Query psy6055
Match_columns 307
No_of_seqs 135 out of 1503
Neff 4.4
Searched_HMMs 29240
Date Sat Aug 17 01:22:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i3y_A Epididymal secretory gl 100.0 8.8E-32 3E-36 240.2 13.6 163 140-304 36-214 (215)
2 2r37_A Glutathione peroxidase 100.0 2.5E-30 8.7E-35 228.7 13.5 164 140-305 18-197 (207)
3 2f8a_A Glutathione peroxidase 99.9 9.9E-27 3.4E-31 204.5 12.5 161 141-302 28-208 (208)
4 3dwv_A Glutathione peroxidase- 99.9 3.7E-25 1.3E-29 188.7 12.3 144 140-303 27-185 (187)
5 3kij_A Probable glutathione pe 99.9 2.1E-24 7.3E-29 182.3 8.4 137 141-303 20-172 (180)
6 2p31_A CL683, glutathione pero 99.9 8E-23 2.7E-27 173.1 5.6 135 141-301 31-181 (181)
7 3cmi_A Peroxiredoxin HYR1; thi 99.9 6.5E-22 2.2E-26 165.0 10.7 144 140-304 13-171 (171)
8 2v1m_A Glutathione peroxidase; 99.9 5.1E-22 1.7E-26 162.6 9.1 141 141-302 13-168 (169)
9 2gs3_A PHGPX, GPX-4, phospholi 99.9 3.5E-22 1.2E-26 169.7 6.6 140 141-300 31-185 (185)
10 2vup_A Glutathione peroxidase- 99.9 7.7E-22 2.6E-26 168.3 8.5 144 140-304 29-188 (190)
11 2p5q_A Glutathione peroxidase 99.8 7.1E-22 2.4E-26 161.9 6.6 141 141-302 14-169 (170)
12 2obi_A PHGPX, GPX-4, phospholi 99.8 8E-22 2.7E-26 166.5 6.4 140 141-300 29-183 (183)
13 3eyt_A Uncharacterized protein 99.6 1E-15 3.4E-20 124.1 5.7 131 140-304 7-155 (158)
14 3lor_A Thiol-disulfide isomera 99.6 9.4E-16 3.2E-20 124.2 5.2 131 141-305 11-159 (160)
15 3raz_A Thioredoxin-related pro 99.5 3.6E-15 1.2E-19 120.9 4.9 132 141-305 5-144 (151)
16 4g2e_A Peroxiredoxin; redox pr 99.5 6.9E-15 2.4E-19 122.6 3.4 131 141-298 12-155 (157)
17 2ggt_A SCO1 protein homolog, m 99.5 1.2E-14 4.2E-19 118.0 4.6 144 140-303 4-163 (164)
18 1xzo_A BSSCO, hypothetical pro 99.5 7E-14 2.4E-18 114.9 8.5 141 140-302 14-173 (174)
19 3lwa_A Secreted thiol-disulfid 99.5 1.6E-14 5.5E-19 120.9 3.7 129 139-302 37-182 (183)
20 3or5_A Thiol:disulfide interch 99.5 3.6E-14 1.2E-18 115.1 5.5 133 140-305 15-155 (165)
21 2rli_A SCO2 protein homolog, m 99.5 4E-14 1.4E-18 116.0 5.8 147 140-306 7-169 (171)
22 1jfu_A Thiol:disulfide interch 99.5 1.6E-14 5.6E-19 120.8 3.5 130 140-303 41-182 (186)
23 2l5o_A Putative thioredoxin; s 99.4 4.3E-14 1.5E-18 113.6 4.5 128 140-305 9-145 (153)
24 3fw2_A Thiol-disulfide oxidore 99.4 1.3E-13 4.6E-18 111.5 7.0 126 139-302 11-149 (150)
25 4hde_A SCO1/SENC family lipopr 99.4 4E-14 1.4E-18 119.9 3.9 141 140-301 13-170 (170)
26 4gqc_A Thiol peroxidase, perox 99.4 7.3E-14 2.5E-18 117.9 3.2 136 140-303 12-162 (164)
27 2lrn_A Thiol:disulfide interch 99.4 3E-13 1E-17 109.6 5.7 128 140-305 10-145 (152)
28 3ewl_A Uncharacterized conserv 99.4 9.3E-14 3.2E-18 110.6 2.5 124 139-301 7-141 (142)
29 3u5r_E Uncharacterized protein 99.4 3E-13 1E-17 118.3 6.0 126 140-303 39-189 (218)
30 2f9s_A Thiol-disulfide oxidore 99.4 1.2E-13 4E-18 111.4 2.9 128 140-305 7-142 (151)
31 3p7x_A Probable thiol peroxida 99.4 1.1E-13 3.7E-18 115.1 2.4 112 140-284 27-146 (166)
32 2ywi_A Hypothetical conserved 99.4 2.3E-13 7.7E-18 114.5 3.8 127 139-303 24-176 (196)
33 3gkn_A Bacterioferritin comigr 99.4 2.1E-13 7.2E-18 111.8 2.8 117 144-286 20-144 (163)
34 2cvb_A Probable thiol-disulfid 99.3 6.5E-13 2.2E-17 111.5 5.5 125 140-303 14-161 (188)
35 3ixr_A Bacterioferritin comigr 99.3 9.6E-14 3.3E-18 117.8 0.4 120 141-286 33-160 (179)
36 3hcz_A Possible thiol-disulfid 99.3 9.6E-13 3.3E-17 104.3 6.1 126 140-301 12-146 (148)
37 3drn_A Peroxiredoxin, bacterio 99.3 5.3E-13 1.8E-17 110.2 3.8 117 140-290 9-134 (161)
38 4fo5_A Thioredoxin-like protei 99.3 5.6E-13 1.9E-17 107.0 3.8 120 140-298 14-142 (143)
39 2yzh_A Probable thiol peroxida 99.3 1.1E-12 3.6E-17 109.4 5.2 128 142-300 30-171 (171)
40 2jsy_A Probable thiol peroxida 99.3 7.8E-13 2.7E-17 109.0 4.3 129 140-301 25-167 (167)
41 3zrd_A Thiol peroxidase; oxido 99.3 3.8E-12 1.3E-16 110.8 8.3 129 140-299 59-199 (200)
42 3fkf_A Thiol-disulfide oxidore 99.3 2.4E-12 8E-17 102.0 6.3 125 140-302 12-147 (148)
43 2h30_A Thioredoxin, peptide me 99.3 1.5E-12 5.3E-17 105.6 5.2 125 143-305 22-160 (164)
44 1xvq_A Thiol peroxidase; thior 99.3 4.7E-12 1.6E-16 106.5 8.2 133 140-303 25-167 (175)
45 2b7k_A SCO1 protein; metalloch 99.3 1.6E-12 5.4E-17 112.1 5.3 145 140-303 22-181 (200)
46 2b5x_A YKUV protein, TRXY; thi 99.3 7.7E-13 2.6E-17 104.5 2.7 120 145-303 15-147 (148)
47 3me7_A Putative uncharacterize 99.3 1.1E-12 3.7E-17 110.4 3.6 142 141-304 10-165 (170)
48 1psq_A Probable thiol peroxida 99.3 1.9E-12 6.6E-17 107.3 4.6 126 140-298 23-162 (163)
49 1q98_A Thiol peroxidase, TPX; 99.3 5.1E-12 1.7E-16 105.2 6.6 115 140-285 24-148 (165)
50 1we0_A Alkyl hydroperoxide red 99.3 5.1E-12 1.7E-16 106.7 6.7 132 140-303 8-159 (187)
51 2c0d_A Thioredoxin peroxidase 99.3 1E-12 3.6E-17 116.7 2.5 131 140-303 32-186 (221)
52 3kcm_A Thioredoxin family prot 99.3 1.4E-12 4.9E-17 104.8 2.9 128 140-305 9-147 (154)
53 4evm_A Thioredoxin family prot 99.3 4.2E-12 1.4E-16 98.0 5.4 122 140-299 3-137 (138)
54 1n8j_A AHPC, alkyl hydroperoxi 99.3 3.7E-13 1.3E-17 115.1 -0.8 130 140-301 8-156 (186)
55 2lrt_A Uncharacterized protein 99.3 3.4E-12 1.2E-16 104.6 4.7 123 139-301 15-145 (152)
56 2hyx_A Protein DIPZ; thioredox 99.2 1.3E-12 4.3E-17 124.9 2.3 123 144-304 67-202 (352)
57 2lja_A Putative thiol-disulfid 99.2 8.6E-12 2.9E-16 100.0 6.8 127 141-304 12-146 (152)
58 2k6v_A Putative cytochrome C o 99.2 6E-13 2.1E-17 108.8 -0.1 139 140-300 17-172 (172)
59 3kh7_A Thiol:disulfide interch 99.2 8E-13 2.8E-17 111.3 0.4 125 140-304 37-170 (176)
60 1lu4_A Soluble secreted antige 99.2 2.3E-12 7.8E-17 100.7 2.6 120 141-301 6-136 (136)
61 1zof_A Alkyl hydroperoxide-red 99.2 7.3E-12 2.5E-16 106.9 6.0 130 140-302 8-162 (198)
62 3ia1_A THIO-disulfide isomeras 99.2 4.2E-12 1.4E-16 102.3 4.2 126 140-304 12-147 (154)
63 3gl3_A Putative thiol:disulfid 99.2 7.5E-12 2.6E-16 100.3 5.4 126 139-303 9-144 (152)
64 2ls5_A Uncharacterized protein 98.9 9.7E-13 3.3E-17 107.1 0.0 127 141-304 15-151 (159)
65 1xvw_A Hypothetical protein RV 99.2 1E-11 3.5E-16 101.1 5.4 121 140-290 16-145 (160)
66 2bmx_A Alkyl hydroperoxidase C 99.2 1.1E-11 3.9E-16 105.7 5.2 120 149-301 33-170 (195)
67 1zzo_A RV1677; thioredoxin fol 99.2 8.2E-12 2.8E-16 97.0 3.9 121 140-301 6-135 (136)
68 3ztl_A Thioredoxin peroxidase; 99.2 6.6E-12 2.3E-16 110.5 3.7 119 141-291 48-184 (222)
69 3ha9_A Uncharacterized thiored 99.2 7.9E-12 2.7E-16 102.3 3.3 120 141-301 19-164 (165)
70 2pn8_A Peroxiredoxin-4; thiore 99.2 4.2E-12 1.4E-16 111.3 0.9 122 148-302 37-178 (211)
71 3eur_A Uncharacterized protein 99.1 2.1E-11 7.2E-16 97.6 4.4 119 139-296 11-140 (142)
72 2i81_A 2-Cys peroxiredoxin; st 99.1 1.8E-11 6.2E-16 107.4 4.0 130 140-302 28-181 (213)
73 1uul_A Tryparedoxin peroxidase 99.1 2E-11 6.9E-16 104.9 4.1 130 141-302 14-166 (202)
74 1kng_A Thiol:disulfide interch 99.1 3.3E-11 1.1E-15 96.7 4.8 125 140-304 15-155 (156)
75 2a4v_A Peroxiredoxin DOT5; yea 99.1 3.1E-12 1E-16 105.2 -1.8 129 140-303 14-156 (159)
76 2h01_A 2-Cys peroxiredoxin; th 99.1 4E-11 1.4E-15 101.8 5.1 130 140-302 7-160 (192)
77 3hdc_A Thioredoxin family prot 99.1 5.5E-11 1.9E-15 97.1 5.4 120 140-297 22-148 (158)
78 2b1k_A Thiol:disulfide interch 99.1 3.3E-11 1.1E-15 98.8 3.3 125 140-304 29-163 (168)
79 3erw_A Sporulation thiol-disul 99.1 3.3E-11 1.1E-15 94.8 3.1 117 141-296 17-144 (145)
80 3tjj_A Peroxiredoxin-4; thiore 99.1 7.1E-11 2.4E-15 107.5 5.5 120 148-299 80-218 (254)
81 3mng_A Peroxiredoxin-5, mitoch 99.1 1.3E-11 4.5E-16 106.1 -0.3 131 140-298 22-172 (173)
82 1zye_A Thioredoxin-dependent p 99.1 9.9E-11 3.4E-15 103.0 5.2 124 147-302 44-186 (220)
83 1qmv_A Human thioredoxin perox 99.1 7.7E-11 2.6E-15 100.6 4.0 129 141-301 13-163 (197)
84 3qpm_A Peroxiredoxin; oxidored 99.0 6.5E-11 2.2E-15 106.3 2.1 119 149-299 67-204 (240)
85 1tp9_A Peroxiredoxin, PRX D (t 99.0 3.2E-11 1.1E-15 100.4 -1.6 112 146-286 19-146 (162)
86 1xcc_A 1-Cys peroxiredoxin; un 98.9 2.1E-10 7.3E-15 101.7 2.6 140 140-303 10-168 (220)
87 3uma_A Hypothetical peroxiredo 98.9 4.1E-11 1.4E-15 104.0 -2.4 131 140-298 33-183 (184)
88 2wfc_A Peroxiredoxin 5, PRDX5; 98.9 5.5E-11 1.9E-15 100.9 -2.3 119 140-286 10-142 (167)
89 1prx_A HORF6; peroxiredoxin, h 98.9 2.5E-10 8.4E-15 101.6 1.5 139 140-303 12-171 (224)
90 2lus_A Thioredoxion; CR-Trp16, 98.4 1.6E-10 5.5E-15 91.4 0.0 110 142-286 7-128 (143)
91 2pwj_A Mitochondrial peroxired 98.9 2.1E-10 7.1E-15 97.3 -0.0 65 150-220 33-110 (171)
92 3keb_A Probable thiol peroxida 98.9 2.3E-09 8E-14 97.1 6.8 128 141-302 30-177 (224)
93 4eo3_A Bacterioferritin comigr 98.9 4.7E-10 1.6E-14 105.5 1.6 123 140-301 5-139 (322)
94 2v2g_A Peroxiredoxin 6; oxidor 98.8 3.5E-10 1.2E-14 101.9 -1.7 137 140-303 10-167 (233)
95 3a2v_A Probable peroxiredoxin; 98.7 1.5E-09 5E-14 99.3 1.2 133 142-303 14-164 (249)
96 1nm3_A Protein HI0572; hybrid, 98.7 1.1E-09 3.9E-14 96.3 -1.3 119 141-288 11-145 (241)
97 1i5g_A Tryparedoxin II; electr 98.6 1.6E-08 5.4E-13 80.8 1.7 106 142-284 11-127 (144)
98 1o73_A Tryparedoxin; electron 98.5 2.5E-08 8.4E-13 79.2 1.0 104 143-284 13-127 (144)
99 3s9f_A Tryparedoxin; thioredox 98.5 3.9E-08 1.3E-12 81.9 1.6 104 143-284 33-147 (165)
100 1o8x_A Tryparedoxin, TRYX, TXN 98.4 6.4E-08 2.2E-12 77.6 1.7 106 142-285 12-128 (146)
101 3tue_A Tryparedoxin peroxidase 98.4 9.7E-08 3.3E-12 86.4 2.5 126 147-300 44-184 (219)
102 3sbc_A Peroxiredoxin TSA1; alp 98.2 2E-07 6.9E-12 84.1 0.2 125 148-300 41-180 (216)
103 3hxs_A Thioredoxin, TRXP; elec 98.1 5.4E-06 1.8E-10 65.9 6.0 98 147-302 39-140 (141)
104 4f82_A Thioredoxin reductase; 98.0 1.3E-07 4.3E-12 82.9 -4.6 65 150-220 37-114 (176)
105 2l57_A Uncharacterized protein 98.0 6.3E-06 2.2E-10 64.4 5.3 109 142-304 9-120 (126)
106 2ju5_A Thioredoxin disulfide i 98.0 8.8E-07 3E-11 73.0 -0.2 38 264-302 114-153 (154)
107 2kuc_A Putative disulphide-iso 97.9 2.1E-06 7.2E-11 67.2 0.3 43 264-306 84-126 (130)
108 2lst_A Thioredoxin; structural 97.0 3.1E-06 1.1E-10 66.4 0.0 41 264-304 76-119 (130)
109 3f9u_A Putative exported cytoc 97.8 1.7E-06 5.8E-11 71.6 -1.6 42 264-305 128-170 (172)
110 3p2a_A Thioredoxin 2, putative 97.7 3.5E-05 1.2E-09 62.1 5.0 102 144-303 40-145 (148)
111 1sen_A Thioredoxin-like protei 97.7 1.6E-06 5.6E-11 72.6 -3.7 40 266-305 103-152 (164)
112 3ul3_B Thioredoxin, thioredoxi 97.6 3.8E-05 1.3E-09 60.6 4.1 99 142-298 25-127 (128)
113 2xhf_A Peroxiredoxin 5; oxidor 97.6 5.1E-05 1.7E-09 65.7 4.3 73 142-220 21-108 (171)
114 2fwh_A Thiol:disulfide interch 97.5 9.5E-06 3.2E-10 64.9 -0.9 36 264-299 89-126 (134)
115 3qfa_C Thioredoxin; protein-pr 97.3 5.5E-05 1.9E-09 58.9 1.3 34 265-300 83-116 (116)
116 1v98_A Thioredoxin; oxidoreduc 97.3 0.00016 5.5E-09 57.6 3.8 38 264-302 102-139 (140)
117 1xiy_A Peroxiredoxin, pfaop; a 97.2 2.8E-05 9.4E-10 67.8 -1.3 66 150-220 33-110 (182)
118 3cxg_A Putative thioredoxin; m 97.2 0.00017 5.8E-09 57.8 3.4 39 264-303 90-131 (133)
119 2dml_A Protein disulfide-isome 97.2 0.0017 5.7E-08 50.5 8.4 41 264-304 87-127 (130)
120 3fk8_A Disulphide isomerase; A 97.2 0.00035 1.2E-08 54.8 4.5 36 265-300 90-132 (133)
121 2dj1_A Protein disulfide-isome 97.2 0.00032 1.1E-08 55.3 4.2 38 264-303 89-126 (140)
122 1z6n_A Hypothetical protein PA 97.1 0.00012 4.1E-09 62.5 0.9 31 151-182 46-79 (167)
123 3qou_A Protein YBBN; thioredox 97.0 0.0009 3.1E-08 59.3 6.2 38 264-302 78-115 (287)
124 2djj_A PDI, protein disulfide- 97.0 0.001 3.5E-08 50.9 5.3 105 143-302 8-118 (121)
125 3f3q_A Thioredoxin-1; His TAG, 96.9 0.00027 9.1E-09 54.3 1.7 35 264-300 75-109 (109)
126 2ppt_A Thioredoxin-2; thiredox 96.9 0.00092 3.1E-08 55.2 5.0 38 264-302 116-153 (155)
127 2o8v_B Thioredoxin 1; disulfid 96.9 0.00048 1.6E-08 54.8 3.0 37 264-301 92-128 (128)
128 2l5l_A Thioredoxin; structural 96.9 0.00094 3.2E-08 53.1 4.7 39 264-303 90-128 (136)
129 2pu9_C TRX-F, thioredoxin F-ty 96.9 0.00019 6.4E-09 54.6 0.5 34 265-300 77-110 (111)
130 2trx_A Thioredoxin; electron t 96.9 0.0013 4.3E-08 49.2 5.1 36 265-301 73-108 (108)
131 3gix_A Thioredoxin-like protei 96.9 0.00057 1.9E-08 56.2 3.3 39 264-303 75-123 (149)
132 2xc2_A Thioredoxinn; oxidoredu 96.9 0.00032 1.1E-08 53.9 1.7 34 265-300 84-117 (117)
133 2voc_A Thioredoxin; electron t 96.9 0.0012 4E-08 50.5 4.8 38 264-302 69-106 (112)
134 1faa_A Thioredoxin F; electron 96.8 7.5E-05 2.6E-09 57.9 -2.2 33 266-300 91-123 (124)
135 3d22_A TRXH4, thioredoxin H-ty 96.8 0.0001 3.6E-09 58.4 -1.6 37 264-302 97-133 (139)
136 1x5d_A Protein disulfide-isome 96.8 0.0021 7.2E-08 49.8 5.7 39 264-303 81-119 (133)
137 3zzx_A Thioredoxin; oxidoreduc 96.8 0.00037 1.3E-08 54.5 1.3 33 264-298 71-103 (105)
138 1mek_A Protein disulfide isome 96.7 0.00089 3E-08 50.4 3.1 38 264-302 79-118 (120)
139 1thx_A Thioredoxin, thioredoxi 96.6 0.0028 9.6E-08 47.6 5.5 38 264-302 77-114 (115)
140 3apq_A DNAJ homolog subfamily 96.6 0.00034 1.2E-08 60.0 0.3 107 139-303 94-204 (210)
141 3tco_A Thioredoxin (TRXA-1); d 96.6 0.00071 2.4E-08 50.3 2.0 37 264-301 73-109 (109)
142 1r26_A Thioredoxin; redox-acti 96.6 0.0012 4.3E-08 52.4 3.3 37 264-302 88-124 (125)
143 1xfl_A Thioredoxin H1; AT3G510 96.6 0.001 3.6E-08 52.4 2.8 33 267-301 92-124 (124)
144 2wz9_A Glutaredoxin-3; protein 96.6 0.0014 4.7E-08 53.4 3.4 38 264-303 83-120 (153)
145 1t00_A Thioredoxin, TRX; redox 96.5 0.0013 4.3E-08 49.7 3.0 34 267-301 78-111 (112)
146 2dj3_A Protein disulfide-isome 96.5 0.002 6.9E-08 50.2 4.2 41 263-303 78-120 (133)
147 1nsw_A Thioredoxin, TRX; therm 96.5 0.00053 1.8E-08 51.1 0.7 35 265-300 70-104 (105)
148 1ep7_A Thioredoxin CH1, H-type 96.5 0.0012 4.1E-08 49.7 2.6 33 267-301 79-111 (112)
149 4euy_A Uncharacterized protein 96.5 0.0012 4.1E-08 49.8 2.4 36 264-300 69-104 (105)
150 2vim_A Thioredoxin, TRX; thior 96.4 0.0012 4.1E-08 48.7 2.1 32 267-300 73-104 (104)
151 1w4v_A Thioredoxin, mitochondr 96.4 0.0025 8.7E-08 49.3 4.0 34 266-300 85-118 (119)
152 3ph9_A Anterior gradient prote 96.4 0.00022 7.7E-09 60.2 -2.2 41 264-304 98-148 (151)
153 1wmj_A Thioredoxin H-type; str 96.4 0.0013 4.5E-08 50.7 2.4 34 271-305 93-126 (130)
154 1xwb_A Thioredoxin; dimerizati 96.4 0.0015 5.1E-08 48.4 2.5 33 266-300 74-106 (106)
155 2vlu_A Thioredoxin, thioredoxi 96.4 0.0019 6.5E-08 49.6 3.1 34 267-302 88-121 (122)
156 3hz4_A Thioredoxin; NYSGXRC, P 96.4 0.00099 3.4E-08 53.4 1.5 41 264-305 76-116 (140)
157 3h79_A Thioredoxin-like protei 96.3 0.0024 8.1E-08 49.9 3.5 111 137-299 10-126 (127)
158 2e0q_A Thioredoxin; electron t 96.3 0.0015 5.2E-08 47.7 2.0 35 266-301 69-103 (104)
159 1dby_A Chloroplast thioredoxin 96.3 0.0033 1.1E-07 46.8 3.8 33 268-301 75-107 (107)
160 3emx_A Thioredoxin; structural 96.3 0.0014 4.8E-08 52.3 1.8 40 264-304 90-129 (135)
161 2yj7_A LPBCA thioredoxin; oxid 95.2 0.00072 2.5E-08 49.7 0.0 32 268-300 75-106 (106)
162 3t58_A Sulfhydryl oxidase 1; o 96.2 0.0027 9.3E-08 63.3 4.0 120 133-304 3-130 (519)
163 3idv_A Protein disulfide-isome 96.2 0.0015 5.3E-08 55.6 1.9 103 144-302 17-123 (241)
164 2i4a_A Thioredoxin; acidophIle 96.2 0.0028 9.5E-08 46.9 3.1 34 266-300 74-107 (107)
165 3d6i_A Monothiol glutaredoxin- 96.2 0.0087 3E-07 45.1 5.9 37 264-302 74-110 (112)
166 1oaz_A Thioredoxin 1; immune s 96.2 0.0096 3.3E-07 46.9 6.3 36 264-300 87-122 (123)
167 1fb6_A Thioredoxin M; electron 96.2 0.0016 5.5E-08 48.1 1.6 32 268-300 74-105 (105)
168 3gnj_A Thioredoxin domain prot 96.2 0.0047 1.6E-07 46.1 4.2 37 264-301 74-110 (111)
169 1x5e_A Thioredoxin domain cont 96.1 0.0025 8.4E-08 49.5 2.5 38 264-303 75-112 (126)
170 3m9j_A Thioredoxin; oxidoreduc 96.1 0.0018 6.2E-08 48.0 1.6 35 264-300 71-105 (105)
171 1syr_A Thioredoxin; SGPP, stru 96.0 0.0017 5.9E-08 49.5 1.2 35 265-301 78-112 (112)
172 2l6c_A Thioredoxin; oxidoreduc 96.0 0.0068 2.3E-07 46.3 4.4 37 264-301 70-106 (110)
173 2dj0_A Thioredoxin-related tra 96.0 0.0012 4.1E-08 52.4 0.0 38 144-182 9-51 (137)
174 3die_A Thioredoxin, TRX; elect 96.0 0.0036 1.2E-07 46.3 2.6 35 265-300 72-106 (106)
175 3dxb_A Thioredoxin N-terminall 95.9 0.0014 4.8E-08 56.8 0.0 39 264-303 82-120 (222)
176 3q6o_A Sulfhydryl oxidase 1; p 95.9 0.0063 2.2E-07 53.1 4.2 117 134-304 4-130 (244)
177 1ti3_A Thioredoxin H, PTTRXH1; 95.7 0.0079 2.7E-07 45.0 3.7 32 268-301 81-112 (113)
178 2j23_A Thioredoxin; immune pro 95.7 0.0027 9.4E-08 49.4 1.1 32 268-301 90-121 (121)
179 2yzu_A Thioredoxin; redox prot 95.7 0.0058 2E-07 45.1 2.9 35 267-302 73-107 (109)
180 2vm1_A Thioredoxin, thioredoxi 95.5 0.0037 1.3E-07 47.2 1.2 34 268-303 83-116 (118)
181 2es7_A Q8ZP25_salty, putative 95.5 0.013 4.6E-07 48.2 4.7 40 265-305 90-129 (142)
182 1gh2_A Thioredoxin-like protei 95.4 0.01 3.5E-07 44.4 3.5 35 264-300 72-106 (107)
183 2oe3_A Thioredoxin-3; electron 95.4 0.0028 9.5E-08 49.2 0.1 32 265-298 82-113 (114)
184 1qgv_A Spliceosomal protein U5 95.3 0.011 3.6E-07 48.1 3.5 39 264-303 75-123 (142)
185 1fo5_A Thioredoxin; disulfide 95.3 0.024 8.1E-07 40.3 4.7 32 264-300 54-85 (85)
186 1zma_A Bacterocin transport ac 95.1 0.007 2.4E-07 46.4 1.6 32 265-297 86-117 (118)
187 1nho_A Probable thioredoxin; b 95.1 0.037 1.3E-06 39.3 5.3 30 266-300 55-84 (85)
188 2dlx_A UBX domain-containing p 94.9 0.013 4.4E-07 49.5 2.8 37 267-304 102-139 (153)
189 3ira_A Conserved protein; meth 94.8 0.0039 1.3E-07 53.9 -0.6 27 147-174 27-56 (173)
190 3f8u_A Protein disulfide-isome 94.7 0.012 4.2E-07 56.1 2.5 39 264-302 423-462 (481)
191 3aps_A DNAJ homolog subfamily 94.6 0.0032 1.1E-07 48.3 -1.5 40 264-304 73-116 (122)
192 2i1u_A Thioredoxin, TRX, MPT46 94.6 0.0071 2.4E-07 45.9 0.4 34 267-301 85-118 (121)
193 2f51_A Thioredoxin; electron t 94.5 0.0059 2E-07 47.5 -0.2 39 144-182 5-48 (118)
194 3uvt_A Thioredoxin domain-cont 94.5 0.042 1.4E-06 40.7 4.4 34 264-298 76-109 (111)
195 1a8l_A Protein disulfide oxido 94.4 0.014 4.7E-07 49.5 1.7 34 266-300 192-225 (226)
196 2dbc_A PDCL2, unnamed protein 92.8 0.043 1.5E-06 43.8 2.0 35 264-299 78-119 (135)
197 3qcp_A QSOX from trypanosoma b 91.8 0.2 6.9E-06 49.8 5.8 40 142-182 23-67 (470)
198 2ywm_A Glutaredoxin-like prote 91.6 0.053 1.8E-06 46.2 1.3 33 268-304 191-223 (229)
199 2hls_A Protein disulfide oxido 91.4 0.11 3.7E-06 46.0 3.1 30 268-302 198-227 (243)
200 3gyk_A 27KDA outer membrane pr 90.8 0.035 1.2E-06 45.5 -0.6 33 148-180 11-45 (175)
201 3apo_A DNAJ homolog subfamily 89.4 0.29 9.8E-06 49.7 4.6 34 266-301 509-542 (780)
202 1sji_A Calsequestrin 2, calseq 89.4 0.067 2.3E-06 49.2 -0.1 34 266-301 89-122 (350)
203 1a0r_P Phosducin, MEKA, PP33; 88.5 0.21 7.1E-06 45.2 2.5 24 158-182 132-158 (245)
204 3idv_A Protein disulfide-isome 88.0 0.23 7.7E-06 42.0 2.3 32 268-301 206-237 (241)
205 1ttz_A Conserved hypothetical 87.8 0.093 3.2E-06 40.0 -0.2 27 275-304 54-80 (87)
206 2av4_A Thioredoxin-like protei 87.7 0.18 6E-06 43.8 1.5 39 264-303 93-141 (160)
207 2r2j_A Thioredoxin domain-cont 87.6 0.057 1.9E-06 50.5 -1.9 38 264-302 80-118 (382)
208 2b5e_A Protein disulfide-isome 87.2 0.38 1.3E-05 46.2 3.6 34 267-301 87-122 (504)
209 2znm_A Thiol:disulfide interch 85.5 0.34 1.2E-05 40.2 2.0 35 264-303 148-182 (195)
210 3uem_A Protein disulfide-isome 84.6 0.27 9.4E-06 44.8 1.1 35 264-298 319-354 (361)
211 2b5e_A Protein disulfide-isome 84.3 0.13 4.3E-06 49.5 -1.3 37 264-301 429-467 (504)
212 3apo_A DNAJ homolog subfamily 84.0 0.16 5.6E-06 51.5 -0.7 36 268-304 731-770 (780)
213 3f8u_A Protein disulfide-isome 83.9 0.69 2.3E-05 43.9 3.6 33 268-301 77-109 (481)
214 3kp8_A Vkorc1/thioredoxin doma 83.8 0.0088 3E-07 46.8 -8.0 34 148-182 1-37 (106)
215 2trc_P Phosducin, MEKA, PP33; 83.5 0.82 2.8E-05 40.0 3.7 24 158-182 119-145 (217)
216 3dml_A Putative uncharacterize 82.6 1.5 5.2E-05 35.5 4.7 41 263-304 73-113 (116)
217 2e7p_A Glutaredoxin; thioredox 80.7 0.1 3.6E-06 39.6 -2.8 26 276-301 80-108 (116)
218 3ed3_A Protein disulfide-isome 76.1 2.3 7.7E-05 38.7 4.2 23 279-301 120-142 (298)
219 1a8l_A Protein disulfide oxido 67.5 2.5 8.5E-05 35.4 2.2 33 268-301 80-113 (226)
220 1wou_A Thioredoxin -related pr 65.6 0.79 2.7E-05 35.4 -1.2 28 155-183 20-57 (123)
221 2qgv_A Hydrogenase-1 operon pr 62.7 5.1 0.00018 33.5 3.2 37 268-305 93-129 (140)
222 1eej_A Thiol:disulfide interch 58.9 1.5 5.2E-05 37.7 -0.8 34 148-181 75-110 (216)
223 1wjk_A C330018D20RIK protein; 58.7 2.4 8.4E-05 32.2 0.5 24 276-301 73-96 (100)
224 2fgx_A Putative thioredoxin; N 56.2 5.5 0.00019 31.6 2.2 15 167-181 38-52 (107)
225 3kzq_A Putative uncharacterize 48.5 13 0.00046 31.2 3.5 34 271-304 173-206 (208)
226 2qsi_A Putative hydrogenase ex 47.8 14 0.00049 30.6 3.5 33 268-301 91-123 (137)
227 1ilo_A Conserved hypothetical 35.3 11 0.00037 25.7 0.7 16 167-182 9-24 (77)
228 2in3_A Hypothetical protein; D 29.7 42 0.0015 27.7 3.6 34 268-302 178-211 (216)
229 2rem_A Disulfide oxidoreductas 24.2 81 0.0028 25.4 4.3 35 264-304 153-187 (193)
230 4dvc_A Thiol:disulfide interch 23.6 62 0.0021 25.6 3.4 36 264-302 148-183 (184)
231 1t3b_A Thiol:disulfide interch 23.3 14 0.00048 31.5 -0.6 23 158-180 85-109 (211)
232 1v58_A Thiol:disulfide interch 22.0 41 0.0014 29.2 2.2 37 264-301 197-233 (241)
233 2dj7_A Actin-binding LIM prote 21.2 42 0.0014 24.5 1.8 25 83-107 1-25 (80)
234 2ec4_A FAS-associated factor 1 20.9 1.2E+02 0.004 25.7 4.8 38 268-305 132-172 (178)
235 3bid_A UPF0339 protein NMB1088 20.6 1E+02 0.0035 22.4 3.8 32 272-303 17-48 (64)
236 3iv4_A Putative oxidoreductase 20.3 18 0.00062 29.2 -0.5 28 268-296 83-111 (112)
No 1
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=99.97 E-value=8.8e-32 Score=240.23 Aligned_cols=163 Identities=26% Similarity=0.407 Sum_probs=133.4
Q ss_pred CCCCcccCC-CCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhh-------------cccCCCCCccCCChhhhcccc
Q psy6055 140 SPENSGIGG-PDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVV-------------DPISGRGYKLRRYKGKVLLIV 203 (307)
Q Consensus 140 ~~~~ft~ld-G~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~ll-------------fPcnQFG~QEpgs~~EI~~~l 203 (307)
.+++++++| |+.++|++|||||+||+| |||++|. +||.|+.+ ++|+||+.||+++.++|++.+
T Consensus 36 pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~ 114 (215)
T 2i3y_A 36 YDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGL 114 (215)
T ss_dssp GGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHH
T ss_pred CCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHH
Confidence 345666799 999999999999988777 9999998 99987532 489999999999999999533
Q ss_pred ceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 204 HFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 204 ~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
++++|+.+|+++|||+.++||||..+||+|++|+...+...+.+|.+ ....|.|...+.|+|||++||||++|+|+++|
T Consensus 115 ~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~~p~~~~~i~~npttfLID~~G~vv~~~ 193 (215)
T 2i3y_A 115 KYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTF-KSISWDPVKVHDIRWNFEKFLVGPDGIPVMRW 193 (215)
T ss_dssp HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCT-TTCCSSSCCTTCCCSTTCEEEECTTSCEEEEE
T ss_pred HhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccc-cccccccccccccccCceEEEECCCCeEEEEe
Confidence 34445558999999999999999999999999998765322233321 23456666667899999999999999999999
Q ss_pred cCCCCcccHHHHHHHHhhhhh
Q psy6055 284 DASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~~~ 304 (307)
.+.+++++|+++|++||++.+
T Consensus 194 ~g~~~~~~l~~~I~~ll~~~~ 214 (215)
