Query psy6055
Match_columns 307
No_of_seqs 135 out of 1503
Neff 4.4
Searched_HMMs 46136
Date Sat Aug 17 01:22:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0386 BtuE Glutathione perox 100.0 2.5E-47 5.4E-52 331.9 9.8 144 136-302 4-162 (162)
2 KOG1651|consensus 100.0 7.2E-46 1.6E-50 325.7 8.2 150 130-302 7-171 (171)
3 PRK10606 btuE putative glutath 100.0 1.1E-40 2.4E-45 296.2 10.6 153 142-301 8-182 (183)
4 PF00255 GSHPx: Glutathione pe 99.9 2.8E-28 6.1E-33 201.4 2.8 90 142-237 4-108 (108)
5 PTZ00056 glutathione peroxidas 99.9 6.1E-27 1.3E-31 209.2 9.6 156 132-304 10-182 (199)
6 TIGR02540 gpx7 putative glutat 99.9 2.2E-26 4.8E-31 194.7 8.6 134 142-300 5-153 (153)
7 PLN02399 phospholipid hydroper 99.9 5E-25 1.1E-29 203.3 8.9 140 141-301 81-235 (236)
8 PTZ00256 glutathione peroxidas 99.9 6.7E-25 1.5E-29 192.4 8.7 144 142-301 23-182 (183)
9 PLN02412 probable glutathione 99.9 9.3E-24 2E-28 183.0 9.9 144 139-303 9-167 (167)
10 cd00340 GSH_Peroxidase Glutath 99.8 9.2E-21 2E-25 160.5 6.9 133 142-296 5-152 (152)
11 PRK15412 thiol:disulfide inter 99.2 5.9E-12 1.3E-16 110.6 3.6 123 140-303 46-179 (185)
12 PF08534 Redoxin: Redoxin; In 99.2 2.5E-12 5.5E-17 106.6 0.9 128 141-300 8-146 (146)
13 cd03012 TlpA_like_DipZ_like Tl 99.1 8.1E-11 1.8E-15 96.3 4.6 103 146-286 9-125 (126)
14 cd03018 PRX_AhpE_like Peroxire 99.1 9.9E-11 2.1E-15 97.0 5.1 117 141-287 9-134 (149)
15 cd03017 PRX_BCP Peroxiredoxin 99.1 1.2E-10 2.6E-15 95.3 5.2 128 140-296 4-139 (140)
16 TIGR01626 ytfJ_HI0045 conserve 99.1 1.6E-10 3.4E-15 103.9 4.9 115 147-301 47-180 (184)
17 PRK03147 thiol-disulfide oxido 99.0 2.5E-10 5.4E-15 96.8 4.5 122 140-299 42-171 (173)
18 PRK09437 bcp thioredoxin-depen 99.0 4.6E-10 1E-14 94.5 5.3 128 140-293 11-146 (154)
19 PRK13728 conjugal transfer pro 99.0 2.6E-10 5.6E-15 102.4 3.7 119 138-303 52-174 (181)
20 PRK00522 tpx lipid hydroperoxi 99.0 1.2E-09 2.5E-14 94.8 6.5 123 142-298 27-164 (167)
21 TIGR00385 dsbE periplasmic pro 98.9 4.2E-10 9.2E-15 97.6 3.1 122 139-301 40-172 (173)
22 cd02969 PRX_like1 Peroxiredoxi 98.9 1.4E-09 3.1E-14 93.3 5.6 123 142-302 7-154 (171)
23 cd03015 PRX_Typ2cys Peroxiredo 98.9 1.9E-09 4E-14 93.3 4.7 130 142-300 8-157 (173)
24 PLN02919 haloacid dehalogenase 98.9 3.9E-09 8.5E-14 115.1 7.7 117 147-302 407-538 (1057)
25 cd02970 PRX_like2 Peroxiredoxi 98.8 2.5E-09 5.4E-14 87.8 3.7 133 141-285 4-148 (149)
26 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 5.1E-10 1.1E-14 89.4 -1.8 110 141-282 7-124 (124)
27 TIGR02661 MauD methylamine deh 98.8 1.4E-08 3E-13 89.9 7.0 104 139-282 52-162 (189)
28 cd03014 PRX_Atyp2cys Peroxired 98.8 8.5E-09 1.8E-13 85.4 5.1 113 141-287 8-130 (143)
29 cd02971 PRX_family Peroxiredox 98.8 1.1E-08 2.3E-13 83.6 5.1 119 141-288 4-131 (140)
30 cd03010 TlpA_like_DsbE TlpA-li 98.8 1.9E-09 4.1E-14 87.6 0.6 113 140-292 4-126 (127)
31 cd02967 mauD Methylamine utili 98.7 1.6E-08 3.5E-13 80.1 5.5 99 142-282 3-111 (114)
32 cd03011 TlpA_like_ScsD_MtbDsbE 98.7 1.9E-08 4.1E-13 80.8 5.3 115 141-295 2-121 (123)
33 PRK13190 putative peroxiredoxi 98.7 1.3E-08 2.8E-13 91.3 4.8 128 142-302 11-156 (202)
34 TIGR03137 AhpC peroxiredoxin. 98.7 2E-08 4.3E-13 88.8 5.2 114 147-289 17-141 (187)
35 cd03008 TryX_like_RdCVF Trypar 98.6 6.2E-09 1.3E-13 90.3 0.8 99 148-282 14-128 (146)
36 cd02968 SCO SCO (an acronym fo 98.6 1E-08 2.2E-13 84.1 1.6 74 141-220 4-92 (142)
37 PRK14018 trifunctional thiored 98.6 2.9E-08 6.2E-13 101.5 5.1 117 142-298 41-171 (521)
38 cd02966 TlpA_like_family TlpA- 98.6 5E-08 1.1E-12 74.3 4.7 106 142-285 2-116 (116)
39 PRK13599 putative peroxiredoxi 98.6 3.6E-08 7.9E-13 89.8 4.6 133 142-299 11-155 (215)
40 cd03016 PRX_1cys Peroxiredoxin 98.6 3.9E-08 8.4E-13 88.1 4.5 126 142-299 8-153 (203)
41 COG1225 Bcp Peroxiredoxin [Pos 98.6 6.8E-08 1.5E-12 85.2 4.6 121 142-290 13-142 (157)
42 cd02964 TryX_like_family Trypa 98.5 7.2E-08 1.6E-12 79.6 3.8 103 146-284 3-117 (132)
43 PRK13189 peroxiredoxin; Provis 98.5 1.4E-07 3E-12 86.3 4.9 132 142-301 18-164 (222)
44 PTZ00137 2-Cys peroxiredoxin; 98.5 7.9E-08 1.7E-12 90.7 2.5 133 138-299 71-224 (261)
45 PRK10382 alkyl hydroperoxide r 98.3 8.1E-07 1.8E-11 79.5 6.2 121 149-299 21-155 (187)
46 TIGR02738 TrbB type-F conjugat 98.3 1.7E-07 3.8E-12 81.5 1.9 107 148-300 43-153 (153)
47 cd03009 TryX_like_TryX_NRX Try 98.3 3.5E-07 7.6E-12 74.8 3.0 38 145-183 4-44 (131)
48 PRK13191 putative peroxiredoxi 98.3 5.4E-07 1.2E-11 82.1 4.2 132 142-299 16-160 (215)
49 PRK15000 peroxidase; Provision 98.1 2.2E-06 4.7E-11 77.2 3.0 119 151-298 25-160 (200)
50 PTZ00253 tryparedoxin peroxida 98.0 6.7E-06 1.5E-10 73.3 5.6 123 148-300 25-161 (199)
51 cd02950 TxlA TRX-like protein 97.7 4.7E-05 1E-09 64.9 4.4 40 264-303 74-113 (142)
52 COG1999 Uncharacterized protei 97.7 0.00022 4.8E-09 64.9 9.0 141 141-302 49-206 (207)
53 cd03013 PRX5_like Peroxiredoxi 97.6 3.4E-05 7.4E-10 66.5 2.5 68 148-220 17-96 (155)
54 cd02985 TRX_CDSP32 TRX family, 97.4 0.00031 6.7E-09 56.1 5.2 33 264-298 69-101 (103)
55 PF02630 SCO1-SenC: SCO1/SenC; 97.0 0.00028 6.1E-09 62.0 1.1 127 139-285 32-173 (174)
56 cd02951 SoxW SoxW family; SoxW 96.9 0.0014 3.1E-08 53.3 4.4 39 265-303 83-122 (125)
57 KOG0910|consensus 96.8 0.0011 2.4E-08 58.5 3.7 37 264-301 113-149 (150)
58 PF13905 Thioredoxin_8: Thiore 96.6 0.0016 3.5E-08 50.0 2.7 86 159-279 1-95 (95)
59 TIGR02740 TraF-like TraF-like 96.6 0.0031 6.8E-08 59.6 4.9 107 148-301 155-265 (271)
60 PRK10996 thioredoxin 2; Provis 96.1 0.0041 8.8E-08 52.7 2.8 32 268-300 108-139 (139)
61 COG0450 AhpC Peroxiredoxin [Po 96.0 0.01 2.2E-07 54.4 4.9 132 142-301 12-162 (194)
62 cd02999 PDI_a_ERp44_like PDIa 96.0 0.0056 1.2E-07 48.9 2.8 27 155-182 14-43 (100)
63 cd02948 TRX_NDPK TRX domain, T 95.6 0.0058 1.2E-07 48.6 1.5 34 264-299 69-102 (102)
64 KOG2792|consensus 95.5 0.031 6.6E-07 53.6 6.2 137 141-301 121-276 (280)
65 cd02963 TRX_DnaJ TRX domain, D 95.3 0.029 6.3E-07 45.4 4.7 35 264-299 77-111 (111)
66 cd02953 DsbDgamma DsbD gamma f 95.3 0.018 3.9E-07 45.2 3.4 34 264-297 70-104 (104)
67 PRK00293 dipZ thiol:disulfide 95.2 0.014 3E-07 60.6 3.2 37 264-300 532-570 (571)
68 PRK09381 trxA thioredoxin; Pro 95.1 0.039 8.5E-07 43.6 4.7 33 268-301 77-109 (109)
69 cd02956 ybbN ybbN protein fami 94.9 0.04 8.8E-07 42.3 4.3 28 268-296 68-95 (96)
70 cd02958 UAS UAS family; UAS is 94.9 0.034 7.3E-07 44.9 4.0 35 267-301 77-112 (114)
71 TIGR01126 pdi_dom protein disu 94.2 0.028 6E-07 42.9 1.8 35 264-299 67-101 (102)
72 cd02994 PDI_a_TMX PDIa family, 92.2 0.2 4.3E-06 38.9 3.9 33 147-182 6-41 (101)
73 cd03000 PDI_a_TMX3 PDIa family 92.2 0.083 1.8E-06 41.6 1.8 29 268-298 74-102 (104)
74 PHA02278 thioredoxin-like prot 91.7 0.44 9.5E-06 38.8 5.5 31 263-294 69-99 (103)
75 cd02997 PDI_a_PDIR PDIa family 91.6 0.074 1.6E-06 40.9 0.8 27 268-295 77-103 (104)
76 cd02949 TRX_NTR TRX domain, no 91.0 0.36 7.8E-06 37.6 4.2 28 268-296 69-96 (97)
77 cd02959 ERp19 Endoplasmic reti 90.8 0.07 1.5E-06 44.1 0.0 27 151-178 11-40 (117)
78 TIGR01068 thioredoxin thioredo 90.3 0.91 2E-05 34.2 5.8 36 264-300 66-101 (101)
79 KOG0907|consensus 89.6 0.55 1.2E-05 38.8 4.4 27 271-298 78-104 (106)
80 PTZ00102 disulphide isomerase; 89.5 0.58 1.2E-05 46.1 5.1 39 264-302 429-467 (477)
81 KOG0855|consensus 89.4 1.7 3.7E-05 39.9 7.7 161 94-300 27-209 (211)
82 cd02960 AGR Anterior Gradient 89.0 0.68 1.5E-05 39.9 4.6 18 268-285 81-98 (130)
83 PF13098 Thioredoxin_2: Thiore 88.8 0.48 1E-05 37.2 3.3 33 263-295 79-111 (112)
84 cd02993 PDI_a_APS_reductase PD 87.9 0.28 6E-06 39.3 1.4 22 158-180 20-44 (109)
85 cd03003 PDI_a_ERdj5_N PDIa fam 87.7 0.6 1.3E-05 36.4 3.2 34 147-181 6-42 (101)
86 cd03005 PDI_a_ERp46 PDIa famil 87.6 0.57 1.2E-05 35.9 3.0 31 264-295 71-101 (102)
87 KOG2501|consensus 87.3 0.27 5.8E-06 43.9 1.1 37 146-182 19-58 (157)
88 PTZ00443 Thioredoxin domain-co 87.1 1.2 2.6E-05 41.4 5.4 37 266-303 106-142 (224)
89 cd03004 PDI_a_ERdj5_C PDIa fam 87.0 0.56 1.2E-05 36.5 2.7 28 268-295 75-103 (104)
90 PLN00410 U5 snRNP protein, DIM 86.9 1.4 3.1E-05 38.4 5.4 36 268-303 79-123 (142)
91 PF04592 SelP_N: Selenoprotein 85.3 0.63 1.4E-05 44.1 2.6 118 147-300 15-146 (238)
92 PF13778 DUF4174: Domain of un 84.2 0.95 2.1E-05 37.8 2.9 37 267-303 79-115 (118)
93 smart00594 UAS UAS domain. 84.1 0.72 1.6E-05 38.1 2.1 29 268-296 88-121 (122)
94 cd02954 DIM1 Dim1 family; Dim1 83.7 1.4 3.1E-05 37.1 3.7 28 264-292 66-93 (114)
95 PF00085 Thioredoxin: Thioredo 83.6 0.7 1.5E-05 35.0 1.8 30 268-298 73-102 (103)
96 TIGR00411 redox_disulf_1 small 83.2 1.5 3.2E-05 32.4 3.3 28 268-300 55-82 (82)
97 COG3118 Thioredoxin domain-con 83.1 0.97 2.1E-05 44.3 2.8 41 264-305 95-135 (304)
98 cd03065 PDI_b_Calsequestrin_N 82.8 1.2 2.6E-05 37.5 3.0 31 268-300 89-119 (120)
99 cd03002 PDI_a_MPD1_like PDI fa 82.6 3 6.4E-05 32.4 5.0 33 264-296 72-108 (109)
100 cd02955 SSP411 TRX domain, SSP 81.8 2.6 5.7E-05 35.6 4.7 19 266-284 80-98 (124)
101 cd02961 PDI_a_family Protein D 80.7 1.9 4E-05 31.9 3.1 28 268-295 73-100 (101)
102 PTZ00051 thioredoxin; Provisio 79.7 1.3 2.8E-05 33.9 2.0 24 268-293 73-96 (98)
103 cd02975 PfPDO_like_N Pyrococcu 77.9 2.5 5.4E-05 34.4 3.2 38 264-302 73-112 (113)
104 TIGR01295 PedC_BrcD bacterioci 77.1 2.6 5.6E-05 35.1 3.2 22 264-286 88-109 (122)
105 cd02998 PDI_a_ERp38 PDIa famil 73.9 3.9 8.5E-05 31.1 3.2 28 268-295 77-104 (105)
106 COG0526 TrxA Thiol-disulfide i 73.0 2.6 5.6E-05 30.6 1.9 32 151-182 24-57 (127)
107 cd02984 TRX_PICOT TRX domain, 68.6 4.2 9.1E-05 30.9 2.3 27 268-296 70-96 (97)
108 cd03001 PDI_a_P5 PDIa family, 67.6 6.8 0.00015 29.9 3.3 29 268-296 74-102 (103)
109 PLN02309 5'-adenylylsulfate re 66.3 5.2 0.00011 41.1 3.1 23 158-180 364-388 (457)
110 TIGR01130 ER_PDI_fam protein d 65.5 10 0.00022 36.7 4.8 36 265-301 74-110 (462)
111 PF00837 T4_deiodinase: Iodoth 65.4 6.2 0.00013 37.5 3.2 36 144-179 84-124 (237)
112 PTZ00102 disulphide isomerase; 63.8 4.7 0.0001 39.7 2.2 36 264-301 104-139 (477)
113 PRK11509 hydrogenase-1 operon 63.4 8.4 0.00018 33.4 3.4 37 271-307 95-131 (132)
114 KOG0908|consensus 59.6 13 0.00029 36.1 4.3 31 271-302 78-108 (288)
115 PTZ00062 glutaredoxin; Provisi 58.0 22 0.00047 32.8 5.3 29 271-300 66-94 (204)
116 cd02995 PDI_a_PDI_a'_C PDIa fa 56.8 2.9 6.3E-05 31.8 -0.5 22 159-181 18-42 (104)
117 PF11211 DUF2997: Protein of u 53.8 20 0.00044 25.9 3.5 37 270-306 2-40 (48)
118 PF14595 Thioredoxin_9: Thiore 48.7 3.5 7.6E-05 35.0 -1.3 20 268-287 99-118 (129)
119 KOG0852|consensus 48.4 17 0.00037 33.6 2.9 20 146-165 18-39 (196)
120 cd03006 PDI_a_EFP1_N PDIa fami 47.6 11 0.00023 31.2 1.4 20 275-294 92-111 (113)
121 cd02987 Phd_like_Phd Phosducin 45.5 43 0.00094 29.6 5.0 35 267-302 136-173 (175)
122 cd02962 TMX2 TMX2 family; comp 44.9 7.1 0.00015 34.1 -0.0 45 137-182 23-72 (152)
123 PF09695 YtfJ_HI0045: Bacteria 44.5 30 0.00065 31.2 3.8 30 269-298 127-156 (160)
124 cd02989 Phd_like_TxnDC9 Phosdu 42.8 78 0.0017 25.7 5.8 36 264-300 73-112 (113)
125 PF05176 ATP-synt_10: ATP10 pr 40.4 29 0.00062 33.0 3.3 28 270-297 220-247 (252)
126 TIGR01130 ER_PDI_fam protein d 38.1 48 0.001 32.1 4.5 37 264-300 417-454 (462)
127 PF13728 TraF: F plasmid trans 37.6 23 0.00049 32.6 2.1 42 149-192 110-153 (215)
128 TIGR02187 GlrX_arch Glutaredox 37.2 33 0.00071 30.9 3.0 26 268-297 188-213 (215)
129 TIGR00424 APS_reduc 5'-adenyly 37.0 79 0.0017 32.8 6.0 24 157-180 369-394 (463)
130 KOG0190|consensus 36.0 42 0.00092 35.1 3.9 123 143-290 26-167 (493)
131 cd02996 PDI_a_ERp44 PDIa famil 34.8 9.7 0.00021 29.9 -0.7 23 159-182 18-43 (108)
132 TIGR01352 tonB_Cterm TonB fami 33.7 63 0.0014 23.4 3.6 34 269-302 14-48 (74)
133 cd02992 PDI_a_QSOX PDIa family 33.7 9.6 0.00021 31.0 -0.9 21 160-181 20-43 (114)
134 PF03544 TonB_C: Gram-negative 33.5 31 0.00068 25.3 1.9 34 269-302 20-54 (79)
135 cd02952 TRP14_like Human TRX-r 32.3 25 0.00055 29.6 1.4 26 157-182 19-53 (119)
136 PF02563 Poly_export: Polysacc 30.2 39 0.00084 26.1 2.0 33 270-302 32-69 (82)
137 PF13103 TonB_2: TonB C termin 27.6 86 0.0019 23.6 3.5 34 269-302 30-64 (85)
138 cd02991 UAS_ETEA UAS family, E 26.5 1.1E+02 0.0024 25.4 4.2 29 274-302 87-115 (116)
139 KOG2507|consensus 24.3 96 0.0021 32.4 4.1 34 268-301 79-112 (506)
140 cd02947 TRX_family TRX family; 23.9 70 0.0015 22.6 2.3 28 268-296 65-92 (93)
141 PF07411 DUF1508: Domain of un 23.3 98 0.0021 22.1 2.9 32 272-303 10-41 (49)
142 cd02986 DLP Dim1 family, Dim1- 22.3 37 0.0008 28.8 0.6 29 158-187 13-45 (114)
143 PF05228 CHASE4: CHASE4 domain 22.1 1.1E+02 0.0023 25.4 3.4 39 264-303 48-91 (161)
144 TIGR02187 GlrX_arch Glutaredox 20.6 1.5E+02 0.0032 26.6 4.2 38 263-301 74-112 (215)
No 1
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-47 Score=331.92 Aligned_cols=144 Identities=22% Similarity=0.275 Sum_probs=129.3
Q ss_pred CCCCCCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhh-------------hhcccCCCCCccCCChhhhc
Q psy6055 136 STSASPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSAN-------------VVDPISGRGYKLRRYKGKVL 200 (307)
Q Consensus 136 s~~~~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~-------------llfPcnQFG~QEpgs~~EI~ 200 (307)
++|+ +..+.+||+.++|++|||||+|||| |.||+|.||- +|+ +.||||||+.|||++++||+
T Consensus 4 ~~yd--~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 4 SIYD--FSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQYE-GLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred cccc--ceeeccCCCCccHHHhCCcEEEEEEcccccCCcHhHH-HHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 4555 5566899999999999999999999 9999999875 443 23799999999999999999
Q ss_pred cccceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEE
Q psy6055 201 LIVHFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPV 280 (307)
Q Consensus 201 ~~l~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV 280 (307)
+||+ .+|+++||||+||+|||+++||||+||+.+.+. .++ .++|+||||||||||+|+||
T Consensus 81 ---~fC~--~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g---~~~------------~~~IkWNFtKFLvdr~G~VV 140 (162)
T COG0386 81 ---KFCQ--LNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPG---KLG------------GKDIKWNFTKFLVDRDGNVV 140 (162)
T ss_pred ---HHHH--hccCceeeeeeEEeecCCCCCcHHHHHHhcCCC---Ccc------------CCccceeeEEEEEcCCCcEE
Confidence 6999 899999999999999999999999999999874 222 35899999999999999999
Q ss_pred EEecCCCCcccHHHHHHHHhhh
Q psy6055 281 ARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 281 ~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
+||.|.++|++++.+|++||++
T Consensus 141 ~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 141 KRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred EeeCCCCChhhHHHHHHHHhcC
Confidence 9999999999999999999974
No 2
>KOG1651|consensus
Probab=100.00 E-value=7.2e-46 Score=325.67 Aligned_cols=150 Identities=22% Similarity=0.299 Sum_probs=134.5
Q ss_pred cCCCCCCCCCCCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhh-------------hhcccCCCCCccCC
Q psy6055 130 CGGRSQSTSASPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSAN-------------VVDPISGRGYKLRR 194 (307)
Q Consensus 130 ~~~~~~s~~~~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~-------------llfPcnQFG~QEpg 194 (307)
|....+|+|+ ++..+++|+.++|++|||||+|||| |.||+|.+.+.+|+ ++|||||||.|||+
T Consensus 7 ~~~~~~siyd--f~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~ 84 (171)
T KOG1651|consen 7 HADEKGSIYD--FSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPG 84 (171)
T ss_pred hhhhhcceee--eEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCC
Confidence 4556777777 5556799999999999999999999 99999997776664 35899999999999
Q ss_pred ChhhhccccceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEEC
Q psy6055 195 YKGKVLLIVHFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVG 274 (307)
Q Consensus 195 s~~EI~~~l~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLID 274 (307)
+++||. .|+. .+|++.||||+||||||+++||||+|||.+.+. .+|. +|+|||+|||||
T Consensus 85 ~n~Ei~---~f~~--~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~---~lg~-------------~IkWNF~KFLVd 143 (171)
T KOG1651|consen 85 SNEEIL---NFVK--VRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGG---PLGD-------------DIKWNFTKFLVD 143 (171)
T ss_pred CcHHHH---HHHH--hccCCCCccEeEEecCCCCCchHHHHHhhcCCC---cccc-------------cceeeeEEEeEC
Confidence 999999 5887 799999999999999999999999999999863 4542 899999999999
Q ss_pred CCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 275 ARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 275 rdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|||+||+||.|.++|.+++.+|++||++
T Consensus 144 ~~G~vv~Ry~ptt~p~~~~~dIe~lL~~ 171 (171)
T KOG1651|consen 144 KDGHVVKRFSPTTSPLDIEKDIEKLLAQ 171 (171)
T ss_pred CCCcEEEeeCCCCCccccchhHHHHhcC
Confidence 9999999999999999999999999964
No 3
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=100.00 E-value=1.1e-40 Score=296.18 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=132.8
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhh-------------hcccCCCCCccCCChhhhcccccee
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANV-------------VDPISGRGYKLRRYKGKVLLIVHFR 206 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~l-------------lfPcnQFG~QEpgs~~EI~~~l~F~ 206 (307)
+++.+++|+.++|++|+|||+|||| |||++|. +|+.|+. .+||||||.||++++++|+ +|+
T Consensus 8 f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~---~f~ 83 (183)
T PRK10606 8 TVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIK---TYC 83 (183)
T ss_pred cEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHH---HHH
Confidence 4556799999999999999999999 9999996 5777752 3599999999999999999 699
Q ss_pred ecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCc-----cCCCccccccCCCCCCCCCCcccceEEEECCCCcEEE
Q psy6055 207 VSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTR-----IGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVA 281 (307)
Q Consensus 207 ~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~-----g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~ 281 (307)
+ .+|+++|||++|+||||+++||||+|||++++... +++.. +..++|+|...++|+|||+|||||++|+||+
