGMPCLMLRPS 324
V + +P + R
Sbjct: 192 SVYYHKQHQLPTVRARFQ 209
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 40.1 bits (94), Expect = 0.001
Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 33/148 (22%)
Query: 93 PDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELF 152
+ + K + + G +GF+G L ++IL + ++ + R+ +L
Sbjct: 15 QTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWE--VFGM------DMQTDRLGDLV 66
Query: 153 ASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQL----LASEVDIMIHGAATI 208
+ + D I+ + E E +K+ D L +A+ +
Sbjct: 67 KHERMHFFE-------GD----ITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVF 115
Query: 209 RFDEALKKAVLLNTRGTKMMLSLAKEMK 236
L+ ++ A +
Sbjct: 116 E----------LDFEANLPIVRSAVKYG 133
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 39.2 bits (92), Expect = 0.003
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 29/110 (26%)
Query: 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR-QKKGKNARQRIEELFASPLFN 158
+T+ +TG +G GK + K+L + N KKI + R + K +
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVL-DTTNAKKIIVYSRDELKQSEMAMEFND-------- 69
Query: 159 LLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASE-VDIMIHGAAT 207
++ GD +++ +R A E VDI IH AA
Sbjct: 70 -----------PRMRFFIGD-------VRDLERLNYALEGVDICIHAAAL 101
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 36.9 bits (86), Expect = 0.010
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 101 TGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNAR 145
T K + + GA+G G+ LL + P + K+ R+ ++ R
Sbjct: 4 TPKRVLLAGATGLTGEHLL-DRILSEPTLAKVIAPARKALAEHPR 47
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 37.0 bits (86), Expect = 0.014
Identities = 21/175 (12%), Positives = 66/175 (37%), Gaps = 32/175 (18%)
Query: 81 KPPVLSEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKK 140
+ ++ + + + G +G +G+ + ++I +++P +K++++
Sbjct: 14 DTELFHQDINANEKELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHVV----- 66
Query: 141 GKNARQRIEELFASPLFNL---LKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLAS- 196
++ + + L ++S G D + D + E D + A
Sbjct: 67 ---------DISENNMVELVRDIRSSFGYINGD-FQTFALD-----IGSIEYDAFIKADG 111
Query: 197 EVDIMIHGAA-----TIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246
+ D +++ +A + + L + + +N T + + + + + +ST
Sbjct: 112 QYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAG-AKKYFCVST 165
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 35.9 bits (83), Expect = 0.025
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139
K++F+ GASG G+VLL K + + K+ ++ R+K
Sbjct: 19 KSVFILGASGETGRVLL-KEILEQGLFSKVTLIGRRK 54
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 35.4 bits (82), Expect = 0.037
Identities = 35/223 (15%), Positives = 66/223 (29%), Gaps = 65/223 (29%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
L +TGA+G +G + + + V+ + G + EE+
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVR---LSDIVDLGA--AEAHEEI----------- 46
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNT 222
++ D AD A+ + L + D +IH + + + N
Sbjct: 47 ------------VACDL-ADAQAVHD-----LVKDCDGIIHLGG-VSVERPWNDILQANI 87
Query: 223 RGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTV 282
G + A+ + V S+ H + P D +
Sbjct: 88 IGAYNLYEAARNLG-KPRIVFASSN--H----TIGYYPRTTRID------------TEVP 128
Query: 283 EKRAKEFLGEFPNS-YAYTKCLSEGLV-VEAMNNGMPCLMLRP 323
+ P+S Y +KC E L + + L +R
Sbjct: 129 RR---------PDSLYGLSKCFGEDLASLYYHKFDIETLNIRI 162
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 35.1 bits (81), Expect = 0.060
Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 33/134 (24%)
Query: 107 MTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQ 166
+ G +GF+G L E++LR+ ++Y L I P F+ ++
Sbjct: 5 ILGVNGFIGNHLTERLLREDHY--EVYGL------DIGSDAISRFLNHPHFHFVEG---- 52
Query: 167 KIIDKVLPISGDAEADELAIKESDRQL----LASEVDIMIHGAATIRFDEALKKAVLLNT 222
IS +E E +K+ D L +A+ ++ + L+
Sbjct: 53 -------DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFE----------LDF 95
Query: 223 RGTKMMLSLAKEMK 236
++ + +
Sbjct: 96 EENLRIIRYCVKYR 109
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 32.8 bits (74), Expect = 0.34
Identities = 40/322 (12%), Positives = 83/322 (25%), Gaps = 65/322 (20%)
Query: 103 KTLFMTGASGFLGKVLLEKILRK--SPNVKKIYILMRQKKGKNARQRIEELFASPLFNLL 160
+ G +G +G L E + K+Y + AR+
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGV--------ARRTRPAWHEDN----- 48
Query: 161 KSVHGQKIIDKVLPISGDAEADELAIKESDRQLLAS--EVDIMIHGAATIRFDEALKKAV 218
+ + D ++ + + L+ +V + + R E
Sbjct: 49 ----------PINYVQCD-----ISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEA 93
Query: 219 LLNTRGTKMMLS-LAKEMKHLELFVHIST--AYCHLQEKVLYEKPYPPPTDPHKLIERVE 275
N++ + +L + +L+ + Y E + + PP
Sbjct: 94 --NSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPP----------- 140
Query: 276 MMSEDTVEKRAKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMPCLMLRPSIIIPVWREPLP 335
E L Y L G+ + RP I P
Sbjct: 141 ----------YTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLTWSVHRPGNIF----GFSP 186
Query: 336 GWTDNINGPTGL--LIGAGKGVIRTMFCDNTGYADFLPVDITINGIFVAIWAYLSQKEHR 393
N+ G + I +G + + + IWA +
Sbjct: 187 YSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKN 246
Query: 394 QSI-VHLTSSQEWQVSWQEIID 414
++ V +W+ W+ + +
Sbjct: 247 EAFNVSNGDVFKWKHFWKVLAE 268
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 31.6 bits (72), Expect = 0.63
Identities = 38/284 (13%), Positives = 83/284 (29%), Gaps = 70/284 (24%)
Query: 108 TGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKSVHGQK 167
GA+G +G+ L ++++ K G + +E+ L ++ +
Sbjct: 20 IGAAGMVGRKLTQRLV---------------KDGSLGGKPVEKFT---LIDVFQPEAPAG 61
Query: 168 IIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATI------RFDEALKKAVLLN 221
V + D L+ +L+ + D++ H AA + FD+ + +N
Sbjct: 62 FSGAVDARAAD-----LSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYR----IN 112
Query: 222 TRGTKMMLSLAKE----MKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMM 277
GT+ + + + V S+ + P P P
Sbjct: 113 LDGTRYLFDAIRIANGKDGYKPRVVFTSSIAV-------FGAPLPYPIP----------- 154
Query: 278 SEDTVEKRAKEFLGEFP-NSYAYTKCLSEGLV-VEAMNNGMPCLMLRPSIIIPVWREPLP 335
++ P SY K + E L+ + + +R I +P
Sbjct: 155 -DEFHTT---------PLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNA 204
Query: 336 GWTDNINGPTGLLIGAGKGVIRTMFCDNTGYADFLPVDITINGI 379
+ + +L G + + + +
Sbjct: 205 AASGFFS---NILREPLVGQEAVLPVPESIRHWHASPRSAVGFL 245
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 31.8 bits (73), Expect = 0.66
Identities = 26/172 (15%), Positives = 50/172 (29%), Gaps = 38/172 (22%)
Query: 159 LLKSVHGQKIIDKVL--PISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKK 216
+ + I+ + + D E D ++VD ++H AAT +
Sbjct: 22 IKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATRGSQGKI-S 80
Query: 217 AVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLY-EKPYPPPTDPHKLIERVE 275
N T+ + E + V+ ST Y ++ P
Sbjct: 81 EFHDNEILTQNLYDACYENN-ISNIVYASTISA-------YSDETSLP------------ 120
Query: 276 MMSEDTVEKRAKEFLGEFPNS-YAYTKCLSEGLVVEAMNN--GMPCLMLRPS 324
+E + P+ Y +K E + + G+ LR +
Sbjct: 121 -WNEKELPL---------PDLMYGVSKLACEHI-GNIYSRKKGLCIKNLRFA 161