T 2i3y_A 194 SHRATVSSVKTDILAYLKQFK 214 (215)
T ss_dssp CTTSCHHHHHHHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999998754
No 2
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=228.66 Aligned_cols=164 Identities=26% Similarity=0.427 Sum_probs=132.5
Q ss_pred CCCCcccCC-CCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhh-------------cccCCCCCccCCChhhhcccc
Q psy6055 140 SPENSGIGG-PDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVV-------------DPISGRGYKLRRYKGKVLLIV 203 (307)
Q Consensus 140 ~~~~ft~ld-G~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~ll-------------fPcnQFG~QEpgs~~EI~~~l 203 (307)
.+++++++| |+.++|++|||||+||+| |||++| .+||.|+.+ ++++||+.||+++.++|++.+
T Consensus 18 pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~ 96 (207)
T 2r37_A 18 YEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTL 96 (207)
T ss_dssp GGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHH
T ss_pred CCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHH
Confidence 335666789 999999999999988777 999999 789887632 388999999998888999533
Q ss_pred ceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 204 HFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 204 ~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
++++|+.+|+++|||+.+++++|..+|++|++|+...+...+.+|.+ ..+.|.|...+.|+|||++||||++|+|+++|
T Consensus 97 ~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~-~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~ 175 (207)
T 2r37_A 97 KYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTS-DRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 175 (207)
T ss_dssp HHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCG-GGBCCSSCCTTCCCSTTCEEEECTTSCEEEEE
T ss_pred HhcchhhccCccceeeeEeccCCcccchHHHHHHhhCcccccccccc-ccccccccccCcccccceEEEECCCCcEEEEE
Confidence 33345558999999999999999999999999998765322233321 12345666667899999999999999999999
Q ss_pred cCCCCcccHHHHHHHHhhhhhh
Q psy6055 284 DASVEPSELEPDIVEELMKREE 305 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~~~~ 305 (307)
.+.+++++|+++|++||++.+.
T Consensus 176 ~g~~~~~~l~~~I~~ll~~~~~ 197 (207)
T 2r37_A 176 HHRTTVSNVKMDILSYMRRQAA 197 (207)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999987653
No 3
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=99.94 E-value=9.9e-27 Score=204.54 Aligned_cols=161 Identities=26% Similarity=0.398 Sum_probs=125.6
Q ss_pred CCCcccCC-CCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhh-------------cccCCCCCccCCChhhhccccc
Q psy6055 141 PENSGIGG-PDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVV-------------DPISGRGYKLRRYKGKVLLIVH 204 (307)
Q Consensus 141 ~~~ft~ld-G~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~ll-------------fPcnQFG~QEpgs~~EI~~~l~ 204 (307)
++++.+++ |+.++|++|+||++||.+ |||++|.+++|.|+.+ .+++||+.|++++.++|++.++
T Consensus 28 ~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~ 107 (208)
T 2f8a_A 28 AFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 107 (208)
T ss_dssp GCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHH
T ss_pred ceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHH
Confidence 35556688 999999999999888655 9999999999987633 2677787788888888885333
Q ss_pred eeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCcc----CCCccccccCCCCCCCCCCcccceEEEECCCCcEE
Q psy6055 205 FRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRI----GFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPV 280 (307)
Q Consensus 205 F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g----~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV 280 (307)
+++|+.+|+++||++.+++++|..++|+|++|+...+...+ .++.+ ....|.+...+.|+|+|++||||++|+|+
T Consensus 108 ~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~p~tflID~~G~i~ 186 (208)
T 2f8a_A 108 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDP-KLITWSPVCRNDVAWNFEKFLVGPDGVPL 186 (208)
T ss_dssp HTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSG-GGCCSSSCCTTCCCSTTCEEEECTTSCEE
T ss_pred hcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhcccc-ccccccccccCccccCceEEEEcCCCcEE
Confidence 33344489999999999999999999999999976542100 12211 11234454455799999999999999999
Q ss_pred EEecCCCCcccHHHHHHHHhhh
Q psy6055 281 ARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 281 ~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
.+|.+..++++|++.|++||++
T Consensus 187 ~~~~g~~~~~~l~~~I~~ll~~ 208 (208)
T 2f8a_A 187 RRYSRRFQTIDIEPDIEALLSQ 208 (208)
T ss_dssp EEECTTSCGGGGHHHHHHHHC-
T ss_pred EEeCCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999864
No 4
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=99.92 E-value=3.7e-25 Score=188.74 Aligned_cols=144 Identities=17% Similarity=0.243 Sum_probs=119.3
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-------------ccCCCCCccCCChhhhccccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-------------PISGRGYKLRRYKGKVLLIVH 204 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-------------PcnQFG~QEpgs~~EI~~~l~ 204 (307)
.++++.+++|+.++|++|+||++||.. +||++|..++|.|+.++ .+++|+.+|+++.++++ +
T Consensus 27 p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~---~ 103 (187)
T 3dwv_A 27 FDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIK---E 103 (187)
T ss_dssp GGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHH---H
T ss_pred CCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHH---H
Confidence 346667799999999999999988555 99999999999886432 45566666777788888 6
Q ss_pred eeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 205 FRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 205 F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
|++ ..|+++||++.++|++|..++++|++|+..... .++. ..|.|||+.||||++|+|+.+|.
T Consensus 104 ~~~--~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~---~~~~------------~~iP~~~~~~liD~~G~i~~~~~ 166 (187)
T 3dwv_A 104 FVC--TKFKAEFPIMAKINVNGENAHPLYEYMKKTKPG---ILAT------------KAIKWNFTSFLIDRDGVPVERFS 166 (187)
T ss_dssp SCC--BCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCC---SBSS------------SSCCSTTCEEEECTTSCEEEEEC
T ss_pred HHH--hccCCCCceeeccccCCcchhHHHHHHHhhcCC---ccCC------------CccccceeEEEECCCCCEEEEEC
Confidence 885 578999999999999999999999999998753 4443 26889999999999999999999
Q ss_pred CCCCcccHHHHHHHHhhhh
Q psy6055 285 ASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 285 p~~~P~eLe~dIekLL~~~ 303 (307)
+..++++|++.|+++|+.+
T Consensus 167 g~~~~~~l~~~i~~lL~~~ 185 (187)
T 3dwv_A 167 PGASVKDIEEKLIPLLGSA 185 (187)
T ss_dssp TTCCHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999753
No 5
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=99.90 E-value=2.1e-24 Score=182.26 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=116.0
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-------------ccCCCCCccCCChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-------------PISGRGYKLRRYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-------------PcnQFG~QEpgs~~EI~~~l~F 205 (307)
++++.+++|+.++|++|+||++||.. +||++|..++|.|+.++ .+++|+.+++++.++++ +|
T Consensus 20 ~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~---~~ 96 (180)
T 3kij_A 20 AFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVE---SF 96 (180)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHH---HH
T ss_pred ceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHH---HH
Confidence 35555689999999999999877555 99999999999886432 45556666667888888 68
Q ss_pred eecCCC-CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 206 RVSGKG-FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 206 ~~pg~~-ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
++ . ++++||++.+++++|..++++|+|++...+. .+.|||++||||++|+|+.+|.
T Consensus 97 ~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--------------------~p~~~~~~~lid~~G~i~~~~~ 153 (180)
T 3kij_A 97 AR---KNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKK--------------------EPRWNFWKYLVNPEGQVVKFWR 153 (180)
T ss_dssp HH---HHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHTC--------------------CCSSTTCEEEECTTSCEEEEEC
T ss_pred HH---HhcCCCCceeeeeeccCccccHHHHHHHhcCCC--------------------CccccceEEEECCCCCEEEEEC
Confidence 85 6 9999999999999999999999999987542 5889999999999999999999
Q ss_pred CCCCcccHHHHHHHHhhhh
Q psy6055 285 ASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 285 p~~~P~eLe~dIekLL~~~ 303 (307)
+..++++|+++|+++|++.
T Consensus 154 g~~~~~~l~~~i~~lL~~~ 172 (180)
T 3kij_A 154 PEEPIEVIRPDIAALVRQV 172 (180)
T ss_dssp TTCCGGGTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999988888654
No 6
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=99.87 E-value=8e-23 Score=173.10 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=113.2
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-------------ccCCCCCccCCChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-------------PISGRGYKLRRYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-------------PcnQFG~QEpgs~~EI~~~l~F 205 (307)
++++++++|+.++|++|+||++||.. +||++|.+++|.|+.++ .+++|+.||+++.++++ +|
T Consensus 31 ~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~---~~ 107 (181)
T 2p31_A 31 DFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIE---SF 107 (181)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHH---HH
T ss_pred ceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHH---HH
Confidence 35555689999999999999877555 99999999998876432 44555566666777888 68
Q ss_pred eecCCC-CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 206 RVSGKG-FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 206 ~~pg~~-ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
++ + ++++||++.++|++|..++++|+|+....+ ..++|||++||||++|+|+.+|.
T Consensus 108 ~~---~~~~~~~p~~~~~d~~g~~~~~~~~~~~~~~P--------------------~~~~~~~~~~lid~~G~i~~~~~ 164 (181)
T 2p31_A 108 AR---RTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSG--------------------KEPTWNFWKYLVAPDGKVVGAWD 164 (181)
T ss_dssp HH---HHHCCCSCBBCCCCCSSTTSCHHHHHHHHHHS--------------------CCCCSTTCEEEECTTSCEEEEEC
T ss_pred HH---hhcCCCceeEeecccCCccchhhhhhhhhcCC--------------------CccccceeEEEEcCCCCEEEEeC
Confidence 85 6 899999999999999999999999877654 26899999999999999999999
Q ss_pred CCCCcccHHHHHHHHhh
Q psy6055 285 ASVEPSELEPDIVEELM 301 (307)
Q Consensus 285 p~~~P~eLe~dIekLL~ 301 (307)
+..++++|++.|++||+
T Consensus 165 g~~~~~~l~~~i~~ll~ 181 (181)
T 2p31_A 165 PTVSVEEVRPQITALVR 181 (181)
T ss_dssp TTSCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999998873
No 7
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.5e-22 Score=165.02 Aligned_cols=144 Identities=20% Similarity=0.229 Sum_probs=103.0
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-cc------------CCCCCccCCChhhhccccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PI------------SGRGYKLRRYKGKVLLIVH 204 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-Pc------------nQFG~QEpgs~~EI~~~l~ 204 (307)
.++++++++|+.++|++++||++||.. +||++|. ++|.|+.++ .+ ++|+.++..+.++++ +
T Consensus 13 ~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~---~ 88 (171)
T 3cmi_A 13 YKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIA---Q 88 (171)
T ss_dssp GGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC---------------
T ss_pred eeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHH---H
Confidence 445666789999999999999877555 9999999 999886443 23 333334444556677 6
Q ss_pred eeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 205 FRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 205 F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
|++ .+++++||++...|.+|..++++|+++....- +..+. ..|.|||+.||||++|+|+.++.
T Consensus 89 ~~~--~~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~---~v~~~------------P~i~~~~~~~lid~~G~i~~~~~ 151 (171)
T 3cmi_A 89 FCQ--LNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKS---GMLGL------------RGIKWNFEKFLVDKKGKVYERYS 151 (171)
T ss_dssp --------CCCSCBBCCCBSSSTTBCHHHHHHHHHSC---CSSSC------------CSCCSTTCEEEECSSSCEEEEEC
T ss_pred HHH--hccCCCceEEeeccCCCccchHHHHHHHhccC---CcCCC------------CcccccceEEEECCCCCEEEEeC
Confidence 882 38899999998888999999999999986532 12232 16899999999999999999999
Q ss_pred CCCCcccHHHHHHHHhhhhh
Q psy6055 285 ASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 285 p~~~P~eLe~dIekLL~~~~ 304 (307)
+..++++|++.|+++|++++
T Consensus 152 g~~~~~~l~~~i~~ll~~~~ 171 (171)
T 3cmi_A 152 SLTKPSSLSETIEELLKEVE 171 (171)
T ss_dssp TTSCGGGGHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999998653
No 8
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=99.86 E-value=5.1e-22 Score=162.60 Aligned_cols=141 Identities=23% Similarity=0.313 Sum_probs=115.2
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-------------ccCCCCCccCCChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-------------PISGRGYKLRRYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-------------PcnQFG~QEpgs~~EI~~~l~F 205 (307)
++.+++++|+.++|++++||++||.. +||++|..++|.|+.++ .+++|+.+++++.++++ +|
T Consensus 13 ~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~---~~ 89 (169)
T 2v1m_A 13 EFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIK---KF 89 (169)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHH---HH
T ss_pred cceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHH---HH
Confidence 34555689999999999999887555 99999999998876432 44555556666777888 58
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
+. .+++++||++.++|++|..++++|++|+....+ ..+ ..|+|+|+.||||++|+|+.+|.+
T Consensus 90 ~~--~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~---~~~-------------~~i~~~P~~~lid~~G~i~~~~~g 151 (169)
T 2v1m_A 90 VT--EKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHG---TLT-------------NNIKWNFSKFLVDRQGQPVKRYSP 151 (169)
T ss_dssp HH--HHHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCC---SSS-------------CSCCSTTCEEEECTTSCEEEEECT
T ss_pred HH--HhcCCCCceEEEEeecCccccHHHHHHHhhcCC---ccC-------------CcccccceEEEECCCCCEEEEcCC
Confidence 31 378999999998999999999999999987532 222 148999999999999999999999
Q ss_pred CCCcccHHHHHHHHhhh
Q psy6055 286 SVEPSELEPDIVEELMK 302 (307)
Q Consensus 286 ~~~P~eLe~dIekLL~~ 302 (307)
..++++|++.|+++|++
T Consensus 152 ~~~~~~l~~~i~~ll~~ 168 (169)
T 2v1m_A 152 TTAPYDIEGDIMELLEK 168 (169)
T ss_dssp TSCGGGGHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 99999999999999964
No 9
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.5e-22 Score=169.72 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=113.7
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-------------ccCCCCCccCCChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-------------PISGRGYKLRRYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-------------PcnQFG~QEpgs~~EI~~~l~F 205 (307)
++++++++|+.++|++|+||++||.. +||++|.+++|.|+.++ .+++|+.|++++.++++ +|
T Consensus 31 ~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~---~~ 107 (185)
T 2gs3_A 31 EFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIK---EF 107 (185)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHH---HH
T ss_pred CceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHH---HH
Confidence 35556789999999999999887555 99999999998876432 44555556666777888 68
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
++ +++++||++.++|++|..++++|++|+...+. .+..+ ..|+|+|+.||||++|+|+.+|.+
T Consensus 108 ~~---~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~-~g~~~-------------~~i~~~P~~~lid~~G~i~~~~~g 170 (185)
T 2gs3_A 108 AA---GYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG-KGILG-------------NAIKWNFTKFLIDKNGCVVKRYGP 170 (185)
T ss_dssp HH---HTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGG-CCSSS-------------SSCCSSCCEEEECTTSCEEEEECT
T ss_pred HH---HcCCCCeeeeeeccCChhhhHHHHHHHhhccc-ccccC-------------CcccccceEEEECCCCCEEEeeCC
Confidence 84 89999999988999999999999999865420 01111 259999999999999999999999
Q ss_pred CCCcccHHHHHHHHh
Q psy6055 286 SVEPSELEPDIVEEL 300 (307)
Q Consensus 286 ~~~P~eLe~dIekLL 300 (307)
..++++|+++|+++|
T Consensus 171 ~~~~~~l~~~i~~lL 185 (185)
T 2gs3_A 171 MEEPLVIEKDLPHYF 185 (185)
T ss_dssp TSCGGGGGGGHHHHC
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999999999986
No 10
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=99.85 E-value=7.7e-22 Score=168.25 Aligned_cols=144 Identities=17% Similarity=0.250 Sum_probs=116.0
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-------------ccCCCCCccCCChhhhccccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-------------PISGRGYKLRRYKGKVLLIVH 204 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-------------PcnQFG~QEpgs~~EI~~~l~ 204 (307)
.++.+++++|+.++|++|+||++||.. +||++|.+++|.|+.++ .+.+|+.++.++.++++ +
T Consensus 29 p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~---~ 105 (190)
T 2vup_A 29 FDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIK---E 105 (190)
T ss_dssp GGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHH---H
T ss_pred cCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHH---H
Confidence 345566789999999999999888655 99999999998876432 33444445555677788 6
Q ss_pred ee-ecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 205 FR-VSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 205 F~-~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
|+ . +++++||++..+|.+|..++++|++|+..... ..+.| +|+|||+.||||++|+|+.+|
T Consensus 106 ~~~~---~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~---v~~~P------------~i~~~~~~~lid~~G~i~~~~ 167 (190)
T 2vup_A 106 FVCT---KFKAEFPIMAKINVNGENAHPLYEYMKKTKPG---ILKTK------------AIKWNFTSFLIDRDGVPVERF 167 (190)
T ss_dssp HHHH---HHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCC---GGGCC------------SCCSTTCEEEECTTSCEEEEE
T ss_pred HHHH---hcCCCeEEEeecccCcccccHHHHHHHhhcCC---cCCCc------------cccccceEEEECCCCcEEEEE
Confidence 88 5 78999999988899999999999999876421 22321 689999999999999999999
Q ss_pred cCCCCcccHHHHHHHHhhhhh
Q psy6055 284 DASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~~~ 304 (307)
.+..++++|++.|+++|++.+
T Consensus 168 ~g~~~~~~l~~~i~~ll~~~~ 188 (190)
T 2vup_A 168 SPGASVKDIEKKLIPLLESTQ 188 (190)
T ss_dssp CTTCCHHHHHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999998643
No 11
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=99.85 E-value=7.1e-22 Score=161.87 Aligned_cols=141 Identities=25% Similarity=0.290 Sum_probs=113.7
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-------------ccCCCCCccCCChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-------------PISGRGYKLRRYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-------------PcnQFG~QEpgs~~EI~~~l~F 205 (307)
++.+++++|+.++|++++||++||.. +||++|.+++|.|+.++ .+++|+.++.++.++++ +|
T Consensus 14 ~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~---~~ 90 (170)
T 2p5q_A 14 DFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQIT---DF 90 (170)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHH---HH
T ss_pred ceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHH---HH
Confidence 34555689999999999999887555 99999999998876432 34445555556677788 68
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
++ .+++++||++.++|.+|..++++|++|+.... +.++ ..|.|||+.||||++|+|+.++.+
T Consensus 91 ~~--~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~---~~~~-------------~~~p~~~~~~lid~~G~i~~~~~g 152 (170)
T 2p5q_A 91 VC--TRFKSEFPIFDKIDVNGENASPLYRFLKLGKW---GIFG-------------DDIQWNFAKFLVNKDGQVVDRYYP 152 (170)
T ss_dssp HH--HHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHH---HTTC-------------SCCCSTTCEEEECTTSCEEEEECT
T ss_pred HH--HhcCCCceeEeeeccCCCchHHHHHHHHhcCC---CccC-------------CcccccccEEEECCCCCEEEeeCC
Confidence 84 36899999999899999999999999986432 1221 268899999999999999999999
Q ss_pred CCCcccHHHHHHHHhhh
Q psy6055 286 SVEPSELEPDIVEELMK 302 (307)
Q Consensus 286 ~~~P~eLe~dIekLL~~ 302 (307)
..++++|++.|+++|++
T Consensus 153 ~~~~~~l~~~i~~ll~~ 169 (170)
T 2p5q_A 153 TTSPLSLERDIKQLLEI 169 (170)
T ss_dssp TSCGGGGHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 99999999999999975
No 12
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=99.84 E-value=8e-22 Score=166.50 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=112.4
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-------------ccCCCCCccCCChhhhccccce
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-------------PISGRGYKLRRYKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-------------PcnQFG~QEpgs~~EI~~~l~F 205 (307)
++++++++|+.++|++|+||++||.. +||++|..++|.|+.++ .+++|+.+|+++.++++ +|
T Consensus 29 ~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~---~~ 105 (183)
T 2obi_A 29 EFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIK---EF 105 (183)
T ss_dssp GCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHH---HH
T ss_pred ceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHH---HH
Confidence 35556789999999999999887555 99999999998875432 44555556666778888 68
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
++ +++++||++.++|++|..++++|++|+..... .+..+ ..|+|+|+.||||++|+|+.+|.+
T Consensus 106 ~~---~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~-~g~~~-------------~~i~~~P~~~lid~~G~i~~~~~g 168 (183)
T 2obi_A 106 AA---GYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG-KGILG-------------NAIKWNFTKFLIDKNGCVVKRYGP 168 (183)
T ss_dssp HH---TTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTT-CCSSS-------------SSCCSTTCEEEECTTSCEEEEECT
T ss_pred HH---HcCCCceEEeeeccCCcchhHHHHHhhccCCC-CCccc-------------ccccccceEEEECCCCCEEEEeCC
Confidence 84 89999999988999999999999999876531 01111 258999999999999999999999
Q ss_pred CCCcccHHHHHHHHh
Q psy6055 286 SVEPSELEPDIVEEL 300 (307)
Q Consensus 286 ~~~P~eLe~dIekLL 300 (307)
..++++|+++|++||
T Consensus 169 ~~~~~~l~~~i~~lL 183 (183)
T 2obi_A 169 MEEPLVIEKDLPHYF 183 (183)
T ss_dssp TSCTHHHHTTSGGGC
T ss_pred CCCHHHHHHHHHHhC
Confidence 999999998888765
No 13
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=99.59 E-value=1e-15 Score=124.13 Aligned_cols=131 Identities=15% Similarity=0.032 Sum_probs=96.3
Q ss_pred CCCCcccC--CCCcccCCCCCCCeEEEEc--CCCCCCcCc-chhhhhhc-ccCCCCCcc-----------CCChhhhccc
Q psy6055 140 SPENSGIG--GPDRIDGSRLRGPSHRSVG--TDHIVVPSR-LPSANVVD-PISGRGYKL-----------RRYKGKVLLI 202 (307)
Q Consensus 140 ~~~~ft~l--dG~~vdLS~yKGKVvLVVN--S~Cg~c~qe-~p~L~llf-PcnQFG~QE-----------pgs~~EI~~~ 202 (307)
+++.+..+ +|+.++|++++||++||.. +||++|.++ +|.|+.++ .+.+.+++. ..+.++++
T Consensus 7 P~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~-- 84 (158)
T 3eyt_A 7 PELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLK-- 84 (158)
T ss_dssp CCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHH--
T ss_pred CCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHH--
Confidence 34555554 7899999999999877544 999999997 99987554 455444443 23556677
Q ss_pred cceeecCCCCCccceeecccCCCCCCCC-hhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEE
Q psy6055 203 VHFRVSGKGFVPKFDVFGPGPVNGASEA-PLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVA 281 (307)
Q Consensus 203 l~F~~pg~~ygv~FPVf~KvdVNG~~ah-Plyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~ 281 (307)
+|++ +++++||++ +|.++.... .+.+ . | .|.+.++.||||++|+++.