T Consensus 84 ~--~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~ 160 (183)
T PRK10606 84 R--TTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYAR-MVSKGRAPLYPDDILWNFEKFLVGRDGQVIQ 160 (183)
T ss_pred H--HccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhh-hhccccccccCCcccccCEEEEECCCCcEEE
Confidence 5 47999999999999999999999999999886311 11221 2456788999999999999999999999999
Q ss_pred EecCCCCccc--HHHHHHHHhh
Q psy6055 282 RYDASVEPSE--LEPDIVEELM 301 (307)
Q Consensus 282 Ry~p~~~P~e--Le~dIekLL~ 301 (307)
||.|.+.|++ |+++|+++|+
T Consensus 161 r~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 161 RFSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred EECCCCCCCHHHHHHHHHHHhc
Confidence 9999999997 9999999995
No 4
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.94 E-value=2.8e-28 Score=201.45 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=78.2
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhh-------------hhcccCCCCCccCCChhhhcccccee
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSAN-------------VVDPISGRGYKLRRYKGKVLLIVHFR 206 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~-------------llfPcnQFG~QEpgs~~EI~~~l~F~ 206 (307)
++..++||+.++|++|||||+|||| |.||++. .+.+|+ ++|||||||.|||++++||+ +|+
T Consensus 4 f~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~---~~~ 79 (108)
T PF00255_consen 4 FSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIK---EFC 79 (108)
T ss_dssp SEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHH---HHH
T ss_pred eeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHH---HHH
Confidence 4455799999999999999999999 9999999 555554 34799999999999999999 699
Q ss_pred ecCCCCCccceeecccCCCCCCCChhHHHHH
Q psy6055 207 VSGKGFVPKFDVFGPGPVNGASEAPLFTYLK 237 (307)
Q Consensus 207 ~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK 237 (307)
. .+|+++||||+|++|||+++||||+|||
T Consensus 80 ~--~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 80 K--EKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp C--HCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred H--hccCCcccceEEEEecCCCCcHHHHHhC
Confidence 7 5699999999999999999999999997
No 5
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.94 E-value=6.1e-27 Score=209.21 Aligned_cols=156 Identities=22% Similarity=0.204 Sum_probs=124.9
Q ss_pred CCCCCCCCCCCCcc--cCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhh-------------cccCCCCCccCC
Q psy6055 132 GRSQSTSASPENSG--IGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVV-------------DPISGRGYKLRR 194 (307)
Q Consensus 132 ~~~~s~~~~~~~ft--~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~ll-------------fPcnQFG~QEpg 194 (307)
.+.+......++|+ +++|+.++|++|+||++||.+ |||++|.+++|.|+.+ ++++||+.++.+
T Consensus 10 ~~~~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d 89 (199)
T PTZ00056 10 VSKDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFP 89 (199)
T ss_pred ccchhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCC
Confidence 33443433445554 589999999999999887655 9999999999988643 266777777767
Q ss_pred ChhhhccccceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEEC
Q psy6055 195 YKGKVLLIVHFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVG 274 (307)
Q Consensus 195 s~~EI~~~l~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLID 274 (307)
+.++++ +|++ +++++||++.+++|+|.++||+|++|+.+... .++. . .....|.|||++||||
T Consensus 90 ~~e~~~---~f~~---~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~---~~d~-------~-~~~~~i~~~~~tflID 152 (199)
T PTZ00056 90 NTKDIR---KFND---KNKIKYNFFEPIEVNGENTHELFKFLKANCDS---MHDE-------N-GTLKAIGWNFGKFLVN 152 (199)
T ss_pred CHHHHH---HHHH---HcCCCceeeeeeeccCCccCHHHHHHHHhCcc---cccc-------c-ccCCccCCCCEEEEEC
Confidence 778888 6984 89999999999999999999999999987653 2210 0 1123588999999999
Q ss_pred CCCcEEEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 275 ARGYPVARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 275 rdG~VV~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
++|+|+++|.+..++++|+++|++||++..
T Consensus 153 ~~G~iv~~~~g~~~~~~l~~~I~~ll~~~~ 182 (199)
T PTZ00056 153 KSGNVVAYFSPRTEPLELEKKIAELLGVKD 182 (199)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998754
No 6
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.93 E-value=2.2e-26 Score=194.71 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=115.4
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhh-------------cccCCCCCccCCChhhhcccccee
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVV-------------DPISGRGYKLRRYKGKVLLIVHFR 206 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~ll-------------fPcnQFG~QEpgs~~EI~~~l~F~ 206 (307)
+++.+++|++++|++|+||++||+| |||++|.++||.|+.+ ++++++|.++.++.++++ +|+
T Consensus 5 f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~---~f~ 81 (153)
T TIGR02540 5 FEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE---SFA 81 (153)
T ss_pred ceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH---HHH
Confidence 4445689999999999999988777 9999999999977533 367888888878888888 698
Q ss_pred ecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC
Q psy6055 207 VSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 207 ~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
+ .+++++||++.+++|+|...++.|+|+..... ..+.|||++||||++|+|+.+|.+.
T Consensus 82 ~--~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~--------------------~~p~~~~~tflID~~G~v~~~~~g~ 139 (153)
T TIGR02540 82 R--RNYGVTFPMFSKIKILGSEAEPAFRFLVDSSK--------------------KEPRWNFWKYLVNPEGQVVKFWRPE 139 (153)
T ss_pred H--HhcCCCCCccceEecCCCCCCcHHHHHHhcCC--------------------CCCCCccEEEEEcCCCcEEEEECCC
Confidence 5 34899999999999999999999999986532 1478999999999999999999999
Q ss_pred CCcccHHHHHHHHh
Q psy6055 287 VEPSELEPDIVEEL 300 (307)
Q Consensus 287 ~~P~eLe~dIekLL 300 (307)
.++++|+++|++||
T Consensus 140 ~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 140 EPVEEIRPEITALV 153 (153)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999999886
No 7
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.91 E-value=5e-25 Score=203.31 Aligned_cols=140 Identities=23% Similarity=0.294 Sum_probs=118.1
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhh-------------cccCCCCCccCCChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVV-------------DPISGRGYKLRRYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~ll-------------fPcnQFG~QEpgs~~EI~~~l~F 205 (307)
++.+.+++|+.++|++|+||++||++ +||++|..++|.|+.+ ..+++++.|+.++.++++ +|
T Consensus 81 dF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~---~f 157 (236)
T PLN02399 81 DFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK---QF 157 (236)
T ss_pred ceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHH---HH
Confidence 34445689999999999999888666 9999999999988643 266677667777778888 68
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
+. .+++++|||+.+.|++|..++|+|++|+...+. ..| ..|+|||++||||++|+|+++|.+
T Consensus 158 ~~--~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~---~~g-------------~~i~~~PttfLIDk~GkVv~~~~G 219 (236)
T PLN02399 158 AC--TRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGG---FLG-------------DLIKWNFEKFLVDKNGKVVERYPP 219 (236)
T ss_pred HH--HhcCCCCccccccCCCcchhhHHHHHHHHhcCC---ccC-------------CccccCceEEEECCCCcEEEEECC
Confidence 74 479999999999999999999999999876642 223 268999999999999999999999
Q ss_pred CCCcccHHHHHHHHhh
Q psy6055 286 SVEPSELEPDIVEELM 301 (307)
Q Consensus 286 ~~~P~eLe~dIekLL~ 301 (307)
.+++++|+++|+++|+
T Consensus 220 ~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 220 TTSPFQIEKDIQKLLA 235 (236)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999996
No 8
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.91 E-value=6.7e-25 Score=192.37 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=115.9
Q ss_pred CCcccCCCCcccCCCCCCCe-EEEEc--CCCCCCcCcchhhhhhc-------------ccCCCCCccCCChhhhccccce
Q psy6055 142 ENSGIGGPDRIDGSRLRGPS-HRSVG--TDHIVVPSRLPSANVVD-------------PISGRGYKLRRYKGKVLLIVHF 205 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKV-vLVVN--S~Cg~c~qe~p~L~llf-------------PcnQFG~QEpgs~~EI~~~l~F 205 (307)
+++++++|+.++|++|+||+ +|++| |||++|.++||.|+.++ ++++++.+++.+.++++ +|
T Consensus 23 f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~---~f 99 (183)
T PTZ00256 23 FEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIK---EY 99 (183)
T ss_pred eEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHH---HH
Confidence 34446899999999999995 46688 99999999999987432 45555555555667777 58
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
+. .+++++|||+.+++++|..++++|+||+.+.+. ++ +.......|.|||++||||++|+|+++|.+
T Consensus 100 ~~--~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~----~~-------~~~~~~~~iP~~~~tflID~~G~Iv~~~~g 166 (183)
T PTZ00256 100 VQ--KKFNVDFPLFQKIEVNGENTHEIYKYLRRNSEL----FQ-------NNTNEARQIPWNFAKFLIDGQGKVVKYFSP 166 (183)
T ss_pred HH--HhcCCCCCCceEEecCCCCCCHHHHHHHhhCCC----Cc-------CccccCcccCcceEEEEECCCCCEEEEECC
Confidence 74 478999999988999999999999999998752 21 111122368999999999999999999999
Q ss_pred CCCcccHHHHHHHHhh
Q psy6055 286 SVEPSELEPDIVEELM 301 (307)
Q Consensus 286 ~~~P~eLe~dIekLL~ 301 (307)
..+++++++.|+++|+
T Consensus 167 ~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 167 KVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999986
No 9
>PLN02412 probable glutathione peroxidase
Probab=99.90 E-value=9.3e-24 Score=182.98 Aligned_cols=144 Identities=23% Similarity=0.304 Sum_probs=115.8
Q ss_pred CCCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCC------------ccCCChhhhcccc
Q psy6055 139 ASPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGY------------KLRRYKGKVLLIV 203 (307)
Q Consensus 139 ~~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~------------QEpgs~~EI~~~l 203 (307)
...+++..++|+.++|++|+||++||++ +||++|.+++|.|+.++ .+.+.|+ ++..+.+++++
T Consensus 9 ~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~-- 86 (167)
T PLN02412 9 IYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQ-- 86 (167)
T ss_pred CCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHH--
Confidence 3335555689999999999999877655 99999999999987543 3444444 44455667763
Q ss_pred ceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 204 HFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 204 ~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
.|+ .+++++|||+.++|++|..++++|++|+..... .++ ..|.|||++||||++|+|+++|
T Consensus 87 ~~~---~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~---~~~-------------~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 87 TVC---TRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGG---LFG-------------DAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred HHH---HccCCCCceEeEEeeCCCCCCHHHHHHHhhCCC---CCC-------------CCcCCCCeeEEECCCCcEEEEE
Confidence 344 589999999988999999999999999986532 222 2689999999999999999999
Q ss_pred cCCCCcccHHHHHHHHhhhh
Q psy6055 284 DASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~~ 303 (307)
.+..++++|+++|+++|+++
T Consensus 148 ~g~~~~~~l~~~i~~~l~~~ 167 (167)
T PLN02412 148 APTTSPLKIEKDIQNLLGQA 167 (167)
T ss_pred CCCCCHHHHHHHHHHHHhhC
Confidence 99999999999999999863
No 10
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.82 E-value=9.2e-21 Score=160.52 Aligned_cols=133 Identities=23% Similarity=0.357 Sum_probs=104.7
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCcc------------CCChhhhcccccee
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKL------------RRYKGKVLLIVHFR 206 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QE------------pgs~~EI~~~l~F~ 206 (307)
+++++++|+.++|++|+||++||.. +||+ |.+++|.|+.++ .+.+.|++. .++.++++ +|+
T Consensus 5 f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~---~f~ 80 (152)
T cd00340 5 FSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIK---EFC 80 (152)
T ss_pred eEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHH---HHH
Confidence 4555689999999999999877444 9999 999999997554 455555543 23446677 698
Q ss_pred ecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC
Q psy6055 207 VSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 207 ~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
+ +.++++||++.+.|++|...+++|+++....+. .. ...++|||++||||++|+|+++|.+.
T Consensus 81 ~--~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~---~~-------------~~~~~~~~ttflId~~G~i~~~~~G~ 142 (152)
T cd00340 81 E--TNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPG---LL-------------GKDIKWNFTKFLVDRDGEVVKRFAPT 142 (152)
T ss_pred H--HhcCCCceeeeeEeccCCCCChHHHHHHhcCCC---CC-------------CCccccccEEEEECCCCcEEEEECCC
Confidence 5 338999999987788998888999988876652 11 13789999999999999999999999
Q ss_pred CCcccHHHHH
Q psy6055 287 VEPSELEPDI 296 (307)
Q Consensus 287 ~~P~eLe~dI 296 (307)
.++++|+++|
T Consensus 143 ~~~~~l~~~i 152 (152)
T cd00340 143 TDPEELEKDI 152 (152)
T ss_pred CCHHHHHhcC
Confidence 9998887765
No 11
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.22 E-value=5.9e-12 Score=110.64 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=84.8
Q ss_pred CCCCcccCC--CCcccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhcccCCCCCccC-----CChhhhccccceeec
Q psy6055 140 SPENSGIGG--PDRIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVDPISGRGYKLR-----RYKGKVLLIVHFRVS 208 (307)
Q Consensus 140 ~~~~ft~ld--G~~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llfPcnQFG~QEp-----gs~~EI~~~l~F~~p 208 (307)
+++++.+++ |+.++++++ +||++| || +||++|.+++|.|+.+.. .|++.. .+.++++ +|+.
T Consensus 46 p~f~l~~~~g~g~~~~~~~~~~gk~vv-v~FwatwC~~C~~e~p~l~~l~~---~~~~vi~v~~~~~~~~~~---~~~~- 117 (185)
T PRK15412 46 PKFRLESLENPGQFYQADVLTQGKPVL-LNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAI---SWLK- 117 (185)
T ss_pred CCcCCccCCCCCccccHHHhcCCCEEE-EEEECCCCHHHHHHHHHHHHHHH---cCCEEEEEECCCCHHHHH---HHHH-
Confidence 344455576 577888776 899866 77 999999999999876632 244432 2234566 6884
Q ss_pred CCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCC
Q psy6055 209 GKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVE 288 (307)
Q Consensus 209 g~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~ 288 (307)
+++.+||+.- .|-++. +... || |.--++.||||++|+|++++.+..+
T Consensus 118 --~~~~~~~~~~-~D~~~~--------~~~~-------~g---------------v~~~P~t~vid~~G~i~~~~~G~~~ 164 (185)
T PRK15412 118 --ELGNPYALSL-FDGDGM--------LGLD-------LG---------------VYGAPETFLIDGNGIIRYRHAGDLN 164 (185)
T ss_pred --HcCCCCceEE-EcCCcc--------HHHh-------cC---------------CCcCCeEEEECCCceEEEEEecCCC
Confidence 7888998631 121111 1111 11 2223689999999999999999999
Q ss_pred cccHHHHHHHHhhhh
Q psy6055 289 PSELEPDIVEELMKR 303 (307)
Q Consensus 289 P~eLe~dIekLL~~~ 303 (307)
.+++++.|+++|++.
T Consensus 165 ~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 165 PRVWESEIKPLWEKY 179 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999754
No 12
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.21 E-value=2.5e-12 Score=106.60 Aligned_cols=128 Identities=17% Similarity=0.075 Sum_probs=85.1
Q ss_pred CCCccc--CCCCcccCCCCCCCeEEEEc---C-CCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecC
Q psy6055 141 PENSGI--GGPDRIDGSRLRGPSHRSVG---T-DHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSG 209 (307)
Q Consensus 141 ~~~ft~--ldG~~vdLS~yKGKVvLVVN---S-~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg 209 (307)
.+++++ .+|++++|++++||++| || + ||++|..++|.|+.++ .+.+.+++.. .++..+. +|+.
T Consensus 8 ~~~~~~~~~~g~~~~l~~~~gk~~v-v~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~---~~~~-- 81 (146)
T PF08534_consen 8 DFSLKDLDLDGKPVSLSDFKGKPVV-VNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVR---EFLK-- 81 (146)
T ss_dssp CCEEEEEETTSEEEEGGGGTTSEEE-EEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHH---HHHH--
T ss_pred CeEEEeecCCCCEecHHHhCCCeEE-EEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHH---HHHH--
Confidence 344544 89999999999999866 56 8 9999999999887654 4566666653 3344466 6885
Q ss_pred CCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCc
Q psy6055 210 KGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEP 289 (307)
Q Consensus 210 ~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P 289 (307)
+++.+||++. | ....+.+.+.... ....... ..-++.||||++|+|++++.+..+.
T Consensus 82 -~~~~~~~~~~--D----~~~~~~~~~~~~~----------------~~~~~~~-~~~P~~~lId~~G~V~~~~~g~~~~ 137 (146)
T PF08534_consen 82 -KYGINFPVLS--D----PDGALAKALGVTI----------------MEDPGNG-FGIPTTFLIDKDGKVVYRHVGPDPD 137 (146)
T ss_dssp -HTTTTSEEEE--E----TTSHHHHHTTCEE----------------ECCTTTT-SSSSEEEEEETTSBEEEEEESSBTT
T ss_pred -hhCCCceEEe--c----hHHHHHHHhCCcc----------------ccccccC-CeecEEEEEECCCEEEEEEeCCCCC
Confidence 6999999983 3 2223333322110 0000000 2456889999999999999888873
Q ss_pred ccHHHHHHHHh
Q psy6055 290 SELEPDIVEEL 300 (307)
Q Consensus 290 ~eLe~dIekLL 300 (307)
-+++++++|
T Consensus 138 --~~~~~~~~l 146 (146)
T PF08534_consen 138 --EESDLEAVL 146 (146)
T ss_dssp --SHHSHHHHH
T ss_pred --CCCChhhcC
Confidence 455666554
No 13
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.10 E-value=8.1e-11 Score=96.31 Aligned_cols=103 Identities=11% Similarity=-0.022 Sum_probs=72.5
Q ss_pred cCCC-CcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccCC----------ChhhhccccceeecCCC
Q psy6055 146 IGGP-DRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLRR----------YKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 146 ~ldG-~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----------s~~EI~~~l~F~~pg~~ 211 (307)
.+++ +.++|++++||++||.- +||++|..++|.|+.++ .+.+.+++..+ +.++++ +|++ +
T Consensus 9 w~~~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~---~~~~---~ 82 (126)
T cd03012 9 WLNTDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVK---SAVL---R 82 (126)
T ss_pred hhcCCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHH---HHHH---H
Confidence 4554 78999999999877444 89999999999997654 56665665431 245566 6884 8
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
++++||++. |- ...+++. |+ +..-++.||||++|+|++++.+.