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 31.2 bits (71), Expect = 0.87
Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 38/167 (22%)
Query: 86 SEEYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNAR 145
+ + R F G + + GA+G + + LL ++ K ++R N
Sbjct: 5 HHHHHHSSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPV---AMVR-----NEE 56
Query: 146 QRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGA 205
Q L G ++ ++E AS +D ++ A
Sbjct: 57 Q------GPELRER-----------------GASDIVVANLEEDFSHAFAS-IDAVVF-A 91
Query: 206 ATIRFDEALKKAVLLNTRGTKMMLSLAKEM--KHLELFVHISTAYCH 250
A K +L++ G + A++ K F+ +S+
Sbjct: 92 AGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKR---FIMVSSVGTV 135
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 31.1 bits (71), Expect = 0.93
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 199 DIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHISTAY 248
+++H AA R D A LN + LAKE + ++IS+ Y
Sbjct: 62 HVIVHCAAERRPDVVENQPDAASQLNVDASGN---LAKEAAAVGAFLIYISSDY 112
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 31.1 bits (71), Expect = 1.0
Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 33/167 (19%)
Query: 82 PPVLSEEYRNLPDRI--GETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQK 139
P V ++ + + K F+TG +G + E +R +
Sbjct: 5 PDVEGDDCLPAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASR--SLP 62
Query: 140 KGKNARQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLAS--E 197
+ A +++ + LP+S D A+ + Q L
Sbjct: 63 RVLTAARKLAGATGR----------------RCLPLSMDV-RAPPAVMAAVDQALKEFGR 105
Query: 198 VDIMIHGAATIRFD---EALK----KAVL-LNTRGT-KMMLSLAKEM 235
+DI+I+ AA F AL K V+ ++T GT + L ++
Sbjct: 106 IDILINCAA-GNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKF 151
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 31.0 bits (70), Expect = 1.0
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 12/123 (9%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFN---L 159
T+ +TGASG G+++ +K+ S L+R +GK ++F + + +
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKIGGEADVFIGDITDADSI 63
Query: 160 LKSVHGQKIIDKVLPISG-----DAEADELAIKESDRQLLASEVDIMIHGAATIRFDEAL 214
+ G ID ++ ++ D + + + +A
Sbjct: 64 NPAFQG---IDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAA 120
Query: 215 KKA 217
K A
Sbjct: 121 KVA 123
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 31.2 bits (71), Expect = 1.1
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 25/119 (21%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
+ + G +GF+G L E++LR+ ++Y L I P F+ ++
Sbjct: 316 TRVLILGVNGFIGNHLTERLLREDHY--EVYGL------DIGSDAISRFLNHPHFHFVEG 367
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQL----LASEVDIMIHGAATIR--FDEALK 215
IS +E E +K+ D L +A+ ++ + F+E L+
Sbjct: 368 -----------DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLR 415
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 31.1 bits (71), Expect = 1.1
Identities = 39/231 (16%), Positives = 72/231 (31%), Gaps = 53/231 (22%)
Query: 96 IGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASP 155
I + +T+ +TG +GF+G L P K+ +L + +
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNT------------- 49
Query: 156 LFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAA---TIRFDE 212
LF+ + + + AD + R+L D + H AA T ++
Sbjct: 50 LFSNNRPSSLGHFKNLIGFKGEVIAAD-INNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQ 108
Query: 213 ALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIE 272
L N + +L +A+ K ++ S+A Y P
Sbjct: 109 ELVMKT--NYQAFLNLLEIARSKKA--KVIYASSAGV-------YGNTKAP--------- 148