T Consensus 85 -~~~~---~~~~~~~~~--~d~~~~~~~~~~~~----~-------~---------------~v~~~P~~~lid~~G~i~~ 132 (158)
T 3eyt_A 85 -AFLH---EYRIKFPVG--VDQPGDGAMPRTMA----A-------Y---------------QMRGTPSLLLIDKAGDLRA 132 (158)
T ss_dssp -HHHH---HTTCCSCEE--EECCCSSSSCHHHH----H-------T---------------TCCSSSEEEEECTTSEEEE
T ss_pred -HHHH---HcCCCceEE--EcCccchhhHHHHH----H-------c---------------CCCCCCEEEEECCCCCEEE
Confidence 6884 899999988 454443221 1222 1 1 2456679999999999999
Q ss_pred EecCCCCcccHHHHHHHHhhhhh
Q psy6055 282 RYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 282 Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
++.+..++++|++.|+++|++..
T Consensus 133 ~~~g~~~~~~l~~~i~~ll~~~~ 155 (158)
T 3eyt_A 133 HHFGDVSELLLGAEIATLLGEAA 155 (158)
T ss_dssp EEESCCCHHHHHHHHHHHHTSCC
T ss_pred EEeCCCCHHHHHHHHHHHhccCC
Confidence 99999999999999999998654
No 14
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=99.58 E-value=9.4e-16 Score=124.20 Aligned_cols=131 Identities=13% Similarity=0.004 Sum_probs=94.5
Q ss_pred CCCccc-CCCCcccCCCCCCCeEEEEc--CCCCCCcCc-chhhhhhc-ccCCCCCccC-----------CChhhhccccc
Q psy6055 141 PENSGI-GGPDRIDGSRLRGPSHRSVG--TDHIVVPSR-LPSANVVD-PISGRGYKLR-----------RYKGKVLLIVH 204 (307)
Q Consensus 141 ~~~ft~-ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe-~p~L~llf-PcnQFG~QEp-----------gs~~EI~~~l~ 204 (307)
++.+.. ++|+.++|++++||++||.. +||++|.++ +|.|+.++ .+.+.+++.. .+.++++ +
T Consensus 11 ~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~---~ 87 (160)
T 3lor_A 11 ELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALK---V 87 (160)
T ss_dssp CCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHH---H
T ss_pred CcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHH---H
Confidence 344444 79999999999999877555 999999997 99886554 4554444432 3456677 6
Q ss_pred eeecCCCCCccceeecccCCCCCC--CChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy6055 205 FRVSGKGFVPKFDVFGPGPVNGAS--EAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 205 F~~pg~~ygv~FPVf~KvdVNG~~--ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~R 282 (307)
|++ +++++||++. |.++.. ...+.+ .. .|..-++.||||++|+++.+
T Consensus 88 ~~~---~~~~~~~~~~--d~~~~~~~~~~~~~----~~----------------------~v~~~P~~~lid~~G~i~~~ 136 (160)
T 3lor_A 88 FID---EFGIKFPVAV--DMPREGQRIPSTMK----KY----------------------RLEGTPSIILADRKGRIRQV 136 (160)
T ss_dssp HHH---HTTCCSCEEE--ECCCTTCSSCHHHH----HT----------------------TCCSSSEEEEECTTSBEEEE
T ss_pred HHH---HcCCCCcEEE--CCccccchhhhHHH----hc----------------------ccCccceEEEECCCCcEEEE
Confidence 884 8999999883 433331 111222 11 24455789999999999999
Q ss_pred ecCCCCcccHHHHHHHHhhhhhh
Q psy6055 283 YDASVEPSELEPDIVEELMKREE 305 (307)
Q Consensus 283 y~p~~~P~eLe~dIekLL~~~~~ 305 (307)
+.+..++++|++.|+++|++.++
T Consensus 137 ~~g~~~~~~l~~~i~~ll~~~~~ 159 (160)
T 3lor_A 137 QFGQVDDFVLGLLLGSLLSETDE 159 (160)
T ss_dssp EESCCCHHHHHHHHHHHHTCC--
T ss_pred ecCcCCHHHHHHHHHHHHhccCC
Confidence 99999999999999999987553
No 15
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=99.54 E-value=3.6e-15 Score=120.90 Aligned_cols=132 Identities=10% Similarity=-0.004 Sum_probs=95.5
Q ss_pred CCCccc-CCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCC
Q psy6055 141 PENSGI-GGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 141 ~~~ft~-ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~y 212 (307)
.++|++ .+|+.++|++++||++||.. +||++|.+++|.|+.++ .+.+.+++.. ++.++++ +|++ .+
T Consensus 5 a~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~---~~~~---~~ 78 (151)
T 3raz_A 5 ADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIG---NFLK---QT 78 (151)
T ss_dssp --CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHH---HHHH---HS
T ss_pred cchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHH---HHHH---Hc
Confidence 345555 79999999999999887555 99999999999887654 5555555543 4456777 6884 89
Q ss_pred CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcccH
Q psy6055 213 VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSEL 292 (307)
Q Consensus 213 gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eL 292 (307)
+++||++. + .+.....+++ . ||. .|..-++.||||++|+++.++.+..++++|
T Consensus 79 ~~~~~~~~--~-~~~~~~~~~~----~-------~~~-------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l 131 (151)
T 3raz_A 79 PVSYPIWR--Y-TGANSRNFMK----T-------YGN-------------TVGVLPFTVVEAPKCGYRQTITGEVNEKSL 131 (151)
T ss_dssp CCSSCEEE--E-CCSCHHHHHH----T-------TTC-------------CSCCSSEEEEEETTTTEEEECCSCCCHHHH
T ss_pred CCCCceEe--c-CccchHHHHH----H-------hCC-------------ccCCCCEEEEECCCCcEEEEECCCCCHHHH
Confidence 99999984 2 2222323222 1 210 245557999999999999999999999999
Q ss_pred HHHHHHHhhhhhh
Q psy6055 293 EPDIVEELMKREE 305 (307)
Q Consensus 293 e~dIekLL~~~~~ 305 (307)
++.|++++...++
T Consensus 132 ~~~l~~l~~~~~~ 144 (151)
T 3raz_A 132 TDAVKLAHSKCRE 144 (151)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHhhc
Confidence 9999999876543
No 16
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=99.49 E-value=6.9e-15 Score=122.64 Aligned_cols=131 Identities=10% Similarity=-0.028 Sum_probs=77.6
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCC
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~y 212 (307)
++++...||+.++|++|+||++||+. +||++|..++|.|+.++ .+++.+.+.. ++.+.++ +|++ ++
T Consensus 12 dF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~---~~~~---~~ 85 (157)
T 4g2e_A 12 DFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNK---AFKE---HN 85 (157)
T ss_dssp CCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHH---HHHH---HT
T ss_pred CeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHH---HHHH---Hc
Confidence 34555689999999999999877554 89999999999987554 6777777764 3345566 6884 89
Q ss_pred CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC-----C
Q psy6055 213 VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS-----V 287 (307)
Q Consensus 213 gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~-----~ 287 (307)
+++||++. |.++. +.+ ..+ ... .....+ +..--..+.||||++|+|++++... .
T Consensus 86 ~~~~p~l~--D~~~~----v~~----~yg----v~~------~~~~~~-~~~~~~p~tflID~~G~I~~~~~~~~~~~~~ 144 (157)
T 4g2e_A 86 KLNFTILS--DYNRE----VVK----KYN----VAW------EFPALP-GYVLAKRAVFVIDKEGKVRYKWVSDDPTKEP 144 (157)
T ss_dssp TCCSEEEE--CTTSH----HHH----HTT----CEE------ECTTST-TCEEECEEEEEECTTSBEEEEEEESSTTCCC
T ss_pred CCcEEEEE--cCCcH----HHH----HcC----Ccc------ccccCC-CcceeeeeEEEECCCCEEEEEEECCCCCCCC
Confidence 99999984 44432 111 111 000 000000 0111234789999999999887432 2
Q ss_pred CcccHHHHHHH
Q psy6055 288 EPSELEPDIVE 298 (307)
Q Consensus 288 ~P~eLe~dIek 298 (307)
+.++|++.|++
T Consensus 145 ~~~eil~~l~~ 155 (157)
T 4g2e_A 145 PYDEIEKVVKS 155 (157)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 33455555544
No 17
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=99.49 E-value=1.2e-14 Score=118.04 Aligned_cols=144 Identities=14% Similarity=0.101 Sum_probs=95.6
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCC-CcCcchhhhhhc-ccCC----CCCccC--------CChhhhcccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIV-VPSRLPSANVVD-PISG----RGYKLR--------RYKGKVLLIV 203 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~-c~qe~p~L~llf-PcnQ----FG~QEp--------gs~~EI~~~l 203 (307)
+++++++.+|+.++|++++||++||.. +||++ |..++|.|+.++ .+.+ .+++.. .+.++++
T Consensus 4 p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~--- 80 (164)
T 2ggt_A 4 GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIA--- 80 (164)
T ss_dssp CCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHH---
T ss_pred CCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHH---
Confidence 345566789999999999999887555 99998 999999887554 3332 133321 2345577
Q ss_pred ceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 204 HFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 204 ~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
+|+. .++++||++. |.. .+..+ +.+..+ ..+.| ..-.......|.|+++.||||++|+++.+|
T Consensus 81 ~~~~---~~~~~~~~l~-----~~~-d~~~~-~~~~~~----v~~~p---~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 143 (164)
T 2ggt_A 81 NYVK---EFSPKLVGLT-----GTR-EEVDQ-VARAYR----VYYSP---GPKDEDEDYIVDHTIIMYLIGPDGEFLDYF 143 (164)
T ss_dssp HHHH---TTCSSCEEEE-----CCH-HHHHH-HHHTTT----CCEEE---EEECTTSCEEEEECCEEEEECTTSCEEEEE
T ss_pred HHHH---HcCCCeEEEe-----CCH-HHHHH-HHHhcC----eEEEe---cCCCCCCCeeEeccceEEEECCCCeEEEEe
Confidence 6884 8899999872 211 12111 222221 11110 000001111367888999999999999999
Q ss_pred cCCCCcccHHHHHHHHhhhh
Q psy6055 284 DASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~~ 303 (307)
.+..++++|+++|+++|++.
T Consensus 144 ~g~~~~~~l~~~l~~ll~~~ 163 (164)
T 2ggt_A 144 GQNKRKGEIAASIATHMRPY 163 (164)
T ss_dssp ETTCCHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999764
No 18
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=99.48 E-value=7e-14 Score=114.92 Aligned_cols=141 Identities=12% Similarity=0.150 Sum_probs=92.9
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCC-CCcCcchhhhhhc-ccCCCC--CccC--------CChhhhccccce
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHI-VVPSRLPSANVVD-PISGRG--YKLR--------RYKGKVLLIVHF 205 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg-~c~qe~p~L~llf-PcnQFG--~QEp--------gs~~EI~~~l~F 205 (307)
+++++++++|+.++|++++||++||.. +||+ +|..+++.|+.++ .+.+.| ++.. .+.++++ +|
T Consensus 14 p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~---~~ 90 (174)
T 1xzo_A 14 EPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLK---KF 90 (174)
T ss_dssp CCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHH---HH
T ss_pred CCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHH---HH
Confidence 345556789999999999999877555 9999 9999999887554 344444 4432 2345666 68
Q ss_pred eecCCCCCccc---eeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy6055 206 RVSGKGFVPKF---DVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 206 ~~pg~~ygv~F---PVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~R 282 (307)
+ .+++++| |++. + .+..-+-.|....... .++ .+.....+.+.++.||||++|+|+.+
T Consensus 91 ~---~~~~~~~~~~~~l~--d---~~~~~~~~~~~~~~~~---~~~--------~~~~~~~~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 91 A---ANYPLSFDNWDFLT--G---YSQSEIEEFALKSFKA---IVK--------KPEGEDQVIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp H---TTSCCCGGGEEEEB--C---SCHHHHHHHHHHHHCC---CCC--------CCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred H---HHcCCCCcceEEEe--C---CCHHHHHHHHHhhcCe---eEe--------ecCCCCeeeeeeEEEEECCCCeEEEE
Confidence 8 4899999 6652 2 1211111222111110 000 00111257788899999999999999
Q ss_pred ecCCC--CcccHHHHHHHHhhh
Q psy6055 283 YDASV--EPSELEPDIVEELMK 302 (307)
Q Consensus 283 y~p~~--~P~eLe~dIekLL~~ 302 (307)
|.+.. ++++|+++|++||++
T Consensus 152 ~~g~~~~~~~~l~~~l~~ll~~ 173 (174)
T 1xzo_A 152 YNGVENTPYDDIISDVKSASTL 173 (174)
T ss_dssp EESSSSCCHHHHHHHHHHHTCC
T ss_pred EcCCCCCCHHHHHHHHHHHHhc
Confidence 98876 467899999999863
No 19
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=99.47 E-value=1.6e-14 Score=120.85 Aligned_cols=129 Identities=7% Similarity=-0.036 Sum_probs=94.7
Q ss_pred CCCCCcccC--CCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCC------ccC----C--Chhhhcc
Q psy6055 139 ASPENSGIG--GPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGY------KLR----R--YKGKVLL 201 (307)
Q Consensus 139 ~~~~~ft~l--dG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~------QEp----g--s~~EI~~ 201 (307)
.+++.++++ +|+.++|++++||++||.. +||++|.+++|.|+.++ .+.+.|+ +.. . +.++++
T Consensus 37 ~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~- 115 (183)
T 3lwa_A 37 LPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQ- 115 (183)
T ss_dssp CCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHH-
T ss_pred CCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHH-
Confidence 344556678 9999999999999877555 99999999999886553 4555454 432 2 245566
Q ss_pred ccceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEE
Q psy6055 202 IVHFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVA 281 (307)
Q Consensus 202 ~l~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~ 281 (307)
+|++ .++++||++ .|.++... .. ++. -.|...++.||||++|+++.
T Consensus 116 --~~~~---~~~~~~~~~--~d~~~~~~--------~~-------~~~------------~~v~~~P~~~lid~~G~i~~ 161 (183)
T 3lwa_A 116 --DFVT---DNGLDYPSI--YDPPFMTA--------AS-------LGG------------VPASVIPTTIVLDKQHRPAA 161 (183)
T ss_dssp --HHHH---HTTCCSCEE--ECTTCGGG--------GG-------TTT------------CCTTCCSEEEEECTTSCEEE
T ss_pred --HHHH---HcCCCccEE--ECCcchHH--------HH-------hcc------------CCCCCCCeEEEECCCCcEEE
Confidence 6884 899999998 34333322 11 110 13566678999999999999
Q ss_pred EecCCCCcccHHHHHHHHhhh
Q psy6055 282 RYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 282 Ry~p~~~P~eLe~dIekLL~~ 302 (307)
+|.+..++++|++.|+++|++
T Consensus 162 ~~~g~~~~~~l~~~l~~ll~~ 182 (183)
T 3lwa_A 162 VFLREVTSKDVLDVALPLVDE 182 (183)
T ss_dssp EECSCCCHHHHHHHHHHHHHC
T ss_pred EEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999975
No 20
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=99.47 E-value=3.6e-14 Score=115.08 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=94.9
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC-----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR-----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp-----gs~~EI~~~l~F~~pg~~ 211 (307)
+++.+.+++|+.++|++++||++||.- +||++|..++|.|+.+. .+.+.+++.. .+.++++ +|+. +
T Consensus 15 p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~---~~~~---~ 88 (165)
T 3or5_A 15 PSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVK---NYMK---T 88 (165)
T ss_dssp CCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHH---HHHH---H
T ss_pred CCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHH---HHHH---H
Confidence 445556789999999999999887555 89999999999886543 4555555542 2245556 6874 7
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE 291 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e 291 (307)
++++||++..- ..+.+.+..... ..|..-++.||||++|+++.++.+..++++
T Consensus 89 ~~~~~~~~~~~-------~~~~~~~~~~~~--------------------~~i~~~P~~~lid~~G~i~~~~~g~~~~~~ 141 (165)
T 3or5_A 89 QGIIYPVMMAT-------PELIRAFNGYID--------------------GGITGIPTSFVIDASGNVSGVIVGPRSKAD 141 (165)
T ss_dssp HTCCSCEEECC-------HHHHHHHHTTST--------------------TCSCSSSEEEEECTTSBEEEEECSCCCHHH
T ss_pred cCCCCceEecC-------HHHHHHHhhhhc--------------------cCCCCCCeEEEECCCCcEEEEEcCCCCHHH
Confidence 89999998411 133333322111 136667899999999999999999999999
Q ss_pred HHHHHHHHhhhhhh
Q psy6055 292 LEPDIVEELMKREE 305 (307)
Q Consensus 292 Le~dIekLL~~~~~ 305 (307)
|++.|+++|++..+
T Consensus 142 l~~~l~~~l~~~~~ 155 (165)
T 3or5_A 142 FDRIVKMALGAKAA 155 (165)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHhhhcc
Confidence 99999999986543
No 21
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=99.47 E-value=4e-14 Score=116.03 Aligned_cols=147 Identities=10% Similarity=0.013 Sum_probs=96.9
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCC-CcCcchhhhhhc-ccCC----CCCccC--------CChhhhcccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIV-VPSRLPSANVVD-PISG----RGYKLR--------RYKGKVLLIV 203 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~-c~qe~p~L~llf-PcnQ----FG~QEp--------gs~~EI~~~l 203 (307)
+++++.+++|+.++|++++||++||.. +||++ |..++|.|+.++ .+.+ .+++.. .+.++++
T Consensus 7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~--- 83 (171)
T 2rli_A 7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMA--- 83 (171)
T ss_dssp SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHH---
T ss_pred CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHH---
Confidence 445666789999999999999877544 99998 999999887654 3421 234431 2345666
Q ss_pred ceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 204 HFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 204 ~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
+|++ +++++|+++. +.. ....+ +.+..+ ..+.| ..-.....-.+.|.++.||||++|+|+.+|
T Consensus 84 ~~~~---~~~~~~~~l~-----~~~-~~~~~-~~~~~~----v~~~p---~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 146 (171)
T 2rli_A 84 RYVQ---DFHPRLLGLT-----GST-KQVAQ-ASHSYR----VYYNA---GPKDEDQDYIVDHSIAIYLLNPDGLFTDYY 146 (171)
T ss_dssp HHHH---TTCTTCCEEE-----CCH-HHHHH-HHHHSC----CCCEE---CCCCSSCCCCEECCCEEEEECTTSCEEEEE
T ss_pred HHHH---HcCCCeEEEe-----CCH-HHHHH-HHHHhC----eEEEe---cCCCCCCCeEEeccceEEEECCCCeEEEEE
Confidence 6884 8899998873 211 01111 222221 11100 000000111366777999999999999999
Q ss_pred cCCCCcccHHHHHHHHhhhhhhc
Q psy6055 284 DASVEPSELEPDIVEELMKREER 306 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~~~~~ 306 (307)
.+..++++|+++|+++|++.+.+
T Consensus 147 ~g~~~~~~l~~~l~~ll~~~~~~ 169 (171)
T 2rli_A 147 GRSRSAEQISDSVRRHMAAFRSV 169 (171)
T ss_dssp ESSCCHHHHHHHHHHHHHHHCCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876643
No 22
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.46 E-value=1.6e-14 Score=120.81 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=92.4
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC----C--ChhhhccccceeecCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR----R--YKGKVLLIVHFRVSGK 210 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp----g--s~~EI~~~l~F~~pg~ 210 (307)
.++++++++|+.++|++++||++||.- +||++|.+++|.|+.++ .+.+.+++.. . +.++++ +|++
T Consensus 41 p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~---~~~~--- 114 (186)
T 1jfu_A 41 PDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPK---TFLK--- 114 (186)
T ss_dssp CCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHH---HHHH---
T ss_pred CCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHH---HHHH---
Confidence 445666789999999999999877544 89999999999887554 4444445442 1 224566 5774
Q ss_pred CCCc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCC-
Q psy6055 211 GFVP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVE- 288 (307)
Q Consensus 211 ~ygv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~- 288 (307)
++++ .||++. | ..+.+++.+.... .+...++.||||++|+|+.+|.+..+
T Consensus 115 ~~~~~~~~~~~--d----~~~~~~~~~~~~~----------------------~~~~~P~~~lid~~G~i~~~~~g~~~~ 166 (186)
T 1jfu_A 115 EANLTRLGYFN--D----QKAKVFQDLKAIG----------------------RALGMPTSVLVDPQGCEIATIAGPAEW 166 (186)
T ss_dssp HTTCCTTCCEE--C----TTCHHHHHHHTTT----------------------CCSSSSEEEEECTTSBEEEEEESCCCT
T ss_pred HcCCCCCceEE--C----CcchHHHHhcccc----------------------ccCCCCEEEEECCCCCEEEEEecCCcc
Confidence 7888 599884 2 2245666554321 12344699999999999999988765
Q ss_pred -cccHHHHHHHHhhhh
Q psy6055 289 -PSELEPDIVEELMKR 303 (307)
Q Consensus 289 -P~eLe~dIekLL~~~ 303 (307)
.++|++.|+++|++.
T Consensus 167 ~~~~l~~~l~~ll~~~ 182 (186)
T 1jfu_A 167 ASEDALKLIRAATGKA 182 (186)
T ss_dssp TSHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHhccc
Confidence 678999999999754
No 23
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.44 E-value=4.3e-14 Score=113.57 Aligned_cols=128 Identities=11% Similarity=0.072 Sum_probs=95.4
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC------CChhhhccccceeecCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR------RYKGKVLLIVHFRVSGK 210 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp------gs~~EI~~~l~F~~pg~ 210 (307)
+++.+.+++|+.++|++++||++||+. +||+.|.+++|.|+.+. .+.+.+++.. .+.++++ +|++
T Consensus 9 p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~---~~~~--- 82 (153)
T 2l5o_A 9 PAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVR---QYVK--- 82 (153)
T ss_dssp CSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHH---HHHH---
T ss_pred CCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHH---HHHH---
Confidence 445566789999999999999887655 89999999998886543 3444445442 3456677 6884
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
.++++||+.. +.+ ..+.+ . | .|.+.++.||||++|+++.+|.+..+++
T Consensus 83 ~~~~~~~~~~--d~~----~~~~~----~-------~---------------~i~~~P~~~lid~~G~i~~~~~g~~~~~ 130 (153)
T 2l5o_A 83 DYGLPFTVMY--DAD----KAVGQ----A-------F---------------GTQVYPTSVLIGKKGEILKTYVGEPDFG 130 (153)
T ss_dssp HTTCCSEEEE--CSS----CHHHH----H-------H---------------TCCSSSEEEEECSSSCCCEEEESSCCHH
T ss_pred HcCCCceEEc--Cch----HHHHH----H-------c---------------CCCccCeEEEECCCCcEEEEEcCCCCHH
Confidence 8899999873 211 12222 1 1 3567789999999999999999999999
Q ss_pred cHHHHHHHHhhhhhh
Q psy6055 291 ELEPDIVEELMKREE 305 (307)
Q Consensus 291 eLe~dIekLL~~~~~ 305 (307)
+|++.|+++|.+..+
T Consensus 131 ~l~~~l~~ll~~~~~ 145 (153)
T 2l5o_A 131 KLYQEIDTAWRNSDA 145 (153)
T ss_dssp HHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999986554
No 24
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=1.3e-13 Score=111.49 Aligned_cols=126 Identities=10% Similarity=-0.035 Sum_probs=92.3
Q ss_pred CCCCCcccCCCCcccCC--CCCCCeEEEEc--CCCCC--CcCcchhhhhhc-cc-CCCCCccC-----CChhhhccccce
Q psy6055 139 ASPENSGIGGPDRIDGS--RLRGPSHRSVG--TDHIV--VPSRLPSANVVD-PI-SGRGYKLR-----RYKGKVLLIVHF 205 (307)
Q Consensus 139 ~~~~~ft~ldG~~vdLS--~yKGKVvLVVN--S~Cg~--c~qe~p~L~llf-Pc-nQFG~QEp-----gs~~EI~~~l~F 205 (307)
.+++.+.+++|+.++|+ +++||++||.- +||++ |..++|.|+.++ .+ .+.+++.. .+.++++ +|
T Consensus 11 ~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~---~~ 87 (150)
T 3fw2_A 11 APFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWK---DA 87 (150)
T ss_dssp CCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHH---HH
T ss_pred CCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHH---HH
Confidence 34466667999999999 99999877444 99999 999999987654 55 55566543 2235677 68
Q ss_pred eecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 206 RVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 206 ~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
++ +++++||++ .|..+.+ ..+. +. | .|...++.||||++|+++.++.
T Consensus 88 ~~---~~~~~~~~~--~d~~~~~-~~~~----~~-------~---------------~v~~~P~~~lid~~G~i~~~~~- 134 (150)
T 3fw2_A 88 IK---RDTLDWEQV--CDFGGLN-SEVA----KQ-------Y---------------SIYKIPANILLSSDGKILAKNL- 134 (150)
T ss_dssp HH---HTTCCSEEE--CCSCGGG-CHHH----HH-------T---------------TCCSSSEEEEECTTSBEEEESC-
T ss_pred HH---HhCCCceEE--EcCcccc-hHHH----HH-------c---------------CCCccCeEEEECCCCEEEEccC-
Confidence 84 899999998 3332211 1222 21 1 2456679999999999999995
Q ss_pred CCCcccHHHHHHHHhhh
Q psy6055 286 SVEPSELEPDIVEELMK 302 (307)
Q Consensus 286 ~~~P~eLe~dIekLL~~ 302 (307)
++++|++.|+++|++
T Consensus 135 --~~~~l~~~l~~ll~~ 149 (150)
T 3fw2_A 135 --RGEELKKKIENIVEE 149 (150)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhc
Confidence 788999999999975
No 25
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=99.44 E-value=4e-14 Score=119.90 Aligned_cols=141 Identities=12% Similarity=0.105 Sum_probs=93.1
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc---CCCC-CCcCcchhhhhhc-ccCCCC--CccC--------CChhhhccccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG---TDHI-VVPSRLPSANVVD-PISGRG--YKLR--------RYKGKVLLIVH 204 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg-~c~qe~p~L~llf-PcnQFG--~QEp--------gs~~EI~~~l~ 204 (307)
+++++++.+|++++|++||||++| || |||+ .|..+++.|..++ .+.+.| ++.. .+.+.++ +
T Consensus 13 PdF~L~d~~G~~v~l~d~~Gk~vl-l~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~---~ 88 (170)
T 4hde_A 13 ETFQFTNQDGKPFGTKDLKGKVWV-ADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLK---A 88 (170)
T ss_dssp CCCEEECTTSCEEEHHHHTTSCEE-EEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHH---H
T ss_pred CCcEEECCCCCEEeHHHhCCCEEE-EEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHH---H
Confidence 456666789999999999999877 67 9995 7988887775443 122222 3321 2346677 6
Q ss_pred eeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 205 FRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 205 F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
|+ ..|+.+++-+ .-+.|.....+.+..+..... ... ......|....+.||||++|+|+.+|.