T Consensus 83 ~~~~~p~~~--D~----~~~~~~~-----------~~---------------v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 83 YGITYPVAN--DN----DYATWRA-----------YG---------------NQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred cCCCCCEEE--CC----chHHHHH-----------hC---------------CCcCCeEEEECCCCcEEEEEecC
Confidence 999999984 32 1222221 11 22336889999999999998764
No 14
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.10 E-value=9.9e-11 Score=96.97 Aligned_cols=117 Identities=11% Similarity=-0.032 Sum_probs=76.8
Q ss_pred CCCcccCCCCcccCCCCCC-CeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecCCC
Q psy6055 141 PENSGIGGPDRIDGSRLRG-PSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKG-KVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg~~ 211 (307)
++.+..++|+.++|++++| |++||+. +||+.|..++|.|+.++ .+.+.+.+..+ +.++++ +|++ +
T Consensus 9 ~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~---~~~~---~ 82 (149)
T cd03018 9 DFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR---AWAE---E 82 (149)
T ss_pred CcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH---HHHH---h
Confidence 3455668999999999999 8877666 79999999999987654 44445566532 334555 6884 7
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV 287 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~ 287 (307)
++++||++. |-+ ...-+.+.+.. ... + ..+ ...+.||||++|+|++++.+..
T Consensus 83 ~~~~~~~~~--D~~--~~~~~~~~~g~--------~~~--------~---~~~-~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 83 NGLTFPLLS--DFW--PHGEVAKAYGV--------FDE--------D---LGV-AERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCceEec--CCC--chhHHHHHhCC--------ccc--------c---CCC-ccceEEEECCCCEEEEEEecCC
Confidence 889999984 221 00112222111 100 0 011 1346799999999999998876
No 15
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.09 E-value=1.2e-10 Score=95.31 Aligned_cols=128 Identities=13% Similarity=0.031 Sum_probs=83.1
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~ 211 (307)
.++.+.+++|+.++|++++||++||.- +||+.|..+++.|+.++ .+.+.+.+.. ++.++++ +|+. .
T Consensus 4 p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~---~~~~---~ 77 (140)
T cd03017 4 PDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHA---KFAE---K 77 (140)
T ss_pred CCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH---HHHH---H
Confidence 345556789999999999999877544 58999999998886543 3444455543 3456677 6884 7
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE 291 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e 291 (307)
++++||++. |-++ -+.+.+ + .... .+ . +...-.++.||||++|+|+++|.+......
T Consensus 78 ~~~~~~~l~--D~~~----~~~~~~----g----v~~~-------~~-~-~~~~~~p~~~lid~~G~v~~~~~g~~~~~~ 134 (140)
T cd03017 78 YGLPFPLLS--DPDG----KLAKAY----G----VWGE-------KK-K-KYMGIERSTFLIDPDGKIVKVWRKVKPKGH 134 (140)
T ss_pred hCCCceEEE--CCcc----HHHHHh----C----Cccc-------cc-c-ccCCcceeEEEECCCCEEEEEEecCCccch
Confidence 899999984 3222 122211 1 1110 00 0 000011578999999999999998887777
Q ss_pred HHHHH
Q psy6055 292 LEPDI 296 (307)
Q Consensus 292 Le~dI 296 (307)
+++.+
T Consensus 135 ~~~~~ 139 (140)
T cd03017 135 AEEVL 139 (140)
T ss_pred HHHHh
Confidence 76654
No 16
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.05 E-value=1.6e-10 Score=103.85 Aligned_cols=115 Identities=9% Similarity=-0.020 Sum_probs=72.5
Q ss_pred CCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhh----cccCCC----CCccCCC----hhhhccccceeecCCC
Q psy6055 147 GGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVV----DPISGR----GYKLRRY----KGKVLLIVHFRVSGKG 211 (307)
Q Consensus 147 ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~ll----fPcnQF----G~QEpgs----~~EI~~~l~F~~pg~~ 211 (307)
++.+.++.++++|||.| || |||.+|..|+|.+..+ +|...| |....++ ..-++ +|++ +
T Consensus 47 ~~y~~~~~~~l~GKV~l-vn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk---~fie---~ 119 (184)
T TIGR01626 47 TVYQPWGSAELAGKVRV-VHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVK---SSAK---K 119 (184)
T ss_pred ccceeccHHHcCCCEEE-EEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHH---HHHH---H
Confidence 45567788999999877 89 9999999999998765 222221 1100111 12233 3553 5
Q ss_pred CCccce---eecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceE-EEECCCCcEEEEecCCC
Q psy6055 212 FVPKFD---VFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEK-FLVGARGYPVARYDASV 287 (307)
Q Consensus 212 ygv~FP---Vf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTK-FLIDrdG~VV~Ry~p~~ 287 (307)
.+..|| ++ +|-+|..+ . .+ .+.--++. ||||++|+|+.++.+..
T Consensus 120 ~~~~~P~~~vl--lD~~g~v~--------~-------~~---------------gv~~~P~T~fVIDk~GkVv~~~~G~l 167 (184)
T TIGR01626 120 GKKENPWSQVV--LDDKGAVK--------N-------AW---------------QLNSEDSAIIVLDKTGKVKFVKEGAL 167 (184)
T ss_pred hcccCCcceEE--ECCcchHH--------H-------hc---------------CCCCCCceEEEECCCCcEEEEEeCCC
Confidence 577788 55 34344322 0 01 12223455 99999999999999999
Q ss_pred CcccHHHHHHHHhh
Q psy6055 288 EPSELEPDIVEELM 301 (307)
Q Consensus 288 ~P~eLe~dIekLL~ 301 (307)
+.+++++ +..+|+
T Consensus 168 ~~ee~e~-~~~li~ 180 (184)
T TIGR01626 168 SDSDIQT-VISLVN 180 (184)
T ss_pred CHHHHHH-HHHHHH
Confidence 8887766 444443
No 17
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.02 E-value=2.5e-10 Score=96.80 Aligned_cols=122 Identities=16% Similarity=0.065 Sum_probs=84.8
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC-----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR-----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp-----gs~~EI~~~l~F~~pg~~ 211 (307)
+.+++..++|+.++|++++||+++|+. +||+.|.++.+.++.++ .+++.+.++. .+.++++ +|++ +
T Consensus 42 p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~---~~~~---~ 115 (173)
T PRK03147 42 PNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVK---NFVN---R 115 (173)
T ss_pred CCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHH---HHHH---H
Confidence 345555689999999999999877555 89999999888886554 4444444432 2345566 5774 8
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE 291 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e 291 (307)
++++||++. |.++. +. +. |+ |.--++.||||++|+++..+.+..+.++
T Consensus 116 ~~~~~~~~~--d~~~~----~~----~~-------~~---------------v~~~P~~~lid~~g~i~~~~~g~~~~~~ 163 (173)
T PRK03147 116 YGLTFPVAI--DKGRQ----VI----DA-------YG---------------VGPLPTTFLIDKDGKVVKVITGEMTEEQ 163 (173)
T ss_pred hCCCceEEE--CCcch----HH----HH-------cC---------------CCCcCeEEEECCCCcEEEEEeCCCCHHH
Confidence 899999883 33221 11 11 11 2223588999999999999999988888
Q ss_pred HHHHHHHH
Q psy6055 292 LEPDIVEE 299 (307)
Q Consensus 292 Le~dIekL 299 (307)
+++.++++
T Consensus 164 l~~~l~~~ 171 (173)
T PRK03147 164 LEEYLEKI 171 (173)
T ss_pred HHHHHHHh
Confidence 77766643
No 18
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.00 E-value=4.6e-10 Score=94.46 Aligned_cols=128 Identities=10% Similarity=-0.008 Sum_probs=78.5
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--C-CCCCCcCcchhhhhh-cccCCCCCccC----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--T-DHIVVPSRLPSANVV-DPISGRGYKLR----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S-~Cg~c~qe~p~L~ll-fPcnQFG~QEp----gs~~EI~~~l~F~~pg~~ 211 (307)
+++.++.++|+.++|++|+||++||.. + ||+.|..+++.|+.+ ..+++.|++.. ++.++++ +|++ +
T Consensus 11 p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~---~~~~---~ 84 (154)
T PRK09437 11 PKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS---RFAE---K 84 (154)
T ss_pred CCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH---HHHH---H
Confidence 445566789999999999999877555 4 688899888877643 34555566653 3456677 6884 7
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE 291 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e 291 (307)
++++||++. |-+ +-+.+.+ + ..+.+ . .........+ .+.||||++|+|++.|.+-...+.
T Consensus 85 ~~~~~~~l~--D~~----~~~~~~~----g----v~~~~-~----~~~~~~~~~~-~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 85 ELLNFTLLS--DED----HQVAEQF----G----VWGEK-K----FMGKTYDGIH-RISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred hCCCCeEEE--CCC----chHHHHh----C----CCccc-c----cccccccCcc-eEEEEECCCCEEEEEEcCCCcchh
Confidence 899999984 322 1222222 1 11100 0 0000000012 367999999999999987554444
Q ss_pred HH
Q psy6055 292 LE 293 (307)
Q Consensus 292 Le 293 (307)
++
T Consensus 145 ~~ 146 (154)
T PRK09437 145 HD 146 (154)
T ss_pred HH
Confidence 33
No 19
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.99 E-value=2.6e-10 Score=102.35 Aligned_cols=119 Identities=10% Similarity=0.047 Sum_probs=81.0
Q ss_pred CCCCCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhcccCCCCCccCCChhhhccccceeecCCCCCc
Q psy6055 138 SASPENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVDPISGRGYKLRRYKGKVLLIVHFRVSGKGFVP 214 (307)
Q Consensus 138 ~~~~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llfPcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv 214 (307)
...+.+|++.||+.++|++|+ ||| |||++|.+++|.|+.++ +++|+++.+-+-+ ..-.+
T Consensus 52 ~~~~~~f~l~dG~~v~lsd~~-----lV~FwaswCp~C~~e~P~L~~l~--~~~g~~Vi~Vs~D-----------~~~~~ 113 (181)
T PRK13728 52 KPAPRWFRLSNGRQVNLADWK-----VVLFMQGHCPYCHQFDPVLKQLA--QQYGFSVFPYTLD-----------GQGDT 113 (181)
T ss_pred CCCCCccCCCCCCEeehhHce-----EEEEECCCCHhHHHHHHHHHHHH--HHcCCEEEEEEeC-----------CCCCC
Confidence 446788999999999999998 356 99999999999997653 2345544322110 12235
Q ss_pred cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEE-EEecCCCCcccHH
Q psy6055 215 KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPV-ARYDASVEPSELE 293 (307)
Q Consensus 215 ~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV-~Ry~p~~~P~eLe 293 (307)
.||++- +.++. .+... ||. .+.--++.||||++|+++ ..+.+..+.++|+
T Consensus 114 ~fPv~~--dd~~~-------~~~~~-------~g~-------------~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~ 164 (181)
T PRK13728 114 AFPEAL--PAPPD-------VMQTF-------FPN-------------IPVATPTTFLVNVNTLEALPLLQGATDAAGFM 164 (181)
T ss_pred CCceEe--cCchh-------HHHHH-------hCC-------------CCCCCCeEEEEeCCCcEEEEEEECCCCHHHHH
Confidence 788872 21111 11111 110 012236999999999996 5799999999999
Q ss_pred HHHHHHhhhh
Q psy6055 294 PDIVEELMKR 303 (307)
Q Consensus 294 ~dIekLL~~~ 303 (307)
+.|+++|+..
T Consensus 165 ~~I~~ll~~~ 174 (181)
T PRK13728 165 ARMDTVLQMY 174 (181)
T ss_pred HHHHHHHhhh
Confidence 9999999763
No 20
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.96 E-value=1.2e-09 Score=94.81 Aligned_cols=123 Identities=5% Similarity=-0.080 Sum_probs=73.6
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc---CC-CCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecCCCC
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG---TD-HIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN---S~-Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg~~y 212 (307)
+++...+|+.++|++|+||++| || +| |++|.++++.|+.+. .+ + +.+..+ +..+.+ +|+. .+
T Consensus 27 f~l~~~~g~~v~l~~~~Gk~vv-l~f~~s~~cp~C~~e~~~l~~~~~~~-~-~~~vv~vs~D~~~~~~---~f~~---~~ 97 (167)
T PRK00522 27 FTLVANDLSDVSLADFAGKRKV-LNIFPSIDTGVCATSVRKFNQEAAEL-D-NTVVLCISADLPFAQK---RFCG---AE 97 (167)
T ss_pred eEEEcCCCcEEehHHhCCCEEE-EEEEcCCCCCccHHHHHHHHHHHHHc-C-CcEEEEEeCCCHHHHH---HHHH---hC
Confidence 3444578999999999999755 77 78 999999999987654 33 2 455432 233444 6884 78
Q ss_pred Ccc-ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCccc---ceEEEECCCCcEEEEecCC--
Q psy6055 213 VPK-FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREP---YEKFLVGARGYPVARYDAS-- 286 (307)
Q Consensus 213 gv~-FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWN---FTKFLIDrdG~VV~Ry~p~-- 286 (307)
++. ||++. |-.+. - +.+..+ ..+. | ...+. .+.||||++|+|++.+...
T Consensus 98 ~~~~~~~ls--D~~~~---~----~~~~~g----v~~~--------~----~~~~g~~~r~tfvId~~G~I~~~~~~~~~ 152 (167)
T PRK00522 98 GLENVITLS--DFRDH---S----FGKAYG----VAIA--------E----GPLKGLLARAVFVLDENNKVVYSELVPEI 152 (167)
T ss_pred CCCCceEee--cCCcc---H----HHHHhC----Ceec--------c----cccCCceeeEEEEECCCCeEEEEEECCCc
Confidence 886 67773 21111 1 111111 1110 0 00122 2889999999999998432
Q ss_pred CCcccHHHHHHH
Q psy6055 287 VEPSELEPDIVE 298 (307)
Q Consensus 287 ~~P~eLe~dIek 298 (307)
.+...+++.|+.
T Consensus 153 ~~~~~~~~~l~~ 164 (167)
T PRK00522 153 TNEPDYDAALAA 164 (167)
T ss_pred CCCCCHHHHHHH
Confidence 222345555544
No 21
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.94 E-value=4.2e-10 Score=97.61 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=80.8
Q ss_pred CCCCCcccCCCC--cccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhcccCCCCCccC-----CChhhhccccceee
Q psy6055 139 ASPENSGIGGPD--RIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVDPISGRGYKLR-----RYKGKVLLIVHFRV 207 (307)
Q Consensus 139 ~~~~~ft~ldG~--~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llfPcnQFG~QEp-----gs~~EI~~~l~F~~ 207 (307)
..++++.+++|+ .++++++ +||++| |+ +||+.|.+++|.++.+.. .+.+.. .+.++.+ +|+.
T Consensus 40 ap~f~l~~~~G~~~~~~~~~~~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~---~~~~vi~V~~~~~~~~~~---~~~~ 112 (173)
T TIGR00385 40 VPAFPLAALREPLQAYTPEAFIQGKPVL-LNVWASWCPPCRAEHPYLNELAK---DGLPIVGVDYKDQSQNAL---KFLK 112 (173)
T ss_pred CCCccccccCCCCcccCHHHhcCCCEEE-EEEECCcCHHHHHHHHHHHHHHH---cCCEEEEEECCCChHHHH---HHHH
Confidence 344445567887 4555675 799766 66 899999999998876542 234432 2234444 5884
Q ss_pred cCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC
Q psy6055 208 SGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV 287 (307)
Q Consensus 208 pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~ 287 (307)
+++.+||++. .|-++.- ... |+ +.--++.|+||++|+|++++.+..
T Consensus 113 ---~~~~~f~~v~-~D~~~~~--------~~~-------~~---------------v~~~P~~~~id~~G~i~~~~~G~~ 158 (173)
T TIGR00385 113 ---ELGNPYQAIL-IDPNGKL--------GLD-------LG---------------VYGAPETFLVDGNGVILYRHAGPL 158 (173)
T ss_pred ---HcCCCCceEE-ECCCCch--------HHh-------cC---------------CeeCCeEEEEcCCceEEEEEeccC
Confidence 7888998431 1222211 111 11 111258899999999999999999
Q ss_pred CcccHHHHHHHHhh
Q psy6055 288 EPSELEPDIVEELM 301 (307)
Q Consensus 288 ~P~eLe~dIekLL~ 301 (307)
+.+++++.|+++|+
T Consensus 159 ~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 159 NNEVWTEGFLPAME 172 (173)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999885
No 22
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.92 E-value=1.4e-09 Score=93.35 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=83.4
Q ss_pred CCcccCCCCcccCCCC-CCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC------------CChhhhccccce
Q psy6055 142 ENSGIGGPDRIDGSRL-RGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR------------RYKGKVLLIVHF 205 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~y-KGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp------------gs~~EI~~~l~F 205 (307)
+.+..++|+.++|+++ +||++||.. +||+.|..+++.|+.+. .+.+.+++.. .+.++++ +|
T Consensus 7 f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~---~~ 83 (171)
T cd02969 7 FSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMK---AK 83 (171)
T ss_pred ccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHH---HH
Confidence 4455688999999999 999877655 99999999888886554 4444445432 1345666 57
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec-
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD- 284 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~- 284 (307)
+ ++++++||++. |-++ .+.+ . |+ |..-++.||||++|+|+++..
T Consensus 84 ~---~~~~~~~~~l~--D~~~----~~~~----~-------~~---------------v~~~P~~~lid~~G~v~~~~~~ 128 (171)
T cd02969 84 A---KEHGYPFPYLL--DETQ----EVAK----A-------YG---------------AACTPDFFLFDPDGKLVYRGRI 128 (171)
T ss_pred H---HHCCCCceEEE--CCch----HHHH----H-------cC---------------CCcCCcEEEECCCCeEEEeecc
Confidence 7 47899999984 3221 2221 1 11 222257899999999998752
Q ss_pred --------CCCCcccHHHHHHHHhhh
Q psy6055 285 --------ASVEPSELEPDIVEELMK 302 (307)
Q Consensus 285 --------p~~~P~eLe~dIekLL~~ 302 (307)
...+.+++++.|+++|..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 129 DDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred cCCcccccccccHHHHHHHHHHHHcC
Confidence 223446799999999874
No 23
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.87 E-value=1.9e-09 Score=93.28 Aligned_cols=130 Identities=11% Similarity=-0.036 Sum_probs=76.3
Q ss_pred CCcccCCC----CcccCCCCCCCeEEEEc----CCCCCCcCcchhhhhhc-ccCCCCCccCC---ChhhhccccceeecC
Q psy6055 142 ENSGIGGP----DRIDGSRLRGPSHRSVG----TDHIVVPSRLPSANVVD-PISGRGYKLRR---YKGKVLLIVHFRVSG 209 (307)
Q Consensus 142 ~~ft~ldG----~~vdLS~yKGKVvLVVN----S~Cg~c~qe~p~L~llf-PcnQFG~QEpg---s~~EI~~~l~F~~pg 209 (307)
+.+..++| +.++|++++||++| || +||+.|..+++.|+.++ .+.+.|+++.. ++++..+ +|..--
T Consensus 8 f~~~~~~g~~~~~~~~l~~~~Gk~vv-l~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~--~~~~~~ 84 (173)
T cd03015 8 FKATAVVPNGEFKEISLSDYKGKWVV-LFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHL--AWRNTP 84 (173)
T ss_pred CEeecccCCCCceEEehHHhCCCEEE-EEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHH--HHHHhh
Confidence 44445666 79999999999766 56 79999999999987654 56666666542 2222211 243200
Q ss_pred C----CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 210 K----GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 210 ~----~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
. ..+++||++. |-.+. +.+.+. .+.. + ..+.+ ++.||||++|+|++++.+
T Consensus 85 ~~~~~~~~~~f~~l~--D~~~~----~~~~~g--------v~~~--------~---~~~~~-p~~~lID~~G~I~~~~~~ 138 (173)
T cd03015 85 RKEGGLGKINFPLLA--DPKKK----ISRDYG--------VLDE--------E---EGVAL-RGTFIIDPEGIIRHITVN 138 (173)
T ss_pred hhhCCccCcceeEEE--CCchh----HHHHhC--------Cccc--------c---CCcee-eEEEEECCCCeEEEEEec
Confidence 0 1467899984 32222 222111 1100 0 01112 378999999999999954
Q ss_pred CC----CcccHHHHHHHHh
Q psy6055 286 SV----EPSELEPDIVEEL 300 (307)
Q Consensus 286 ~~----~P~eLe~dIekLL 300 (307)
.. +.++|.+.|+++.