Query: 273 RVEMMSEDTVEKRAKEFLGEFPNS-YAYTKCLSEGLVVEAMNNGMPCLMLR 322
E P + Y ++K + V + +N + LR
Sbjct: 149 ----NVVGKNES---------PENVYGFSKLCMD-EFVLSHSNDNVQVGLR 185
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 30.8 bits (70), Expect = 1.3
Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 47/176 (26%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEELFASPLFNLLKS 162
+ +TGA GF+ + ++ + V I KK ++ + E F+L+
Sbjct: 30 LKISITGAGGFIASHIARRLKHEGHYV----IASDWKKNEH----MTEDMFCDEFHLVD- 80
Query: 163 VHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAAT------IRFDEALKK 216
++++ L ++ VD + + AA I+ + +
Sbjct: 81 ---LRVMENCLKVTE-------------------GVDHVFNLAADMGGMGFIQSNHS--V 116
Query: 217 AVLLNTRGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIE 272
+ NT + M+ A+ + F + S+A C +Y + T L E
Sbjct: 117 IMYNNTMISFNMIEAARINGI-KRFFYASSA-C------IYPEFKQLETTNVSLKE 164
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 30.8 bits (70), Expect = 1.4
Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 34/149 (22%)
Query: 91 NLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEE 150
NL + K + +TG +GF+G L +K++ V + +K +N +E
Sbjct: 16 NLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK-RN----VEH 70
Query: 151 LFASPLFNLLKSVHGQKIIDKVLPISGDAEADE---LAIKESDRQLLASEVDIMIHGAAT 207
F L+ H D V P+ E D+ LA AS + M + T
Sbjct: 71 WIGHENFELIN--H-----DVVEPL--YIEVDQIYHLASP-------ASPPNYMYNPIKT 114
Query: 208 IRFDEALKKAVLLNTRGTKMMLSLAKEMK 236
++ NT GT ML LAK +
Sbjct: 115 LK----------TNTIGTLNMLGLAKRVG 133
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 30.3 bits (69), Expect = 1.6
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 13/66 (19%)
Query: 263 PPTDPHKLI----ERVEMMSEDTVEKR-AKEFLGEFPNSYAYTKCLSEGLVVEAMNNGMP 317
P ++I + ++ D +EK + P + E++ +G
Sbjct: 170 KPISRIEIILNRADTNSRITSDEIEKVIGRPISKRIPQDED--------AMQESLLSGQS 221
Query: 318 CLMLRP 323
L + P
Sbjct: 222 VLKVAP 227
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.7
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 23/51 (45%)
Query: 233 KEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVE 283
+ +K L+ ++ L K Y + P I+ T+E
Sbjct: 20 QALKKLQ-----AS---------L--KLYADDSAPALAIKA-------TME 47
Score = 28.4 bits (62), Expect = 4.6
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 18/45 (40%)
Query: 145 RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKES 189
+Q +++L AS LK + D+ A LAIK +
Sbjct: 19 KQALKKLQAS-----LK------------LYADDS-APALAIKAT 45
Score = 28.0 bits (61), Expect = 5.9
Identities = 3/8 (37%), Positives = 5/8 (62%)
Query: 1 MYVPQAAP 8
+Y +AP
Sbjct: 31 LYADDSAP 38
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 30.5 bits (68), Expect = 1.8
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 460 DAIIFL-SGNKPCLVKIQD----RINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRERI 514
AIIF+ + + +V +D R+ + +F+ NN+W R V + +NK++ +
Sbjct: 242 TAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW-LRTISVILF---LNKQDLL 297
Query: 515 EYKIDGEDLDIKKYFQD 531
K+ I+ YF +
Sbjct: 298 AEKVLAGKSKIEDYFPE 314
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 30.2 bits (69), Expect = 1.9
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 199 DIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHISTAY 248
D++I+ AA D+ +KA +N + + + K ++ VHIST Y
Sbjct: 59 DVIINAAAMTDVDKCEIEKEKAYKINAEAVR---HIVRAGKVIDSYIVHISTDY 109
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 29.9 bits (68), Expect = 2.1
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 102 GKTLFMTGASGFLG----KVLLEK 121