T Consensus 89 y~---~~~~~~~~~~--~~ltg~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~H~~~~~liD~~G~i~~~~~ 151 (170)
T 4hde_A 89 FI---QKFTEDTSNW--NLLTGYSLEDITKFSKDNFQS---LVD---------KPENGQVIHGTSFYLIDQNGKVMKKYS 151 (170)
T ss_dssp HH---TTTCSCCTTE--EEEBCSCHHHHHHHHHHHHCC---CCB---------CCTTSCCBCCCEEEEECTTSCEEEEEE
T ss_pred HH---HHcCCCCCCc--eecCcccHHHHHHHHHhcccc---ccc---------CCCCceEEeeeEEEEEcCCCeEEEEEC
Confidence 88 4888877643 224566655566665544321 011 111234556668899999999999997
Q ss_pred CC--CCcccHHHHHHHHhh
Q psy6055 285 AS--VEPSELEPDIVEELM 301 (307)
Q Consensus 285 p~--~~P~eLe~dIekLL~ 301 (307)
+. .+.++|.++|++||+
T Consensus 152 g~~~~~~~~l~~~ik~Lle 170 (170)
T 4hde_A 152 GISNTPYEDIIRDMKRLAE 170 (170)
T ss_dssp SSSSCCHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 64 344689999999874
No 26
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=99.40 E-value=7.3e-14 Score=117.87 Aligned_cols=136 Identities=10% Similarity=0.004 Sum_probs=89.3
Q ss_pred CCCCcccCCCCcccCCCC--CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecC
Q psy6055 140 SPENSGIGGPDRIDGSRL--RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSG 209 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~y--KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg 209 (307)
+++++.+.||+.++|++| |||++||+. +||++|..++|.|+.++ .+.+.|.+.. ++.+.++ +|+.
T Consensus 12 PdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~---~~~~-- 86 (164)
T 4gqc_A 12 PDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLK---KFKD-- 86 (164)
T ss_dssp CCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHH---HHHH--
T ss_pred cCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHH---HHHH--
Confidence 345555689999999999 999877665 89999999999987554 6777777764 3445566 6884
Q ss_pred CCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC----
Q psy6055 210 KGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA---- 285 (307)
Q Consensus 210 ~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p---- 285 (307)
+++++||++. |-++. +.+ ..+ .++.. .... ..-=..+.||||++|+|++++..
T Consensus 87 -~~~~~fp~l~--D~~~~----v~~----~yg----v~~~~-----~~~~---~~~~~p~tflID~~G~I~~~~~~~~~~ 143 (164)
T 4gqc_A 87 -ENRLAFNLLS--DYNRE----VIK----LYN----VYHED-----LKGL---KMVAKRAVFIVKPDGTVAYKWVTDNPL 143 (164)
T ss_dssp -HTTCCSEEEE--CTTSH----HHH----HTT----CEEEE-----ETTE---EEEECCEEEEECTTSBEEEEEECSCTT
T ss_pred -hcCcccceee--cCchH----HHH----HcC----Ccccc-----cccC---cCCeeeEEEEECCCCEEEEEEEeCCCC
Confidence 8999999984 44332 111 111 11100 0000 00001378999999999988743
Q ss_pred -CCCcccHHHHHHHHhhhh
Q psy6055 286 -SVEPSELEPDIVEELMKR 303 (307)
Q Consensus 286 -~~~P~eLe~dIekLL~~~ 303 (307)
..+.+++.+.|++|+.+.
T Consensus 144 ~~~~~~eil~~l~~l~~e~ 162 (164)
T 4gqc_A 144 NEPDYDEVVREANKIAGEL 162 (164)
T ss_dssp CCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhccc
Confidence 224567788888887653
No 27
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=99.39 E-value=3e-13 Score=109.64 Aligned_cols=128 Identities=9% Similarity=-0.059 Sum_probs=90.3
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC-----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR-----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp-----gs~~EI~~~l~F~~pg~~ 211 (307)
.++++.+++|+.++|++++||++||+. +||++|.+++|.|+.++ .+.+.+++.. .+.++++ +|+. +
T Consensus 10 p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~---~~~~---~ 83 (152)
T 2lrn_A 10 PAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWK---KAIE---E 83 (152)
T ss_dssp CCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHH---HHHH---H
T ss_pred CCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHH---HHHH---H
Confidence 345556789999999999999877555 89999999999887554 4555555542 2345566 5774 7
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE 291 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e 291 (307)
++++||++. |.. ..-.-+.+.. .|..-++.||||++|+++.++ ..+++
T Consensus 84 ~~~~~~~~~--d~~-----~~~~~~~~~~----------------------~v~~~P~~~lid~~G~i~~~~---~~~~~ 131 (152)
T 2lrn_A 84 DKSYWNQVL--LQK-----DDVKDVLESY----------------------CIVGFPHIILVDPEGKIVAKE---LRGDD 131 (152)
T ss_dssp HTCCSEEEE--ECH-----HHHHHHHHHT----------------------TCCSSCEEEEECTTSEEEEEC---CCTTH
T ss_pred hCCCCeEEe--ccc-----chhHHHHHHh----------------------CCCcCCeEEEECCCCeEEEee---CCHHH
Confidence 888999883 210 0011222222 233446899999999999998 36789
Q ss_pred HHHHHHHHhhhhhh
Q psy6055 292 LEPDIVEELMKREE 305 (307)
Q Consensus 292 Le~dIekLL~~~~~ 305 (307)
|++.|++++++.++
T Consensus 132 l~~~l~~l~~~~~~ 145 (152)
T 2lrn_A 132 LYNTVEKFVNGAKE 145 (152)
T ss_dssp HHHHHHHHHTSSSS
T ss_pred HHHHHHHHHhhccc
Confidence 99999999987665
No 28
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=99.38 E-value=9.3e-14 Score=110.61 Aligned_cols=124 Identities=10% Similarity=-0.043 Sum_probs=85.0
Q ss_pred CCCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhh---hc-ccCCCCCccC-----CChhhhccccceee
Q psy6055 139 ASPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANV---VD-PISGRGYKLR-----RYKGKVLLIVHFRV 207 (307)
Q Consensus 139 ~~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~l---lf-PcnQFG~QEp-----gs~~EI~~~l~F~~ 207 (307)
.+++.+++++|+.++|++++||++||.- +||++|.+++|.|+. ++ .+.+.+++.. .+.++++ +|+
T Consensus 7 ~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~---~~~- 82 (142)
T 3ewl_A 7 AADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWA---TKA- 82 (142)
T ss_dssp CCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHH---HHH-
T ss_pred CCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHH---HHH-
Confidence 3445666789999999999999877544 899999999887754 32 4444455542 2345566 688
Q ss_pred cCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC
Q psy6055 208 SGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV 287 (307)
Q Consensus 208 pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~ 287 (307)
.+++++||++ .|.++. +.. .. .| .|.+.++.||||++|+++.+ ..
T Consensus 83 --~~~~~~~~~~--~d~~~~--------~~~-~~----~~---------------~v~~~P~~~lid~~G~i~~~---~~ 127 (142)
T 3ewl_A 83 --VYMPQGWIVG--WNKAGD--------IRT-RQ----LY---------------DIRATPTIYLLDGRKRVILK---DT 127 (142)
T ss_dssp --TTSCTTCEEE--ECTTCH--------HHH-TT----CS---------------CCCSSSEEEEECTTCBEEEC---SC
T ss_pred --HHcCCCccee--eCCccc--------hhh-HH----Hc---------------CCCCCCeEEEECCCCCEEec---CC
Confidence 5899999998 333322 111 00 12 36777899999999999984 46
Q ss_pred CcccHHHHHHHHhh
Q psy6055 288 EPSELEPDIVEELM 301 (307)
Q Consensus 288 ~P~eLe~dIekLL~ 301 (307)
+.++|++.|++++.
T Consensus 128 ~~~~l~~~l~~~~~ 141 (142)
T 3ewl_A 128 SMEQLIDYLATQAG 141 (142)
T ss_dssp CHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHcc
Confidence 67788888877654
No 29
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=99.38 E-value=3e-13 Score=118.33 Aligned_cols=126 Identities=10% Similarity=-0.009 Sum_probs=89.2
Q ss_pred CCCCcccCCCCcccCCCCCCCe-EEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC------------CChhhhcccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPS-HRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR------------RYKGKVLLIV 203 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKV-vLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp------------gs~~EI~~~l 203 (307)
+++++++++|+.++|++++||. +||.. +||++|..++|.|+.++ .+.+.|++.. ++.++++
T Consensus 39 P~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~--- 115 (218)
T 3u5r_E 39 ADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVG--- 115 (218)
T ss_dssp CCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHH---
T ss_pred CCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHH---
Confidence 4466667999999999999995 55444 89999999999987553 4555444431 3455666
Q ss_pred ceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 204 HFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 204 ~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
+|++ +++++||++. |.++ .+. +. | .|...++.||||++|+|+++.
T Consensus 116 ~~~~---~~~~~~~~l~--D~~~----~~~----~~-------~---------------~v~~~P~~~liD~~G~i~~~g 160 (218)
T 3u5r_E 116 AEVK---AYGYGFPYLK--DASQ----SVA----KA-------Y---------------GAACTPDFFLYDRERRLVYHG 160 (218)
T ss_dssp HHHH---HHTCCSCEEE--CTTC----HHH----HH-------H---------------TCCEESEEEEECTTCBEEEEE
T ss_pred HHHH---HhCCCccEEE--CCcc----HHH----HH-------c---------------CCCCCCeEEEECCCCcEEEec
Confidence 6884 8899999984 3222 122 11 1 244557999999999999875
Q ss_pred c---------CCCCcccHHHHHHHHhhhh
Q psy6055 284 D---------ASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 284 ~---------p~~~P~eLe~dIekLL~~~ 303 (307)
. +..+.++|++.|+++|+..
T Consensus 161 ~~d~~~~~~~~~~~~~~l~~~i~~ll~~~ 189 (218)
T 3u5r_E 161 QFDDARPGNGKDVTGADLRAAVDAVLKGK 189 (218)
T ss_dssp CSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred cccccccccccccCHHHHHHHHHHHHcCC
Confidence 3 2345678999999999754
No 30
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=99.38 E-value=1.2e-13 Score=111.37 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=92.1
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC-----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR-----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp-----gs~~EI~~~l~F~~pg~~ 211 (307)
+++.+.+++|+.++|++++||++||.- +||++|.+++|.|+.+. .+.+.+++.. .+.++++ +|++ .
T Consensus 7 p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~---~~~~---~ 80 (151)
T 2f9s_A 7 PNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVH---NFMK---S 80 (151)
T ss_dssp CCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHH---HHHH---H
T ss_pred CcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHH---HHHH---H
Confidence 345556789999999999999877555 89999999998886543 3443344432 2345666 6874 7
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE 291 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e 291 (307)
++++||++. |-++ .+ .... .|.+.++.||||++|+++.++.+..++++
T Consensus 81 ~~~~~~~~~--d~~~----~~----~~~~----------------------~v~~~P~~~lid~~G~i~~~~~G~~~~~~ 128 (151)
T 2f9s_A 81 YGVNFPVVL--DTDR----QV----LDAY----------------------DVSPLPTTFLINPEGKVVKVVTGTMTESM 128 (151)
T ss_dssp HTCCSCEEE--ETTS----HH----HHHT----------------------TCCSSCEEEEECTTSEEEEEEESCCCHHH
T ss_pred cCCCceEEE--CCch----HH----HHhc----------------------CCCCCCeEEEECCCCcEEEEEeCCCCHHH
Confidence 889999983 3221 12 2221 25566799999999999999999999999
Q ss_pred HHHHHHHHhhhhhh
Q psy6055 292 LEPDIVEELMKREE 305 (307)
Q Consensus 292 Le~dIekLL~~~~~ 305 (307)
|++.|+++|+...+
T Consensus 129 l~~~l~~ll~~~~~ 142 (151)
T 2f9s_A 129 IHDYMNLIKPGETS 142 (151)
T ss_dssp HHHHHHHHSCC---
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999986543
No 31
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=99.37 E-value=1.1e-13 Score=115.13 Aligned_cols=112 Identities=7% Similarity=-0.143 Sum_probs=76.3
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhcccCCCCCccC----CChhhhccccceeecCCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVDPISGRGYKLR----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llfPcnQFG~QEp----gs~~EI~~~l~F~~pg~~y 212 (307)
+++++++++|+.++|++|+||++||+. +||+.|..++|.|+.++.- .+++.. ++.++++ +|++ ++
T Consensus 27 P~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~---~~~~---~~ 98 (166)
T 3p7x_A 27 PDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQK---RWCA---SA 98 (166)
T ss_dssp CCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHH---HHHH---HH
T ss_pred CCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHH---HHHH---Hc
Confidence 445556789999999999999877544 6999999999999877643 455553 3456676 6884 88
Q ss_pred Cc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 213 VP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 213 gv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
++ +||++. |.++...+..|...... .--..++.||||++|+|+.++.
T Consensus 99 ~~~~~~~l~--D~~~~~~~~~~gv~~~~-----------------------~g~~~p~~~liD~~G~i~~~~~ 146 (166)
T 3p7x_A 99 GLDNVITLS--DHRDLSFGENYGVVMEE-----------------------LRLLARAVFVLDADNKVVYKEI 146 (166)
T ss_dssp TCSSCEEEE--CTTTCHHHHHHTCEETT-----------------------TTEECCEEEEECTTCBEEEEEE
T ss_pred CCCceEEcc--CCchhHHHHHhCCcccc-----------------------CCceeeEEEEECCCCeEEEEEE
Confidence 99 899994 44222222222111000 0012578999999999999964
No 32
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=99.36 E-value=2.3e-13 Score=114.46 Aligned_cols=127 Identities=9% Similarity=-0.037 Sum_probs=90.5
Q ss_pred CCCCCcc-cCCCCcccCCCCCCCe-EEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC------------CChhhhcc
Q psy6055 139 ASPENSG-IGGPDRIDGSRLRGPS-HRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR------------RYKGKVLL 201 (307)
Q Consensus 139 ~~~~~ft-~ldG~~vdLS~yKGKV-vLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp------------gs~~EI~~ 201 (307)
..++.+. +++|+.++|++++||+ +||+. +||++|..++|.|+.++ .+.+.+++.. .+.++++
T Consensus 24 ~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~- 102 (196)
T 2ywi_A 24 APPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMK- 102 (196)
T ss_dssp CCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHH-
T ss_pred CCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHH-
Confidence 3456667 7899999999999996 55444 89999999998886543 3444344331 3445666
Q ss_pred ccceeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEE
Q psy6055 202 IVHFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVA 281 (307)
Q Consensus 202 ~l~F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~ 281 (307)
+|++ +++++||++. |.++ .+.+.+ .|..-++.||||++|+++.
T Consensus 103 --~~~~---~~~~~~~~~~--d~~~----~~~~~~--------------------------~v~~~P~~~lid~~G~i~~ 145 (196)
T 2ywi_A 103 --KVAE---ELGYPFPYLY--DETQ----EVAKAY--------------------------DAACTPDFYIFDRDLKCVY 145 (196)
T ss_dssp --HHHH---HHTCCSCEEE--CSSC----HHHHHH--------------------------TCCEESEEEEEETTCBEEE
T ss_pred --HHHH---HcCCCceEEE--CCch----HHHHHh--------------------------CCCCCCeEEEEcCCCeEEE
Confidence 6884 7899999884 3222 222211 1334468899999999999
Q ss_pred E---------ecCCCCcccHHHHHHHHhhhh
Q psy6055 282 R---------YDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 282 R---------y~p~~~P~eLe~dIekLL~~~ 303 (307)
+ +.+..++++|++.|+++|++.
T Consensus 146 ~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 146 RGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp EECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred ccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 9 556778899999999999754
No 33
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=99.35 E-value=2.1e-13 Score=111.78 Aligned_cols=117 Identities=11% Similarity=-0.015 Sum_probs=76.9
Q ss_pred cccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCCCcc
Q psy6055 144 SGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGFVPK 215 (307)
Q Consensus 144 ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~ygv~ 215 (307)
+...+|++++|++++||++||+- +||+.|..++|.|+.++ .+.+.|++.. ++.++++ +|++ +++++
T Consensus 20 l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~---~~~~---~~~~~ 93 (163)
T 3gkn_A 20 LSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHD---NFCA---KQGFA 93 (163)
T ss_dssp EECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHH---HHHH---HHCCS
T ss_pred ccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH---HHHH---HhCCC
Confidence 55689999999999999766444 79999999999997654 5666677654 3456677 6884 88999
Q ss_pred ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC
Q psy6055 216 FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 216 FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
||++. |.++ .+.+ ..+ ..... .........+.++.||||++|+|+.+|.+.
T Consensus 94 ~~~~~--d~~~----~~~~----~~~----v~~~~------~~~~~~~~~~~p~~~lid~~G~i~~~~~~~ 144 (163)
T 3gkn_A 94 FPLVS--DGDE----ALCR----AFD----VIKEK------NMYGKQVLGIERSTFLLSPEGQVVQAWRKV 144 (163)
T ss_dssp SCEEE--CTTC----HHHH----HTT----CEEEE------EETTEEEEEECCEEEEECTTSCEEEEECSC
T ss_pred ceEEE--CCcH----HHHH----HhC----Ccccc------ccccccccCcceEEEEECCCCeEEEEEcCC
Confidence 99984 3322 2222 111 11000 000000111267999999999999999443
No 34
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=99.34 E-value=6.5e-13 Score=111.49 Aligned_cols=125 Identities=14% Similarity=0.033 Sum_probs=88.2
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCcc------------CCChhhhccccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKL------------RRYKGKVLLIVH 204 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QE------------pgs~~EI~~~l~ 204 (307)
.++++++++|+.++|++++||++||.. +||++|.+++|.|+.++ .+.+. ++. ..+.++++ +
T Consensus 14 p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~~~~~~---~ 89 (188)
T 2cvb_A 14 IDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAPEKMA---A 89 (188)
T ss_dssp CCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSHHHHH---H
T ss_pred CCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccCHHHHH---H
Confidence 345556789999999999999888555 89999999999886543 34432 332 13445666 6
Q ss_pred eeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEE--
Q psy6055 205 FRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR-- 282 (307)
Q Consensus 205 F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~R-- 282 (307)
|++ +++++||++. |.++ .+. +.. .|..-++.||||++|+|+.+
T Consensus 90 ~~~---~~~~~~~~~~--d~~~----~~~----~~~----------------------~v~~~P~~~lid~~G~i~~~g~ 134 (188)
T 2cvb_A 90 FAE---EHGIFFPYLL--DETQ----EVA----KAY----------------------RALRTPEVFLFDERRLLRYHGR 134 (188)
T ss_dssp HHH---HHTCCSCEEE--CSSS----HHH----HHT----------------------TCCEESEEEEECTTCBEEEEEC
T ss_pred HHH---HhCCCceEEE--CCcc----hHH----HHc----------------------CCCCCCeEEEECCCCcEEEEEe
Confidence 884 7899999983 3222 222 221 23444688999999999998
Q ss_pred ------ecCCCCcccHHHHHHHHhhhh
Q psy6055 283 ------YDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 283 ------y~p~~~P~eLe~dIekLL~~~ 303 (307)
+.+..++++|++.|+++|+..
T Consensus 135 ~~~~~~~~g~~~~~~l~~~i~~ll~~~ 161 (188)
T 2cvb_A 135 VNDNPKDPSKVQSHDLEAAIEALLRGE 161 (188)
T ss_dssp SSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred cCCccccccccCHHHHHHHHHHHHcCC
Confidence 223346789999999999754
No 35
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=99.34 E-value=9.6e-14 Score=117.78 Aligned_cols=120 Identities=9% Similarity=-0.071 Sum_probs=79.4
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCC
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~y 212 (307)
++++.+++|++++|++|+||++||+. +||+.|..++|.|+.++ .+.+.|++.. ++.++++ +|++ ++
T Consensus 33 ~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~---~~~~---~~ 106 (179)
T 3ixr_A 33 NHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHD---SFCA---KQ 106 (179)
T ss_dssp HCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHH---HHHH---HH
T ss_pred CeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH---HHHH---Hc
Confidence 45556689999999999999766554 79999999999997654 5666677653 3445566 6884 88
Q ss_pred CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC
Q psy6055 213 VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 213 gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
+++||++. |.++ .+.+ ..+ .+..+ .........++++.||||++|+|+++|.+.
T Consensus 107 ~~~f~~l~--D~~~----~~~~----~~g----v~~~~------~~~g~~~~~~~p~~~lID~~G~I~~~~~~~ 160 (179)
T 3ixr_A 107 GFTFPLVS--DSDA----ILCK----AFD----VIKEK------TMYGRQVIGIERSTFLIGPTHRIVEAWRQV 160 (179)
T ss_dssp TCCSCEEE--CTTC----HHHH----HTT----CEEEE------CCC--CEEEECCEEEEECTTSBEEEEECSC
T ss_pred CCceEEEE--CCch----HHHH----HcC----Ccccc------cccCcccCCcceEEEEECCCCEEEEEEcCC
Confidence 99999994 3333 2222 111 11100 000001123478999999999999999543
No 36
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=99.34 E-value=9.6e-13 Score=104.26 Aligned_cols=126 Identities=6% Similarity=-0.108 Sum_probs=86.4
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC-----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR-----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp-----gs~~EI~~~l~F~~pg~~ 211 (307)
+++.+.+++|+.++|++++||++||.- +||++|..++|.|+.++ .+.+.+++.. .+.++++ +|+. .
T Consensus 12 p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~---~~~~---~ 85 (148)
T 3hcz_A 12 PNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWL---KFIR---S 85 (148)
T ss_dssp CCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHH---HHHH---H
T ss_pred CceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHH---HHHH---H
Confidence 445666789999999999999877544 89999999999886543 4444455442 2345666 6874 7
Q ss_pred CCcc-ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 212 FVPK-FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 212 ygv~-FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
++++ ||++. |.++. ..+.+. | .|...++.||||++|+++.++.+..+.+
T Consensus 86 ~~~~~~~~~~--d~~~~--~~~~~~-----------~---------------~i~~~P~~~lid~~G~i~~~~~g~~~~~ 135 (148)
T 3hcz_A 86 KKIGGWLNVR--DSKNH--TDFKIT-----------Y---------------DIYATPVLYVLDKNKVIIAKRIGYENLD 135 (148)
T ss_dssp HTCTTSEEEE--CTTCC--CCHHHH-----------H---------------CCCSSCEEEEECTTCBEEEESCCGGGHH
T ss_pred cCCCCceEEe--ccccc--hhHHHh-----------c---------------CcCCCCEEEEECCCCcEEEecCCHHHHH
Confidence 8888 89883 43332 122221 1 2445578999999999999998775555
Q ss_pred cHHHHHHHHhh
Q psy6055 291 ELEPDIVEELM 301 (307)
Q Consensus 291 eLe~dIekLL~ 301 (307)
++.+.|+++|+
T Consensus 136 ~~l~~l~~~l~ 146 (148)
T 3hcz_A 136 DFLVQYEKSLK 146 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 55555555553
No 37
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.32 E-value=5.3e-13 Score=110.19 Aligned_cols=117 Identities=9% Similarity=-0.016 Sum_probs=80.4
Q ss_pred CCCCcccCCCCcccCCCCCCCe-EEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPS-HRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGK 210 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKV-vLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~ 210 (307)
+++.+.+++|+.++|++++||+ +||+- +||++|..++|.|+.++ .+.+.|++.. ++.++++ +|++
T Consensus 9 P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~---~~~~--- 82 (161)
T 3drn_A 9 PLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK---RFKE--- 82 (161)
T ss_dssp CCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHH---HHHH---
T ss_pred CCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH---HHHH---
Confidence 4455667899999999999997 55333 79999999999987554 5555566653 3456677 6884
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
+++++||++. |.+ ..+. +..+ ..+ .....++.||||++|+|+.+|.+...+.
T Consensus 83 ~~~~~~~~~~--d~~----~~~~----~~~~----v~~--------------~~~~~P~~~lid~~G~i~~~~~g~~~~~ 134 (161)
T 3drn_A 83 KYKLPFILVS--DPD----KKIR----ELYG----AKG--------------FILPARITFVIDKKGIIRHIYNSQMNPA 134 (161)
T ss_dssp HTTCCSEEEE--CTT----SHHH----HHTT----CCC--------------SSSCCCEEEEECTTSBEEEEEECSSCTT
T ss_pred HhCCCceEEE--CCc----HHHH----HHcC----CCC--------------cCcccceEEEECCCCEEEEEEecCCCCC
Confidence 8999999984 321 1222 2221 111 1112568999999999999999855544
No 38
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=99.32 E-value=5.6e-13 Score=106.99 Aligned_cols=120 Identities=12% Similarity=0.048 Sum_probs=77.8
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccCC-----ChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLRR-----YKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEpg-----s~~EI~~~l~F~~pg~~ 211 (307)
+++.+ .++|+.++|++++||++||.. +||++|.+++|.|+.++ .+.+.+++... +.++++ +|++ +
T Consensus 14 P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~---~~~~---~ 86 (143)
T 4fo5_A 14 PRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFT---ETVK---I 86 (143)
T ss_dssp CCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHH---HHHH---H
T ss_pred CceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHH---HHHH---H
Confidence 34555 689999999999999877444 99999999999987654 56555665532 334566 5774 7
Q ss_pred CCccc-eeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 212 FVPKF-DVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 212 ygv~F-PVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
++++| +++ .|.++... .+. +. | .|.+.++.||||++|+|+.++. .++
T Consensus 87 ~~~~~~~~~--~d~~~~~~-~~~----~~-------~---------------~v~~~P~~~lid~~G~i~~~~~---~~~ 134 (143)
T 4fo5_A 87 DKLDLSTQF--HEGLGKES-ELY----KK-------Y---------------DLRKGFKNFLINDEGVIIAANV---TPE 134 (143)
T ss_dssp HTCCGGGEE--ECTTGGGS-HHH----HH-------T---------------TGGGCCCEEEECTTSBEEEESC---CHH
T ss_pred hCCCCceee--ecccccch-HHH----HH-------c---------------CCCCCCcEEEECCCCEEEEccC---CHH
Confidence 88999 665 23333221 222 11 2 3567789999999999999975 455
Q ss_pred cHHHHHHH
Q psy6055 291 ELEPDIVE 298 (307)
Q Consensus 291 eLe~dIek 298 (307)
+|++.|++
T Consensus 135 ~l~~~l~~ 142 (143)
T 4fo5_A 135 KLTEILKA 142 (143)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 66655543
No 39
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=99.32 E-value=1.1e-12 Score=109.39 Aligned_cols=128 Identities=9% Similarity=-0.061 Sum_probs=83.2
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCCC
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGFV 213 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~yg 213 (307)
+.+...+|+.++|++|+||++||+- +||+.|..++|.|+.++ .+ .+.+.. ++.++++ +|++ +++
T Consensus 30 f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~~~---~~~~---~~~ 101 (171)
T 2yzh_A 30 AVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFAQK---RFCE---SFN 101 (171)
T ss_dssp EEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHH---HHHH---HTT
T ss_pred eEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHHHH---HHHH---HcC
Confidence 4445689999999999999766433 79999999999987655 34 355543 3445566 6884 788
Q ss_pred c-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC-----CC
Q psy6055 214 P-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA-----SV 287 (307)
Q Consensus 214 v-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p-----~~ 287 (307)
+ +||++. |...... ..| + ... ....... .+.++.||||++|+|+.++.+ ..