T Consensus 139 ~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 139 DLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred CCCCCCCHHHHHHHHHHhh
Confidence 33 3345666666553
No 24
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=3.9e-09 Score=115.11 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=87.3
Q ss_pred CCCCcccC-CCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----------ChhhhccccceeecCCC
Q psy6055 147 GGPDRIDG-SRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----------YKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 147 ldG~~vdL-S~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----------s~~EI~~~l~F~~pg~~ 211 (307)
++|+.++| ++++||++| || +||++|.+++|.|+.++ .+++.+++..+ +.++++ +|+ .+
T Consensus 407 ~~g~~~~l~~~lkGK~vl-l~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~---~~~---~~ 479 (1057)
T PLN02919 407 LNTAPLQFRRDLKGKVVI-LDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIR---NAV---LR 479 (1057)
T ss_pred cCCccccchhhcCCCEEE-EEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHH---HHH---HH
Confidence 78999998 689999877 67 99999999999997654 66666554321 234566 687 48
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE 291 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e 291 (307)
++++||+.. |-++ .+++ . | .|.--++.||||++|+++.++.+....++
T Consensus 480 ~~i~~pvv~--D~~~----~~~~----~-------~---------------~V~~iPt~ilid~~G~iv~~~~G~~~~~~ 527 (1057)
T PLN02919 480 YNISHPVVN--DGDM----YLWR----E-------L---------------GVSSWPTFAVVSPNGKLIAQLSGEGHRKD 527 (1057)
T ss_pred hCCCccEEE--CCch----HHHH----h-------c---------------CCCccceEEEECCCCeEEEEEecccCHHH
Confidence 999999873 3221 1222 1 1 23344688999999999999999999999
Q ss_pred HHHHHHHHhhh
Q psy6055 292 LEPDIVEELMK 302 (307)
Q Consensus 292 Le~dIekLL~~ 302 (307)
|++.|+++|.-
T Consensus 528 l~~~l~~~l~~ 538 (1057)
T PLN02919 528 LDDLVEAALQY 538 (1057)
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 25
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.83 E-value=2.5e-09 Score=87.77 Aligned_cols=133 Identities=14% Similarity=0.046 Sum_probs=78.8
Q ss_pred CCCcccCCCCcccCCCCC-CCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecCCC
Q psy6055 141 PENSGIGGPDRIDGSRLR-GPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yK-GKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg~~ 211 (307)
++++++++|+.++|++++ ||++||++ +||++|..++|.|+.++ .+.+.|.+..+ +.++.. +|+ ..
T Consensus 4 ~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~---~~~---~~ 77 (149)
T cd02970 4 DFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE---AFD---KG 77 (149)
T ss_pred CccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH---HHH---Hh
Confidence 345556899999999986 57667666 89999999999997654 45556666542 233344 577 47
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCc---cccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTE---PLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~---~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
++++||++. |-+ .-+++.+.-........... ............++....++.||||++|+|+..+.+
T Consensus 78 ~~~~~p~~~--D~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 KFLPFPVYA--DPD----RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred cCCCCeEEE--CCc----hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 889999984 322 23444433211000000000 000001111222334456789999999999988754
No 26
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.78 E-value=5.1e-10 Score=89.39 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=74.4
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--C-CCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCC
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--T-DHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S-~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~y 212 (307)
.+.++..+|+.++|++++||++||+- + ||+.|..+++.|+.++ .+.+.+.+.. .+.++++ +|++ .+
T Consensus 7 ~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~---~~~~---~~ 80 (124)
T PF00578_consen 7 DFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIK---QFLE---EY 80 (124)
T ss_dssp CEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHH---HHHH---HH
T ss_pred CcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchh---hhhh---hh
Confidence 34455689999999999999877544 6 9999999999887654 4555556653 3455677 5774 78
Q ss_pred CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy6055 213 VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 213 gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~R 282 (307)
+++||++. | ..+.+.+.+.-.. .......++.||||++|+|+++
T Consensus 81 ~~~~~~~~--D----~~~~~~~~~~~~~--------------------~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 81 GLPFPVLS--D----PDGELAKAFGIED--------------------EKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp TCSSEEEE--E----TTSHHHHHTTCEE--------------------TTTSEESEEEEEEETTSBEEEE
T ss_pred cccccccc--C----cchHHHHHcCCcc--------------------ccCCceEeEEEEECCCCEEEeC
Confidence 89999994 3 2223222211100 0023355789999999999875
No 27
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.78 E-value=1.4e-08 Score=89.90 Aligned_cols=104 Identities=12% Similarity=-0.020 Sum_probs=67.2
Q ss_pred CCCCCcccCCCCcccCC--CCCCCeEEEEc---CCCCCCcCcchhhhhhcccCCCCCcc--CCChhhhccccceeecCCC
Q psy6055 139 ASPENSGIGGPDRIDGS--RLRGPSHRSVG---TDHIVVPSRLPSANVVDPISGRGYKL--RRYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 139 ~~~~~ft~ldG~~vdLS--~yKGKVvLVVN---S~Cg~c~qe~p~L~llfPcnQFG~QE--pgs~~EI~~~l~F~~pg~~ 211 (307)
.+++++++++|+.++++ .++||+++ |+ +||++|.+++|.++.++.-.+..+.. .++.++.+ +|++ +
T Consensus 52 aP~f~l~d~~G~~v~l~~~~~~gk~vv-l~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~---~~~~---~ 124 (189)
T TIGR02661 52 APIFNLPDFDGEPVRIGGSIAPGRPTL-LMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHR---RFLK---D 124 (189)
T ss_pred CCCcEecCCCCCEEeccchhcCCCEEE-EEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHH---HHHH---h
Confidence 34455567899999994 68999766 66 89999999999887654211221111 23445666 6884 7
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~R 282 (307)
++++|+.+. ..+ . +.+. |+ +..-++.||||++|+|+++
T Consensus 125 ~~~~~~~~~---~~~----~----i~~~-------y~---------------v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 125 HELGGERYV---VSA----E----IGMA-------FQ---------------VGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred cCCCcceee---chh----H----HHHh-------cc---------------CCccceEEEECCCCeEEEc
Confidence 888887653 111 1 1111 21 2334678999999999986
No 28
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.77 E-value=8.5e-09 Score=85.42 Aligned_cols=113 Identities=4% Similarity=-0.079 Sum_probs=69.1
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc---CC-CCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecCCC
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG---TD-HIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN---S~-Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg~~ 211 (307)
++++...+|+.++|++|+||++| +| +| |++|..+++.|+.++ .+. |.+..+ +.+..+ +|. ++
T Consensus 8 ~f~l~~~~g~~~~l~~~~gk~vv-l~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~---~~~---~~ 78 (143)
T cd03014 8 DFTLVTSDLSEVSLADFAGKVKV-ISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQK---RWC---GA 78 (143)
T ss_pred CcEEECCCCcEEeHHHhCCCeEE-EEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHH---HHH---Hh
Confidence 34555689999999999999766 66 67 799999999987654 332 555432 223344 576 36
Q ss_pred CCc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC
Q psy6055 212 FVP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV 287 (307)
Q Consensus 212 ygv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~ 287 (307)
++. +||++..-+ .+. . ....+ .+.. . ..+ ...+.||||++|+|+..+.+..
T Consensus 79 ~~~~~~~~l~D~~-~~~-------~-~~~~g----v~~~---------~--~~~-~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 79 EGVDNVTTLSDFR-DHS-------F-GKAYG----VLIK---------D--LGL-LARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred cCCCCceEeecCc-ccH-------H-HHHhC----Ceec---------c--CCc-cceEEEEEcCCCeEEEEEECCC
Confidence 665 788874221 011 1 11111 1100 0 000 1248899999999999997543
No 29
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.75 E-value=1.1e-08 Score=83.56 Aligned_cols=119 Identities=8% Similarity=-0.040 Sum_probs=75.7
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCC
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~y 212 (307)
++.+..++|+.++|++++||++||+- +||..|..+++.|+.++ .+++.+.+.. .+.++++ +|+. ++
T Consensus 4 ~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~---~~~~---~~ 77 (140)
T cd02971 4 DFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHK---AWAE---KE 77 (140)
T ss_pred CceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH---HHHh---cc
Confidence 34555689999999999999887654 69999999999887554 3433445442 2334455 6774 67
Q ss_pred -CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCC
Q psy6055 213 -VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVE 288 (307)
Q Consensus 213 -gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~ 288 (307)
+.+||++. |-++ .+.+ ..+ .... +...+... ..+.||||++|+|++++.+...
T Consensus 78 ~~~~~~~l~--D~~~----~~~~----~~g----~~~~--------~~~~~~~~-~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 78 GGLNFPLLS--DPDG----EFAK----AYG----VLIE--------KSAGGGLA-ARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred cCCCceEEE--CCCh----HHHH----HcC----Cccc--------cccccCce-eEEEEEECCCCcEEEEEecCCC
Confidence 88999983 3221 2222 221 1111 00001112 2478999999999999987665
No 30
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.75 E-value=1.9e-09 Score=87.62 Aligned_cols=113 Identities=11% Similarity=0.040 Sum_probs=74.5
Q ss_pred CCCCcccCCC--CcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhcccCCCCCccC-----CChhhhccccceeecC
Q psy6055 140 SPENSGIGGP--DRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVDPISGRGYKLR-----RYKGKVLLIVHFRVSG 209 (307)
Q Consensus 140 ~~~~ft~ldG--~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llfPcnQFG~QEp-----gs~~EI~~~l~F~~pg 209 (307)
++++...++| +.+++++++||++| |+ +||+.|.+++|.++.+.. +++++.. .+.++++ +|+.
T Consensus 4 p~f~~~~~~g~~~~~~~~~~~gk~vv-v~F~a~~C~~C~~~~~~l~~l~~--~~~~~vv~v~~~~~~~~~~---~~~~-- 75 (127)
T cd03010 4 PAFSLPALPGPDKTLTSADLKGKPYL-LNVWASWCAPCREEHPVLMALAR--QGRVPIYGINYKDNPENAL---AWLA-- 75 (127)
T ss_pred CCcccccccCCCccccHHHcCCCEEE-EEEEcCcCHHHHHHHHHHHHHHH--hcCcEEEEEECCCCHHHHH---HHHH--
Confidence 3455556777 88999999999866 56 899999999998876542 2234432 3345566 5774
Q ss_pred CCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCc
Q psy6055 210 KGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEP 289 (307)
Q Consensus 210 ~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P 289 (307)
++++.|+... +|-++. +.... + |.--++.||||++|+|+.++.+..+.
T Consensus 76 -~~~~~~~~~~-~D~~~~--------~~~~~-------~---------------v~~~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 76 -RHGNPYAAVG-FDPDGR--------VGIDL-------G---------------VYGVPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred -hcCCCCceEE-ECCcch--------HHHhc-------C---------------CCCCCeEEEECCCceEEEEEeccCCh
Confidence 7888886431 221111 11111 1 11235789999999999999998876
Q ss_pred ccH
Q psy6055 290 SEL 292 (307)
Q Consensus 290 ~eL 292 (307)
+.|
T Consensus 124 ~~~ 126 (127)
T cd03010 124 EVW 126 (127)
T ss_pred Hhc
Confidence 654
No 31
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.73 E-value=1.6e-08 Score=80.13 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=65.9
Q ss_pred CCcccCCCCcccCCCCC-CCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCC
Q psy6055 142 ENSGIGGPDRIDGSRLR-GPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yK-GKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~y 212 (307)
+.+++++|+.++|++++ ||++| |+ +||+.|.+++|.++.+. .+.+ +.+.. ++.++.+ +|++ ++
T Consensus 3 f~l~~~~G~~~~l~~~~~gk~vv-l~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~---~~~~---~~ 74 (114)
T cd02967 3 FDLTTIDGAPVRIGGISPGRPTL-LFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQ---RFLK---KH 74 (114)
T ss_pred ceeecCCCCEEEcccccCCCeEE-EEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHH---HHHH---Hh
Confidence 44567899999999998 99766 55 89999999999887553 2322 22221 2345565 5774 78
Q ss_pred Ccc-ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy6055 213 VPK-FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 213 gv~-FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~R 282 (307)
++. ||++- ++ . +.. .|+ +..-++.||||++|+|+++
T Consensus 75 ~~~~~p~~~----~~----~----~~~-------~~~---------------~~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 75 GLEAFPYVL----SA----E----LGM-------AYQ---------------VSKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred CCCCCcEEe----cH----H----HHh-------hcC---------------CCCcCeEEEECCCCeEEec
Confidence 874 88762 11 1 111 122 3334789999999999875
No 32
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.71 E-value=1.9e-08 Score=80.81 Aligned_cols=115 Identities=18% Similarity=0.050 Sum_probs=80.2
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhccc-CCCCCccC-CChhhhccccceeecCCCCCcc
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVDPI-SGRGYKLR-RYKGKVLLIVHFRVSGKGFVPK 215 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llfPc-nQFG~QEp-gs~~EI~~~l~F~~pg~~ygv~ 215 (307)
++.+++++|+.+++++++||++| |+ +||+.|..++|.|+.++.- +-.+.... ++.++++ +|++ +++++
T Consensus 2 ~f~l~~~~g~~~~~~~~~~k~~v-l~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~---~~~~---~~~~~ 74 (123)
T cd03011 2 LFTATTLDGEQFDLESLSGKPVL-VYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVA---RFMQ---KKGYG 74 (123)
T ss_pred CceeecCCCCEeeHHHhCCCEEE-EEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHH---HHHH---HcCCC
Confidence 35566789999999999999766 56 8999999999988765422 11112111 2456677 5884 78899
Q ss_pred ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcccHHHH
Q psy6055 216 FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPD 295 (307)
Q Consensus 216 FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~d 295 (307)
||++. |.++ . +.... +|..-++-||||++| ++.++.+..++++|++.
T Consensus 75 ~~~~~--d~~~----~----~~~~~----------------------~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 75 FPVIN--DPDG----V----ISARW----------------------GVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred ccEEE--CCCc----H----HHHhC----------------------CCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 99873 3222 1 11111 234446899999999 99999999999988654
No 33
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.71 E-value=1.3e-08 Score=91.31 Aligned_cols=128 Identities=12% Similarity=-0.013 Sum_probs=78.2
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----Chhh----hccccceeecC
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGK----VLLIVHFRVSG 209 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~E----I~~~l~F~~pg 209 (307)
+++.+.+| .++|++|+||++||++ +||+.|..|++.|+.++ .+.+.|.++.+ +.++ ++ ++.
T Consensus 11 F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~---~~~--- 83 (202)
T PRK13190 11 FTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLR---DIE--- 83 (202)
T ss_pred cEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH---hHH---
Confidence 33344566 7999999999877777 89999999999887654 56666776643 1111 22 233
Q ss_pred CCCC--ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe----
Q psy6055 210 KGFV--PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY---- 283 (307)
Q Consensus 210 ~~yg--v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry---- 283 (307)
.+++ ++|||+. |-++. +.+ ..+ .+.. . .... -.+.||||++|+|+...
T Consensus 84 ~~~g~~~~fPll~--D~~~~----ia~----~yg----v~~~---------~--~g~~-~p~~fiId~~G~I~~~~~~~~ 137 (202)
T PRK13190 84 ERFGIKIPFPVIA--DIDKE----LAR----EYN----LIDE---------N--SGAT-VRGVFIIDPNQIVRWMIYYPA 137 (202)
T ss_pred HhcCCCceEEEEE--CCChH----HHH----HcC----Cccc---------c--CCcE-EeEEEEECCCCEEEEEEEeCC
Confidence 1344 6899994 43322 222 111 1100 0 0011 25789999999998776
Q ss_pred cCCCCcccHHHHHHHHhhh
Q psy6055 284 DASVEPSELEPDIVEELMK 302 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~ 302 (307)
...-+.++|.+.|+.+...
T Consensus 138 ~~gr~~~ellr~l~~l~~~ 156 (202)
T PRK13190 138 ETGRNIDEIIRITKALQVN 156 (202)
T ss_pred CCCCCHHHHHHHHHHhhhH
Confidence 3233556787888777653
No 34
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.69 E-value=2e-08 Score=88.76 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=67.7
Q ss_pred CCCC--cccCCCCCCCeEEEEc----CCCCCCcCcchhhhhhc-ccCCCCCccCC---Chhhhccccceeec-CCCCCcc
Q psy6055 147 GGPD--RIDGSRLRGPSHRSVG----TDHIVVPSRLPSANVVD-PISGRGYKLRR---YKGKVLLIVHFRVS-GKGFVPK 215 (307)
Q Consensus 147 ldG~--~vdLS~yKGKVvLVVN----S~Cg~c~qe~p~L~llf-PcnQFG~QEpg---s~~EI~~~l~F~~p-g~~ygv~ 215 (307)
.+|+ .+++++|+||++| |+ +||+.|..+++.|+.++ .+.+.|.++.+ ++.+..+ +|+.. +...+++
T Consensus 17 ~~g~~~~~sl~d~~Gk~vv-l~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~--~~~~~~~~~~~l~ 93 (187)
T TIGR03137 17 HNGEFVEVTDEDVKGKWSV-FFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHK--AWHDTSEAIGKIT 93 (187)
T ss_pred cCCceeEecHHHHCCCEEE-EEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHH--HHHhhhhhccCcc
Confidence 3676 6888999999766 56 89999999999997654 45666777653 2222221 34420 0123678
Q ss_pred ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCc
Q psy6055 216 FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEP 289 (307)
Q Consensus 216 FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P 289 (307)
||++. |-++. +.+ ..+ .+.. ...+ ...+.||||++|+|+..+.....+
T Consensus 94 fplls--D~~~~----~a~----~~g----v~~~-----------~~g~-~~p~tfiID~~G~I~~~~~~~~~~ 141 (187)
T TIGR03137 94 YPMLG--DPTGV----LTR----NFG----VLIE-----------EAGL-ADRGTFVIDPEGVIQAVEITDNGI 141 (187)
T ss_pred eeEEE--CCccH----HHH----HhC----Cccc-----------CCCc-eeeEEEEECCCCEEEEEEEeCCCC
Confidence 99984 32221 111 111 1100 0000 125789999999999998654443
No 35
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.65 E-value=6.2e-09 Score=90.28 Aligned_cols=99 Identities=12% Similarity=-0.026 Sum_probs=61.5
Q ss_pred CCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCC-------CCCccC-----CChhhhccccceeecCCC
Q psy6055 148 GPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISG-------RGYKLR-----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQ-------FG~QEp-----gs~~EI~~~l~F~~pg~~ 211 (307)
+-+.++|++|+||+++ || |||++|.+++|.|+.++ .+++ .+++.. .+.++++ +|+. +
T Consensus 14 ~~~~~~ls~~kgk~vl-L~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~---~f~~---~ 86 (146)
T cd03008 14 DTEREIVARLENRVLL-LFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQE---SFLK---D 86 (146)
T ss_pred hcccccHHHhCCCEEE-EEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHH---HHHH---H
Confidence 4457788999999866 88 99999999999998655 2332 134432 2234455 6874 7
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~R 282 (307)
.+++|+..--.+. .. .-|....+ |.--++.||||++|+|+.+
T Consensus 87 ~~~~~~~~p~~~~---~~----~~l~~~y~----------------------v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 87 MPKKWLFLPFEDE---FR----RELEAQFS----------------------VEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCCCceeecccch---HH----HHHHHHcC----------------------CCCCCEEEEECCCCcEEee
Confidence 7777644311110 00 01222221 2223589999999999987
No 36
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.64 E-value=1e-08 Score=84.15 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=53.2
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCC-CcCcchhhhhhc-ccCCCC---CccC--------CChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIV-VPSRLPSANVVD-PISGRG---YKLR--------RYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~-c~qe~p~L~llf-PcnQFG---~QEp--------gs~~EI~~~l~F 205 (307)
++.+.+.+|+.++|++++||++||+- +||++ |.++++.|+.++ .+.+.+ ++.. .+.++++ +|
T Consensus 4 ~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~---~~ 80 (142)
T cd02968 4 DFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK---AY 80 (142)
T ss_pred ceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH---HH
Confidence 34455689999999999999877555 99998 999998886543 455543 4432 1235566 68
Q ss_pred eecCCCCCccceeec
Q psy6055 206 RVSGKGFVPKFDVFG 220 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~ 220 (307)
++ +++.+||++.
T Consensus 81 ~~---~~~~~~~~l~ 92 (142)
T cd02968 81 AK---AFGPGWIGLT 92 (142)
T ss_pred HH---HhCCCcEEEE
Confidence 84 7888899873
No 37
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.63 E-value=2.9e-08 Score=101.52 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=77.8
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----------Chhhhccccceee
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----------YKGKVLLIVHFRV 207 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----------s~~EI~~~l~F~~ 207 (307)
+.+.+++|+.+.|+ +||++| || +||++|.+++|.|+.+. .+++.+++... +.++++ +|+.
T Consensus 41 f~l~D~dG~~v~ls--kGKpVv-V~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~---~~~~ 114 (521)
T PRK14018 41 LKTADNRPASVYLK--KDKPTL-IKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQ---KWYA 114 (521)
T ss_pred eEeecCCCceeecc--CCCEEE-EEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHH---HHHH
Confidence 33446899999998 999866 78 99999999999997654 45544444321 123344 4542
Q ss_pred cCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC
Q psy6055 208 SGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV 287 (307)
Q Consensus 208 pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~ 287 (307)
+.+|. +|||. +|.++ .+.+. | .|+.-++.||||++|+++.++.+..
T Consensus 115 -~~~y~-~~pV~--~D~~~----~lak~-----------f---------------gV~giPTt~IIDkdGkIV~~~~G~~ 160 (521)
T PRK14018 115 -GLDYP-KLPVL--TDNGG----TLAQS-----------L---------------NISVYPSWAIIGKDGDVQRIVKGSI 160 (521)
T ss_pred -hCCCc-cccee--ccccH----HHHHH-----------c---------------CCCCcCeEEEEcCCCeEEEEEeCCC
Confidence 01222 46666 23222 22221 1 2444569999999999999999999
Q ss_pred CcccHHHHHHH
Q psy6055 288 EPSELEPDIVE 298 (307)
Q Consensus 288 ~P~eLe~dIek 298 (307)
+.++|++.|+.