G + +TGA+GF+ + LLE
Sbjct: 11 GSLVLVTGANGFVASHVVEQLLEH 34
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 29.9 bits (68), Expect = 2.3
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 101 TGKTLFMTGASGFLG----KVLLEK 121
KT + G +GF+ K+LL+K
Sbjct: 8 GKKTACVVGGTGFVASLLVKLLLQK 32
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 29.7 bits (67), Expect = 2.5
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 83 PVLSEEYRNLPDR-IGETFTGKTLFMTGA-SGFLGKVLLEKILRKSPNVKKIYI 134
PVL ++Y ++ + LF+ G S ++ + + +L + P + I
Sbjct: 176 PVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFPQARAHVI 229
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A
{Homo sapiens} PDB: 3bd0_A
Length = 293
Score = 29.6 bits (66), Expect = 2.6
Identities = 12/72 (16%), Positives = 27/72 (37%)
Query: 231 LAKEMKHLELFVHISTAYCHLQEKVLYEKPYPPPTDPHKLIERVEMMSEDTVEKRAKEFL 290
+K + +S+ +CH ++ Y + ++ IE ++ M +E+
Sbjct: 169 FSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSF 228
Query: 291 GEFPNSYAYTKC 302
+ Y T C
Sbjct: 229 SNYLKKYHNTIC 240
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 29.7 bits (66), Expect = 2.6
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 460 DAIIFLSGNKP-CLVKIQD----RINKGFEVFEYYANNQWEFRNEYVHVLRKIMNKRERI 514
A+IF + +D R+ + E+F++ F + +NK +
Sbjct: 208 TAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-FEKTSFML---FLNKFDIF 263
Query: 515 EYKIDGEDLDIKKYFQD 531
E K+ L++ ++F+D
Sbjct: 264 EKKVLDVPLNVCEWFRD 280
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 29.4 bits (67), Expect = 2.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 199 DIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHISTAY 248
I+IH AA + D+A A ++N G + +A + + V+IST Y
Sbjct: 58 HIIIHCAAYTKVDQAEKERDLAYVINAIGARN---VAVASQLVGAKLVYISTDY 108
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 29.5 bits (67), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Query: 102 GKTLFMTGASGFLG----KVLLEK 121
+T+ +TGASGF+G LLE+
Sbjct: 5 SETVCVTGASGFIGSWLVMRLLER 28
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 29.5 bits (67), Expect = 3.3
Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 33/148 (22%)
Query: 100 FTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMR-QKKGKNARQRIEELFASPLFN 158
F GK F+TG LGK + + I R K ++I +
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQC---VIASRKMDVLKATAEQISSQTGN---- 76
Query: 159 LLKSVHGQKIIDKVLPISGD---AEADELAIKESDRQLLASEVDIMIHGAATIRFDEALK 215
KV I D + + + E + +I+I+ AA +
Sbjct: 77 ------------KVHAIQCDVRDPDMVQNTVSELIKVA--GHPNIVINNAAGNFISPTER 122
Query: 216 ------KAVL-LNTRGT-KMMLSLAKEM 235
K + + GT + L + K++
Sbjct: 123 LSPNAWKTITDIVLNGTAFVTLEIGKQL 150
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 29.4 bits (67), Expect = 3.5
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 212 EALKKA------VLLNT-RGTKMMLSLAKEMKHLELFVHISTAYCHLQEKVLYEKPYPP 263
EA+++ V + T R M + K++ ++ FV + Y + VLY++P
Sbjct: 27 EAVRRLKQSGVYVAIATGRAPFMFEHVRKQLG-IDSFVSFNGQYVVFEGNVLYKQPLRR 84
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 29.0 bits (66), Expect = 4.6
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 199 DIMIHGAATIRFDEA---LKKAVLLNTRGTKMMLSLAKEMKHLE-LFVHISTAY 248
+++I+ AA D+ A +N G K LA + V IST Y
Sbjct: 65 NVVINCAAHTAVDKCEEQYDLAYKINAIGPKN---LAAAAYSVGAEIVQISTDY 115
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 29.0 bits (66), Expect = 5.2
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 517 KIDGEDLDIKKYFQDCIMATRIFILKEMPETLPAARRHM 555
KI+G +I + + R+ IL M + + A R +
Sbjct: 510 KIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDI 548