T Consensus 102 ~~~~~~l~--D~~~~~~-~~~-------g----v~~--------~~~~~~g-~~~p~~~liD~~G~i~~~~~~~~~~~~~ 158 (171)
T 2yzh_A 102 IQNVTVAS--DFRYRDM-EKY-------G----VLI--------GEGALKG-ILARAVFIIDKEGKVAYVQLVPEITEEP 158 (171)
T ss_dssp CCSSEEEE--CTTTCGG-GGG-------T----CBB--------CSSTTTT-SBCCEEEEECTTSBEEEEEECSBTTSCC
T ss_pred CCCeEEee--cCccCcH-HHh-------C----CEe--------cccccCC-ceeeEEEEEcCCCeEEEEEeCCCcCCCC
Confidence 8 899984 3111111 111 1 000 0000001 146799999999999999953 44
Q ss_pred CcccHHHHHHHHh
Q psy6055 288 EPSELEPDIVEEL 300 (307)
Q Consensus 288 ~P~eLe~dIekLL 300 (307)
++++|.++|++||
T Consensus 159 ~~~~ll~~l~~ll 171 (171)
T 2yzh_A 159 NYDEVVNKVKELI 171 (171)
T ss_dssp CCHHHHHHHHHC-
T ss_pred CHHHHHHHHHhhC
Confidence 5567888888765
No 40
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=99.32 E-value=7.8e-13 Score=109.03 Aligned_cols=129 Identities=5% Similarity=-0.109 Sum_probs=84.6
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CC-CCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TD-HIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~-Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~ 211 (307)
+++++.+++|+.++|++++||++||.. +| |++|..++|.|+.++ .+ .+.+.. ++.++++ +|++ .
T Consensus 25 p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d~~~~~~---~~~~---~ 96 (167)
T 2jsy_A 25 PDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISADLPFAQA---RWCG---A 96 (167)
T ss_dssp CCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECSSGGGTS---CCGG---G
T ss_pred CceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECCCHHHHH---HHHH---h
Confidence 334555689999999999999877544 88 999999999887554 34 344442 3445566 6884 8
Q ss_pred CCc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC-----
Q psy6055 212 FVP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA----- 285 (307)
Q Consensus 212 ygv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p----- 285 (307)
+++ +||++... -+ ..+.+ ..+ ..+. . ..+ ..++.||||++|+|+.++.+
T Consensus 97 ~~~~~~~~~~d~-~~----~~~~~----~~~----v~~~----------~-~g~-~~p~~~lid~~G~i~~~~~g~~~~~ 151 (167)
T 2jsy_A 97 NGIDKVETLSDH-RD----MSFGE----AFG----VYIK----------E-LRL-LARSVFVLDENGKVVYAEYVSEATN 151 (167)
T ss_dssp SSCTTEEEEEGG-GT----CHHHH----HTT----CBBT----------T-TCS-BCCEEEEECTTSCEEEEEECSBTTS
T ss_pred cCCCCceEeeCC-ch----hHHHH----HhC----Cccc----------c-CCc-eeeEEEEEcCCCcEEEEEecCCcCC
Confidence 899 89998421 11 12222 111 1100 0 001 14689999999999999953
Q ss_pred CCCcccHHHHHHHHhh
Q psy6055 286 SVEPSELEPDIVEELM 301 (307)
Q Consensus 286 ~~~P~eLe~dIekLL~ 301 (307)
..+.++|.++|++||+
T Consensus 152 ~~~~~~l~~~l~~llk 167 (167)
T 2jsy_A 152 HPNYEKPIEAAKALVK 167 (167)
T ss_dssp CCCSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhhC
Confidence 2234678889988873
No 41
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=99.31 E-value=3.8e-12 Score=110.76 Aligned_cols=129 Identities=6% Similarity=-0.061 Sum_probs=82.6
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~ 211 (307)
+++.+++++|+.++|++|+||++||.. +||+.|..++|.|+.++ .+ .|++.. ++.++++ +|+ ..
T Consensus 59 Pdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~~~~~---~~~---~~ 130 (200)
T 3zrd_A 59 KDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLPFAQS---RFC---GA 130 (200)
T ss_dssp CCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHHT---TCT---TT
T ss_pred CCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCHHHHH---HHH---HH
Confidence 345566789999999999999866444 69999999999987654 45 355543 3455666 698 48
Q ss_pred CCc-cceeecccCC-CCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC--
Q psy6055 212 FVP-KFDVFGPGPV-NGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV-- 287 (307)
Q Consensus 212 ygv-~FPVf~KvdV-NG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~-- 287 (307)
+++ +||++. |. ++ .+. +..+ .... ..+. ..+ +.++.||||++|+|++++....
T Consensus 131 ~~~~~f~~l~--D~~~~----~~~----~~yg----v~~~------~~~~--~g~-~~p~~~lID~~G~I~~~~~~~~~~ 187 (200)
T 3zrd_A 131 EGLSNVITLS--TLRGA----DFK----QAYG----VAIT------EGPL--AGL-TARAVVVLDGQDNVIYSELVNEIT 187 (200)
T ss_dssp TTCTTEEEEE--TTSCT----HHH----HHTT----CEEC------SSTT--TTS-BCCEEEEECTTSBEEEEEECSBTT
T ss_pred cCCCCceEEe--cCchH----HHH----HHhC----ceee------cccC--CCc-cccEEEEECCCCeEEEEEecCCcc
Confidence 999 999984 33 22 111 1111 0000 0000 011 7789999999999999985432
Q ss_pred CcccHHHHHHHH
Q psy6055 288 EPSELEPDIVEE 299 (307)
Q Consensus 288 ~P~eLe~dIekL 299 (307)
+..++++.|+.|
T Consensus 188 ~~~~~~~~l~~L 199 (200)
T 3zrd_A 188 TEPNYDAALAAL 199 (200)
T ss_dssp SCCCHHHHHHHH
T ss_pred cCCCHHHHHHhh
Confidence 223455555443
No 42
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=99.30 E-value=2.4e-12 Score=102.00 Aligned_cols=125 Identities=10% Similarity=-0.018 Sum_probs=89.0
Q ss_pred CCCCcccCCCCcccCC--CCCCCeEEEEc--CCCCCCcCcchhhhhhc-cc-CCCCCccC-----CChhhhccccceeec
Q psy6055 140 SPENSGIGGPDRIDGS--RLRGPSHRSVG--TDHIVVPSRLPSANVVD-PI-SGRGYKLR-----RYKGKVLLIVHFRVS 208 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS--~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-Pc-nQFG~QEp-----gs~~EI~~~l~F~~p 208 (307)
+++.+.+++|+.++|+ +++||++||.- +||++|..++|.|+.++ .+ .+.+++.. .+.++++ +|+.
T Consensus 12 p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~---~~~~- 87 (148)
T 3fkf_A 12 PYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWE---TAIK- 87 (148)
T ss_dssp CCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHH---HHHH-
T ss_pred CCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHH---HHHH-
Confidence 4456667899999999 99999877544 89999999999886554 55 55555543 2345666 5774
Q ss_pred CCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCC
Q psy6055 209 GKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVE 288 (307)
Q Consensus 209 g~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~ 288 (307)
.++++||++. +..+. .+. +.+.. .|..-++.||||++|+++.++. +
T Consensus 88 --~~~~~~~~~~--d~~~~-~~~----~~~~~----------------------~v~~~P~~~lid~~G~i~~~~~---~ 133 (148)
T 3fkf_A 88 --KDTLSWDQVC--DFTGL-SSE----TAKQY----------------------AILTLPTNILLSPTGKILARDI---Q 133 (148)
T ss_dssp --HTTCCSEEEC--CSCGG-GCH----HHHHT----------------------TCCSSSEEEEECTTSBEEEESC---C
T ss_pred --HcCCCceEEE--ccCCc-chH----HHHhc----------------------CCCCcCEEEEECCCCeEEEecC---C
Confidence 8899999983 32221 112 22222 2445578999999999999987 7
Q ss_pred cccHHHHHHHHhhh
Q psy6055 289 PSELEPDIVEELMK 302 (307)
Q Consensus 289 P~eLe~dIekLL~~ 302 (307)
.++|++.|+++|++
T Consensus 134 ~~~l~~~l~~ll~~ 147 (148)
T 3fkf_A 134 GEALTGKLKELLKT 147 (148)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcc
Confidence 88899999999864
No 43
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=99.30 E-value=1.5e-12 Score=105.60 Aligned_cols=125 Identities=10% Similarity=-0.053 Sum_probs=88.7
Q ss_pred CcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC----------CChhhhccccceeecC
Q psy6055 143 NSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR----------RYKGKVLLIVHFRVSG 209 (307)
Q Consensus 143 ~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp----------gs~~EI~~~l~F~~pg 209 (307)
.+.+++|+.+++++++||++||.- +||++|.+++|.|+.++ .+...+++.. .+.++++ +|.
T Consensus 22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~---~~~--- 95 (164)
T 2h30_A 22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQ---KWY--- 95 (164)
T ss_dssp TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHH---HHH---
T ss_pred ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHH---HHH---
Confidence 566789999999999999877544 89999999999887554 3444444431 2234455 566
Q ss_pred CCCCcc-ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCC
Q psy6055 210 KGFVPK-FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVE 288 (307)
Q Consensus 210 ~~ygv~-FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~ 288 (307)
..++++ |++.. |- ...+. ... .|..-++.||||++|+++.++.+..+
T Consensus 96 ~~~~~~~~~~~~--d~----~~~~~----~~~----------------------~v~~~P~~~lid~~G~i~~~~~g~~~ 143 (164)
T 2h30_A 96 AGLNYPKLPVVT--DN----GGTIA----QNL----------------------NISVYPSWALIGKDGDVQRIVKGSIN 143 (164)
T ss_dssp TTSCCTTSCEEE--CT----TCHHH----HHT----------------------TCCSSSEEEEECTTSCEEEEEESCCC
T ss_pred HhCCCCcceEEE--cC----chHHH----HHc----------------------CCCccceEEEECCCCcEEEEEcCCCC
Confidence 356666 67652 21 12222 221 24455799999999999999999999
Q ss_pred cccHHHHHHHHhhhhhh
Q psy6055 289 PSELEPDIVEELMKREE 305 (307)
Q Consensus 289 P~eLe~dIekLL~~~~~ 305 (307)
.++|++.|+++|++.++
T Consensus 144 ~~~l~~~i~~~~~~~~~ 160 (164)
T 2h30_A 144 EAQALALIRNPNADLGS 160 (164)
T ss_dssp HHHHHHHHHCTTCCCGG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999876544
No 44
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=99.30 E-value=4.7e-12 Score=106.53 Aligned_cols=133 Identities=10% Similarity=-0.056 Sum_probs=84.0
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CC-CCCCcCcchhhhhhcccCCCCCccC----CChhhhccccceeecCCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TD-HIVVPSRLPSANVVDPISGRGYKLR----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~-Cg~c~qe~p~L~llfPcnQFG~QEp----gs~~EI~~~l~F~~pg~~y 212 (307)
+++.+.+++|+.++|++|+||++||.. +| |++|..++|.|+.++.- .+++.. ++.++++ +|++ .+
T Consensus 25 P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~---~~~~---~~ 96 (175)
T 1xvq_A 25 PAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQK---RFCG---AE 96 (175)
T ss_dssp CCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHT---TCC------
T ss_pred CCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHH---HHHH---Hc
Confidence 345556689999999999999877444 78 99999999998766532 344442 3455566 6884 88
Q ss_pred Cc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC-C-CCc
Q psy6055 213 VP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA-S-VEP 289 (307)
Q Consensus 213 gv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p-~-~~P 289 (307)
++ +||++. |.+ ..+.+. .+ .... . .+. .-.+.++.||||++|+|++++.+ . .+.
T Consensus 97 ~~~~~~~l~--D~~----~~~~~~----~g----v~~~-----~-~~~---~g~~~p~~~lid~~G~I~~~~~g~~~~~~ 153 (175)
T 1xvq_A 97 GTENVMPAS--AFR----DSFGED----YG----VTIA-----D-GPM---AGLLARAIVVIGADGNVAYTELVPEIAQE 153 (175)
T ss_dssp ---CEEEEE--CTT----SSHHHH----TT----CBBC-----S-STT---TTSBCSEEEEECTTSBEEEEEECSBTTCC
T ss_pred CCCCceEee--CCH----HHHHHH----hC----Cccc-----c-ccc---CCcccceEEEECCCCeEEEEEECCCcCCC
Confidence 98 899984 322 122222 11 1100 0 000 11356899999999999999963 3 344
Q ss_pred ccHHHHHHHHhhhh
Q psy6055 290 SELEPDIVEELMKR 303 (307)
Q Consensus 290 ~eLe~dIekLL~~~ 303 (307)
.++++.|+++.+++
T Consensus 154 ~~~~~~l~~l~~~~ 167 (175)
T 1xvq_A 154 PNYEAALAALGATS 167 (175)
T ss_dssp CCHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhhc
Confidence 57888888887654
No 45
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=99.30 E-value=1.6e-12 Score=112.06 Aligned_cols=145 Identities=13% Similarity=0.047 Sum_probs=90.8
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCC-CcCcchhhhhhc-ccCC---CCCccC--------CChhhhccccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIV-VPSRLPSANVVD-PISG---RGYKLR--------RYKGKVLLIVH 204 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~-c~qe~p~L~llf-PcnQ---FG~QEp--------gs~~EI~~~l~ 204 (307)
.++++.+.+|+.++|++++||++||.. +||++ |..++|.|+.++ .+.+ -+++.. ++.+.++ +
T Consensus 22 p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~---~ 98 (200)
T 2b7k_A 22 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLK---E 98 (200)
T ss_dssp CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHH---H
T ss_pred CCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHH---H
Confidence 345555689999999999999877544 99998 999999887543 2321 134432 1345566 6
Q ss_pred eeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 205 FRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 205 F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
|+ .+++++|+++. +.. ...-+ +.+..+- .++.+ -...+.....+.++++.||||++|+|+.+|.
T Consensus 99 ~~---~~~~~~~~~l~-----~~~-d~~~~-~~~~~gv---~~~~p---~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~ 162 (200)
T 2b7k_A 99 YL---SDFHPSILGLT-----GTF-DEVKN-ACKKYRV---YFSTP---PNVKPGQDYLVDHSIFFYLMDPEGQFVDALG 162 (200)
T ss_dssp HH---TTSCTTCEEEE-----CCH-HHHHH-HHHHTTC--------------------CTTTCCCEEEECTTSCEEEEEC
T ss_pred HH---HHcCCCceEEe-----CCH-HHHHH-HHHHcCc---EEeec---cccCCCCCceeeecceEEEECCCCcEEEEeC
Confidence 88 48888888763 110 11111 1122210 00000 0000011123567789999999999999999
Q ss_pred CCCCcccHHHHHHHHhhhh
Q psy6055 285 ASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 285 p~~~P~eLe~dIekLL~~~ 303 (307)
+..+++++.++|+++|+..
T Consensus 163 g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 163 RNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp TTCCTTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9889999999999988753
No 46
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=99.29 E-value=7.7e-13 Score=104.52 Aligned_cols=120 Identities=9% Similarity=-0.014 Sum_probs=88.1
Q ss_pred ccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC----------CChhhhccccceeecCCC
Q psy6055 145 GIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR----------RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 145 t~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp----------gs~~EI~~~l~F~~pg~~ 211 (307)
..++|+.+++++++||++||.- +||++|.+++|.|+.+. .+.+. .+.. .+.++++ +|+. +
T Consensus 15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~~---~~~~---~ 87 (148)
T 2b5x_A 15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDLDPGKIK---ETAA---E 87 (148)
T ss_dssp EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTSSHHHHH---HHHH---H
T ss_pred ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccccCHHHHH---HHHH---H
Confidence 3579999999999999887555 89999999988876543 23332 2221 1456677 6884 7
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCccc
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSE 291 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~e 291 (307)
++++||++. +-+ ..+. +.. .|...++.||||++|+++.++.+..++++
T Consensus 88 ~~~~~~~~~--d~~----~~~~----~~~----------------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~ 135 (148)
T 2b5x_A 88 HDITQPIFV--DSD----HALT----DAF----------------------ENEYVPAYYVFDKTGQLRHFQAGGSGMKM 135 (148)
T ss_dssp TTCCSCEEE--CSS----CHHH----HHT----------------------CCCCSSEEEEECTTCBEEEEEESCSTTHH
T ss_pred cCCCcceEE--CCc----hhHH----HHh----------------------CCCCCCEEEEECCCCcEEEEecCCCCHHH
Confidence 899999873 221 1222 211 24566799999999999999999889999
Q ss_pred HHHHHHHHhhhh
Q psy6055 292 LEPDIVEELMKR 303 (307)
Q Consensus 292 Le~dIekLL~~~ 303 (307)
|++.|+++|++.
T Consensus 136 l~~~l~~~l~~~ 147 (148)
T 2b5x_A 136 LEKRVNRVLAET 147 (148)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcc
Confidence 999999999864
No 47
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=99.29 E-value=1.1e-12 Score=110.39 Aligned_cols=142 Identities=9% Similarity=-0.052 Sum_probs=91.2
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCC-CCcCcchhhhhhc-ccCC--CCCccC-------CChhhhccccceee
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHI-VVPSRLPSANVVD-PISG--RGYKLR-------RYKGKVLLIVHFRV 207 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg-~c~qe~p~L~llf-PcnQ--FG~QEp-------gs~~EI~~~l~F~~ 207 (307)
++++++++|+.++|++|+||++||.. +||+ .|..+++.|+.++ .+.+ .+++.. ++.++++ +|++
T Consensus 10 ~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~---~~~~ 86 (170)
T 3me7_A 10 DITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIK---RFQK 86 (170)
T ss_dssp TCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHH---HHHH
T ss_pred CeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHH---HHHH
Confidence 35556689999999999999877544 9997 5999999887554 3433 234432 2345566 6884
Q ss_pred cCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC-C
Q psy6055 208 SGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA-S 286 (307)
Q Consensus 208 pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p-~ 286 (307)
+++++||...-+ +.|+ ...+.+..+. .+. . +.+ ....+.+..+.||||++|+|+.+|.+ .
T Consensus 87 ---~~~~~~~~w~~l-~~~~-~~~~~~~~~~-~g~-----~-------~~~-~~~~~~~~~~~~lID~~G~i~~~~~g~~ 147 (170)
T 3me7_A 87 ---EYGIDGKGWKVV-KAKT-SEDLFKLLDA-IDF-----R-------FMT-AGNDFIHPNVVVVLSPELQIKDYIYGVN 147 (170)
T ss_dssp ---HTTCCSSSEEEE-EESS-HHHHHHHHHH-TTC-----C-------CEE-ETTEEECCCEEEEECTTSBEEEEEESSS
T ss_pred ---HcCCCCCCeEEE-eCCC-HHHHHHHHHH-CCe-----E-------Eec-CCCccccCceEEEECCCCeEEEEEeCCC
Confidence 888887642100 0111 1122333322 110 0 000 12357788899999999999998766 4
Q ss_pred CCcccHHHHHHHHhhhhh
Q psy6055 287 VEPSELEPDIVEELMKRE 304 (307)
Q Consensus 287 ~~P~eLe~dIekLL~~~~ 304 (307)
.++++|.++|++++.+.+
T Consensus 148 ~~~~~i~~~l~~~~~~~~ 165 (170)
T 3me7_A 148 YNYLEFVNALRLARGEGH 165 (170)
T ss_dssp CCHHHHHHHHHHHTTCSC
T ss_pred CCHHHHHHHHHHhhcccc
Confidence 678899999999987654
No 48
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=99.28 E-value=1.9e-12 Score=107.26 Aligned_cols=126 Identities=5% Similarity=-0.182 Sum_probs=81.8
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~ 211 (307)
+++.+...+|+.++|++|+||++||.. +||+.|..++|.|+.++ .+ .+.+.. .+.++++ +|++ .
T Consensus 23 P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~~---~~~~---~ 94 (163)
T 1psq_A 23 LDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQK---RWCG---A 94 (163)
T ss_dssp CCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHH---HHHH---H
T ss_pred CCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHHH---HHHH---h
Confidence 334555689999999999999876433 69999999999987665 34 355543 3445566 6884 7
Q ss_pred CCc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC---C
Q psy6055 212 FVP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS---V 287 (307)
Q Consensus 212 ygv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~---~ 287 (307)
+++ +||++... .+ ..+.+.+.-... . .. .++++.||||++|+|++++.+. .
T Consensus 95 ~~~~~~~~l~D~-~~----~~~~~~~gv~~~------------------~-~g-~~~p~~~liD~~G~i~~~~~g~~~~~ 149 (163)
T 1psq_A 95 EGLDNAIMLSDY-FD----HSFGRDYALLIN------------------E-WH-LLARAVFVLDTDNTIRYVEYVDNINS 149 (163)
T ss_dssp HTCTTSEEEECT-TT----CHHHHHHTCBCT------------------T-TC-SBCCEEEEECTTCBEEEEEECSBTTS
T ss_pred cCCCCcEEecCC-ch----hHHHHHhCCccc------------------c-CC-ceEEEEEEEcCCCeEEEEEecCCcCC
Confidence 889 99998421 12 223322211100 0 01 1357999999999999999642 3
Q ss_pred Cc--ccHHHHHHH
Q psy6055 288 EP--SELEPDIVE 298 (307)
Q Consensus 288 ~P--~eLe~dIek 298 (307)
.+ ++|.++|++
T Consensus 150 ~~~~~~~l~~l~~ 162 (163)
T 1psq_A 150 EPNFEAAIAAAKA 162 (163)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 33 456666654
No 49
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=99.27 E-value=5.1e-12 Score=105.15 Aligned_cols=115 Identities=6% Similarity=-0.096 Sum_probs=76.0
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc----CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG----TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGK 210 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN----S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~ 210 (307)
+++++...+|+.++|++|+||++| || +||++|..++|.|+.++ .+ .+++.. ++.++++ +|+ .
T Consensus 24 P~f~l~~~~G~~v~l~~~~gk~vv-l~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~~~~---~~~---~ 94 (165)
T 1q98_A 24 ENFILVGNDLADVALNDFASKRKV-LNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPFAQA---RFC---G 94 (165)
T ss_dssp CCCEEECTTSCEEEGGGGTTSEEE-EEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHHHHT---TCT---T
T ss_pred CCeEEECCCCCEEehHHhCCCeEE-EEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHHHHH---HHH---H
Confidence 345556789999999999999866 55 79999999999987654 34 355543 3455566 688 4
Q ss_pred CCCc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 211 GFVP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 211 ~ygv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
++++ +||++. |.+ ...+.+ ..+ .... -.+.. . .|.++.||||++|+|+.++.+
T Consensus 95 ~~~~~~~~~l~--D~~---~~~~~~----~~g----v~~~------~~~~~--g-~~~p~~~liD~~G~i~~~~~~ 148 (165)
T 1q98_A 95 AEGIENAKTVS--TFR---NHALHS----QLG----VDIQ------TGPLA--G-LTSRAVIVLDEQNNVLHSQLV 148 (165)
T ss_dssp TTTCTTEEEEE--CTT---CTHHHH----HTT----CEEC------SSTTT--T-SBCCEEEEECTTSBEEEEEEC
T ss_pred HcCCCceEEee--ccc---cchHHH----HhC----ceec------ccccC--C-ccceeEEEEcCCCEEEEEEeC
Confidence 8999 799984 321 122222 111 0000 00000 1 267899999999999999964
No 50
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=99.27 E-value=5.1e-12 Score=106.66 Aligned_cols=132 Identities=11% Similarity=0.042 Sum_probs=88.6
Q ss_pred CCCCcccCCCC----cccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceee
Q psy6055 140 SPENSGIGGPD----RIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRV 207 (307)
Q Consensus 140 ~~~~ft~ldG~----~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~ 207 (307)
+++++..++|+ .++|++|+||++||.. +||++|..++|.|+.++ .+.+.+.+.. ++.++++ +|++
T Consensus 8 P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~---~~~~ 84 (187)
T 1we0_A 8 QPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHK---AWHE 84 (187)
T ss_dssp CCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH---HHHH
T ss_pred CCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH---HHHH
Confidence 34555567899 9999999999877554 89999999999887554 4444455543 2344555 5874
Q ss_pred cCCCC----CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 208 SGKGF----VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 208 pg~~y----gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
.+ +++||++. |.+ ..+.+.+.-.... .. .-.++.||||++|+|+.++
T Consensus 85 ---~~~~~~~~~~~~~~--d~~----~~~~~~~~v~~~~-------------------~g-~~~P~~~lid~~G~i~~~~ 135 (187)
T 1we0_A 85 ---NSPAVGSIEYIMIG--DPS----QTISRQFDVLNEE-------------------TG-LADRGTFIIDPDGVIQAIE 135 (187)
T ss_dssp ---SCHHHHTCCSEEEE--CTT----CHHHHHTTCEETT-------------------TT-EECEEEEEECTTSBEEEEE
T ss_pred ---HhccccCCCceEEE--CCc----hHHHHHhCCCcCC-------------------CC-ceeeEEEEECCCCeEEEEE
Confidence 66 78999984 322 2232221110000 00 0235899999999999999
Q ss_pred cCCC----CcccHHHHHHHHhhhh
Q psy6055 284 DASV----EPSELEPDIVEELMKR 303 (307)
Q Consensus 284 ~p~~----~P~eLe~dIekLL~~~ 303 (307)
.+.. +.++|.+.|++++...
T Consensus 136 ~g~~~~~~~~~~l~~~l~~l~~~~ 159 (187)
T 1we0_A 136 INADGIGRDASTLINKVKAAQYVR 159 (187)
T ss_dssp EECTTSCCCTTHHHHHHHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHhhhh
Confidence 7754 6778999999988643
No 51
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=99.27 E-value=1e-12 Score=116.69 Aligned_cols=131 Identities=10% Similarity=-0.026 Sum_probs=87.2
Q ss_pred CCCCcccC--CC--CcccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhcccccee
Q psy6055 140 SPENSGIG--GP--DRIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFR 206 (307)
Q Consensus 140 ~~~~ft~l--dG--~~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~ 206 (307)
+++++..+ +| +.++|++| +||++||.. +||++|..++|.|+.++ .+.+.|++.. ++.++++ +|+
T Consensus 32 P~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~---~~~ 108 (221)
T 2c0d_A 32 YNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHL---AWK 108 (221)
T ss_dssp CCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH---HHH
T ss_pred CCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH---HHH
Confidence 34555566 89 99999999 999877443 89999999999987654 4555566654 2344566 577
Q ss_pred ecCCCC-------CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcE
Q psy6055 207 VSGKGF-------VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYP 279 (307)
Q Consensus 207 ~pg~~y-------gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~V 279 (307)
+ .+ +++||++. |.++ .+. +. ||. . .. .-...++.||||++|+|
T Consensus 109 ~---~~~~~~g~~~~~fp~l~--D~~~----~~~----~~-------ygv-------~-~~--~g~~~P~~~lID~~G~I 158 (221)
T 2c0d_A 109 N---MPIEKGGIGNVEFTLVS--DINK----DIS----KN-------YNV-------L-YD--NSFALRGLFIIDKNGCV 158 (221)
T ss_dssp H---SCGGGTCCCSCSSEEEE--CTTS----HHH----HH-------TTC-------E-ET--TTEECEEEEEECTTSBE
T ss_pred H---HhhhhcCccCCceEEEE--CCch----HHH----HH-------cCC-------c-cc--CCCccceEEEECCCCeE
Confidence 4 55 78899984 3222 121 11 110 0 00 00245799999999999
Q ss_pred EEEecCC----CCcccHHHHHHHHhhhh
Q psy6055 280 VARYDAS----VEPSELEPDIVEELMKR 303 (307)
Q Consensus 280 V~Ry~p~----~~P~eLe~dIekLL~~~ 303 (307)
++++.+. .+.++|.+.|++|+...
T Consensus 159 ~~~~~g~~~~~~~~~ell~~l~~L~~~~ 186 (221)
T 2c0d_A 159 RHQTVNDLPIGRNVQEVLRTIDSIIHVD 186 (221)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhhh
Confidence 9998553 34567889999887543
No 52
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=99.26 E-value=1.4e-12 Score=104.78 Aligned_cols=128 Identities=15% Similarity=0.083 Sum_probs=86.9
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC-----CC-hhhhccccceeecCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR-----RY-KGKVLLIVHFRVSGK 210 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp-----gs-~~EI~~~l~F~~pg~ 210 (307)
+++.+.+++|+.++|++++||++||.- +||+.|..++|.|+.+. .+.+.+++.. .+ .++++ +|+.