T Consensus 161 ~~eeL~a~Ie~ 171 (521)
T PRK14018 161 SEAQALALIRN 171 (521)
T ss_pred CHHHHHHHHHH
Confidence 99999888873
No 38
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.61 E-value=5e-08 Score=74.29 Aligned_cols=106 Identities=16% Similarity=0.082 Sum_probs=69.7
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCcc-----CC-ChhhhccccceeecCCCC
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKL-----RR-YKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QE-----pg-s~~EI~~~l~F~~pg~~y 212 (307)
+.+.+++|+.+++++++||++||.- +||+.|....+.+..+. .+.+.+.+. .. +.++++ +|+. .+
T Consensus 2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~---~~~~---~~ 75 (116)
T cd02966 2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVK---AFLK---KY 75 (116)
T ss_pred ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHH---HHHH---Hc
Confidence 3455689999999999999877655 89999988887776543 222122221 11 256677 5774 77
Q ss_pred CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 213 VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 213 gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
+.+|+++... + .. +.+. |+ +...++-||||++|+++.+|.|
T Consensus 76 ~~~~~~~~~~--~----~~----~~~~-------~~---------------~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 76 GITFPVLLDP--D----GE----LAKA-------YG---------------VRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CCCcceEEcC--c----ch----HHHh-------cC---------------cCccceEEEECCCCcEEEEecC
Confidence 7889987422 1 11 1111 22 2234577999999999999865
No 39
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.61 E-value=3.6e-08 Score=89.83 Aligned_cols=133 Identities=10% Similarity=-0.028 Sum_probs=78.9
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCC----hhhhccccceeecCCCCC
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRY----KGKVLLIVHFRVSGKGFV 213 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs----~~EI~~~l~F~~pg~~yg 213 (307)
+.+.+.+|+.+.+++|+||++++++ +||+.|..|++.|+.++ .+.+.|.+..+- ...-+...+|++-..+.+
T Consensus 11 F~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~ 90 (215)
T PRK13599 11 MEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIA 90 (215)
T ss_pred CEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCC
Confidence 3334478998888999999877788 89999999999987655 566677776542 111111112332001467
Q ss_pred ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec-CC-C--Cc
Q psy6055 214 PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD-AS-V--EP 289 (307)
Q Consensus 214 v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~-p~-~--~P 289 (307)
++|||+. |.++.-+ +. ||. ..+.. .+.=-.+.||||++|+|+..+. |. + +.
T Consensus 91 i~fPil~--D~~~~va--------~~-------yg~------~~~~~--~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~ 145 (215)
T PRK13599 91 IPFPVIA--DDLGKVS--------NQ-------LGM------IHPGK--GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNV 145 (215)
T ss_pred CceeEEE--CCCchHH--------HH-------cCC------CccCC--CCceeeEEEEECCCCEEEEEEEcCCCCCCCH
Confidence 8999994 4333322 11 121 00000 1111258899999999998863 32 1 23
Q ss_pred ccHHHHHHHH
Q psy6055 290 SELEPDIVEE 299 (307)
Q Consensus 290 ~eLe~dIekL 299 (307)
++|.+.|++|
T Consensus 146 ~eilr~l~~l 155 (215)
T PRK13599 146 DEILRALKAL 155 (215)
T ss_pred HHHHHHHHHh
Confidence 4555556554
No 40
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.60 E-value=3.9e-08 Score=88.06 Aligned_cols=126 Identities=10% Similarity=-0.018 Sum_probs=75.3
Q ss_pred CCcccCCCCcccCCCCCC-CeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----Chh-------hhccccce
Q psy6055 142 ENSGIGGPDRIDGSRLRG-PSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKG-------KVLLIVHF 205 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKG-KVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~-------EI~~~l~F 205 (307)
+.+...+| .++|++|+| |++++++ +||+.|..+++.|+.++ .+.+.|.+..+ +.. +|+ ++
T Consensus 8 F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~---~~ 83 (203)
T cd03016 8 FEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIE---EY 83 (203)
T ss_pred eEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHH---Hh
Confidence 33344566 599999999 7777778 89999999999987654 56667777643 111 122 23
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
. +.+++|||+. |.++. +. +. ||.. .+.. .......+.||||++|+|+..+..
T Consensus 84 ~----~~~~~fpil~--D~~~~----ia----~~-------yg~~------~~~~-~~~~~~r~~fiID~~G~I~~~~~~ 135 (203)
T cd03016 84 T----GVEIPFPIIA--DPDRE----VA----KL-------LGMI------DPDA-GSTLTVRAVFIIDPDKKIRLILYY 135 (203)
T ss_pred c----CCCCceeEEE--CchHH----HH----HH-------cCCc------cccC-CCCceeeEEEEECCCCeEEEEEec
Confidence 2 2788999994 33321 11 11 2210 0000 011112468999999999988754
Q ss_pred CC----CcccHHHHHHHH
Q psy6055 286 SV----EPSELEPDIVEE 299 (307)
Q Consensus 286 ~~----~P~eLe~dIekL 299 (307)
.. +.++|.+.|++|
T Consensus 136 ~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 136 PATTGRNFDEILRVVDAL 153 (203)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 33 334566666554
No 41
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=6.8e-08 Score=85.23 Aligned_cols=121 Identities=10% Similarity=-0.010 Sum_probs=76.7
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecCCCCC
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSGKGFV 213 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg~~yg 213 (307)
+++...+|+.|+|++|+||+|++.- .+++.|-.|.-.++..+ .+++-|.++.| +.+.-+ +|+ .+++
T Consensus 13 F~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~---~F~---~k~~ 86 (157)
T COG1225 13 FELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHK---KFA---EKHG 86 (157)
T ss_pred eEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH---HHH---HHhC
Confidence 4444578999999999999666555 67888987776666544 56777777654 345566 699 4999
Q ss_pred ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCC-cccceEEEECCCCcEEEEecCCCCcc
Q psy6055 214 PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDV-REPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 214 v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~I-kWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
++||+++ |-++.- .-.|.-++.+. .+|. .. --.-.+||||++|+|++.| ..+.+.
T Consensus 87 L~f~LLS--D~~~~v-~~~ygv~~~k~-----~~gk-------------~~~~~~R~TfvId~dG~I~~~~-~~v~~~ 142 (157)
T COG1225 87 LTFPLLS--DEDGEV-AEAYGVWGEKK-----MYGK-------------EYMGIERSTFVIDPDGKIRYVW-RKVKVK 142 (157)
T ss_pred CCceeeE--CCcHHH-HHHhCcccccc-----cCcc-------------ccccccceEEEECCCCeEEEEe-cCCCCc
Confidence 9999994 322221 11121111111 1110 10 1123789999999999999 555554
No 42
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.53 E-value=7.2e-08 Score=79.64 Aligned_cols=103 Identities=11% Similarity=0.013 Sum_probs=62.4
Q ss_pred cCCCC-cccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCC--CCccC-----CChhhhccccceeecCCCCC
Q psy6055 146 IGGPD-RIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGR--GYKLR-----RYKGKVLLIVHFRVSGKGFV 213 (307)
Q Consensus 146 ~ldG~-~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQF--G~QEp-----gs~~EI~~~l~F~~pg~~yg 213 (307)
++||+ +++|++|+||++| |+ +||+.|.+++|.|+.++ .+++. +++.. .+.++++ +|++ +++
T Consensus 3 ~~~~~~~v~l~~~~Gk~vl-l~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~---~~~~---~~~ 75 (132)
T cd02964 3 LLDGEGVVPVSALEGKTVG-LYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFN---EYFS---EMP 75 (132)
T ss_pred cccCCccccHHHhCCCEEE-EEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHH---HHHh---cCC
Confidence 57888 9999999999866 67 89999999999887543 34432 33332 2334555 5774 554
Q ss_pred ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 214 PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 214 v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
.++.+.-.+ . ..-+.+++..+ |.--++.||||++|+|+.+..
T Consensus 76 -~~~~~~~~d-----~-~~~~~~~~~~~----------------------v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 76 -PWLAVPFED-----E-ELRELLEKQFK----------------------VEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred -CeEeeccCc-----H-HHHHHHHHHcC----------------------CCCCCEEEEECCCCCEEchhH
Confidence 333221000 0 00112332221 222269999999999997653
No 43
>PRK13189 peroxiredoxin; Provisional
Probab=98.49 E-value=1.4e-07 Score=86.30 Aligned_cols=132 Identities=9% Similarity=-0.044 Sum_probs=75.8
Q ss_pred CCcccCCCCcccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCC---hhhhccccceeec---CC
Q psy6055 142 ENSGIGGPDRIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRY---KGKVLLIVHFRVS---GK 210 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs---~~EI~~~l~F~~p---g~ 210 (307)
+++...+|+ ++|+++ +||.+++++ +||..|..+++.|+.++ .+.+.|.++.+- +.+... +|++. ..
T Consensus 18 F~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~--aw~~~~~~~~ 94 (222)
T PRK13189 18 FEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHI--KWVEWIKEKL 94 (222)
T ss_pred cEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH--HHHHhHHHhc
Confidence 333456774 788775 999777788 89999999999987554 566677776531 111110 23320 01
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC---
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV--- 287 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~--- 287 (307)
+.+++|||+. |.++.-+ +. ||.. .+.. ... ...+.||||++|+|+..+....
T Consensus 95 g~~i~fPlls--D~~~~ia--------~~-------ygv~------~~~~-~~~-~~r~tfIID~~G~Ir~~~~~~~~~g 149 (222)
T PRK13189 95 GVEIEFPIIA--DDRGEIA--------KK-------LGMI------SPGK-GTN-TVRAVFIIDPKGIIRAILYYPQEVG 149 (222)
T ss_pred CcCcceeEEE--cCccHHH--------HH-------hCCC------cccc-CCC-ceeEEEEECCCCeEEEEEecCCCCC
Confidence 2467999994 4333211 11 1210 0000 001 2357899999999987764322
Q ss_pred -CcccHHHHHHHHhh
Q psy6055 288 -EPSELEPDIVEELM 301 (307)
Q Consensus 288 -~P~eLe~dIekLL~ 301 (307)
+.+++.+.|+.+..
T Consensus 150 r~~~eilr~l~alq~ 164 (222)
T PRK13189 150 RNMDEILRLVKALQT 164 (222)
T ss_pred CCHHHHHHHHHHhhh
Confidence 33466666666543
No 44
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.45 E-value=7.9e-08 Score=90.65 Aligned_cols=133 Identities=14% Similarity=0.001 Sum_probs=77.1
Q ss_pred CCCCCCccc---CCCC--cccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCC---hhhhccccc
Q psy6055 138 SASPENSGI---GGPD--RIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRY---KGKVLLIVH 204 (307)
Q Consensus 138 ~~~~~~ft~---ldG~--~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs---~~EI~~~l~ 204 (307)
.+..++|++ .+|+ .++|++| +||++|++- +||+.|..|++.|+.++ .+.+.|.++.+- ..+... +
T Consensus 71 Gd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~--a 148 (261)
T PTZ00137 71 GKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHK--A 148 (261)
T ss_pred CCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH--H
Confidence 333455653 4565 5899998 998766554 89999999999997654 677778776532 211111 2
Q ss_pred eee----cCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEE
Q psy6055 205 FRV----SGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPV 280 (307)
Q Consensus 205 F~~----pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV 280 (307)
|++ -+...+++|||+. |.++. +.+. ||.. .. .--...+.||||++|+|+
T Consensus 149 w~~~~~~~~g~~~l~fPlLs--D~~~~--------iaka-------yGv~------~~----~g~a~R~tFIID~dG~I~ 201 (261)
T PTZ00137 149 WKELDVRQGGVSPLKFPLFS--DISRE--------VSKS-------FGLL------RD----EGFSHRASVLVDKAGVVK 201 (261)
T ss_pred HHhhhhhhccccCcceEEEE--cCChH--------HHHH-------cCCC------Cc----CCceecEEEEECCCCEEE
Confidence 331 0002578999994 33221 2222 2210 00 001345889999999999
Q ss_pred EEecCCCC----cccHHHHHHHH
Q psy6055 281 ARYDASVE----PSELEPDIVEE 299 (307)
Q Consensus 281 ~Ry~p~~~----P~eLe~dIekL 299 (307)
+.+..... .+++.+.|+.+
T Consensus 202 ~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 202 HVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHh
Confidence 98843222 23455555443
No 45
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.35 E-value=8.1e-07 Score=79.55 Aligned_cols=121 Identities=16% Similarity=0.085 Sum_probs=71.4
Q ss_pred CCcccCCCCCCCeEEEEc----CCCCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecC-CCCCcccee
Q psy6055 149 PDRIDGSRLRGPSHRSVG----TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSG-KGFVPKFDV 218 (307)
Q Consensus 149 G~~vdLS~yKGKVvLVVN----S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg-~~ygv~FPV 218 (307)
...++|++|+||++| ++ +||+.|..|++.|+.+. .+.+.|.+..+ +..+.+ +|++-- .-.+++|||
T Consensus 21 ~~~v~L~d~~Gk~vv-L~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~---a~~~~~~~~~~l~fpl 96 (187)
T PRK10382 21 FIEVTEKDTEGRWSV-FFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK---AWHSSSETIAKIKYAM 96 (187)
T ss_pred ceEEEHHHhCCCeEE-EEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHH---HHHHhhccccCCceeE
Confidence 346777899999765 55 89999999999887554 56667777653 223333 465300 014789999
Q ss_pred ecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCc----ccHHH
Q psy6055 219 FGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEP----SELEP 294 (307)
Q Consensus 219 f~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P----~eLe~ 294 (307)
+. |.++. +.+..+ .+.. ...+. ..+.||||++|+|++.+...... +++.+
T Consensus 97 ls--D~~~~--------ia~~yg----v~~~-----------~~g~~-~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~ 150 (187)
T PRK10382 97 IG--DPTGA--------LTRNFD----NMRE-----------DEGLA-DRATFVVDPQGIIQAIEVTAEGIGRDASDLLR 150 (187)
T ss_pred EE--cCchH--------HHHHcC----CCcc-----------cCCce-eeEEEEECCCCEEEEEEEeCCCCCCCHHHHHH
Confidence 94 42221 222211 1100 00111 25889999999999998554333 34444
Q ss_pred HHHHH
Q psy6055 295 DIVEE 299 (307)
Q Consensus 295 dIekL 299 (307)
.|++|
T Consensus 151 ~l~al 155 (187)
T PRK10382 151 KIKAA 155 (187)
T ss_pred HHHhh
Confidence 44433
No 46
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.35 E-value=1.7e-07 Score=81.55 Aligned_cols=107 Identities=13% Similarity=0.050 Sum_probs=64.6
Q ss_pred CCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhcccCCCCCccCCChhhhccccceeecCCCCCccceeecccCC
Q psy6055 148 GPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVDPISGRGYKLRRYKGKVLLIVHFRVSGKGFVPKFDVFGPGPV 224 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llfPcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv~FPVf~KvdV 224 (307)
.|+.+++++++ ||| |||++|.+++|.|+.++ ++++++..+-+.+ ..-..+||+. .++
T Consensus 43 ~G~~~~l~~~~-----lvnFWAsWCppCr~e~P~L~~l~--~~~~~~Vi~Vs~d-----------~~~~~~fp~~--~~~ 102 (153)
T TIGR02738 43 QGRHANQDDYA-----LVFFYQSTCPYCHQFAPVLKRFS--QQFGLPVYAFSLD-----------GQGLTGFPDP--LPA 102 (153)
T ss_pred cchhhhcCCCE-----EEEEECCCChhHHHHHHHHHHHH--HHcCCcEEEEEeC-----------CCcccccccc--cCC
Confidence 48999999886 467 99999999999998654 2234443221100 0001135543 222
Q ss_pred CCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcE-EEEecCCCCcccHHHHHHHHh
Q psy6055 225 NGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYP-VARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 225 NG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~V-V~Ry~p~~~P~eLe~dIekLL 300 (307)
.+. .+....+. ..|.--++.||||++|++ +.++.+..+.++|++.|+++|
T Consensus 103 ~~~-------~~~~~~~~-------------------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 103 TPE-------VMQTFFPN-------------------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred chH-------HHHHHhcc-------------------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 111 11111100 012333699999999885 557889999999999998876
No 47
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.32 E-value=3.5e-07 Score=74.85 Aligned_cols=38 Identities=11% Similarity=-0.096 Sum_probs=32.5
Q ss_pred ccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc
Q psy6055 145 GIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD 183 (307)
Q Consensus 145 t~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf 183 (307)
..+||+.++|++++||++| || +||+.|.+++|.|+.++
T Consensus 4 ~~~~G~~v~l~~~~gk~vl-l~Fwa~wC~~C~~~~p~l~~~~ 44 (131)
T cd03009 4 LRNDGGKVPVSSLEGKTVG-LYFSASWCPPCRAFTPKLVEFY 44 (131)
T ss_pred cccCCCCccHHHhCCcEEE-EEEECCCChHHHHHhHHHHHHH
Confidence 4589999999999999766 67 99999999999886543
No 48
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.30 E-value=5.4e-07 Score=82.10 Aligned_cols=132 Identities=12% Similarity=-0.036 Sum_probs=73.7
Q ss_pred CCcccCCCCcccC-CCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCC----hhhhccccceeecCCCC
Q psy6055 142 ENSGIGGPDRIDG-SRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRY----KGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 142 ~~ft~ldG~~vdL-S~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs----~~EI~~~l~F~~pg~~y 212 (307)
+.+...+|+ +.+ ++|+||+++|++ +||+.|..|++.|+.++ .+.+.|.++.+- ...-+...++++-..+.
T Consensus 16 F~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~ 94 (215)
T PRK13191 16 MEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKV 94 (215)
T ss_pred CEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCC
Confidence 333446786 556 558999878778 89999999999997654 566667776531 11111111233200135
Q ss_pred CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCC----
Q psy6055 213 VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVE---- 288 (307)
Q Consensus 213 gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~---- 288 (307)
+++|||+. |-++.- .+..+ .+.. + ....=....||||++|+|+..+.....
T Consensus 95 ~i~fPlls--D~~~~i--------a~~yg----v~~~-------~----~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~ 149 (215)
T PRK13191 95 EVPFPIIA--DPMGNV--------AKRLG----MIHA-------E----SSTATVRAVFIVDDKGTVRLILYYPMEIGRN 149 (215)
T ss_pred CCceEEEE--CCchHH--------HHHcC----Cccc-------c----cCCceeEEEEEECCCCEEEEEEecCCCCCCC
Confidence 78999995 333222 11111 1100 0 000112478999999999997643332
Q ss_pred cccHHHHHHHH
Q psy6055 289 PSELEPDIVEE 299 (307)
Q Consensus 289 P~eLe~dIekL 299 (307)
.+++.+.|++|
T Consensus 150 ~~eilr~l~al 160 (215)
T PRK13191 150 IDEILRAIRAL 160 (215)
T ss_pred HHHHHHHHHHh
Confidence 23455555543
No 49
>PRK15000 peroxidase; Provisional
Probab=98.08 E-value=2.2e-06 Score=77.22 Aligned_cols=119 Identities=15% Similarity=0.118 Sum_probs=67.7
Q ss_pred cccCCCC-CCCeEEEEc----CCCCCCcCcchhhhhhc-ccCCCCCccCC---Chhhhccccceee-cCCCC---Cccce
Q psy6055 151 RIDGSRL-RGPSHRSVG----TDHIVVPSRLPSANVVD-PISGRGYKLRR---YKGKVLLIVHFRV-SGKGF---VPKFD 217 (307)
Q Consensus 151 ~vdLS~y-KGKVvLVVN----S~Cg~c~qe~p~L~llf-PcnQFG~QEpg---s~~EI~~~l~F~~-pg~~y---gv~FP 217 (307)
.++|++| +||++| |+ .||..|..|++.|+.++ .+.+.|.+..+ ++.+..+ ++.+ ..... +++||
T Consensus 25 ~~~l~~~~~gk~vv-L~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~--~w~~~~~~~~g~~~i~fp 101 (200)
T PRK15000 25 KFNFKQHTNGKTTV-LFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHN--AWRNTPVDKGGIGPVKYA 101 (200)
T ss_pred eeeHHHHhCCCEEE-EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH--HHHhhHHHhCCccccCce
Confidence 4577777 899766 56 58999999999997554 67777777653 2222211 2221 00122 46899
Q ss_pred eecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc----cHH
Q psy6055 218 VFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS----ELE 293 (307)
Q Consensus 218 Vf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~----eLe 293 (307)
|+. |-++. +-+ . ||.. .+ ...+ .-...||||++|+|+..+.+..... ++.
T Consensus 102 lls--D~~~~----ia~----~-------ygv~------~~--~~g~-~~r~tfiID~~G~I~~~~~~~~~~gr~~~eil 155 (200)
T PRK15000 102 MVA--DVKRE----IQK----A-------YGIE------HP--DEGV-ALRGSFLIDANGIVRHQVVNDLPLGRNIDEML 155 (200)
T ss_pred EEE--CCCcH----HHH----H-------cCCc------cC--CCCc-EEeEEEEECCCCEEEEEEecCCCCCCCHHHHH
Confidence 994 33322 111 1 1100 00 0011 2258899999999999987655443 444
Q ss_pred HHHHH
Q psy6055 294 PDIVE 298 (307)
Q Consensus 294 ~dIek 298 (307)
+.|++
T Consensus 156 r~l~a 160 (200)
T PRK15000 156 RMVDA 160 (200)
T ss_pred HHHHH
Confidence 44444
No 50
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.05 E-value=6.7e-06 Score=73.26 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=69.7
Q ss_pred CCCcccCCCCCCCeEEEEc----CCCCCCcCcchhhhhhc-ccCCCCCccCCC----hhhhccccceee-cCC--CC-Cc
Q psy6055 148 GPDRIDGSRLRGPSHRSVG----TDHIVVPSRLPSANVVD-PISGRGYKLRRY----KGKVLLIVHFRV-SGK--GF-VP 214 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN----S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs----~~EI~~~l~F~~-pg~--~y-gv 214 (307)
+|++++|++|+||++|| + +||..|..+++.|+.++ .+.+.|.++.+- ..+-. ++.. ... .. ++
T Consensus 25 ~~~~v~l~d~~Gk~~lL-~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~---~~~~~~~~~~~~~~~ 100 (199)
T PTZ00253 25 SFKKISLSSYKGKWVVL-FFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHL---QWTLQERKKGGLGTM 100 (199)
T ss_pred CCcEEeHHHHCCCEEEE-EEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH---HHHhChHhhCCcccc
Confidence 55799999999997764 6 57999999988776543 566677776531 11111 1110 000 12 47
Q ss_pred cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc-cHH
Q psy6055 215 KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS-ELE 293 (307)
Q Consensus 215 ~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~-eLe 293 (307)
+||++. |-++.- - +..+ .+.. ...+ -..+.||||++|+|+..+....... .++
T Consensus 101 ~fpll~--D~~~~i----a----~~yg----v~~~-----------~~g~-~~r~~fiID~~G~i~~~~~~~~~~~r~~~ 154 (199)
T PTZ00253 101 AIPMLA--DKTKSI----A----RSYG----VLEE-----------EQGV-AYRGLFIIDPKGMLRQITVNDMPVGRNVE 154 (199)
T ss_pred ccceEE--CcHhHH----H----HHcC----Cccc-----------CCCc-eEEEEEEECCCCEEEEEEecCCCCCCCHH
Confidence 899984 322211 1 1111 1100 0011 1247899999999999886544443 455
Q ss_pred HHHHHHh
Q psy6055 294 PDIVEEL 300 (307)
Q Consensus 294 ~dIekLL 300 (307)
+.++.|.