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 28.7 bits (64), Expect = 5.8
Identities = 8/49 (16%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 103 KTLFMTGASGFLGKVLLEKILRKSPNVKKIYILMRQKKGKNARQRIEEL 151
+ + GA+G++G+ + + L ++L+R+ + ++ + L
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPT---FLLVRESTASSNSEKAQLL 50
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 28.8 bits (65), Expect = 6.3
Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 73/245 (29%)
Query: 88 EYRNLPDRIGETFTGKTLFMTGASGFLGKVLLEKILRKSPNVKKIYI---LMRQKKGKNA 144
+ +L G G+ + +TG +GF+G +++ + K + I + L K N
Sbjct: 32 DSPDLGTGGGSGIEGRMIIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDGTKFVN- 88
Query: 145 RQRIEELFASPLFNLLKSVHGQKIIDKVLPISGDAEADELAIKESDRQLLASEVDIMIHG 204
L ++ +DK D +A +E V+ + H
Sbjct: 89 ---------------LVDLNIADYMDK-----EDFLIQIMAGEEFGD------VEAIFHE 122
Query: 205 AA---TIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHISTA--YCHLQEKVLYEK 259
A T +D K + N + +K +L E + F++ S+A Y +
Sbjct: 123 GACSSTTEWDG--KYMMDNNYQYSKELLHYCLERE--IPFLYASSAATY--------GGR 170
Query: 260 PYPPPTDPHKLIERVEMMSEDTVEKRAKEFLGEFPNS-YAYTKCLSEGLVVEAMNN-GMP 317
E P + + Y+K L + V + +
Sbjct: 171 TSDFIESREY----------------------EKPLNVFGYSKFLFDEYVRQILPEANSQ 208
Query: 318 CLMLR 322
+ R
Sbjct: 209 IVGFR 213
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 28.6 bits (65), Expect = 6.5
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 537 RIFILKEMPETLPAARRHM 555
R IL EM + + A R +
Sbjct: 546 RAHILGEMNKAMDAPRADV 564
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 28.6 bits (65), Expect = 6.8
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 537 RIFILKEMPETLPAARRHM 555
R+ IL M + + A R +
Sbjct: 536 RLHILGVMEQAINAPRGDI 554
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 28.2 bits (64), Expect = 7.1
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
Query: 194 LASE--VDIMIHGAATIRFDEALKKAVLLNTRGTKMMLSLAKEMKHLELFVHIST 246
LA+E VD I F + N GT +L + FVH+ST
Sbjct: 82 LAAESHVDRSISSPEI--F-------LHSNVIGTYTLLESIRRENPEVRFVHVST 127
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 28.3 bits (64), Expect = 8.8
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 537 RIFILKEMPETLPAARRHM 555
+ IL+ M +T+ R
Sbjct: 543 KKEILQIMNKTISKPRASR 561
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 28.1 bits (63), Expect = 9.4
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 170 DKVLPISGDAEADELAIKESDRQLLASEVDIMIHGAATIRFDEALKKAVLLNTRGTKMML 229
+ ++ S D+ I + D+ I EA K + +
Sbjct: 171 NDIVVYSADSSYIPEFIP------FTKDADLFICECNMYAHQEAAKA--GHMN--STEVA 220
Query: 230 SLAKEM--KHLELFVHISTAY 248
S+AK+ K L L H+
Sbjct: 221 SIAKDANVKEL-LLTHLPHTG 240
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 28.0 bits (63), Expect = 9.6
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 103 KTLFMTGASGFLG----KVLLEK------ILRKSPNVKKIYILMRQKKGKNAR 145
+ +TG +GFLG K LLE +R P K+ + G + +
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEK 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.422
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,816,050
Number of extensions: 626257
Number of successful extensions: 1941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1923
Number of HSP's successfully gapped: 62
Length of query: 614
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 515
Effective length of database: 3,937,614
Effective search space: 2027871210
Effective search space used: 2027871210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)