T Consensus 9 p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~---~~~~--- 82 (154)
T 3kcm_A 9 PDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVE---EFFR--- 82 (154)
T ss_dssp CCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHH---HHHH---
T ss_pred CCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHH---HHHH---
Confidence 345566789999999999999877555 89999999998886543 4544444432 12 45566 6874
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC--C
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV--E 288 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~--~ 288 (307)
.++++||++. |-+ ..+.+.+ .|..-++.||||++|+++.++.+.. +
T Consensus 83 ~~~~~~~~~~--d~~----~~~~~~~--------------------------~v~~~P~~~lid~~G~i~~~~~g~~~~~ 130 (154)
T 3kcm_A 83 KTGFTLPVLL--DAD----KRVGKLY--------------------------GTTGVPETFVIDRHGVILKKVVGAMEWD 130 (154)
T ss_dssp HHCCCCCEEE--CTT----CHHHHHH--------------------------TCCSBCEEEEECTTSBEEEEEESCCCTT
T ss_pred HcCCCeeEEe--cCc----hHHHHHh--------------------------CCCCCCeEEEECCCCcEEEEEcCCCccc
Confidence 7899999983 322 2222211 1334468999999999999999886 4
Q ss_pred cccHHHHHHHHhhhhhh
Q psy6055 289 PSELEPDIVEELMKREE 305 (307)
Q Consensus 289 P~eLe~dIekLL~~~~~ 305 (307)
.+++++.|++|+.+.+.
T Consensus 131 ~~~l~~~l~~l~~~~~~ 147 (154)
T 3kcm_A 131 HPEVIAFLNNELSKARE 147 (154)
T ss_dssp SHHHHHHHHTC------
T ss_pred cHHHHHHHHHHHHHhhh
Confidence 55899999888765543
No 53
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=99.26 E-value=4.2e-12 Score=97.96 Aligned_cols=122 Identities=15% Similarity=0.082 Sum_probs=85.2
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhcccCCCCCc----------cCCChhhhccccceee
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVDPISGRGYK----------LRRYKGKVLLIVHFRV 207 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llfPcnQFG~Q----------Epgs~~EI~~~l~F~~ 207 (307)
+++.+..++|+.++|++++||++||.- +||+.|..+++.|+.+..-.+.+.+ ...+.++++ +|+
T Consensus 3 p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~---~~~- 78 (138)
T 4evm_A 3 ADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFK---NWY- 78 (138)
T ss_dssp CCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHH---HHH-
T ss_pred CcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHH---HHH-
Confidence 345566789999999999999877444 8999999999888654321111222 123345566 687
Q ss_pred cCCCCCc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC
Q psy6055 208 SGKGFVP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 208 pg~~ygv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
..++. +||++. +-++ . +.+.. .|...++.||||++|+++.++.+.
T Consensus 79 --~~~~~~~~~~~~--d~~~----~----~~~~~----------------------~v~~~P~~~lid~~G~i~~~~~g~ 124 (138)
T 4evm_A 79 --KGLDYKNLPVLV--DPSG----K----LLETY----------------------GVRSYPTQAFIDKEGKLVKTHPGF 124 (138)
T ss_dssp --TTCCCTTCCEEE--CTTC----H----HHHHT----------------------TCCSSSEEEEECTTCCEEEEEESC
T ss_pred --hhcCCCCeeEEE--Ccch----H----HHHHc----------------------CcccCCeEEEECCCCcEEEeecCC
Confidence 47787 899883 2221 1 22222 244557999999999999999999
Q ss_pred CCcccHHHHHHHH
Q psy6055 287 VEPSELEPDIVEE 299 (307)
Q Consensus 287 ~~P~eLe~dIekL 299 (307)
.++++|++.|+++
T Consensus 125 ~~~~~l~~~l~~l 137 (138)
T 4evm_A 125 MEKDAILQTLKEL 137 (138)
T ss_dssp CCHHHHHHHHHHC
T ss_pred CcHHHHHHHHHhh
Confidence 9988888888764
No 54
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=99.26 E-value=3.7e-13 Score=115.07 Aligned_cols=130 Identities=15% Similarity=0.069 Sum_probs=86.9
Q ss_pred CCCCcccC-CC--CcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeec
Q psy6055 140 SPENSGIG-GP--DRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVS 208 (307)
Q Consensus 140 ~~~~ft~l-dG--~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~p 208 (307)
+++++..+ || +.++|++|+||++||+- +||++|..++|.|+.++ .+.+.|++.. .+.++++ +|++
T Consensus 8 P~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~---~~~~- 83 (186)
T 1n8j_A 8 KPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHK---AWHS- 83 (186)
T ss_dssp CCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH---HHHH-
T ss_pred CCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH---HHHH-
Confidence 34455557 59 89999999999766432 69999999999997654 4555566654 2344566 6884
Q ss_pred CCCC----CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 209 GKGF----VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 209 g~~y----gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
++ +++||++. |.++. +.+ ..+ .... .. . ...++.||||++|+|++++.
T Consensus 84 --~~~~~~~~~fp~l~--D~~~~----~~~----~yg----v~~~----------~~-g-~~~p~~~lID~~G~i~~~~~ 135 (186)
T 1n8j_A 84 --SSETIAKIKYAMIG--DPTGA----LTR----NFD----NMRE----------DE-G-LADRATFVVDPQGIIQAIEV 135 (186)
T ss_dssp --HCTTGGGCCSEEEE--CTTSH----HHH----HTT----CEET----------TT-T-EECEEEEEECTTSBEEEEEE
T ss_pred --HcCcccCCceeEEE--CCchH----HHH----HhC----CccC----------CC-C-ceeeEEEEECCCCeEEEEEe
Confidence 67 88999984 32221 221 111 1000 00 0 13579999999999999997
Q ss_pred CCC----CcccHHHHHHHHhh
Q psy6055 285 ASV----EPSELEPDIVEELM 301 (307)
Q Consensus 285 p~~----~P~eLe~dIekLL~ 301 (307)
+.. +.++|.+.|++|+.
T Consensus 136 ~~~~~~~~~~~l~~~l~~l~~ 156 (186)
T 1n8j_A 136 TAEGIGRDASDLLRKIKAAQY 156 (186)
T ss_dssp ECTTBCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 644 45678888988875
No 55
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=99.25 E-value=3.4e-12 Score=104.62 Aligned_cols=123 Identities=12% Similarity=0.013 Sum_probs=81.4
Q ss_pred CCCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccCC-----ChhhhccccceeecCC
Q psy6055 139 ASPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLRR-----YKGKVLLIVHFRVSGK 210 (307)
Q Consensus 139 ~~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEpg-----s~~EI~~~l~F~~pg~ 210 (307)
.+++++.+++|+.++|++++||++||.. +||++|.+++|.|+.++ .+.+.|++... ..+.++ +|..
T Consensus 15 ~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~---~~~~--- 88 (152)
T 2lrt_A 15 IIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWK---TSAD--- 88 (152)
T ss_dssp SCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHH---HHHT---
T ss_pred CCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHH---HHHh---
Confidence 3445556789999999999999877555 99999999999887554 45555555431 223344 4652
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
+ ++||++ .|.+|... .+.+.+ .|.--++.||||++|+|+.++.+. .
T Consensus 89 ~--~~~~~~--~d~~~~~~-~~~~~~--------------------------~v~~~P~~~lid~~G~i~~~~~g~---~ 134 (152)
T 2lrt_A 89 N--LPWVCV--RDANGAYS-SYISLY--------------------------NVTNLPSVFLVNRNNELSARGENI---K 134 (152)
T ss_dssp T--CSSEEE--ECSSGGGC-HHHHHH--------------------------TCCSCSEEEEEETTTEEEEETTTC---S
T ss_pred C--CCceEE--ECCCCcch-HHHHHc--------------------------CcccCceEEEECCCCeEEEecCCH---H
Confidence 3 568877 45555432 122211 122235899999999999999875 4
Q ss_pred cHHHHHHHHhh
Q psy6055 291 ELEPDIVEELM 301 (307)
Q Consensus 291 eLe~dIekLL~ 301 (307)
++++.+.++|.
T Consensus 135 ~~e~~~~~~~~ 145 (152)
T 2lrt_A 135 DLDEAIKKLLE 145 (152)
T ss_dssp CHHHHHHHHHG
T ss_pred HHHHHHHHHHh
Confidence 45566666654
No 56
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=99.25 E-value=1.3e-12 Score=124.90 Aligned_cols=123 Identities=15% Similarity=0.045 Sum_probs=92.2
Q ss_pred cccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC----------CChhhhccccceeecCC
Q psy6055 144 SGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR----------RYKGKVLLIVHFRVSGK 210 (307)
Q Consensus 144 ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp----------gs~~EI~~~l~F~~pg~ 210 (307)
+.++||+.++|++++||++||.. +||++|.+++|.|+.++ .+.+.+++.. .+.++++ +|++
T Consensus 67 L~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~---~~~~--- 140 (352)
T 2hyx_A 67 LNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVA---KGAA--- 140 (352)
T ss_dssp ESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHH---HHHH---
T ss_pred cCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHH---HHHH---
Confidence 45689999999999999877554 99999999999886543 4444444432 2345566 6884
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
+++++||+.. |.+ ..+++ . | .|.+.++.||||++|+|+.++.+..+++
T Consensus 141 ~~~l~fpv~~--D~~----~~l~~----~-------y---------------gV~~~Pt~~lID~~G~Iv~~~~G~~~~~ 188 (352)
T 2hyx_A 141 NLGISYPIAL--DNN----YATWT----N-------Y---------------RNRYWPAEYLIDATGTVRHIKFGEGDYN 188 (352)
T ss_dssp HHTCCSCEEE--CTT----SHHHH----H-------T---------------TCCEESEEEEECTTSBEEEEEESBCCHH
T ss_pred HcCCCccEEe--CCc----HHHHH----H-------c---------------CCCccCEEEEEeCCCeEEEEEcCCCCHH
Confidence 8899999883 322 12221 1 1 3566689999999999999999999999
Q ss_pred cHHHHHHHHhhhhh
Q psy6055 291 ELEPDIVEELMKRE 304 (307)
Q Consensus 291 eLe~dIekLL~~~~ 304 (307)
+|++.|+++|++..
T Consensus 189 ~l~~~I~~lL~e~~ 202 (352)
T 2hyx_A 189 VTETLVRQLLNDAK 202 (352)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999997653
No 57
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=99.25 E-value=8.6e-12 Score=99.98 Aligned_cols=127 Identities=10% Similarity=-0.051 Sum_probs=88.0
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC-----CChhhhccccceeecCCCC
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR-----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp-----gs~~EI~~~l~F~~pg~~y 212 (307)
++++.+++|+.++|++++||++||+- +||++|.+++|.|+.++ .+.+.+++.. .+.++++ +|+. ++
T Consensus 12 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~---~~~~---~~ 85 (152)
T 2lja_A 12 SFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWE---NMVT---KD 85 (152)
T ss_dssp SCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHH---HHHH---HH
T ss_pred ccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHH---HHHH---hc
Confidence 34555689999999999999877555 89999999999886543 4544444432 2234566 5764 66
Q ss_pred CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcccH
Q psy6055 213 VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSEL 292 (307)
Q Consensus 213 gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eL 292 (307)
+++|+.+- .| ....+. +.. .|..-++.||||++|+++.++.+..+.++|
T Consensus 86 ~~~~~~~~-~d----~~~~~~----~~~----------------------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l 134 (152)
T 2lja_A 86 QLKGIQLH-MG----TDRTFM----DAY----------------------LINGIPRFILLDRDGKIISANMTRPSDPKT 134 (152)
T ss_dssp TCCSEEEE-CS----SCTHHH----HHT----------------------TCCSSCCEEEECTTSCEEESSCCCTTCHHH
T ss_pred CCCCceee-cC----cchhHH----HHc----------------------CcCCCCEEEEECCCCeEEEccCCCCCHHHH
Confidence 77764431 11 112222 221 233446889999999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy6055 293 EPDIVEELMKRE 304 (307)
Q Consensus 293 e~dIekLL~~~~ 304 (307)
++.|++++....
T Consensus 135 ~~~l~~~~~~~~ 146 (152)
T 2lja_A 135 AEKFNELLGLEG 146 (152)
T ss_dssp HHHHHHHHTCCS
T ss_pred HHHHHHHhcccc
Confidence 999999987543
No 58
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=99.24 E-value=6e-13 Score=108.81 Aligned_cols=139 Identities=13% Similarity=0.054 Sum_probs=89.2
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCC-CcCcchhhhhhc-ccCCC---CCccC--------CChhhhccccc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIV-VPSRLPSANVVD-PISGR---GYKLR--------RYKGKVLLIVH 204 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~-c~qe~p~L~llf-PcnQF---G~QEp--------gs~~EI~~~l~ 204 (307)
.++++.+++| .++|++++||++||.. +||++ |..++|.|+.++ .+.+. +++.. ++.++++ +
T Consensus 17 p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~---~ 92 (172)
T 2k6v_A 17 VDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVAD---R 92 (172)
T ss_dssp CCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHH---H
T ss_pred CCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHH---H
Confidence 3455567899 9999999999877544 99998 999999887654 45433 23331 2345666 6
Q ss_pred eeecCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 205 FRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 205 F~~pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
|++ +++++||++. ++. ..+.+..+. .+ .+... ........-.|.+.++.|||| +|+|+.++.
T Consensus 93 ~~~---~~~~~~~~l~-----d~~-~~~~~~~~~-~g----v~~~~---~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~ 154 (172)
T 2k6v_A 93 YAK---AFHPSFLGLS-----GSP-EAVREAAQT-FG----VFYQK---SQYRGPGEYLVDHTATTFVVK-EGRLVLLYS 154 (172)
T ss_dssp HHH---HHCTTEEEEC-----CCH-HHHHHHHHH-HT----CCEEE---EEEEETTEEEEEECCCEEEEE-TTEEEEEEC
T ss_pred HHH---HhCCCcEEEe-----CCH-HHHHHHHHh-cC----eEEEe---ccCCCCCCceEecCCEEEEEE-CCEEEEEEC
Confidence 884 7899999983 111 111222221 11 00000 000000001366788999999 999999999
Q ss_pred CCC--CcccHHHHHHHHh
Q psy6055 285 ASV--EPSELEPDIVEEL 300 (307)
Q Consensus 285 p~~--~P~eLe~dIekLL 300 (307)
+.. ++++|++.|++||
T Consensus 155 g~~~~~~~~l~~~l~~ll 172 (172)
T 2k6v_A 155 PDKAEATDRVVADLQALL 172 (172)
T ss_dssp HHHHTCHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 887 8889999998875
No 59
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=99.24 E-value=8e-13 Score=111.33 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=89.2
Q ss_pred CCCCcccCCC--CcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhcccCCCCCccC-----CChhhhccccceeecCC
Q psy6055 140 SPENSGIGGP--DRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVDPISGRGYKLR-----RYKGKVLLIVHFRVSGK 210 (307)
Q Consensus 140 ~~~~ft~ldG--~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llfPcnQFG~QEp-----gs~~EI~~~l~F~~pg~ 210 (307)
+++++.+++| +.++|++++||++||.- +||++|.+++|.|+.+..- +++.. .+.++++ +|+.
T Consensus 37 P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~---~~~~--- 107 (176)
T 3kh7_A 37 PAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAI---KWLN--- 107 (176)
T ss_dssp CCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHH---HHHH---
T ss_pred CCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHH---HHHH---
Confidence 3455566888 88999999999877444 9999999999988765432 44432 3445566 6884
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
+++++|+..- .|-++ .+.+ . | .|..-++.||||++|+|+.++.+..+++
T Consensus 108 ~~~~~~~~~~-~d~~~----~~~~----~-------~---------------~v~~~P~~~lid~~G~i~~~~~g~~~~~ 156 (176)
T 3kh7_A 108 ELHNPYLLSI-SDADG----TLGL----D-------L---------------GVYGAPETYLIDKQGIIRHKIVGVVDQK 156 (176)
T ss_dssp HTTCCCSEEE-EETTC----HHHH----H-------H---------------TCCSSCEEEEECTTCBEEEEEESCCCHH
T ss_pred HcCCCCceEE-ECCcc----hHHH----H-------c---------------CCCCCCeEEEECCCCeEEEEEcCCCCHH
Confidence 7889998531 22221 2221 1 1 1333468999999999999999999999
Q ss_pred cHHHHHHHHhhhhh
Q psy6055 291 ELEPDIVEELMKRE 304 (307)
Q Consensus 291 eLe~dIekLL~~~~ 304 (307)
+|++.|+++|++.+
T Consensus 157 ~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 157 VWREQLAPLYQQLL 170 (176)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 60
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.23 E-value=2.3e-12 Score=100.71 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=86.2
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC-----CChhhhccccceeecCCCC
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR-----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp-----gs~~EI~~~l~F~~pg~~y 212 (307)
++.++.++|+.+++++++||++||.- +||+.|.+++|.++.+. .+. +.+.. .+.++++ +|++ ++
T Consensus 6 ~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~---~~~~---~~ 77 (136)
T 1lu4_A 6 QFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQ---SFVS---KY 77 (136)
T ss_dssp CCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHH---HHHH---HH
T ss_pred CeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHH---HHHH---Hc
Confidence 35556789999999999999877555 89999999998886543 233 34332 2356677 6874 78
Q ss_pred CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec---CCCCc
Q psy6055 213 VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD---ASVEP 289 (307)
Q Consensus 213 gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~---p~~~P 289 (307)
+++||++. |.+ .. +.+.. .|..-++.||||++|+++ ++. +..++
T Consensus 78 ~~~~~~~~--d~~----~~----~~~~~----------------------~i~~~P~~~lid~~G~i~-~~~~~~g~~~~ 124 (136)
T 1lu4_A 78 NLNFTNLN--DAD----GV----IWARY----------------------NVPWQPAFVFYRADGTST-FVNNPTAAMSQ 124 (136)
T ss_dssp TCCSEEEE--CTT----SH----HHHHT----------------------TCCSSSEEEEECTTSCEE-EECCSSSCCCH
T ss_pred CCCceEEE--CCc----hh----HHHhc----------------------CCCCCCEEEEECCCCcEE-EEEcCCCccCH
Confidence 89999984 222 12 22222 244557999999999999 999 88899
Q ss_pred ccHHHHHHHHhh
Q psy6055 290 SELEPDIVEELM 301 (307)
Q Consensus 290 ~eLe~dIekLL~ 301 (307)
++|++.|+++|+
T Consensus 125 ~~l~~~l~~ll~ 136 (136)
T 1lu4_A 125 DELSGRVAALTS 136 (136)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
No 61
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=99.23 E-value=7.3e-12 Score=106.86 Aligned_cols=130 Identities=8% Similarity=-0.023 Sum_probs=86.0
Q ss_pred CCCCcccC--CCC---cccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccce
Q psy6055 140 SPENSGIG--GPD---RIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHF 205 (307)
Q Consensus 140 ~~~~ft~l--dG~---~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F 205 (307)
+++++.++ +|+ .++|+++ +||++||.. +||++|..++|.|+.++ .+.+.+++.. ++.++++ +|
T Consensus 8 P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~---~~ 84 (198)
T 1zof_A 8 PDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHF---AW 84 (198)
T ss_dssp CCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH---HH
T ss_pred CceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHH---HH
Confidence 34555567 898 9999999 999877544 79999999999987654 4444455543 2344555 57
Q ss_pred eecCCC-------CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCc
Q psy6055 206 RVSGKG-------FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGY 278 (307)
Q Consensus 206 ~~pg~~-------ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~ 278 (307)
++ . ++++||++. |.++ .+.+ ..+ ... . . . ...++.||||++|+
T Consensus 85 ~~---~~~~~~~~~~~~~~~~~--d~~~----~~~~----~~~----v~~--------~--~--g-~~~P~~~lid~~G~ 134 (198)
T 1zof_A 85 KN---TPVEKGGIGQVSFPMVA--DITK----SISR----DYD----VLF--------E--E--A-IALRGAFLIDKNMK 134 (198)
T ss_dssp HT---SCGGGTCCCCCSSCEEE--CTTS----HHHH----HTT----CEE--------T--T--T-EECEEEEEEETTTE
T ss_pred HH---hhhhcccccCceeEEEE--CCch----HHHH----HhC----Ccc--------c--C--C-cccceEEEECCCCE
Confidence 63 4 788999984 3221 2222 111 000 0 0 0 13468999999999
Q ss_pred EEEEecCCC----CcccHHHHHHHHhhh
Q psy6055 279 PVARYDASV----EPSELEPDIVEELMK 302 (307)
Q Consensus 279 VV~Ry~p~~----~P~eLe~dIekLL~~ 302 (307)
|+.++.+.. +.++|.+.|+++...
T Consensus 135 i~~~~~g~~~~~~~~~~l~~~l~~l~~~ 162 (198)
T 1zof_A 135 VRHAVINDLPLGRNADEMLRMVDALLHF 162 (198)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHHh
Confidence 999997755 456788888888753
No 62
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=99.23 E-value=4.2e-12 Score=102.29 Aligned_cols=126 Identities=14% Similarity=0.088 Sum_probs=90.5
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCcc-------CCChhhhccccceeecC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKL-------RRYKGKVLLIVHFRVSG 209 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QE-------pgs~~EI~~~l~F~~pg 209 (307)
+++.+.+++|+.++|++++ |++||+- +||++|.+++|.|+.+. .+ +++. ..+.++++ +|+
T Consensus 12 p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~~~~---~~~--- 81 (154)
T 3ia1_A 12 PDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTREVVL---EYM--- 81 (154)
T ss_dssp CCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHHHHH---HHH---
T ss_pred CceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHHHHH---HHH---
Confidence 4456667899999999999 9877555 89999999998886543 33 3332 13456677 688
Q ss_pred CCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCc
Q psy6055 210 KGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEP 289 (307)
Q Consensus 210 ~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P 289 (307)
.+++++||++.. ....... +... | .|..-++.||||++|+++.++.+..++
T Consensus 82 ~~~~~~~~~~~d---~~~~~~~----~~~~-------~---------------~v~~~P~~~lid~~G~i~~~~~g~~~~ 132 (154)
T 3ia1_A 82 KTYPRFIPLLAS---DRDRPHE----VAAR-------F---------------KVLGQPWTFVVDREGKVVALFAGRAGR 132 (154)
T ss_dssp TTCTTEEECBCC---SSCCHHH----HHTT-------S---------------SBCSSCEEEEECTTSEEEEEEESBCCH
T ss_pred HHcCCCcccccc---cccchHH----HHHH-------h---------------CCCcccEEEEECCCCCEEEEEcCCCCH
Confidence 489999999842 1111211 2211 2 234456899999999999999999999
Q ss_pred ccHHHHHHHHhhhhh
Q psy6055 290 SELEPDIVEELMKRE 304 (307)
Q Consensus 290 ~eLe~dIekLL~~~~ 304 (307)
++|++.|++++.+.+
T Consensus 133 ~~l~~~l~~~~~~~~ 147 (154)
T 3ia1_A 133 EALLDALLLAGADLE 147 (154)
T ss_dssp HHHHHHHHHTTCCC-
T ss_pred HHHHHHHHhccCccc
Confidence 999999999987654
No 63
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=99.23 E-value=7.5e-12 Score=100.33 Aligned_cols=126 Identities=15% Similarity=0.079 Sum_probs=88.4
Q ss_pred CCCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC-----CChhhhccccceeecCC
Q psy6055 139 ASPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR-----RYKGKVLLIVHFRVSGK 210 (307)
Q Consensus 139 ~~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp-----gs~~EI~~~l~F~~pg~ 210 (307)
.+++.+.. +|+.++|++++||++||+. +||+.|.+++|.|+.+. .+.+.|++.. .+.++++ +|+.
T Consensus 9 ~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~---~~~~--- 81 (152)
T 3gl3_A 9 APDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAM---KFLA--- 81 (152)
T ss_dssp CCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHH---HHHH---
T ss_pred CCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHH---HHHH---
Confidence 34466667 9999999999999877655 89999999998886543 4555455432 2345566 5774
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCc-
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEP- 289 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P- 289 (307)
+++++||++. |-++ .+ .+.. .|..-++.||||++|+++.++.+....
T Consensus 82 ~~~~~~~~~~--d~~~----~~----~~~~----------------------~v~~~P~~~lid~~G~i~~~~~g~~~~~ 129 (152)
T 3gl3_A 82 QVPAEFTVAF--DPKG----QT----PRLY----------------------GVKGMPTSFLIDRNGKVLLQHVGFRPAD 129 (152)
T ss_dssp HSCCCSEEEE--CTTC----HH----HHHT----------------------TCCSSSEEEEECTTSBEEEEEESCCTTT
T ss_pred HcCCCCceeE--CCcc----hh----HHHc----------------------CCCCCCeEEEECCCCCEEEEEccCCCcC
Confidence 8899999984 3221 22 2222 234446889999999999999886554
Q ss_pred -ccHHHHHHHHhhhh
Q psy6055 290 -SELEPDIVEELMKR 303 (307)
Q Consensus 290 -~eLe~dIekLL~~~ 303 (307)
++|++.|++++...
T Consensus 130 ~~~l~~~i~~~~~~~ 144 (152)
T 3gl3_A 130 KEALEQQILAALGGN 144 (152)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHccc
Confidence 58999999887654
No 64
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=9.7e-13 Score=107.10 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=85.2
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhh-hc-ccC-CCCCccCC----Ch-hhhccccceeecCC
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANV-VD-PIS-GRGYKLRR----YK-GKVLLIVHFRVSGK 210 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~l-lf-Pcn-QFG~QEpg----s~-~EI~~~l~F~~pg~ 210 (307)
++.+.+++|+.++|++++||++||.- +||++|.+++|.|+. ++ .+. +.+++... ++ +.++ +|. .
T Consensus 15 ~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~---~~~---~ 88 (159)
T 2ls5_A 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVL---AFA---K 88 (159)
Confidence 34555689999999999999877444 899999999998865 43 343 33444432 22 3455 687 4
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
+++++||++. |-++ .+.+ .|+. .+..-++.||||++|+++.++.+ .+++
T Consensus 89 ~~~~~~~~~~--d~~~----~~~~-----------~~~~-------------~~~~~P~~~lid~~G~i~~~~~g-~~~~ 137 (159)
T 2ls5_A 89 STGVTYPLGL--DPGA----DIFA-----------KYAL-------------RDAGITRNVLIDREGKIVKLTRL-YNEE 137 (159)
Confidence 8899999883 3221 1221 1220 12224588999999999999976 5677
Q ss_pred cHHHHHHHHhhhhh
Q psy6055 291 ELEPDIVEELMKRE 304 (307)
Q Consensus 291 eLe~dIekLL~~~~ 304 (307)
++++.|+++.....
T Consensus 138 ~l~~~l~~l~~~~~ 151 (159)
T 2ls5_A 138 EFASLVQQINEMLK 151 (159)
Confidence 78888877765443
No 65
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=99.21 E-value=1e-11 Score=101.14 Aligned_cols=121 Identities=8% Similarity=-0.086 Sum_probs=79.0
Q ss_pred CCCCcccCCCCcccCCCCCCC-eEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGP-SHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGK 210 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGK-VvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~ 210 (307)
.++.+.+.+|+.++|++++|| ++||+. +||++|..++|.|+.++ .+.+.+.+.. ++.++++ +|++
T Consensus 16 p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~---~~~~--- 89 (160)
T 1xvw_A 16 PDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHK---IWAT--- 89 (160)
T ss_dssp CCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHH---HHHH---
T ss_pred CCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHH---HHHH---
Confidence 345555689999999999999 766544 89999999999887654 5555566543 3445666 6884
Q ss_pred CCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 211 GFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 211 ~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
+++++||++. |.. ....+.+ ..+ .... . ..+. +.+.||||++|+|+.++.+..+..