T Consensus 155 e~l~~l~ 161 (199)
T PTZ00253 155 EVLRLLE 161 (199)
T ss_pred HHHHHHH
Confidence 5554443
No 51
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.68 E-value=4.7e-05 Score=64.86 Aligned_cols=40 Identities=8% Similarity=-0.046 Sum_probs=34.3
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|+--++-+|||++|+++.++.+....++|++.|+++++..
T Consensus 74 V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 74 VDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 4444688999999999999999998899999999998643
No 52
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=97.67 E-value=0.00022 Score=64.90 Aligned_cols=141 Identities=13% Similarity=0.123 Sum_probs=82.1
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCC-CCcCcchhhhhhc-cc---CCCCCcc------C--CChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHI-VVPSRLPSANVVD-PI---SGRGYKL------R--RYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg-~c~qe~p~L~llf-Pc---nQFG~QE------p--gs~~EI~~~l~F 205 (307)
+++++.-+|+.+.+.+++||+.||.- |.|+ .|+.....|..++ .- .+..+|. | ++.+.++ +|
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk---~Y 125 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLK---KY 125 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHH---HH
Confidence 56666789999999999999988655 8995 6777665553322 11 1223332 2 2334444 45
Q ss_pred eecCCCCCccceeecccCCCCCC--CChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGAS--EAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~--ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
+. ..+. |-+ +.+.|.. ...+++.++-. ..+ .......+..+.-+=.-||||++|+++.+|
T Consensus 126 ~~--~~~~---~~~--~~ltg~~~~~~~~~k~~~V~--------~~~---v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~ 187 (207)
T COG1999 126 AE--LNFD---PRW--IGLTGTPEQIEEVAKAYGVF--------YSK---VPLDDSQNYTIDHSAGFYLIDADGRFLGTY 187 (207)
T ss_pred hc--ccCC---CCe--eeeeCCHHHHHHHHHHhcce--------eee---cccCCCCCceeeeeeEEEEECCCCeEEEEe
Confidence 52 1222 222 3334431 12222222211 100 000000122445555679999999999999
Q ss_pred cCCCCcccHHHHHHHHhhh
Q psy6055 284 DASVEPSELEPDIVEELMK 302 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~ 302 (307)
.....|++|.++|+.++++
T Consensus 188 ~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 188 DYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred cCCCChHHHHHHHHHHhhc
Confidence 9999999999999999975
No 53
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.60 E-value=3.4e-05 Score=66.51 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=49.6
Q ss_pred CCCcccCCC-CCCCeEEEEc---CCCCCCcCc-chhhhhhc-ccCCCCCc-cCC---ChhhhccccceeecCCCCCc--c
Q psy6055 148 GPDRIDGSR-LRGPSHRSVG---TDHIVVPSR-LPSANVVD-PISGRGYK-LRR---YKGKVLLIVHFRVSGKGFVP--K 215 (307)
Q Consensus 148 dG~~vdLS~-yKGKVvLVVN---S~Cg~c~qe-~p~L~llf-PcnQFG~Q-Epg---s~~EI~~~l~F~~pg~~ygv--~ 215 (307)
+|+.++|++ ++||++||+. .+|+.|..+ ++.++... .+.+.|.+ +.+ ++.+..+ +|+. ++++ +
T Consensus 17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~--~~~~---~~~~~~~ 91 (155)
T cd03013 17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK--AWGK---ALGAKDK 91 (155)
T ss_pred CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH--HHHH---hhCCCCc
Confidence 389999999 6999878788 799999999 98887554 45666763 543 3333332 6884 7776 8
Q ss_pred ceeec
Q psy6055 216 FDVFG 220 (307)
Q Consensus 216 FPVf~ 220 (307)
|||+.
T Consensus 92 f~lLs 96 (155)
T cd03013 92 IRFLA 96 (155)
T ss_pred EEEEE
Confidence 99995
No 54
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.39 E-value=0.00031 Score=56.09 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=24.8
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHH
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIek 298 (307)
|+.-+| |++.++|+++.++.+ ..+.+|++.|.+
T Consensus 69 V~~~Pt-~~~~~~G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 69 IIEVPH-FLFYKDGEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred CCcCCE-EEEEeCCeEEEEEeC-CCHHHHHHHHHh
Confidence 344456 777799999999988 567777777653
No 55
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.97 E-value=0.00028 Score=62.01 Aligned_cols=127 Identities=16% Similarity=0.145 Sum_probs=66.0
Q ss_pred CCCCCcccCCCCcccCCCCCCCeEEEEc---CCCC-CCcCcchhhhhhc---ccCCCCCcc------C--CChhhhcccc
Q psy6055 139 ASPENSGIGGPDRIDGSRLRGPSHRSVG---TDHI-VVPSRLPSANVVD---PISGRGYKL------R--RYKGKVLLIV 203 (307)
Q Consensus 139 ~~~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg-~c~qe~p~L~llf---PcnQFG~QE------p--gs~~EI~~~l 203 (307)
..++.+++.+|+.+++++++||++| |+ |.|+ .|+..+..|..++ +-++...|. | ++.+.++
T Consensus 32 ~~~f~L~d~~G~~~~~~~~~Gk~~l-v~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~--- 107 (174)
T PF02630_consen 32 VPDFTLTDQDGKTVTLDDLKGKWVL-VFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK--- 107 (174)
T ss_dssp SST-EEEETTSSEEEGGGGTTSEEE-EEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH---
T ss_pred CCCcEEEcCCCCEecHHHhCCCeEE-EEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH---
Confidence 3445555678999999999999877 56 8994 5554443443222 111222332 3 2345566
Q ss_pred ceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 204 HFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 204 ~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
+|++ .|+.+|.-.. |... .+ +-+.+... .+.. .....++.....|.-.-.-||||++|++++.|
T Consensus 108 ~Y~~---~~~~~~~~lt-----g~~~-~i-~~l~~~~~----v~~~--~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 108 KYAK---KFGPDFIGLT-----GSRE-EI-EELAKQFG----VYYE--KVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp HHHH---CHTTTCEEEE-----EEHH-HH-HHHHHHCT----HCEE--EEESSSTTSCEEEEESSEEEEE-TTSEEEEEE
T ss_pred HHHH---hcCCCcceeE-----eCHH-HH-HHHHHHHH----hhhc--ccccccCCCCceEecccEEEEEcCCCcEEEEE
Confidence 6884 6777665331 2211 11 11222221 1110 00011112222455555789999999999999
Q ss_pred cC
Q psy6055 284 DA 285 (307)
Q Consensus 284 ~p 285 (307)
..
T Consensus 172 ~~ 173 (174)
T PF02630_consen 172 NL 173 (174)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 56
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.86 E-value=0.0014 Score=53.32 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=33.7
Q ss_pred cccceEEEECCC-CcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 265 REPYEKFLVGAR-GYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 265 kWNFTKFLIDrd-G~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
+--++-+++|++ |+++.++.+..+.+++++.|++++.+.
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 334689999999 899999999999999999999988753
No 57
>KOG0910|consensus
Probab=96.83 E-value=0.0011 Score=58.47 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=30.7
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
|+--+| +||=++|+++.++.+..+.+.|++.|+++|.
T Consensus 113 I~avPt-vlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 113 ISAVPT-VLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeeeeE-EEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 444445 4555899999999999999999999999985
No 58
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.59 E-value=0.0016 Score=50.03 Aligned_cols=86 Identities=8% Similarity=-0.123 Sum_probs=50.0
Q ss_pred CCeEEEEc--CCCCCCcCcchhhhhhc-ccC-CCCCccC-----CChhhhccccceeecCCCCCccceeecccCCCCCCC
Q psy6055 159 GPSHRSVG--TDHIVVPSRLPSANVVD-PIS-GRGYKLR-----RYKGKVLLIVHFRVSGKGFVPKFDVFGPGPVNGASE 229 (307)
Q Consensus 159 GKVvLVVN--S~Cg~c~qe~p~L~llf-Pcn-QFG~QEp-----gs~~EI~~~l~F~~pg~~ygv~FPVf~KvdVNG~~a 229 (307)
||++||.= +||+.|..++|.|..++ .++ +.+++.. .+.++.+ +|.+ +++.+++.+.-.+ .
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~---~~~~---~~~~~~~~~~~~~---~-- 69 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWK---KFLK---KNNFPWYNVPFDD---D-- 69 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHH---HHHH---TCTTSSEEEETTT---H--
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHH---HHHH---hcCCCceEEeeCc---c--
Confidence 78877433 89999999999987654 455 3334432 2345555 5664 4544444432111 1
Q ss_pred ChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcE
Q psy6055 230 APLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYP 279 (307)
Q Consensus 230 hPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~V 279 (307)
-...|.+.. .|..-++-+|||++|+|
T Consensus 70 --~~~~l~~~~----------------------~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 70 --NNSELLKKY----------------------GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp --HHHHHHHHT----------------------T-TSSSEEEEEETTSBE
T ss_pred --hHHHHHHHC----------------------CCCcCCEEEEECCCCCC
Confidence 122233332 35556799999999987
No 59
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.56 E-value=0.0031 Score=59.62 Aligned_cols=107 Identities=12% Similarity=-0.012 Sum_probs=64.5
Q ss_pred CCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhcccCCCCCccCCChhhhccccceeecCCCCCccceeecccCC
Q psy6055 148 GPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVDPISGRGYKLRRYKGKVLLIVHFRVSGKGFVPKFDVFGPGPV 224 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llfPcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv~FPVf~KvdV 224 (307)
..+...|++++||++| || +||++|.+++|.|+.+. +++|+++..-+-+-. -...||.+ +.
T Consensus 155 ~~~~~~l~~l~~k~~L-v~F~AswCp~C~~~~P~L~~la--~~yg~~Vi~VsvD~~-----------~~~~fp~~---~~ 217 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGL-FFFFKSDCPYCHQQAPILQAFE--DRYGIEVLPVSVDGG-----------PLPGFPNA---RP 217 (271)
T ss_pred HHHHHHHHHhcCCeEE-EEEECCCCccHHHHhHHHHHHH--HHcCcEEEEEeCCCC-----------ccccCCcc---cC
Confidence 3556889999999877 56 99999999999887553 223444321110000 00124443 11
Q ss_pred CCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCC-CcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 225 NGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGAR-GYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 225 NG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrd-G~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
+ . . +... | .|+--++-||||++ |++.....+..+.++|++.|..+..
T Consensus 218 d---~-~----la~~-------~---------------gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 218 D---A-G----QAQQ-------L---------------KIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred C---H-H----HHHH-------c---------------CCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 1 0 0 1111 1 23444699999995 5555556688899999999887765
No 60
>PRK10996 thioredoxin 2; Provisional
Probab=96.13 E-value=0.0041 Score=52.66 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.2
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
++ ++|-++|+++.++.+..+.++|++.|+++|
T Consensus 108 Pt-lii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 108 PT-IMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CE-EEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 45 555579999999999988888998888764
No 61
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.01 Score=54.42 Aligned_cols=132 Identities=13% Similarity=0.036 Sum_probs=72.4
Q ss_pred CCcccC-CCC---cccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCC---hhhhccccceee-cC
Q psy6055 142 ENSGIG-GPD---RIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRY---KGKVLLIVHFRV-SG 209 (307)
Q Consensus 142 ~~ft~l-dG~---~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs---~~EI~~~l~F~~-pg 209 (307)
+..+.. .|+ +|+|++|.||.+++.- ---.-|..|+..++-.+ .+.+.|.++.+- ...... ++.. +.
T Consensus 12 F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~--aW~~~~~ 89 (194)
T COG0450 12 FTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHK--AWKATIR 89 (194)
T ss_pred cEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHH--HHHhcHH
Confidence 333344 664 9999999999776555 23467888887776655 467778777542 111110 1211 00
Q ss_pred CCCC---ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC
Q psy6055 210 KGFV---PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 210 ~~yg---v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
+..+ ++|||.+ |.++.-+ +..+ .+. |.....++ ..||||++|+|.....-.
T Consensus 90 ~~~gi~~i~~Pmia--D~~~~vs--------~~yg----vl~---------~~~g~a~R---~~FIIDp~g~ir~~~v~~ 143 (194)
T COG0450 90 EAGGIGKIKFPMIA--DPKGEIA--------RAYG----VLH---------PEEGLALR---GTFIIDPDGVIRHILVNP 143 (194)
T ss_pred hcCCccceecceEE--cCchhHH--------HHcC----Ccc---------cCCCccee---EEEEECCCCeEEEEEEec
Confidence 1333 8999995 4333322 2221 110 00000111 579999999996654322
Q ss_pred C----CcccHHHHHHHHhh
Q psy6055 287 V----EPSELEPDIVEELM 301 (307)
Q Consensus 287 ~----~P~eLe~dIekLL~ 301 (307)
. +.+++.+.|+.|--
T Consensus 144 ~~iGRn~dEilR~idAlq~ 162 (194)
T COG0450 144 LTIGRNVDEILRVIDALQF 162 (194)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 2 34567777766643
No 62
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=95.98 E-value=0.0056 Score=48.93 Aligned_cols=27 Identities=19% Similarity=-0.075 Sum_probs=22.3
Q ss_pred CCCCCCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 155 SRLRGPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 155 S~yKGKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
++++||++| |+ +||++|.+.+|.+..+
T Consensus 14 ~~~~g~~vl-V~F~a~WC~~C~~~~p~l~~l 43 (100)
T cd02999 14 AFNREDYTA-VLFYASWCPFSASFRPHFNAL 43 (100)
T ss_pred HhcCCCEEE-EEEECCCCHHHHhHhHHHHHH
Confidence 568999877 66 8999999999887654
No 63
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.61 E-value=0.0058 Score=48.55 Aligned_cols=34 Identities=24% Similarity=0.135 Sum_probs=26.6
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHH
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEE 299 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekL 299 (307)
|+.-|+ |+|-++|+++.+..+. ++++|++.|++|
T Consensus 69 v~~~Pt-~~~~~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 69 GKCEPT-FLFYKNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred CCcCcE-EEEEECCEEEEEEecC-ChHHHHHHHhhC
Confidence 455565 7788999999999884 888888888764
No 64
>KOG2792|consensus
Probab=95.51 E-value=0.031 Score=53.65 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=78.9
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCC-CCcCcchhhhhhc-cc-CCCCCc----------cCCChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHI-VVPSRLPSANVVD-PI-SGRGYK----------LRRYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg-~c~qe~p~L~llf-Pc-nQFG~Q----------Epgs~~EI~~~l~F 205 (307)
|+++.+-+|+.+.=.+|+||++||-- |.|+ -|+.|+.-|..+- .- +.-|.. |-++.+.++ +|
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~---eY 197 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVA---EY 197 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHH---HH
Confidence 45555678999999999999988766 9996 6787775553221 00 001111 112344555 46
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCC-CCC-CC--CCcccceEEEECCCCcEEE
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYE-PLR-NS--DVREPYEKFLVGARGYPVA 281 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~-p~~-~~--~IkWNFTKFLIDrdG~VV~ 281 (307)
+. .|.... +-.+|. +...|..+.. | +.|+-. |-. +. =|.-.=-.||||++|+.|.
T Consensus 198 ~~---eF~pkl-----lGLTGT-----~eqvk~vak~----y----RVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd 256 (280)
T KOG2792|consen 198 VS---EFHPKL-----LGLTGT-----TEQVKQVAKK----Y----RVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVD 256 (280)
T ss_pred HH---hcChhh-----hcccCC-----HHHHHHHHHH----h----EEeeccCCCCCCCCeeeeeeEEEEEECCCcceeh
Confidence 63 454321 222233 2233333221 0 222222 211 01 1333335699999999999
Q ss_pred EecCCCCcccHHHHHHHHhh
Q psy6055 282 RYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 282 Ry~p~~~P~eLe~dIekLL~ 301 (307)
.|+-+-+++++.+.|.+.++
T Consensus 257 ~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 257 YYGRNYDADELADSILKHVA 276 (280)
T ss_pred hhcccCCHHHHHHHHHHHHH
Confidence 99999999999988887654
No 65
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.34 E-value=0.029 Score=45.36 Aligned_cols=35 Identities=9% Similarity=-0.081 Sum_probs=27.5
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHH
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEE 299 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekL 299 (307)
|+.-++-+++ ++|+++.++.+..+.++|.+.|++|
T Consensus 77 V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 77 AHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred CccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 5555687777 5999999999988888888777654
No 66
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.29 E-value=0.018 Score=45.22 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=27.5
Q ss_pred CcccceEEEECC-CCcEEEEecCCCCcccHHHHHH
Q psy6055 264 VREPYEKFLVGA-RGYPVARYDASVEPSELEPDIV 297 (307)
Q Consensus 264 IkWNFTKFLIDr-dG~VV~Ry~p~~~P~eLe~dIe 297 (307)
|.--++-+++++ +|+++.++.+..+.++|++.|+
T Consensus 70 i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 70 VFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 334468899999 9999999999999888777653
No 67
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.24 E-value=0.014 Score=60.64 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=30.3
Q ss_pred CcccceEEEECCCCcE--EEEecCCCCcccHHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGYP--VARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~V--V~Ry~p~~~P~eLe~dIekLL 300 (307)
|..-++-+++|+||++ +.|+.+..+++++++.|+++.
T Consensus 532 v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 532 VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 4445688999999999 478899999999988888753
No 68
>PRK09381 trxA thioredoxin; Provisional
Probab=95.08 E-value=0.039 Score=43.57 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=26.6
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
++-+++ ++|+++.++.+..+.++|++.|++.|+
T Consensus 77 Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 77 PTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred CEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 454555 799999999999888889988887763
No 69
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=94.92 E-value=0.04 Score=42.31 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=23.0
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDI 296 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dI 296 (307)
++-++++ +|+++.++.+..+.++|+..|
T Consensus 68 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 68 PTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred CEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 5777776 999999999988888877765
No 70
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.91 E-value=0.034 Score=44.90 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=30.6
Q ss_pred cceEEEECC-CCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 267 PYEKFLVGA-RGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 267 NFTKFLIDr-dG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
-|+-.+||+ +|+++.++.+..+++++...+++.+.
T Consensus 77 ~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 77 YPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred CCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 357789999 89999999999999999888887664
No 71
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=94.17 E-value=0.028 Score=42.90 Aligned_cols=35 Identities=9% Similarity=-0.040 Sum_probs=27.0
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHH
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEE 299 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekL 299 (307)
|+.-++-|+++.++. +.+|.+..+.++|+..|++.
T Consensus 67 i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 67 VSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 444567788988877 77888888888888888764
No 72
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.23 E-value=0.2 Score=38.89 Aligned_cols=33 Identities=9% Similarity=-0.127 Sum_probs=22.8
Q ss_pred CCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 147 GGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 147 ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
+++++++ +..+|++ | |+ +||++|.+..|.++.+
T Consensus 6 l~~~~f~-~~~~~~~-l-v~f~a~wC~~C~~~~p~~~~l 41 (101)
T cd02994 6 LTDSNWT-LVLEGEW-M-IEFYAPWCPACQQLQPEWEEF 41 (101)
T ss_pred cChhhHH-HHhCCCE-E-EEEECCCCHHHHHHhHHHHHH
Confidence 4555555 3457774 3 67 8999999988877644
No 73
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=92.20 E-value=0.083 Score=41.65 Aligned_cols=29 Identities=7% Similarity=-0.066 Sum_probs=19.5
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIek 298 (307)
++-+|+ ++| ++.+|.+..+.++|...|++
T Consensus 74 Pt~~l~-~~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 74 PTIKLL-KGD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred cEEEEE-cCC-CceeecCCCCHHHHHHHHHh
Confidence 576777 345 45678887777777766654
No 74
>PHA02278 thioredoxin-like protein
Probab=91.71 E-value=0.44 Score=38.82 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCcccceEEEECCCCcEEEEecCCCCcccHHH
Q psy6055 263 DVREPYEKFLVGARGYPVARYDASVEPSELEP 294 (307)
Q Consensus 263 ~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~ 294 (307)
.|+.-+| |++=++|+.+.++.+..+.++|++
T Consensus 69 ~I~~iPT-~i~fk~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 69 DIMSTPV-LIGYKDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred CCccccE-EEEEECCEEEEEEeCCCCHHHHHh
Confidence 3556666 777789999999999888776653
No 75
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=91.58 E-value=0.074 Score=40.89 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=21.1
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPD 295 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~d 295 (307)
++ +++.++|+++.+|.+..++++|.+.