T Consensus 90 ~~~~~~~~~~--d~~--~~~~~~~----~~~----v~~~----------~-~~~p-~~~~~lid~~G~i~~~~~g~~~~~ 145 (160)
T 1xvw_A 90 QSGFTFPLLS--DFW--PHGAVSQ----AYG----VFNE----------Q-AGIA-NRGTFVVDRSGIIRFAEMKQPGEV 145 (160)
T ss_dssp HHTCCSCEEE--CTT--TTTHHHH----HTT----CEET----------T-TTEE-CSEEEEECTTSBEEEEEECCTTCC
T ss_pred hcCCCceEEe--cCC--cChHHHH----HcC----Cccc----------c-CCCe-eeeEEEECCCCeEEEEEecCCCCC
Confidence 7899999984 220 0122222 221 1100 0 0010 237899999999999998876554
No 66
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.19 E-value=1.1e-11 Score=105.65 Aligned_cols=120 Identities=9% Similarity=0.017 Sum_probs=81.2
Q ss_pred C--CcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCC----Cc
Q psy6055 149 P--DRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGF----VP 214 (307)
Q Consensus 149 G--~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~y----gv 214 (307)
| +.++|++++||++||.. +||++|..++|.|+.++ .+.+.+++.. .+.++++ +|++ .+ ++
T Consensus 33 G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~---~~~~---~~~~~~~~ 106 (195)
T 2bmx_A 33 DYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHF---QWRA---QHNDLKTL 106 (195)
T ss_dssp GGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH---HHHH---HCTTGGGC
T ss_pred CCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH---HHHH---HhccccCC
Confidence 7 89999999999877544 79999999999887554 4544455543 2345566 5774 55 78
Q ss_pred cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC----Ccc
Q psy6055 215 KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV----EPS 290 (307)
Q Consensus 215 ~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~----~P~ 290 (307)
+||++. |.+ ..+.+.+.-... .. ...++.||||++|+|+.++.+.. +++
T Consensus 107 ~~~~~~--d~~----~~~~~~~~v~~~--------------------~g-~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ 159 (195)
T 2bmx_A 107 PFPMLS--DIK----RELSQAAGVLNA--------------------DG-VADRVTFIVDPNNEIQFVSATAGSVGRNVD 159 (195)
T ss_dssp CSCEEE--CTT----SHHHHHHTCBCT--------------------TS-SBCEEEEEECTTSBEEEEEEECTTCCCCHH
T ss_pred ceeEEe--CCc----hHHHHHhCCccc--------------------CC-CccceEEEEcCCCeEEEEEecCCCCCCCHH
Confidence 999984 321 233332211100 00 02358899999999999997654 567
Q ss_pred cHHHHHHHHhh
Q psy6055 291 ELEPDIVEELM 301 (307)
Q Consensus 291 eLe~dIekLL~ 301 (307)
+|.+.|++++.
T Consensus 160 ~l~~~l~~l~~ 170 (195)
T 2bmx_A 160 EVLRVLDALQS 170 (195)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 88888888874
No 67
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=99.19 E-value=8.2e-12 Score=96.98 Aligned_cols=121 Identities=10% Similarity=0.024 Sum_probs=87.0
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCcc-----CCChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKL-----RRYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QE-----pgs~~EI~~~l~F~~pg~~ 211 (307)
+.+.++.++|+.+++++++||++||.- +||+.|...+|.|+.+. .+. +.+. ..+.++++ +|+. .
T Consensus 6 p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~---~~~~---~ 77 (136)
T 1zzo_A 6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQ---EFVN---K 77 (136)
T ss_dssp GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHH---HHHH---H
T ss_pred CCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHH---HHHH---H
Confidence 345566789999999999999877554 89999999988886543 233 3332 23355666 5774 7
Q ss_pred CCc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc
Q psy6055 212 FVP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS 290 (307)
Q Consensus 212 ygv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~ 290 (307)
+++ +||++. +.+ ..+. +.. .|..-++.||||++|+++ ++.+..+.+
T Consensus 78 ~~~~~~~~~~--d~~----~~~~----~~~----------------------~i~~~P~~~~id~~g~i~-~~~g~~~~~ 124 (136)
T 1zzo_A 78 YPVKTFTQLA--DTD----GSVW----ANF----------------------GVTQQPAYAFVDPHGNVD-VVRGRMSQD 124 (136)
T ss_dssp TTCTTSEEEE--CTT----CHHH----HHT----------------------TCCSSSEEEEECTTCCEE-EEESCCCHH
T ss_pred cCCCceEEEE--cCC----cHHH----HHc----------------------CCCCCceEEEECCCCCEE-EEecCCCHH
Confidence 888 899884 221 1222 221 234456899999999999 999999999
Q ss_pred cHHHHHHHHhh
Q psy6055 291 ELEPDIVEELM 301 (307)
Q Consensus 291 eLe~dIekLL~ 301 (307)
+|++.|+++|+
T Consensus 125 ~l~~~l~~~l~ 135 (136)
T 1zzo_A 125 ELTRRVTALTS 135 (136)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 99999999885
No 68
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=99.19 E-value=6.6e-12 Score=110.46 Aligned_cols=119 Identities=11% Similarity=-0.033 Sum_probs=76.8
Q ss_pred CCCcccC-CC--CcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecC
Q psy6055 141 PENSGIG-GP--DRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSG 209 (307)
Q Consensus 141 ~~~ft~l-dG--~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg 209 (307)
++++..+ || +.++|++|+||++||+. +||++|..++|.|+.++ .+.+.|++.. ++.++++ +|++
T Consensus 48 ~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~---~~~~-- 122 (222)
T 3ztl_A 48 EFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHL---AWDN-- 122 (222)
T ss_dssp CCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH---HHHH--
T ss_pred CeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH---HHHH--
Confidence 3444444 55 99999999999877544 79999999999997654 5666666654 2334455 4553
Q ss_pred CCC-------CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy6055 210 KGF-------VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 210 ~~y-------gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~R 282 (307)
.+ +++||++. |.+ ..+.+ ..+ .... . .-...++.||||++|+|+.+
T Consensus 123 -~~~~~~~~~~~~~~~l~--D~~----~~~~~----~yg----v~~~----------~--~g~~~P~~~lID~~G~I~~~ 175 (222)
T 3ztl_A 123 -LDRKSGGLGHMKIPLLA--DRK----QEISK----AYG----VFDE----------E--DGNAFRGLFIIDPNGILRQI 175 (222)
T ss_dssp -SCGGGTSCCSCSSCEEE--CSS----SHHHH----HTT----CBCT----------T--TSSBCEEEEEECTTSEEEEE
T ss_pred -HhhhhccccccceeEEe--CCc----hHHHH----HcC----Ceec----------C--CCCccceEEEECCCCeEEEE
Confidence 33 88999984 322 12222 111 0000 0 00145789999999999999
Q ss_pred ecCCCCccc
Q psy6055 283 YDASVEPSE 291 (307)
Q Consensus 283 y~p~~~P~e 291 (307)
+.+....+.
T Consensus 176 ~~g~~~~~~ 184 (222)
T 3ztl_A 176 TINDKPVGR 184 (222)
T ss_dssp EEECTTBCC
T ss_pred EecCCCCCC
Confidence 987766653
No 69
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=99.18 E-value=7.9e-12 Score=102.26 Aligned_cols=120 Identities=10% Similarity=-0.048 Sum_probs=84.1
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccC---------------------CCCCccCCCh
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PIS---------------------GRGYKLRRYK 196 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-Pcn---------------------QFG~QEpgs~ 196 (307)
.+.+..++|+.++|++++||++||.- +||++|..++|.|+.++ .+. +++.++..+.
T Consensus 19 ~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~ 98 (165)
T 3ha9_A 19 SFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTP 98 (165)
T ss_dssp CCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCH
T ss_pred CCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCH
Confidence 45566789999999999999877554 89999999988876432 222 2222222455
Q ss_pred hhhccccceeecCCCCCc-cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECC
Q psy6055 197 GKVLLIVHFRVSGKGFVP-KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGA 275 (307)
Q Consensus 197 ~EI~~~l~F~~pg~~ygv-~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDr 275 (307)
++++ +|++ ++++ +||++. + + ..+. ... .|.+.++.||||+
T Consensus 99 ~~~~---~~~~---~~~~~~~~~~~--d-~----~~~~----~~~----------------------~v~~~P~~~lid~ 139 (165)
T 3ha9_A 99 EMFR---KFIA---NYGDPSWIMVM--D-D----GSLV----EKF----------------------NVRSIDYIVIMDK 139 (165)
T ss_dssp HHHH---HHHH---HHSCTTSEEEE--C-C----SHHH----HHT----------------------TCCSSSEEEEEET
T ss_pred HHHH---HHHH---HcCCCCeeEEe--C-h----HHHH----HHh----------------------CCCCceEEEEEcC
Confidence 6677 6884 7888 999984 3 2 2222 221 2556689999999
Q ss_pred CCcEEEEecCCC-CcccHHHHHHHHhh
Q psy6055 276 RGYPVARYDASV-EPSELEPDIVEELM 301 (307)
Q Consensus 276 dG~VV~Ry~p~~-~P~eLe~dIekLL~ 301 (307)
+|+++. .+.. +.++|++.|+++|.
T Consensus 140 ~G~i~~--~g~~~~~~~l~~~l~~l~~ 164 (165)
T 3ha9_A 140 SSNVLY--AGTTPSLGELESVIKSVQG 164 (165)
T ss_dssp TCCEEE--EEESCCHHHHHHHHHHC--
T ss_pred CCcEEE--eCCCCCHHHHHHHHHHHhc
Confidence 999999 4555 78889999988874
No 70
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.16 E-value=4.2e-12 Score=111.33 Aligned_cols=122 Identities=7% Similarity=-0.053 Sum_probs=81.3
Q ss_pred CCCcccCCCCCCCeEEEEc----CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecCCCC------
Q psy6055 148 GPDRIDGSRLRGPSHRSVG----TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSGKGF------ 212 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN----S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg~~y------ 212 (307)
+|+.++|++|+||++| || +||+.|..++|.|+.++ .+.+.+++.. .+.++++ +|++ .+
T Consensus 37 ~g~~v~l~d~~Gk~vv-l~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~---~~~~---~~~~~~g~ 109 (211)
T 2pn8_A 37 EFKELKLTDYRGKYLV-FFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL---AWIN---TPRRQGGL 109 (211)
T ss_dssp EEEEEEGGGGTTSEEE-EEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH---HHHT---SCGGGTCC
T ss_pred CCcEEEHHHhCCCeEE-EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH---HHHH---HhhhccCc
Confidence 3589999999999866 55 79999999999997654 4555566654 2344555 5774 55
Q ss_pred -CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC----
Q psy6055 213 -VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV---- 287 (307)
Q Consensus 213 -gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~---- 287 (307)
+++||++. |.++ .+. +..+ .... ..-...++.||||++|+|+.++.+..
T Consensus 110 ~~~~fp~l~--D~~~----~~~----~~yg----v~~~------------~~g~~~p~~~lID~~G~I~~~~~g~~~~~~ 163 (211)
T 2pn8_A 110 GPIRIPLLS--DLTH----QIS----KDYG----VYLE------------DSGHTLRGLFIIDDKGILRQITLNDLPVGR 163 (211)
T ss_dssp CSCSSCEEE--CTTS----HHH----HHTT----CEET------------TTTEECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred cCCceEEEE--CCch----HHH----HHcC----Cccc------------CCCcccceEEEECCCCEEEEEEecCCCCCC
Confidence 78999984 3222 222 1111 0000 00024679999999999999986543
Q ss_pred CcccHHHHHHHHhhh
Q psy6055 288 EPSELEPDIVEELMK 302 (307)
Q Consensus 288 ~P~eLe~dIekLL~~ 302 (307)
+.++|.+.|++|+..
T Consensus 164 ~~~ell~~l~~l~~~ 178 (211)
T 2pn8_A 164 SVDETLRLVQAFQYT 178 (211)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhc
Confidence 446788888887753
No 71
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=99.15 E-value=2.1e-11 Score=97.65 Aligned_cols=119 Identities=7% Similarity=-0.055 Sum_probs=78.5
Q ss_pred CCCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhh---hc-ccCCCCCccC-----CChhhhccccceee
Q psy6055 139 ASPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANV---VD-PISGRGYKLR-----RYKGKVLLIVHFRV 207 (307)
Q Consensus 139 ~~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~l---lf-PcnQFG~QEp-----gs~~EI~~~l~F~~ 207 (307)
.+++++++++|+.++|++++||++||.- +||++|..++|.|+. ++ .+.+.+++.. .+.++++ +|+.
T Consensus 11 ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~---~~~~ 87 (142)
T 3eur_A 11 ALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWK---KHRN 87 (142)
T ss_dssp CCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHH---HHGG
T ss_pred cCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHH---HHHH
Confidence 3445556789999999999999877444 899999999999876 44 4555555543 2234455 5774
Q ss_pred cCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC
Q psy6055 208 SGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV 287 (307)
Q Consensus 208 pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~ 287 (307)
+++.+||... |-++. .+ + .. .| .|..-++.||||++|+|+.+..+
T Consensus 88 ---~~~~~~~~~~--d~~~~-----~~-~---~~----~~---------------~v~~~P~~~lid~~G~i~~~~~~-- 132 (142)
T 3eur_A 88 ---DFAKEWTNGY--DKELV-----IK-N---KN----LY---------------DLRAIPTLYLLDKNKTVLLKDAT-- 132 (142)
T ss_dssp ---GSCTTSEEEE--CTTCH-----HH-H---TT----CS---------------CCTTCSEEEEECTTCBEEEEEEC--
T ss_pred ---hccccccccc--Cccch-----hh-h---hh----hc---------------CCCcCCeEEEECCCCcEEecCCC--
Confidence 7888888762 22111 00 0 10 12 34555799999999999999863
Q ss_pred CcccHHHHH
Q psy6055 288 EPSELEPDI 296 (307)
Q Consensus 288 ~P~eLe~dI 296 (307)
.++|++.|
T Consensus 133 -~~~l~~~l 140 (142)
T 3eur_A 133 -LQKVEQYL 140 (142)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 44444444
No 72
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=99.14 E-value=1.8e-11 Score=107.43 Aligned_cols=130 Identities=9% Similarity=-0.038 Sum_probs=85.9
Q ss_pred CCCCcccC--CC--CcccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhcccccee
Q psy6055 140 SPENSGIG--GP--DRIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFR 206 (307)
Q Consensus 140 ~~~~ft~l--dG--~~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~ 206 (307)
+++++..+ +| +.++|++| +||++||+- +||++|..++|.|+.++ .+.+.+++.. ++.++++ +|+
T Consensus 28 P~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~---~~~ 104 (213)
T 2i81_A 28 PFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHL---AWK 104 (213)
T ss_dssp CCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH---HHH
T ss_pred CCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH---HHH
Confidence 33445556 89 89999999 999877444 79999999999987654 4555566653 2344555 577
Q ss_pred ecCCCC-------CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcE
Q psy6055 207 VSGKGF-------VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYP 279 (307)
Q Consensus 207 ~pg~~y-------gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~V 279 (307)
+ .+ +++||++. |.+ ..+. +. ||. .. . .. ...++.||||++|+|
T Consensus 105 ~---~~~~~~g~~~~~fp~l~--D~~----~~~~----~~-------ygv-------~~-~-~g-~~~p~~~lID~~G~i 154 (213)
T 2i81_A 105 K---TPLAKGGIGNIKHTLLS--DIT----KSIS----KD-------YNV-------LF-D-DS-VSLRAFVLIDMNGIV 154 (213)
T ss_dssp S---SCGGGTCCCSCSSEEEE--CTT----SHHH----HH-------TTC-------EE-T-TT-EECEEEEEECTTSBE
T ss_pred H---HHHhhCCccCCCceEEE--CCc----hHHH----HH-------hCC-------cc-c-cC-CcccEEEEECCCCEE
Confidence 4 55 78999984 322 1222 21 220 00 0 00 145689999999999
Q ss_pred EEEecCCC----CcccHHHHHHHHhhh
Q psy6055 280 VARYDASV----EPSELEPDIVEELMK 302 (307)
Q Consensus 280 V~Ry~p~~----~P~eLe~dIekLL~~ 302 (307)
+.++.+.. +.++|.+.|++|+..
T Consensus 155 ~~~~~~~~~~~~~~~ell~~l~~l~~~ 181 (213)
T 2i81_A 155 QHLLVNNLAIGRSVDEILRIIDAIQHH 181 (213)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhh
Confidence 99986543 356888889888743
No 73
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=99.14 E-value=2e-11 Score=104.87 Aligned_cols=130 Identities=8% Similarity=-0.084 Sum_probs=84.9
Q ss_pred CCCcccC--CC--CcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeec
Q psy6055 141 PENSGIG--GP--DRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVS 208 (307)
Q Consensus 141 ~~~ft~l--dG--~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~p 208 (307)
++.+..+ || +.++|++|+||++||+. +||++|..++|.|+.++ .+.+.+.+.. .+.++++ +|++
T Consensus 14 ~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~---~~~~- 89 (202)
T 1uul_A 14 DFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHL---AWTS- 89 (202)
T ss_dssp CCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH---HHHH-
T ss_pred CcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH---HHHH-
Confidence 3444445 78 89999999999877544 79999999999887654 4555566653 2344555 5774
Q ss_pred CCCC-------CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEE
Q psy6055 209 GKGF-------VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVA 281 (307)
Q Consensus 209 g~~y-------gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~ 281 (307)
.+ +++||++. |.+ ..+.+.+.-.... ..+ -.++.||||++|+|+.
T Consensus 90 --~~~~~~~~~~~~~p~l~--D~~----~~~~~~ygv~~~~-------------------~g~-~~P~~~lid~~G~i~~ 141 (202)
T 1uul_A 90 --IERKRGGLGQMNIPILA--DKT----KCIMKSYGVLKEE-------------------DGV-AYRGLFIIDPKQNLRQ 141 (202)
T ss_dssp --SCGGGTCCCSCSSCEEE--CTT----CHHHHHHTCEETT-------------------TTE-ECEEEEEECTTSBEEE
T ss_pred --HHHhhCCCCCCceeEEE--CCc----hHHHHHcCCccCC-------------------CCc-eeeEEEEECCCCEEEE
Confidence 55 78999984 322 2333322111000 000 2358899999999999
Q ss_pred EecCCCC----cccHHHHHHHHhhh
Q psy6055 282 RYDASVE----PSELEPDIVEELMK 302 (307)
Q Consensus 282 Ry~p~~~----P~eLe~dIekLL~~ 302 (307)
++.+... .++|.+.|++|+..
T Consensus 142 ~~~g~~~~~~~~~ell~~l~~l~~~ 166 (202)
T 1uul_A 142 ITVNDLPVGRDVDEALRLVKAFQFV 166 (202)
T ss_dssp EEEECTTBCCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHHHHHHHhhhh
Confidence 9866543 36788888888753
No 74
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=99.13 E-value=3.3e-11 Score=96.70 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=88.6
Q ss_pred CCCCcccCCC--------CcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhcccCCCCCcc-----CCChhhhccccc
Q psy6055 140 SPENSGIGGP--------DRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVDPISGRGYKL-----RRYKGKVLLIVH 204 (307)
Q Consensus 140 ~~~~ft~ldG--------~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llfPcnQFG~QE-----pgs~~EI~~~l~ 204 (307)
+++.++.++| +.+++++++||++||.- +||++|.+++|.|+.+..-.+ ++. ..+.++++ +
T Consensus 15 p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~~~--v~~v~v~~~~~~~~~~---~ 89 (156)
T 1kng_A 15 PQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKR--FQLVGINYKDAADNAR---R 89 (156)
T ss_dssp CCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT--SEEEEEEESCCHHHHH---H
T ss_pred CCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhcCC--eEEEEEECCCCHHHHH---H
Confidence 4455667888 99999999999877444 899999999988876543211 222 13345566 5
Q ss_pred eeecCCCCCccce-eecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 205 FRVSGKGFVPKFD-VFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 205 F~~pg~~ygv~FP-Vf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
|+. .++++|| +. .|-+ .. +.... .|..-++.||||++|+++.++
T Consensus 90 ~~~---~~~~~~~~~~--~d~~----~~----~~~~~----------------------~v~~~P~~~~id~~G~i~~~~ 134 (156)
T 1kng_A 90 FLG---RYGNPFGRVG--VDAN----GR----ASIEW----------------------GVYGVPETFVVGREGTIVYKL 134 (156)
T ss_dssp HHH---HHCCCCSEEE--EETT----SH----HHHHT----------------------TCCSSCEEEEECTTSBEEEEE
T ss_pred HHH---HcCCCCceee--eCch----hH----HHHhc----------------------CcCccCeEEEEcCCCCEEEEE
Confidence 774 7888898 44 2211 12 22221 244557889999999999999
Q ss_pred cCCCCcccHHHHHHHHhhhhh
Q psy6055 284 DASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~~~ 304 (307)
.+..+.++|++.|+++|++.+
T Consensus 135 ~g~~~~~~l~~~l~~~l~~~~ 155 (156)
T 1kng_A 135 VGPITPDNLRSVLLPQMEKAL 155 (156)
T ss_dssp ESCCCHHHHHHTHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999997653
No 75
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=99.12 E-value=3.1e-12 Score=105.15 Aligned_cols=129 Identities=8% Similarity=-0.029 Sum_probs=84.0
Q ss_pred CCCCcccCCCCcccCCCCCCC--eEEEEc----CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeec
Q psy6055 140 SPENSGIGGPDRIDGSRLRGP--SHRSVG----TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVS 208 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGK--VvLVVN----S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~p 208 (307)
.++.+.+.+|+.++|++++|| ++| || +||+.|..++|.|+.++ .+.+.| +.. .+.++++ +|++
T Consensus 14 P~f~l~~~~G~~v~l~~~~gk~~~vv-l~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~---~~~~- 87 (159)
T 2a4v_A 14 PDLSLLNEDNDSISLKKITENNRVVV-FFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQK---KFQS- 87 (159)
T ss_dssp CSCEEECTTSCEEEHHHHHHHCSEEE-EEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHH---HHHH-
T ss_pred CCeEEECCCCCEEeHHHHhCCCCeEE-EEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHH---HHHH-
Confidence 345555689999999999997 544 55 79999999999997654 466666 553 3445566 6884
Q ss_pred CCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCC
Q psy6055 209 GKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVE 288 (307)
Q Consensus 209 g~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~ 288 (307)
+++++||++. |.++ .+.+-+. ... .|. . . -..+.||| ++|+|+.++.+...
T Consensus 88 --~~~~~~~~l~--D~~~----~~~~~~g--------v~~--------~p~-~-g--~~~~~~li-~~G~i~~~~~g~~~ 138 (159)
T 2a4v_A 88 --KQNLPYHLLS--DPKR----EFIGLLG--------AKK--------TPL-S-G--SIRSHFIF-VDGKLKFKRVKISP 138 (159)
T ss_dssp --HHTCSSEEEE--CTTC----HHHHHHT--------CBS--------SSS-S-C--BCCEEEEE-ETTEEEEEEESCCH
T ss_pred --HhCCCceEEE--CCcc----HHHHHhC--------Ccc--------ccc-C-C--ccceEEEE-cCCEEEEEEccCCc
Confidence 7899999984 4332 2222111 111 010 0 1 12488999 99999999987554
Q ss_pred c---ccHHHHHHHHhhhh
Q psy6055 289 P---SELEPDIVEELMKR 303 (307)
Q Consensus 289 P---~eLe~dIekLL~~~ 303 (307)
. +++.+.|+++|++.
T Consensus 139 ~~~~~~~~~~l~~~l~~l 156 (159)
T 2a4v_A 139 EVSVNDAKKEVLEVAEKF 156 (159)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 4 34555666666544
No 76
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=99.12 E-value=4e-11 Score=101.77 Aligned_cols=130 Identities=11% Similarity=-0.034 Sum_probs=84.4
Q ss_pred CCCCcccC--CC--CcccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhcccccee
Q psy6055 140 SPENSGIG--GP--DRIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFR 206 (307)
Q Consensus 140 ~~~~ft~l--dG--~~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~ 206 (307)
+++.+..+ +| +.++|++| +||++||.- +||++|..++|.|+.++ .+.+.+.+.. .+.++++ +|+
T Consensus 7 P~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~---~~~ 83 (192)
T 2h01_A 7 PSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHL---AWK 83 (192)
T ss_dssp CCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH---HHH
T ss_pred CCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHH---HHH
Confidence 33445556 89 99999999 999877544 79999999999887554 4544556553 2344555 577
Q ss_pred ecCCCC-------CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcE
Q psy6055 207 VSGKGF-------VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYP 279 (307)
Q Consensus 207 ~pg~~y-------gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~V 279 (307)
+ .+ +++||++. |.+ ..+.+ .. |. .. . ..+ -.++.||||++|+|
T Consensus 84 ~---~~~~~~~~~~~~~~~l~--D~~----~~~~~----~~-------gv-------~~-~-~g~-~~P~~~liD~~G~i 133 (192)
T 2h01_A 84 K---TPLSQGGIGNIKHTLIS--DIS----KSIAR----SY-------DV-------LF-N-ESV-ALRAFVLIDKQGVV 133 (192)
T ss_dssp T---SCGGGTCCCSCSSEEEE--CTT----SHHHH----HT-------TC-------EE-T-TTE-ECCEEEEECTTSBE
T ss_pred H---hHHhhCCccCCCcCeEE--CCc----HHHHH----Hh-------CC-------cC-c-CCc-eeeEEEEEcCCCEE
Confidence 3 55 78999984 322 22222 11 10 00 0 000 23589999999999
Q ss_pred EEEecCCC----CcccHHHHHHHHhhh
Q psy6055 280 VARYDASV----EPSELEPDIVEELMK 302 (307)
Q Consensus 280 V~Ry~p~~----~P~eLe~dIekLL~~ 302 (307)
+.++.+.. +.++|.+.|++|...
T Consensus 134 ~~~~~g~~~~~~~~~~l~~~l~~l~~~ 160 (192)
T 2h01_A 134 QHLLVNNLALGRSVDEILRLIDALQHH 160 (192)
T ss_dssp EEEEEGGGSSGGGHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhhh
Confidence 99997643 356788888887753
No 77
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=99.11 E-value=5.5e-11 Score=97.05 Aligned_cols=120 Identities=8% Similarity=0.028 Sum_probs=82.9
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccCC--ChhhhccccceeecCCCCCc
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLRR--YKGKVLLIVHFRVSGKGFVP 214 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEpg--s~~EI~~~l~F~~pg~~ygv 214 (307)
+++.+.+++|+.++|++++||++||+- +||++|..++|.|+.+. .+.+.+++... .+.+++ +|+ ..+++
T Consensus 22 p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~---~~~---~~~~~ 95 (158)
T 3hdc_A 22 PNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFP---EKY---RRAPV 95 (158)
T ss_dssp CCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCC---GGG---GGCCC
T ss_pred CCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHH---HHH---HHcCC
Confidence 345556789999999999999877555 89999999998886544 45544454432 234566 577 48899
Q ss_pred cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc--cH
Q psy6055 215 KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS--EL 292 (307)
Q Consensus 215 ~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~--eL 292 (307)
+||++. |-+ .. +.+.. .|..-++.||||++|+++.++.+..+.+ ++
T Consensus 96 ~~~~~~--d~~----~~----~~~~~----------------------~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~ 143 (158)
T 3hdc_A 96 SFNFLS--DAT----GQ----VQQRY----------------------GANRLPDTFIVDRKGIIRQRVTGGIEWDAPKV 143 (158)
T ss_dssp SCEEEE--CTT----SH----HHHHT----------------------TCCSSSEEEEECTTSBEEEEEESCCCTTSHHH
T ss_pred CceEEE--Cch----HH----HHHHh----------------------CCCCcceEEEEcCCCCEEEEEeCCCccchHHH
Confidence 999984 221 12 22222 2445568999999999999999987766 34
Q ss_pred HHHHH
Q psy6055 293 EPDIV 297 (307)
Q Consensus 293 e~dIe 297 (307)
.+.|+
T Consensus 144 ~~~~~ 148 (158)
T 3hdc_A 144 VSYLK 148 (158)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 78
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=99.09 E-value=3.3e-11 Score=98.83 Aligned_cols=125 Identities=14% Similarity=-0.009 Sum_probs=88.3
Q ss_pred CCCCcccC--CCCcccCCCC-CCCeEEEEc--CCCCCCcCcchhhhhhcccCCCCCccC-----CChhhhccccceeecC
Q psy6055 140 SPENSGIG--GPDRIDGSRL-RGPSHRSVG--TDHIVVPSRLPSANVVDPISGRGYKLR-----RYKGKVLLIVHFRVSG 209 (307)
Q Consensus 140 ~~~~ft~l--dG~~vdLS~y-KGKVvLVVN--S~Cg~c~qe~p~L~llfPcnQFG~QEp-----gs~~EI~~~l~F~~pg 209 (307)
+++++..+ +|+.++++++ +||++||.- +||++|.+++|.|+.+..- +++.. .+.++++ +|+.