T Consensus 77 Pt-~~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 77 PT-FKYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred cE-EEEEeCCCeeEEeCCCCCHHHHHhh
Confidence 34 6677899999999998887776543
No 76
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=90.97 E-value=0.36 Score=37.62 Aligned_cols=28 Identities=14% Similarity=-0.100 Sum_probs=21.8
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDI 296 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dI 296 (307)
++-+|+ ++|+++.++.+..+.++|.+.|
T Consensus 69 Pt~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 69 PTVQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred cEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 466777 5899999999988887776655
No 77
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=90.84 E-value=0.07 Score=44.07 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=19.7
Q ss_pred cccCCCCCCCeEEEEc---CCCCCCcCcchh
Q psy6055 151 RIDGSRLRGPSHRSVG---TDHIVVPSRLPS 178 (307)
Q Consensus 151 ~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~ 178 (307)
.+...+.+||++| |+ +||++|....|.
T Consensus 11 al~~A~~~~kpVl-V~F~a~WC~~C~~~~~~ 40 (117)
T cd02959 11 GIKEAKDSGKPLM-LLIHKTWCGACKALKPK 40 (117)
T ss_pred HHHHHHHcCCcEE-EEEeCCcCHHHHHHHHH
Confidence 3455667899877 56 899999876654
No 78
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=90.30 E-value=0.91 Score=34.18 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=26.3
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
|+.-++-+++ ++|+++.++.+..+.++|...|++.|
T Consensus 66 v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 66 IRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 3334565666 78999999988888788888877653
No 79
>KOG0907|consensus
Probab=89.62 E-value=0.55 Score=38.75 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=19.1
Q ss_pred EEECCCCcEEEEecCCCCcccHHHHHHH
Q psy6055 271 FLVGARGYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 271 FLIDrdG~VV~Ry~p~~~P~eLe~dIek 298 (307)
|++=++|+.+.++.|.... +|++.|.+
T Consensus 78 f~f~k~g~~~~~~vGa~~~-~l~~~i~~ 104 (106)
T KOG0907|consen 78 FVFYKGGEEVDEVVGANKA-ELEKKIAK 104 (106)
T ss_pred EEEEECCEEEEEEecCCHH-HHHHHHHh
Confidence 5555999999999875444 66666654
No 80
>PTZ00102 disulphide isomerase; Provisional
Probab=89.47 E-value=0.58 Score=46.07 Aligned_cols=39 Identities=8% Similarity=-0.030 Sum_probs=32.4
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++-++++.++++..+|.+..+.++|.+.|++.+..
T Consensus 429 v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 429 WSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred CcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 444578899998888878999999999999999988764
No 81
>KOG0855|consensus
Probab=89.43 E-value=1.7 Score=39.87 Aligned_cols=161 Identities=11% Similarity=0.066 Sum_probs=82.4
Q ss_pred eecCCCCcccccccccccceeeeceeeeeeeeeccccCCCCCC----CCCCCCCccc--CCCCcccCCCCCCCeEEEEc-
Q psy6055 94 VHSSPMCPSCSAATCFSNAERVGSRRVSRMERFGGPCGGRSQS----TSASPENSGI--GGPDRIDGSRLRGPSHRSVG- 166 (307)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~~~ft~--ldG~~vdLS~yKGKVvLVVN- 166 (307)
--++|--|.-++-+-|-+.++..+.-++-. |+.| ..++.++|++ -||+.|+|.++.|+..+|+-
T Consensus 27 p~t~p~vpkK~~ks~~~~~~~~~~~~~s~~---------Ssds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~ 97 (211)
T KOG0855|consen 27 PKTQPSVPKKSSKSNFFGSTLTHSSYISPV---------SSDSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFF 97 (211)
T ss_pred ccccccccccccccCcccccccceeeeccc---------cccceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEE
Confidence 344555555555555555555444333110 1111 2455566665 48999999999999333333
Q ss_pred ----C-------CCCCCcCcchhhhhhcccCCCCCccC---CChhhhccccceeecCCCCCccceeecccCCCCCCCChh
Q psy6055 167 ----T-------DHIVVPSRLPSANVVDPISGRGYKLR---RYKGKVLLIVHFRVSGKGFVPKFDVFGPGPVNGASEAPL 232 (307)
Q Consensus 167 ----S-------~Cg~c~qe~p~L~llfPcnQFG~QEp---gs~~EI~~~l~F~~pg~~ygv~FPVf~KvdVNG~~ahPl 232 (307)
+ .||+-+ .|+.++. -|.++. +++..-+. +|.. ++++.|-++. |-. ..+
T Consensus 98 YP~asTPGCTkQaCgFRD-nY~k~kk------a~aeV~GlS~D~s~sqK--aF~s---KqnlPYhLLS--Dpk----~e~ 159 (211)
T KOG0855|consen 98 YPAASTPGCTKQACGFRD-NYEKFKK------AGAEVIGLSGDDSASQK--AFAS---KQNLPYHLLS--DPK----NEV 159 (211)
T ss_pred eccCCCCCcccccccccc-cHHHHhh------cCceEEeeccCchHHHH--Hhhh---hccCCeeeec--Ccc----hhH
Confidence 2 233322 2223322 223332 23222222 5774 8888898883 211 112
Q ss_pred HHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc-HHHHHHHHh
Q psy6055 233 FTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE-LEPDIVEEL 300 (307)
Q Consensus 233 yk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e-Le~dIekLL 300 (307)
-+-|-.... .||. . .++ ..|++|+.|.+-..+.-.+.|+. +.+..+.++
T Consensus 160 ik~lGa~k~----p~gg-------~-----~~R---sh~if~kg~~k~~ik~~~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 160 IKDLGAPKD----PFGG-------L-----PGR---SHYIFDKGGVKQLIKNNQISPEVSVDEALKFLK 209 (211)
T ss_pred HHHhCCCCC----CCCC-------c-----ccc---eEEEEecCCeEEEEEecccCccccHHHHHHHHh
Confidence 222211110 1221 0 111 56899999988888888888874 655555544
No 82
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=89.03 E-value=0.68 Score=39.90 Aligned_cols=18 Identities=11% Similarity=-0.105 Sum_probs=15.9
Q ss_pred ceEEEECCCCcEEEEecC
Q psy6055 268 YEKFLVGARGYPVARYDA 285 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p 285 (307)
++-+++|++|+++.+..+
T Consensus 81 PtivFld~~g~vi~~i~G 98 (130)
T cd02960 81 PRIMFVDPSLTVRADITG 98 (130)
T ss_pred CeEEEECCCCCCcccccc
Confidence 588999999999988866
No 83
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=88.82 E-value=0.48 Score=37.21 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=25.7
Q ss_pred CCcccceEEEECCCCcEEEEecCCCCcccHHHH
Q psy6055 263 DVREPYEKFLVGARGYPVARYDASVEPSELEPD 295 (307)
Q Consensus 263 ~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~d 295 (307)
.|.+.++-+++|++|+++.++.|-.++++|.+.
T Consensus 79 ~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~ 111 (112)
T PF13098_consen 79 GVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKM 111 (112)
T ss_dssp T--SSSEEEECTTTSCEEEEEESS--HHHHHHH
T ss_pred CCCccCEEEEEcCCCCEEEEecCCCCHHHHHhh
Confidence 367778999999999999999999999888764
No 84
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=87.89 E-value=0.28 Score=39.26 Aligned_cols=22 Identities=18% Similarity=-0.097 Sum_probs=17.0
Q ss_pred CCCeEEEEc---CCCCCCcCcchhhh
Q psy6055 158 RGPSHRSVG---TDHIVVPSRLPSAN 180 (307)
Q Consensus 158 KGKVvLVVN---S~Cg~c~qe~p~L~ 180 (307)
+||++| |+ +||++|.+..|.+.
T Consensus 20 ~~k~vl-v~f~a~wC~~C~~~~~~~~ 44 (109)
T cd02993 20 RNQSTL-VVLYAPWCPFCQAMEASYE 44 (109)
T ss_pred cCCCEE-EEEECCCCHHHHHHhHHHH
Confidence 578766 55 89999988877664
No 85
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=87.66 E-value=0.6 Score=36.36 Aligned_cols=34 Identities=12% Similarity=-0.042 Sum_probs=22.5
Q ss_pred CCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhh
Q psy6055 147 GGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANV 181 (307)
Q Consensus 147 ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~l 181 (307)
++++.++-...+++++| |+ +||+.|.+..|.+..
T Consensus 6 l~~~~f~~~v~~~~~~~-v~f~a~wC~~C~~~~p~~~~ 42 (101)
T cd03003 6 LDRGDFDAAVNSGEIWF-VNFYSPRCSHCHDLAPTWRE 42 (101)
T ss_pred cCHhhHHHHhcCCCeEE-EEEECCCChHHHHhHHHHHH
Confidence 45554444444667666 55 899999988876653
No 86
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=87.55 E-value=0.57 Score=35.87 Aligned_cols=31 Identities=23% Similarity=0.249 Sum_probs=22.1
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHH
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPD 295 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~d 295 (307)
|+.-++-+++ ++|+++.+|.+..+.++|++.
T Consensus 71 v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~ 101 (102)
T cd03005 71 VRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF 101 (102)
T ss_pred CCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence 4444566666 789999999998876666543
No 87
>KOG2501|consensus
Probab=87.26 E-value=0.27 Score=43.93 Aligned_cols=37 Identities=11% Similarity=-0.154 Sum_probs=29.6
Q ss_pred cCCCCcccCC-CCCCCeEEEEc--CCCCCCcCcchhhhhh
Q psy6055 146 IGGPDRIDGS-RLRGPSHRSVG--TDHIVVPSRLPSANVV 182 (307)
Q Consensus 146 ~ldG~~vdLS-~yKGKVvLVVN--S~Cg~c~qe~p~L~ll 182 (307)
..+|..+..+ .++||++.+.- .||++|.+.=|.|.-.
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~f 58 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDF 58 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHH
Confidence 3688888887 89999877666 7999999888877543
No 88
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=87.14 E-value=1.2 Score=41.40 Aligned_cols=37 Identities=11% Similarity=0.027 Sum_probs=29.1
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
--+|-++++ +|+++.++.+..+.++|.+.|++.+.+.
T Consensus 106 ~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred cCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 335777776 7999998888888899998888877543
No 89
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=86.97 E-value=0.56 Score=36.54 Aligned_cols=28 Identities=7% Similarity=-0.103 Sum_probs=19.8
Q ss_pred ceEEEECCCCcEEEEecCCCC-cccHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVE-PSELEPD 295 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~-P~eLe~d 295 (307)
++-++++.+|+.+.+|.+..+ .++|.+.
T Consensus 75 Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~ 103 (104)
T cd03004 75 PTIRLYPGNASKYHSYNGWHRDADSILEF 103 (104)
T ss_pred cEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence 466777666689999998765 6666543
No 90
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=86.85 E-value=1.4 Score=38.40 Aligned_cols=36 Identities=3% Similarity=-0.182 Sum_probs=25.5
Q ss_pred ceEEEECCCCc-EEEEecC--------CCCcccHHHHHHHHhhhh
Q psy6055 268 YEKFLVGARGY-PVARYDA--------SVEPSELEPDIVEELMKR 303 (307)
Q Consensus 268 FTKFLIDrdG~-VV~Ry~p--------~~~P~eLe~dIekLL~~~ 303 (307)
++.+++=++|+ .+.+..| ..+.++|++.|+.++..+
T Consensus 79 ~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 79 CTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred CcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 45565667888 7888877 355567888888877644
No 91
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=85.33 E-value=0.63 Score=44.10 Aligned_cols=118 Identities=7% Similarity=-0.012 Sum_probs=63.4
Q ss_pred CCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC--------CChhhhccccceeecCCCCCcc
Q psy6055 147 GGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR--------RYKGKVLLIVHFRVSGKGFVPK 215 (307)
Q Consensus 147 ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp--------gs~~EI~~~l~F~~pg~~ygv~ 215 (307)
|+| .-.|.+.+|+|+||.= .+|.+|......|..+. ...+.|+.++ +...+.+. ...+ .+....
T Consensus 15 i~~-~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~--~~l~--~r~~~~ 89 (238)
T PF04592_consen 15 IGG-QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY--WELK--RRVSEH 89 (238)
T ss_pred ECC-chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH--HHHH--HhCCCC
Confidence 444 7789999999887554 89999965543343221 2222232211 11122210 0111 233445
Q ss_pred ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc---H
Q psy6055 216 FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE---L 292 (307)
Q Consensus 216 FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e---L 292 (307)
|||+.. -...-.+|.-|.-... -=|++||-|++++...-..+... +
T Consensus 90 ipVyqq----~~~q~dvW~~L~G~kd---------------------------D~~iyDRCGrL~~~i~~P~S~l~~~~v 138 (238)
T PF04592_consen 90 IPVYQQ----DENQPDVWELLNGSKD---------------------------DFLIYDRCGRLTYHIPLPYSFLQFPYV 138 (238)
T ss_pred CceecC----CccccCHHHHhCCCcC---------------------------cEEEEeccCcEEEEecCcHHHhcCHHH
Confidence 888831 1233456766543321 23789999999988765444432 6
Q ss_pred HHHHHHHh
Q psy6055 293 EPDIVEEL 300 (307)
Q Consensus 293 e~dIekLL 300 (307)
++.|+...
T Consensus 139 e~Ai~~ty 146 (238)
T PF04592_consen 139 EAAIKSTY 146 (238)
T ss_pred HHHHHHHH
Confidence 66666543
No 92
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=84.23 E-value=0.95 Score=37.84 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=32.5
Q ss_pred cceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 267 PYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 267 NFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
+|+-+||++||.|-.||...+++++|-+.|.++-...
T Consensus 79 ~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~MPmRq 115 (118)
T PF13778_consen 79 GFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAMPMRQ 115 (118)
T ss_pred ceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCCccch
Confidence 4899999999999999999999999999998875443
No 93
>smart00594 UAS UAS domain.
Probab=84.10 E-value=0.72 Score=38.06 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=23.4
Q ss_pred ceEEEECCCC-----cEEEEecCCCCcccHHHHH
Q psy6055 268 YEKFLVGARG-----YPVARYDASVEPSELEPDI 296 (307)
Q Consensus 268 FTKFLIDrdG-----~VV~Ry~p~~~P~eLe~dI 296 (307)
|+-.+||++| +++.++.+..++++|...+
T Consensus 88 P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 88 PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 3667889998 6899999999999876543
No 94
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=83.71 E-value=1.4 Score=37.08 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=19.9
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccH
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSEL 292 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eL 292 (307)
|+.-+| |++=++|+.+.+..+..+.++|
T Consensus 66 V~~iPT-f~~fk~G~~v~~~~G~~~~~~~ 93 (114)
T cd02954 66 LYDPPT-VMFFFRNKHMKIDLGTGNNNKI 93 (114)
T ss_pred CCCCCE-EEEEECCEEEEEEcCCCCCceE
Confidence 333455 5666899999999887777654
No 95
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=83.62 E-value=0.7 Score=35.01 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=25.1
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIek 298 (307)
++ +++=++|+.+.+|.+..+.++|++.|++
T Consensus 73 Pt-~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 73 PT-IIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp SE-EEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred CE-EEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 35 5555889999999999999999999875
No 96
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=83.22 E-value=1.5 Score=32.37 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=20.4
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
++ ++| +|+. ++.+..++++|++.|+++|
T Consensus 55 Pt-~~~--~g~~--~~~G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 55 PA-IVI--NGDV--EFIGAPTKEELVEAIKKRL 82 (82)
T ss_pred CE-EEE--CCEE--EEecCCCHHHHHHHHHhhC
Confidence 45 456 6663 7778888888988888765
No 97
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.05 E-value=0.97 Score=44.25 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=33.3
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKREE 305 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~~ 305 (307)
|+==++-|++ +||++|.-|.+-...++|++.|.+++...+|
T Consensus 95 iqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~~~~e 135 (304)
T COG3118 95 VQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLPAEEE 135 (304)
T ss_pred cCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcChHHH
Confidence 3344577887 8999999999988888999999999887433
No 98
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=82.76 E-value=1.2 Score=37.51 Aligned_cols=31 Identities=10% Similarity=0.203 Sum_probs=25.7
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
+|-.|+ ++|+++. |.+..+.++|...|++++
T Consensus 89 PTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 464555 7999998 999999999999999886
No 99
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=82.63 E-value=3 Score=32.43 Aligned_cols=33 Identities=9% Similarity=0.005 Sum_probs=23.1
Q ss_pred CcccceEEEECCCC----cEEEEecCCCCcccHHHHH
Q psy6055 264 VREPYEKFLVGARG----YPVARYDASVEPSELEPDI 296 (307)
Q Consensus 264 IkWNFTKFLIDrdG----~VV~Ry~p~~~P~eLe~dI 296 (307)
|+--++-+++++.+ .+...|.+..+.++|...|
T Consensus 72 i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 72 VQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 44446878888776 4677888877777776655
No 100
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=81.82 E-value=2.6 Score=35.57 Aligned_cols=19 Identities=5% Similarity=-0.246 Sum_probs=15.3
Q ss_pred ccceEEEECCCCcEEEEec
Q psy6055 266 EPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~ 284 (307)
.-++-.++|++|+++.+..
T Consensus 80 G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 80 GWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred CCCEEEEECCCCCEEeeee
Confidence 3468899999999997663
No 101
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=80.72 E-value=1.9 Score=31.93 Aligned_cols=28 Identities=11% Similarity=-0.046 Sum_probs=22.2
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPD 295 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~d 295 (307)
++-++++++|+.+.+|.+..+.++|.+.
T Consensus 73 Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 73 PTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred CEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 5888998888899999888777766543
No 102
>PTZ00051 thioredoxin; Provisional
Probab=79.72 E-value=1.3 Score=33.93 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=17.9
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELE 293 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe 293 (307)
++ ++|.++|+++.++.+. .+++|+
T Consensus 73 Pt-~~~~~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 73 PT-FKVFKNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred eE-EEEEeCCeEEEEEeCC-CHHHhh
Confidence 35 7788999999999884 555443
No 103
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=77.89 E-value=2.5 Score=34.44 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=24.5
Q ss_pred CcccceEEEECCCCcEEE--EecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVA--RYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~--Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++-+|.+ +|.... +|.+-..-.++.+.|+.++..
T Consensus 73 v~~vPt~~i~~-~g~~~~~~~~~G~~~~~el~~~i~~i~~~ 112 (113)
T cd02975 73 VERVPTTIFLQ-DGGKDGGIRYYGLPAGYEFASLIEDIVRV 112 (113)
T ss_pred CCcCCEEEEEe-CCeecceEEEEecCchHHHHHHHHHHHhc
Confidence 44556645544 433322 677777777899999998863
No 104
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=77.08 E-value=2.6 Score=35.12 Aligned_cols=22 Identities=18% Similarity=0.027 Sum_probs=16.5
Q ss_pred CcccceEEEECCCCcEEEEecCC
Q psy6055 264 VREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
|.+-+| |++=++|+.+.++.+.
T Consensus 88 i~~~PT-~v~~k~Gk~v~~~~G~ 109 (122)
T TIGR01295 88 FMGTPT-FVHITDGKQVSVRCGS 109 (122)
T ss_pred CCCCCE-EEEEeCCeEEEEEeCC
Confidence 444556 6677999999999775
No 105
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=73.91 E-value=3.9 Score=31.05 Aligned_cols=28 Identities=7% Similarity=-0.007 Sum_probs=20.9
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPD 295 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~d 295 (307)
++-++++.+|+...+|.+..+.++|.+.
T Consensus 77 P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred CEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 4667888877888888888777766554
No 106
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=72.95 E-value=2.6 Score=30.62 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=23.3
Q ss_pred cccCCCCCCCeEEEE--cCCCCCCcCcchhhhhh
Q psy6055 151 RIDGSRLRGPSHRSV--GTDHIVVPSRLPSANVV 182 (307)
Q Consensus 151 ~vdLS~yKGKVvLVV--NS~Cg~c~qe~p~L~ll 182 (307)
...++.+++++++|. .+||++|...+|.+..+
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHH
Confidence 555566668877744 38999999998877544
No 107
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=68.63 E-value=4.2 Score=30.88 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=17.6
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDI 296 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dI 296 (307)
++ |+|-++|+++.++.+. .+++|.+.|
T Consensus 70 Pt-~~~~~~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 70 PT-FVFFRNGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred cE-EEEEECCEEEEEEeCC-CHHHHHHhh
Confidence 46 4444689999999875 455555444
No 108
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=67.61 E-value=6.8 Score=29.89 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=18.1
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDI 296 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dI 296 (307)
++-++++.+.+....|.+..+-++|.+.+
T Consensus 74 P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 74 PTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 46566765446677787776666665543
No 109
>PLN02309 5'-adenylylsulfate reductase
Probab=66.31 E-value=5.2 Score=41.10 Aligned_cols=23 Identities=13% Similarity=-0.182 Sum_probs=16.7
Q ss_pred CCCeEEEEc--CCCCCCcCcchhhh
Q psy6055 158 RGPSHRSVG--TDHIVVPSRLPSAN 180 (307)
Q Consensus 158 KGKVvLVVN--S~Cg~c~qe~p~L~ 180 (307)
+||++||.- .||++|.+..|.+.
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e 388 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYE 388 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHH
Confidence 688766443 89999987776553
No 110
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=65.53 E-value=10 Score=36.69 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=26.1
Q ss_pred cccceEEEECCCCcE-EEEecCCCCcccHHHHHHHHhh
Q psy6055 265 REPYEKFLVGARGYP-VARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 265 kWNFTKFLIDrdG~V-V~Ry~p~~~P~eLe~dIekLL~ 301 (307)
.--++-+ +-++|+. +.+|.+..+.++|.+.|++++.
T Consensus 74 ~~~Pt~~-~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 74 SGYPTLK-IFRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred ccccEEE-EEeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 3334544 4467887 8889888888888888888764
No 111
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=65.40 E-value=6.2 Score=37.51 Aligned_cols=36 Identities=8% Similarity=-0.071 Sum_probs=24.4
Q ss_pred cccCCCCc-ccCCCC-CCCeEEEEc---CCCCCCcCcchhh
Q psy6055 144 SGIGGPDR-IDGSRL-RGPSHRSVG---TDHIVVPSRLPSA 179 (307)
Q Consensus 144 ft~ldG~~-vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L 179 (307)
...+||+. .++.+| +|.-=|||| ..|++....++.+
T Consensus 84 vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f 124 (237)
T PF00837_consen 84 VVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAF 124 (237)
T ss_pred eEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHH
Confidence 34579998 999999 565447799 3577765544443
No 112
>PTZ00102 disulphide isomerase; Provisional
Probab=63.81 E-value=4.7 Score=39.69 Aligned_cols=36 Identities=19% Similarity=0.125 Sum_probs=25.7
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
|+--++-++++. |+.+ +|.+..+.++|.+.|++++.
T Consensus 104 i~~~Pt~~~~~~-g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 104 VRGYPTIKFFNK-GNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred CCcccEEEEEEC-CceE-EecCCCCHHHHHHHHHHhhC
Confidence 344456666654 5556 88888888889988888765
No 113
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=63.40 E-value=8.4 Score=33.39 Aligned_cols=37 Identities=19% Similarity=0.005 Sum_probs=33.3
Q ss_pred EEECCCCcEEEEecCCCCcccHHHHHHHHhhhhhhcC
Q psy6055 271 FLVGARGYPVARYDASVEPSELEPDIVEELMKREERE 307 (307)
Q Consensus 271 FLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~~~~ 307 (307)
+++=++|+++.+..+..+.+++.+.|+++|+...++|
T Consensus 95 Ll~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~~~ 131 (132)
T PRK11509 95 TLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQERA 131 (132)
T ss_pred EEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCccc
Confidence 6777999999999999999999999999999877664
No 114
>KOG0908|consensus
Probab=59.59 E-value=13 Score=36.08 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=24.1
Q ss_pred EEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 271 FLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 271 FLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|++=++|.-+.++.+ .++.-|++.|.+.+..
T Consensus 78 Fiff~ng~kid~~qG-Ad~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 78 FIFFRNGVKIDQIQG-ADASGLEEKVAKYAST 108 (288)
T ss_pred EEEEecCeEeeeecC-CCHHHHHHHHHHHhcc
Confidence 888899999988865 4677788888877654
No 115
>PTZ00062 glutaredoxin; Provisional
Probab=58.02 E-value=22 Score=32.76 Aligned_cols=29 Identities=14% Similarity=-0.003 Sum_probs=21.5
Q ss_pred EEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 271 FLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 271 FLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
|++=++|+.+.|+.+. +|.+|...|+++.
T Consensus 66 fv~~~~g~~i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 66 FEFYQNSQLINSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred EEEEECCEEEeeeeCC-CHHHHHHHHHHHc
Confidence 6666899999999854 5777776666554
No 116
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=56.77 E-value=2.9 Score=31.82 Aligned_cols=22 Identities=9% Similarity=-0.221 Sum_probs=16.3
Q ss_pred CCeEEEEc---CCCCCCcCcchhhhh
Q psy6055 159 GPSHRSVG---TDHIVVPSRLPSANV 181 (307)
Q Consensus 159 GKVvLVVN---S~Cg~c~qe~p~L~l 181 (307)
||.+| |+ +||+.|.+..|.+..
T Consensus 18 ~~~~~-v~f~~~~C~~C~~~~~~~~~ 42 (104)
T cd02995 18 DKDVL-VEFYAPWCGHCKALAPIYEE 42 (104)
T ss_pred CCcEE-EEEECCCCHHHHHHhhHHHH
Confidence 56555 66 899999988876643
No 117
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=53.83 E-value=20 Score=25.94 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=27.8
Q ss_pred EEEECCCCcEEEEecCCCCcc--cHHHHHHHHhhhhhhc
Q psy6055 270 KFLVGARGYPVARYDASVEPS--ELEPDIVEELMKREER 306 (307)
Q Consensus 270 KFLIDrdG~VV~Ry~p~~~P~--eLe~dIekLL~~~~~~ 306 (307)
.|.|++||+|-..-.+-.-.. ++.+.|+++|.....|
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG~v~~~ 40 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEALGTVTSR 40 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHhCceeee
Confidence 488999999977776655554 6788888888765544
No 118
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=48.70 E-value=3.5 Score=35.02 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=13.0
Q ss_pred ceEEEECCCCcEEEEecCCC
Q psy6055 268 YEKFLVGARGYPVARYDASV 287 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~ 287 (307)
++=.++|++|+++.+|.+..
T Consensus 99 P~~I~~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 99 PTFIFLDKDGKELGRWGERP 118 (129)
T ss_dssp SEEEEE-TT--EEEEEESS-
T ss_pred CEEEEEcCCCCEeEEEcCCC
Confidence 36578899999999998754
No 119
>KOG0852|consensus
Probab=48.44 E-value=17 Score=33.62 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=15.2
Q ss_pred cCCCC--cccCCCCCCCeEEEE
Q psy6055 146 IGGPD--RIDGSRLRGPSHRSV 165 (307)
Q Consensus 146 ~ldG~--~vdLS~yKGKVvLVV 165 (307)
++||. .++|++|+||.++..
T Consensus 18 VVdG~f~e~~L~dy~gkyvvlf 39 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDYKGKYVVLF 39 (196)
T ss_pred EEcCcceEEeehhhcccEEEEE
Confidence 36765 899999999965543
No 120
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=47.61 E-value=11 Score=31.25 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=15.6
Q ss_pred CCCcEEEEecCCCCcccHHH
Q psy6055 275 ARGYPVARYDASVEPSELEP 294 (307)
Q Consensus 275 rdG~VV~Ry~p~~~P~eLe~ 294 (307)
++|+...+|.+..+.+.|..
T Consensus 92 ~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 92 YRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred ECCccceEEeCCCCHHHHHh
Confidence 78888888888888777664
No 121
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=45.54 E-value=43 Score=29.64 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=22.4
Q ss_pred cceEEEECCCCcEEEEecCCCCc---ccHHHHHHHHhhh
Q psy6055 267 PYEKFLVGARGYPVARYDASVEP---SELEPDIVEELMK 302 (307)
Q Consensus 267 NFTKFLIDrdG~VV~Ry~p~~~P---~eLe~dIekLL~~ 302 (307)
-|| |||=++|+++.++.+..+. +=-..+++.+|.+
T Consensus 136 vPT-lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 LPA-LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCE-EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 345 6777899999999654431 2245566666654
No 122
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=44.86 E-value=7.1 Score=34.13 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=26.5
Q ss_pred CCCCCCCcccCCCCcccC--CCCCCCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 137 TSASPENSGIGGPDRIDG--SRLRGPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 137 ~~~~~~~ft~ldG~~vdL--S~yKGKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
.+..+.....++.+.++- .+-+++++| |+ +||++|.+..|.++.+
T Consensus 23 ~~~~~~~v~~l~~~~f~~~l~~~~~~~vv-V~Fya~wC~~Ck~l~p~l~~l 72 (152)
T cd02962 23 LYMGPEHIKYFTPKTLEEELERDKRVTWL-VEFFTTWSPECVNFAPVFAEL 72 (152)
T ss_pred ccCCCCccEEcCHHHHHHHHHhcCCCEEE-EEEECCCCHHHHHHHHHHHHH
Confidence 344344444455554432 223455544 67 8999999888877543
No 123
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=44.46 E-value=30 Score=31.19 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=25.8
Q ss_pred eEEEECCCCcEEEEecCCCCcccHHHHHHH
Q psy6055 269 EKFLVGARGYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 269 TKFLIDrdG~VV~Ry~p~~~P~eLe~dIek 298 (307)
.=.++|++|+|.....+..+++++++-|.-
T Consensus 127 aiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 127 AIIVLDKQGKVQFVKEGALSPAEVQQVIAL 156 (160)
T ss_pred eEEEEcCCccEEEEECCCCCHHHHHHHHHH
Confidence 446899999999999999999998877653
No 124
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=42.84 E-value=78 Score=25.67 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=22.4
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcc---c-HHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPS---E-LEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~---e-Le~dIekLL 300 (307)
|+.-++ +|+=++|+++.++.+..+.. + -.++|++.|
T Consensus 73 v~~vPt-~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 73 IKVLPT-VILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CccCCE-EEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 334445 67778999999986644332 2 345666665
No 125
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=40.41 E-value=29 Score=32.98 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=23.0
Q ss_pred EEEECCCCcEEEEecCCCCcccHHHHHH
Q psy6055 270 KFLVGARGYPVARYDASVEPSELEPDIV 297 (307)
Q Consensus 270 KFLIDrdG~VV~Ry~p~~~P~eLe~dIe 297 (307)
-||||.+|+|+-.=.+..++++++...+
T Consensus 220 vyLVD~~grIRWagsG~At~~E~~~L~k 247 (252)
T PF05176_consen 220 VYLVDPNGRIRWAGSGPATPEELESLWK 247 (252)
T ss_pred EEEECCCCeEEeCccCCCCHHHHHHHHH
Confidence 4999999999888888888888775543
No 126
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=38.07 E-value=48 Score=32.07 Aligned_cols=37 Identities=16% Similarity=0.030 Sum_probs=25.1
Q ss_pred CcccceEEEECCCCc-EEEEecCCCCcccHHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGY-PVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~-VV~Ry~p~~~P~eLe~dIekLL 300 (307)
|+--++-+|.++.++ ...+|.+..+.++|.+.|++..
T Consensus 417 i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 417 VEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred ccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 444467777766655 2467888788888887777654
No 127
>PF13728 TraF: F plasmid transfer operon protein
Probab=37.61 E-value=23 Score=32.58 Aligned_cols=42 Identities=10% Similarity=-0.011 Sum_probs=27.5
Q ss_pred CCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhcccCCCCCcc
Q psy6055 149 PDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVDPISGRGYKL 192 (307)
Q Consensus 149 G~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llfPcnQFG~QE 192 (307)
.+.--|.+..++..||+= +.|++|.+..|-|+.+. +++|+++
T Consensus 110 ~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~--~~yg~~v 153 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFA--DKYGFSV 153 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHH--HHhCCEE
Confidence 344556677788777666 99999988777655432 3345544
No 128
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=37.16 E-value=33 Score=30.85 Aligned_cols=26 Identities=4% Similarity=0.025 Sum_probs=16.4
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIV 297 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIe 297 (307)
+| ++|+++|+. +.+....++|...|+
T Consensus 188 Pt-l~i~~~~~~---~~G~~~~~~l~~~l~ 213 (215)
T TIGR02187 188 PK-IVINKGVEE---FVGAYPEEQFLEYIL 213 (215)
T ss_pred CE-EEEecCCEE---EECCCCHHHHHHHHH
Confidence 35 677888863 666656566666554
No 129
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=37.04 E-value=79 Score=32.78 Aligned_cols=24 Identities=13% Similarity=-0.258 Sum_probs=17.8
Q ss_pred CCCCeEEEEc--CCCCCCcCcchhhh
Q psy6055 157 LRGPSHRSVG--TDHIVVPSRLPSAN 180 (307)
Q Consensus 157 yKGKVvLVVN--S~Cg~c~qe~p~L~ 180 (307)
.++|++||.- +||++|...+|.+.
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~e 394 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYL 394 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHH
Confidence 4788777433 89999988777654
No 130
>KOG0190|consensus
Probab=36.03 E-value=42 Score=35.12 Aligned_cols=123 Identities=11% Similarity=0.038 Sum_probs=71.5
Q ss_pred CcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhh-cccCCC-----CCccCCChhhhccccceeecCCCCC
Q psy6055 143 NSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVV-DPISGR-----GYKLRRYKGKVLLIVHFRVSGKGFV 213 (307)
Q Consensus 143 ~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~ll-fPcnQF-----G~QEpgs~~EI~~~l~F~~pg~~yg 213 (307)
++-.++...++-.-.....+| |- -|||-|..-.|+...+ ..-..- ..++..+.+ . ..| .+|.
T Consensus 26 ~Vl~Lt~dnf~~~i~~~~~vl-VeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--~---~~~---~~y~ 96 (493)
T KOG0190|consen 26 DVLVLTKDNFKETINGHEFVL-VEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--S---DLA---SKYE 96 (493)
T ss_pred ceEEEecccHHHHhccCceEE-EEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--h---hhH---hhhc
Confidence 333466666554444444444 55 7999999888876533 211111 112223322 2 345 4777
Q ss_pred cc-ceeecccCCCCCC---------CChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 214 PK-FDVFGPGPVNGAS---------EAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 214 v~-FPVf~KvdVNG~~---------ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
+. ||.+ |+-.||.. +.-+-+||+.+.+.... ++ ...=-...||-+.+..|+..|
T Consensus 97 v~gyPTl-kiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~------------~l---~~~~~a~~~l~~~~~~vig~F 160 (493)
T KOG0190|consen 97 VRGYPTL-KIFRNGRSAQDYNGPREADGIVKWLKKQSGPASK------------TL---KTVDEAEEFLSKKDVVVIGFF 160 (493)
T ss_pred CCCCCeE-EEEecCCcceeccCcccHHHHHHHHHhccCCCce------------ec---ccHHHHHhhccCCceEEEEEe
Confidence 74 7876 45566663 56788999998764110 00 112225789999999999998
Q ss_pred cCCCCcc
Q psy6055 284 DASVEPS 290 (307)
Q Consensus 284 ~p~~~P~ 290 (307)
......+
T Consensus 161 ~d~~~~~ 167 (493)
T KOG0190|consen 161 KDLESLA 167 (493)
T ss_pred cccccch
Confidence 7655554
No 131
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=34.77 E-value=9.7 Score=29.91 Aligned_cols=23 Identities=9% Similarity=-0.220 Sum_probs=16.6
Q ss_pred CCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 159 GPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 159 GKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
++++| |+ +||+.|.+..|.++.+
T Consensus 18 ~~~vl-v~F~a~wC~~C~~~~p~~~~~ 43 (108)
T cd02996 18 AELVL-VNFYADWCRFSQMLHPIFEEA 43 (108)
T ss_pred CCEEE-EEEECCCCHHHHhhHHHHHHH
Confidence 45544 66 8999999888877543
No 132
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=33.73 E-value=63 Score=23.35 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=19.9
Q ss_pred eEEEECCCCcEEEEecCCCC-cccHHHHHHHHhhh
Q psy6055 269 EKFLVGARGYPVARYDASVE-PSELEPDIVEELMK 302 (307)
Q Consensus 269 TKFLIDrdG~VV~Ry~p~~~-P~eLe~dIekLL~~ 302 (307)
-+|.||++|+|..--.-... ...+++.+.+.+..
T Consensus 14 v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~ 48 (74)
T TIGR01352 14 VRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRK 48 (74)
T ss_pred EEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHh
Confidence 36999999999654321111 23466555555543
No 133
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=33.66 E-value=9.6 Score=30.96 Aligned_cols=21 Identities=10% Similarity=-0.156 Sum_probs=15.6
Q ss_pred CeEEEEc---CCCCCCcCcchhhhh
Q psy6055 160 PSHRSVG---TDHIVVPSRLPSANV 181 (307)
Q Consensus 160 KVvLVVN---S~Cg~c~qe~p~L~l 181 (307)
|+++ |+ +||++|.+..|.++.
T Consensus 20 ~~vv-V~f~a~wC~~C~~~~~~~~~ 43 (114)
T cd02992 20 SAWL-VEFYASWCGHCRAFAPTWKK 43 (114)
T ss_pred CeEE-EEEECCCCHHHHHHhHHHHH
Confidence 5555 66 899999988876643
No 134
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=33.52 E-value=31 Score=25.34 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=21.8
Q ss_pred eEEEECCCCcEEEEec-CCCCcccHHHHHHHHhhh
Q psy6055 269 EKFLVGARGYPVARYD-ASVEPSELEPDIVEELMK 302 (307)
Q Consensus 269 TKFLIDrdG~VV~Ry~-p~~~P~eLe~dIekLL~~ 302 (307)
-.|.||++|+|..--. .......|++.+.+.+.+
T Consensus 20 v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~ 54 (79)
T PF03544_consen 20 VEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKK 54 (79)
T ss_dssp EEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC
T ss_pred EEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHh
Confidence 4689999999965332 222233577777777654
No 135
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=32.33 E-value=25 Score=29.61 Aligned_cols=26 Identities=8% Similarity=-0.236 Sum_probs=18.2
Q ss_pred CCCCeEEEEc-C--------CCCCCcCcchhhhhh
Q psy6055 157 LRGPSHRSVG-T--------DHIVVPSRLPSANVV 182 (307)
Q Consensus 157 yKGKVvLVVN-S--------~Cg~c~qe~p~L~ll 182 (307)
.+||+++|.= + ||++|....|.+..+
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l 53 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREA 53 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHH
Confidence 3678766433 5 999998888766544
No 136
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=30.25 E-value=39 Score=26.12 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=23.2
Q ss_pred EEEECCCCcEEEEecC-----CCCcccHHHHHHHHhhh
Q psy6055 270 KFLVGARGYPVARYDA-----SVEPSELEPDIVEELMK 302 (307)
Q Consensus 270 KFLIDrdG~VV~Ry~p-----~~~P~eLe~dIekLL~~ 302 (307)
.|.||+||.|.--+.+ ..+.+++++.|++.|.+
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 6899999999876655 45666899999888865
No 137
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=27.61 E-value=86 Score=23.60 Aligned_cols=34 Identities=9% Similarity=0.213 Sum_probs=19.3
Q ss_pred eEEEECCCCcEEE-EecCCCCcccHHHHHHHHhhh
Q psy6055 269 EKFLVGARGYPVA-RYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 269 TKFLIDrdG~VV~-Ry~p~~~P~eLe~dIekLL~~ 302 (307)
-+|-||++|+|+. +......-.++++.+++.|..
T Consensus 30 V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai~~ 64 (85)
T PF13103_consen 30 VRITIDPDGRVISVRIVKSSGNPAFDAAVRRAIRR 64 (85)
T ss_dssp EEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4688999999943 333333334566667666653
No 138
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=26.52 E-value=1.1e+02 Score=25.41 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=25.4
Q ss_pred CCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 274 GARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 274 DrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
+.+.+++.|..+..+|++|...++..+++
T Consensus 87 ~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 87 DNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 77788999999999999999998887754
No 139
>KOG2507|consensus
Probab=24.26 E-value=96 Score=32.36 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.6
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
+.-|+|+..|.++.+..|.+.-++|...|++.+-
T Consensus 79 Ps~ffIg~sGtpLevitg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 79 PSIFFIGFSGTPLEVITGFVTADELASSIEKVWL 112 (506)
T ss_pred cceeeecCCCceeEEeeccccHHHHHHHHHHHHH
Confidence 4789999999999999999999999999988654
No 140
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=23.92 E-value=70 Score=22.65 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=19.8
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHH
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDI 296 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dI 296 (307)
++-+++ ++|+++..+.+..++++|...|
T Consensus 65 P~~~~~-~~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 65 PTFLFF-KNGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred cEEEEE-ECCEEEEEEecCCCHHHHHHHh
Confidence 454444 7889999998877766666554
No 141
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=23.25 E-value=98 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=21.9
Q ss_pred EECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 272 LVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 272 LIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|++.+|+||..=.+-.+....+..|+.+-..+
T Consensus 10 L~a~ng~viasse~Y~sk~~a~~~I~~Vk~~a 41 (49)
T PF07411_consen 10 LKAGNGEVIASSEGYSSKADAEKGIESVKKNA 41 (49)
T ss_dssp EE-TTS-EEEEBEEBSSHHHHHHHHHHHHHHT
T ss_pred EEcCCCCEEEecCCcCCHHHHHHHHHHHHHhC
Confidence 89999999995555556667777887765544
No 142
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=22.25 E-value=37 Score=28.81 Aligned_cols=29 Identities=7% Similarity=-0.119 Sum_probs=18.4
Q ss_pred CCCeEEEEc---CCCCCCcCcchhhhh-hcccCC
Q psy6055 158 RGPSHRSVG---TDHIVVPSRLPSANV-VDPISG 187 (307)
Q Consensus 158 KGKVvLVVN---S~Cg~c~qe~p~L~l-lfPcnQ 187 (307)
.+|+++ |. +||++|..--|.|.. +..+.+
T Consensus 13 ~~klVV-VdF~a~WC~pCk~mdp~l~ela~~~~~ 45 (114)
T cd02986 13 AEKVLV-LRFGRDEDAVCLQLDDILSKTSHDLSK 45 (114)
T ss_pred CCCEEE-EEEeCCCChhHHHHHHHHHHHHHHccC
Confidence 566544 67 899999776665543 334444
No 143
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=22.12 E-value=1.1e+02 Score=25.37 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=22.3
Q ss_pred CcccceEEEECCCCcEEE--EecCCCCcc---cHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVA--RYDASVEPS---ELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~--Ry~p~~~P~---eLe~dIekLL~~~ 303 (307)
.+-++. |++|++|+++. ......+.. .+.+.+.+++++.
T Consensus 48 ~~~d~~-~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (161)
T PF05228_consen 48 FGLDLI-FILDPDGRVLYSSSKGYDFEPGSFDPIPPSLSQLISDL 91 (161)
T ss_pred cCccEE-EEEcCCCCEEEEeccCcccCccccccccHHHHHHHHHH
Confidence 344444 89999999997 333333332 2444555555543
No 144
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=20.62 E-value=1.5e+02 Score=26.62 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=29.2
Q ss_pred CCcccceEEEECCCCcEE-EEecCCCCcccHHHHHHHHhh
Q psy6055 263 DVREPYEKFLVGARGYPV-ARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 263 ~IkWNFTKFLIDrdG~VV-~Ry~p~~~P~eLe~dIekLL~ 301 (307)
.|++-+| |+|=++|+.+ .+|.+....+++...|+.++.
T Consensus 74 ~V~~~Pt-~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 74 GVERVPT-TIILEEGKDGGIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred CCCccCE-EEEEeCCeeeEEEEeecCCHHHHHHHHHHHHH
Confidence 3666677 5555678887 499998888899999998875
Done!