T Consensus 29 P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~---~~~~-- 100 (168)
T 2b1k_A 29 PKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAI---SWLK-- 100 (168)
T ss_dssp CCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHH---HHHH--
T ss_pred CCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHH---HHHH--
Confidence 34555567 8999999984 999877544 8999999999988765431 34432 3345566 6874
Q ss_pred CCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCc
Q psy6055 210 KGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEP 289 (307)
Q Consensus 210 ~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P 289 (307)
+++++||++. .|.+ ..+. ... .|..-++.||||++|+++.++.+..++
T Consensus 101 -~~~~~~~~~~-~d~~----~~~~----~~~----------------------~v~~~P~~~lid~~G~i~~~~~g~~~~ 148 (168)
T 2b1k_A 101 -ELGNPYALSL-FDGD----GMLG----LDL----------------------GVYGAPETFLIDGNGIIRYRHAGDLNP 148 (168)
T ss_dssp -HHCCCCSEEE-EETT----CHHH----HHH----------------------TCCSSSEEEEECTTSBEEEEEESCCCH
T ss_pred -HcCCCCceee-ECcc----hHHH----HHc----------------------CccccCEEEEECCCCeEEEEEeCCCCH
Confidence 7888998531 2222 1121 111 244557899999999999999999999
Q ss_pred ccHHHHHHHHhhhhh
Q psy6055 290 SELEPDIVEELMKRE 304 (307)
Q Consensus 290 ~eLe~dIekLL~~~~ 304 (307)
++|++.|+++|.+.+
T Consensus 149 ~~l~~~l~~~l~~~~ 163 (168)
T 2b1k_A 149 RVWEEEIKPLWEKYS 163 (168)
T ss_dssp HHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 79
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=99.09 E-value=3.3e-11 Score=94.78 Aligned_cols=117 Identities=12% Similarity=-0.011 Sum_probs=83.3
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccC--------CChhhhccccceeecC
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLR--------RYKGKVLLIVHFRVSG 209 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEp--------gs~~EI~~~l~F~~pg 209 (307)
++.+++++|+.++|++ +||++||+- +||++|.+++|.|+.+. .+.+.+++.. ++.++++ +|++
T Consensus 17 ~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~---~~~~-- 90 (145)
T 3erw_A 17 VFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVE---DFIK-- 90 (145)
T ss_dssp EEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHH---HHHH--
T ss_pred CceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHH---HHHH--
Confidence 3445568999999999 999877555 89999999998886543 3443334331 2445666 6884
Q ss_pred CCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCc
Q psy6055 210 KGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEP 289 (307)
Q Consensus 210 ~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P 289 (307)
.++++||++. +-+ ..+. +.. .|..-++.||||++|+++.++.+..+.
T Consensus 91 -~~~~~~~~~~--d~~----~~~~----~~~----------------------~v~~~P~~~lid~~G~i~~~~~g~~~~ 137 (145)
T 3erw_A 91 -ANKLTFPIVL--DSK----GELM----KEY----------------------HIITIPTSFLLNEKGEIEKTKIGPMTA 137 (145)
T ss_dssp -HTTCCSCEEE--CSS----SHHH----HHT----------------------TCCEESEEEEECTTCCEEEEEESCCCH
T ss_pred -HcCCceeEEE--cCc----hhHH----Hhc----------------------CcCccCeEEEEcCCCcEEEEEcCCcCH
Confidence 7899999883 221 1222 222 245557899999999999999999998
Q ss_pred ccHHHHH
Q psy6055 290 SELEPDI 296 (307)
Q Consensus 290 ~eLe~dI 296 (307)
++|++.|
T Consensus 138 ~~l~~~l 144 (145)
T 3erw_A 138 EQLKEWT 144 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8887766
No 80
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=99.08 E-value=7.1e-11 Score=107.51 Aligned_cols=120 Identities=8% Similarity=-0.046 Sum_probs=75.8
Q ss_pred CCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecCCCC-------
Q psy6055 148 GPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSGKGF------- 212 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg~~y------- 212 (307)
+|+.++|++|+||++||+. +||+.|..++|.|+.++ .+.+.|+++.+ +.++++ +|++ .+
T Consensus 80 ~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~---~~~~---~~~~~~g~~ 153 (254)
T 3tjj_A 80 EFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHL---AWIN---TPRRQGGLG 153 (254)
T ss_dssp EEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH---HHHT---SCGGGTSCC
T ss_pred CCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHH---HHHH---HHHHhcCCc
Confidence 5789999999999776444 79999999999997654 56666777642 334444 4663 44
Q ss_pred CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc--
Q psy6055 213 VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS-- 290 (307)
Q Consensus 213 gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~-- 290 (307)
+++||++. |.++ .+.+.+. .+.. + .. .-..+.||||++|+|+.++.......
T Consensus 154 ~~~fp~l~--D~~~----~va~~yg--------v~~~-------~----~g-~~~p~tflID~~G~I~~~~~~~~~~~~~ 207 (254)
T 3tjj_A 154 PIRIPLLS--DLTH----QISKDYG--------VYLE-------D----SG-HTLRGLFIIDDKGILRQITLNDLPVGRS 207 (254)
T ss_dssp SCSSCEEE--CTTS----HHHHHHT--------CEET-------T----TT-EECEEEEEECTTSBEEEEEEECTTCCCC
T ss_pred ccccceee--CcHH----HHHHHcC--------Cccc-------c----CC-CccceEEEECCCCeEEEEEecCCCCCCC
Confidence 78999984 4332 2222111 1100 0 00 11257899999999999987644433
Q ss_pred --cHHHHHHHH
Q psy6055 291 --ELEPDIVEE 299 (307)
Q Consensus 291 --eLe~dIekL 299 (307)
++.+.|+++
T Consensus 208 ~~eil~~L~al 218 (254)
T 3tjj_A 208 VDETLRLVQAF 218 (254)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 444455443
No 81
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=99.06 E-value=1.3e-11 Score=106.12 Aligned_cols=131 Identities=11% Similarity=0.003 Sum_probs=82.6
Q ss_pred CCCCcc-cCCCCcccCCC-CCCCeEEEEc---CCCCCCc-Ccchhhhhhc-ccCCCCCccCC----C-hhhhccccceee
Q psy6055 140 SPENSG-IGGPDRIDGSR-LRGPSHRSVG---TDHIVVP-SRLPSANVVD-PISGRGYKLRR----Y-KGKVLLIVHFRV 207 (307)
Q Consensus 140 ~~~~ft-~ldG~~vdLS~-yKGKVvLVVN---S~Cg~c~-qe~p~L~llf-PcnQFG~QEpg----s-~~EI~~~l~F~~ 207 (307)
+++++. +.+|+.++|++ ++||+++|+| +||++|. +++|.|+.++ .+.+.|.++.+ + .+..+ +|++
T Consensus 22 Pdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~---~f~~ 98 (173)
T 3mng_A 22 PAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTG---EWGR 98 (173)
T ss_dssp CCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHH---HHHH
T ss_pred CCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHH---HHHH
Confidence 344445 67999999999 6999877788 8999999 7999997654 57777887764 2 23344 6884
Q ss_pred cCCCCCcc--ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCC--CCCCCcccceEEEECCCCcEEEEe
Q psy6055 208 SGKGFVPK--FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPL--RNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 208 pg~~ygv~--FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~--~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
+++++ ||++. |.+|.-+ + ..+ .... +.. ..+...-..+.|||| +|+|++.+
T Consensus 99 ---~~~~~~~fp~l~--D~~~~va----~----~yG----v~~~-------~~~~~~~g~~~~~r~tfvID-dG~I~~~~ 153 (173)
T 3mng_A 99 ---AHKAEGKVRLLA--DPTGAFG----K----ETD----LLLD-------DSLVSIFGNRRLKRFSMVVQ-DGIVKALN 153 (173)
T ss_dssp ---HTTCTTTCEEEE--CTTCHHH----H----HHT----CBCC-------STTHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred ---HhCCCCceEEEE--CCChHHH----H----HhC----CCcc-------cccccccCCcceEEEEEEEE-CCEEEEEE
Confidence 77887 99994 4433221 1 111 1100 000 000112235889999 99999998
Q ss_pred cCCC----CcccHHHHHHH
Q psy6055 284 DASV----EPSELEPDIVE 298 (307)
Q Consensus 284 ~p~~----~P~eLe~dIek 298 (307)
.... +.++.++.|++
T Consensus 154 v~~~~~g~~~~~~~~vl~~ 172 (173)
T 3mng_A 154 VEPDGTGLTCSLAPNIISQ 172 (173)
T ss_dssp ECTTSSCSSTTSHHHHHHH
T ss_pred EeCCCCCcchHHHHHHHHh
Confidence 6643 23445555543
No 82
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=99.06 E-value=9.9e-11 Score=102.99 Aligned_cols=124 Identities=7% Similarity=-0.055 Sum_probs=80.6
Q ss_pred CCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecCCCC------
Q psy6055 147 GGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSGKGF------ 212 (307)
Q Consensus 147 ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg~~y------ 212 (307)
.+|+.++|++|+||++||+. +||++|..++|.|+.++ .+.+.+.+..+ +.++++ +|++ .+
T Consensus 44 ~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~---~~~~---~~~~~~g~ 117 (220)
T 1zye_A 44 GEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHL---AWIN---TPRKNGGL 117 (220)
T ss_dssp SSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH---HHHT---SCGGGTCC
T ss_pred CCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH---HHHH---HHHHhCCC
Confidence 36899999999999877554 79999999999887654 45555666542 334444 4663 44
Q ss_pred -CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC----
Q psy6055 213 -VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV---- 287 (307)
Q Consensus 213 -gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~---- 287 (307)
+++||++. |.+ ..+.+ ..+ ... +. ..+ --++.||||++|+|+.++.+..
T Consensus 118 ~~~~fp~l~--D~~----~~i~~----~yg----v~~---------~~--~g~-~~P~~~liD~~G~I~~~~~g~~~~~~ 171 (220)
T 1zye_A 118 GHMNIALLS--DLT----KQISR----DYG----VLL---------EG--PGL-ALRGLFIIDPNGVIKHLSVNDLPVGR 171 (220)
T ss_dssp CSCSSEEEE--CTT----SHHHH----HTT----CEE---------TT--TTE-ECEEEEEECTTSBEEEEEEECTTCCC
T ss_pred cCCceEEEE--CCc----HHHHH----HhC----Cee---------cC--CCc-ccceEEEECCCCEEEEEEecCCCCCC
Confidence 78999984 322 12222 211 000 00 000 2358999999999999986653
Q ss_pred CcccHHHHHHHHhhh
Q psy6055 288 EPSELEPDIVEELMK 302 (307)
Q Consensus 288 ~P~eLe~dIekLL~~ 302 (307)
+.++|.+.|++|+..
T Consensus 172 ~~~ell~~l~~l~~~ 186 (220)
T 1zye_A 172 SVEETLRLVKAFQFV 186 (220)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhhh
Confidence 346788888888754
No 83
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=99.05 E-value=7.7e-11 Score=100.64 Aligned_cols=129 Identities=9% Similarity=-0.043 Sum_probs=82.1
Q ss_pred CCCcccC-CC--CcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccC----CChhhhccccceeecC
Q psy6055 141 PENSGIG-GP--DRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLR----RYKGKVLLIVHFRVSG 209 (307)
Q Consensus 141 ~~~ft~l-dG--~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEp----gs~~EI~~~l~F~~pg 209 (307)
++++..+ +| +.++|++|+||++||+. +||++|..++|.|+.++ .+.+.+++.. .+.++++ +|++
T Consensus 13 ~f~l~~~~~g~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~---~~~~-- 87 (197)
T 1qmv_A 13 DFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHL---AWIN-- 87 (197)
T ss_dssp CCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH---HHHT--
T ss_pred CeEeEeecCCCccEEEHHHHCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH---HHHH--
Confidence 3444445 88 99999999999877444 79999999999887654 4555566653 2334455 4663
Q ss_pred CCC-------CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEE
Q psy6055 210 KGF-------VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 210 ~~y-------gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~R 282 (307)
.+ +++||++. |.+ ..+.+ ..+ .... + ..+ .-++.||||++|+|+.+
T Consensus 88 -~~~~~~~~~~~~~p~l~--D~~----~~~~~----~~g----v~~~--------~---~~~-~~P~~~lid~~G~i~~~ 140 (197)
T 1qmv_A 88 -TPRKEGGLGPLNIPLLA--DVT----RRLSE----DYG----VLKT--------D---EGI-AYRGLFIIDGKGVLRQI 140 (197)
T ss_dssp -SCGGGTCCCSCSSCEEE--CTT----CHHHH----HTT----CEET--------T---TTE-ECEEEEEECTTSBEEEE
T ss_pred -HHHhhCCCCCCceEEEE--CCc----HHHHH----HcC----CccC--------C---CCc-eeeEEEEECCCCcEEEE
Confidence 44 78999884 322 22222 111 1100 0 000 23588999999999999
Q ss_pred ecCCCC----cccHHHHHHHHhh
Q psy6055 283 YDASVE----PSELEPDIVEELM 301 (307)
Q Consensus 283 y~p~~~----P~eLe~dIekLL~ 301 (307)
+.+... .+++.+.|+++..
T Consensus 141 ~~g~~~~~~~~~e~l~~l~~l~~ 163 (197)
T 1qmv_A 141 TVNDLPVGRSVDEALRLVQAFQY 163 (197)
T ss_dssp EEECTTBCCCHHHHHHHHHHHHH
T ss_pred EeCCCCCCCCHHHHHHHHHhcch
Confidence 876543 4577777777754
No 84
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=99.01 E-value=6.5e-11 Score=106.33 Aligned_cols=119 Identities=9% Similarity=-0.026 Sum_probs=74.7
Q ss_pred CCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecCCCC-------C
Q psy6055 149 PDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSGKGF-------V 213 (307)
Q Consensus 149 G~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg~~y-------g 213 (307)
|++++|++|+||++||+- +||++|..++|.|+.++ .+.+.|++..+ +.++.+ +|++ .+ +
T Consensus 67 G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~---~~~~---~~~~~~~~~~ 140 (240)
T 3qpm_A 67 FKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHL---AWII---TPRKQGGLGP 140 (240)
T ss_dssp EEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH---HHHH---SCGGGTCCCS
T ss_pred CcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH---HHHH---HHHhhcCCCC
Confidence 569999999999777444 79999999999997654 56666777642 334444 4663 43 7
Q ss_pred ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcc---
Q psy6055 214 PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPS--- 290 (307)
Q Consensus 214 v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~--- 290 (307)
++||++. |.++ .+. +..+ .+.. . .. ...++.||||++|+|+.++.+.....
T Consensus 141 ~~fp~l~--D~~~----~v~----~~yg----v~~~----------~-~g-~~~p~~flID~~G~I~~~~~~~~~~~~~~ 194 (240)
T 3qpm_A 141 MKIPLLS--DLTH----QIS----KDYG----VYLE----------D-QG-HTLRGLFIIDEKGVLRQITMNDLPVGRSV 194 (240)
T ss_dssp CSSCEEE--CTTS----HHH----HHTT----CEET----------T-TT-EECEEEEEECTTSBEEEEEEECTTBCCCH
T ss_pred CceeEEe--CchH----HHH----HHhC----Cccc----------c-CC-CccceEEEEcCCCeEEEEEecCCCCCCCH
Confidence 8999984 3332 222 1111 1100 0 00 12358899999999999986644443
Q ss_pred -cHHHHHHHH
Q psy6055 291 -ELEPDIVEE 299 (307)
Q Consensus 291 -eLe~dIekL 299 (307)
++.+.|+++
T Consensus 195 ~eil~~l~~l 204 (240)
T 3qpm_A 195 DETLRLVQAF 204 (240)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 444444443
No 85
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=98.97 E-value=3.2e-11 Score=100.43 Aligned_cols=112 Identities=6% Similarity=-0.062 Sum_probs=72.5
Q ss_pred cCCC--CcccCCC-CCCCeEEEEc----CCCCCCc-Ccchhhhhhc-ccCCCCCc-cC----CChhhhccccceeecCCC
Q psy6055 146 IGGP--DRIDGSR-LRGPSHRSVG----TDHIVVP-SRLPSANVVD-PISGRGYK-LR----RYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 146 ~ldG--~~vdLS~-yKGKVvLVVN----S~Cg~c~-qe~p~L~llf-PcnQFG~Q-Ep----gs~~EI~~~l~F~~pg~~ 211 (307)
+.+| +.++|++ ++||++| || +||+.|. +++|.|+.++ .+.+.|.+ .. .+.++++ +|++ +
T Consensus 19 ~~~G~~~~~~l~~~~~gk~vv-l~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~---~~~~---~ 91 (162)
T 1tp9_A 19 DEQDQLQEVSVHSLVAGKKVI-LFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMK---AWAK---S 91 (162)
T ss_dssp CTTSCEEEEESHHHHTTSEEE-EEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHH---HHHH---T
T ss_pred cCCCCceeEeHHHHhCCCcEE-EEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHH---HHHH---h
Confidence 5789 9999999 9999765 66 7999999 9999997654 45566777 53 3345566 6884 7
Q ss_pred CCc--cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC
Q psy6055 212 FVP--KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 212 ygv--~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
+++ +||++. |-++ .+.+ ..+- ... . .+ ..-.+.--++.|||| +|+|++++.+.
T Consensus 92 ~~~~~~~~~l~--D~~~----~~~~----~~gv----~~~---~---~~-~g~~~~~~p~~~vid-~G~i~~~~~~~ 146 (162)
T 1tp9_A 92 YPENKHVKFLA--DGSA----TYTH----ALGL----ELD---L---QE-KGLGTRSRRFALLVD-DLKVKAANIEG 146 (162)
T ss_dssp CTTCSSEEEEE--CTTS----HHHH----HTTC----EEE---E---TT-TTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred cCCCCCeEEEE--CCCc----hHHH----HcCc----ccc---c---cc-CCCCccceeEEEEEE-CCEEEEEEeeC
Confidence 888 899984 3222 2222 1110 000 0 00 000001135889999 99999999765
No 86
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=98.94 E-value=2.1e-10 Score=101.71 Aligned_cols=140 Identities=10% Similarity=-0.129 Sum_probs=86.2
Q ss_pred CCCCcccC--CCCcccCCCCCCC-eEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----Chhhhccccceee-
Q psy6055 140 SPENSGIG--GPDRIDGSRLRGP-SHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRV- 207 (307)
Q Consensus 140 ~~~~ft~l--dG~~vdLS~yKGK-VvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~- 207 (307)
.++++.+. +| .++|++|+|| ++|+++ +||+.|..+++.|+.++ .+.+.|.+..+ +.+..+ +|++
T Consensus 10 P~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~---~~~~~ 85 (220)
T 1xcc_A 10 PNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHD---KWIED 85 (220)
T ss_dssp CCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHH---HHHHH
T ss_pred CCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHH---HHHHH
Confidence 34455567 88 9999999999 566677 89999999999987655 46666777643 222222 2331
Q ss_pred --cC-CCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 208 --SG-KGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 208 --pg-~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
.- .+++++||++. |.++ .+.+-+. .+... .....+-..+.++.||||++|+|+.++.
T Consensus 86 i~~~~~~~~~~fpil~--D~~~----~va~~yg--------v~~~~------~~~~~g~~~~~p~~flID~~G~I~~~~~ 145 (220)
T 1xcc_A 86 IKYYGKLNKWEIPIVC--DESR----ELANKLK--------IMDEQ------EKDITGLPLTCRCLFFISPEKKIKATVL 145 (220)
T ss_dssp HHHHHTCSCCCCCEEE--CTTS----HHHHHHT--------CEEEE------EECTTSCEEECEEEEEECTTSBEEEEEE
T ss_pred HHHHhcCCCCcceeEE--Cchh----HHHHHhC--------CCCcc------cccCCCCCcccceEEEECCCCEEEEEEe
Confidence 00 15889999984 3332 2222111 11000 0000001234679999999999999985
Q ss_pred CC----CCcccHHHHHHHHhhhh
Q psy6055 285 AS----VEPSELEPDIVEELMKR 303 (307)
Q Consensus 285 p~----~~P~eLe~dIekLL~~~ 303 (307)
.. .+.++|.+.|++|....
T Consensus 146 ~~~~~g~~~~ell~~i~~lq~~~ 168 (220)
T 1xcc_A 146 YPATTGRNAHEILRVLKSLQLTY 168 (220)
T ss_dssp ECTTBCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhhh
Confidence 32 35678888998887544
No 87
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=98.93 E-value=4.1e-11 Score=103.99 Aligned_cols=131 Identities=11% Similarity=-0.036 Sum_probs=81.4
Q ss_pred CCCCcccC--CC-CcccCCC-CCCCeEEEEc---CCCCCCcC-cchhhhhhc-ccCCCCCc-cC----CChhhhccccce
Q psy6055 140 SPENSGIG--GP-DRIDGSR-LRGPSHRSVG---TDHIVVPS-RLPSANVVD-PISGRGYK-LR----RYKGKVLLIVHF 205 (307)
Q Consensus 140 ~~~~ft~l--dG-~~vdLS~-yKGKVvLVVN---S~Cg~c~q-e~p~L~llf-PcnQFG~Q-Ep----gs~~EI~~~l~F 205 (307)
+++++..+ +| ++++|++ |+||+++|++ +||++|.. |+|.|+.++ .+.+.|.+ +. .+.+..+ +|
T Consensus 33 Pdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~---~f 109 (184)
T 3uma_A 33 PNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMG---AW 109 (184)
T ss_dssp CCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHH---HH
T ss_pred CCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHH---HH
Confidence 33444556 89 9999999 8999777777 89999999 799997654 57777887 54 2334555 68
Q ss_pred eecCCCCCcc--ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEe
Q psy6055 206 RVSGKGFVPK--FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARY 283 (307)
Q Consensus 206 ~~pg~~ygv~--FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry 283 (307)
++ +++++ ||++. |-+|. +.+..+ ....+ ...+. .+.=..+.|||| +|+|++.+
T Consensus 110 ~~---~~~~~~~fp~l~--D~~~~--------va~~yG----v~~~~-~~~g~------g~~~~r~tfiId-dG~I~~~~ 164 (184)
T 3uma_A 110 AT---HSGGMGKIHFLS--DWNAA--------FTKAIG----MEIDL-SAGTL------GIRSKRYSMLVE-DGVVKALN 164 (184)
T ss_dssp HH---HHTCTTTSEEEE--CTTCH--------HHHHTT----CEEEE-GGGTC------EEEECCEEEEEE-TTEEEEEE
T ss_pred HH---HhCCCCceEEEE--cCchH--------HHHHcC----Cceec-cccCC------cccceeEEEEEC-CCEEEEEE
Confidence 84 78888 99994 43332 122221 11000 00000 011124689996 99999999
Q ss_pred cCCC----CcccHHHHHHH
Q psy6055 284 DASV----EPSELEPDIVE 298 (307)
Q Consensus 284 ~p~~----~P~eLe~dIek 298 (307)
.... +..++++.+++
T Consensus 165 ~~~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 165 IEESPGQATASGAAAMLEL 183 (184)
T ss_dssp ECSSTTCCSTTSHHHHHHH
T ss_pred EeCCCCCCcCCCHHHHHhh
Confidence 6543 23345544443
No 88
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=98.91 E-value=5.5e-11 Score=100.86 Aligned_cols=119 Identities=11% Similarity=0.046 Sum_probs=76.1
Q ss_pred CCCCcc-cCCCCcccCCCC-CCCeEEEEc---CCCCCCcC-cchhhhhhc-ccCCCCC-ccC----CChhhhccccceee
Q psy6055 140 SPENSG-IGGPDRIDGSRL-RGPSHRSVG---TDHIVVPS-RLPSANVVD-PISGRGY-KLR----RYKGKVLLIVHFRV 207 (307)
Q Consensus 140 ~~~~ft-~ldG~~vdLS~y-KGKVvLVVN---S~Cg~c~q-e~p~L~llf-PcnQFG~-QEp----gs~~EI~~~l~F~~ 207 (307)
+++++. ..+|+.++|++| +||++||+. +||++|.. ++|.|+.++ .+.+.|. ++. .+.++++ +|++
T Consensus 10 P~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~---~~~~ 86 (167)
T 2wfc_A 10 PAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMD---AWGK 86 (167)
T ss_dssp CCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHH---HHHH
T ss_pred CCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHH---HHHH
Confidence 445566 789999999999 999877555 89999998 999987654 4666677 654 3345566 6884
Q ss_pred cCCCCCcc--ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 208 SGKGFVPK--FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 208 pg~~ygv~--FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
+++++ ||++. |.++. +. +..+ .... . .+.. +...-.++.||| ++|+|++++..
T Consensus 87 ---~~~~~~~fp~l~--D~~~~----~~----~~~g----v~~~---~---~~~~-g~~~~~p~t~lI-~~G~I~~~~~~ 141 (167)
T 2wfc_A 87 ---AHGADDKVQMLA--DPGGA----FT----KAVD----MELD---L---SAVL-GNVRSKRYSLVI-EDGVVTKVNVE 141 (167)
T ss_dssp ---HTTCTTTSEEEE--CTTSH----HH----HHTT----CEEC---C---HHHH-SSCEECCEEEEE-ETTEEEEEEEC
T ss_pred ---hcCCCcceEEEE--CCCCc----HH----HHcC----Cccc---c---cccc-CcccceEEEEEE-eCCEEEEEEec
Confidence 78888 99984 43322 11 1111 0000 0 0000 001122688999 99999999865
Q ss_pred C
Q psy6055 286 S 286 (307)
Q Consensus 286 ~ 286 (307)
.
T Consensus 142 ~ 142 (167)
T 2wfc_A 142 P 142 (167)
T ss_dssp T
T ss_pred C
Confidence 3
No 89
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=98.90 E-value=2.5e-10 Score=101.57 Aligned_cols=139 Identities=12% Similarity=-0.029 Sum_probs=85.3
Q ss_pred CCCCcccCCCCcccCCCCCCC-eEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----Chhhhccccceeec--
Q psy6055 140 SPENSGIGGPDRIDGSRLRGP-SHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVS-- 208 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGK-VvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~p-- 208 (307)
.++++.+.+| .++|++|+|| ++|+++ +||+.|..+++.|+.++ .+.+.|.+..+ +.+..+ +|++-
T Consensus 12 P~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~---~~~~~i~ 87 (224)
T 1prx_A 12 PNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHL---AWSKDIN 87 (224)
T ss_dssp CCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHH---HHHHHHH
T ss_pred CCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH---HHHHHHH
Confidence 3345556889 9999999998 556577 89999999999987655 46666776543 222333 34420
Q ss_pred -CCC----CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCC-CcccceEEEECCCCcEEEE
Q psy6055 209 -GKG----FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSD-VREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 209 -g~~----ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~-IkWNFTKFLIDrdG~VV~R 282 (307)
..+ ++++||++. |.++. +.+ ..+ .... +...... ...-.+.||||++|+|+.+
T Consensus 88 ~~~~~~~~~~~~fpil~--D~~~~----va~----~yg----v~~~-------~~~~~~g~~~~~p~~fiID~~G~I~~~ 146 (224)
T 1prx_A 88 AYNSEEPTEKLPFPIID--DRNRE----LAI----LLG----MLDP-------AEKDEKGMPVTARVVFVFGPDKKLKLS 146 (224)
T ss_dssp HHTTSCCCSCCSSCEEE--CTTCH----HHH----HTT----SSCS-------CTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred HhhCcccccCcCcceee--cCchH----HHH----HhC----CCCc-------ccccCCCccccceEEEEECCCCEEEEE
Confidence 002 789999984 33222 221 111 1100 0000000 1123589999999999999
Q ss_pred ecCCC----CcccHHHHHHHHhhhh
Q psy6055 283 YDASV----EPSELEPDIVEELMKR 303 (307)
Q Consensus 283 y~p~~----~P~eLe~dIekLL~~~ 303 (307)
+.... +.++|.+.|++|+...
T Consensus 147 ~~~~~~~gr~~~eil~~i~~l~~~~ 171 (224)
T 1prx_A 147 ILYPATTGRNFDEILRVVISLQLTA 171 (224)
T ss_dssp EECCTTBCCCHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHHHhhc
Confidence 86432 5678888998887643
No 90
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=98.42 E-value=1.6e-10 Score=91.38 Aligned_cols=110 Identities=5% Similarity=-0.042 Sum_probs=70.4
Q ss_pred CCcccCCCCcccCCC-CCCC-eEEEEc--CCCCCCcCcchhhhhhc-ccCC--CCCccC-----CChhhhccccceeecC
Q psy6055 142 ENSGIGGPDRIDGSR-LRGP-SHRSVG--TDHIVVPSRLPSANVVD-PISG--RGYKLR-----RYKGKVLLIVHFRVSG 209 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~-yKGK-VvLVVN--S~Cg~c~qe~p~L~llf-PcnQ--FG~QEp-----gs~~EI~~~l~F~~pg 209 (307)
+++++++|+.++|++ ++|| ++||.- +||++|..++|.|+.++ .+++ .+++.. .+.++++ +|+.
T Consensus 7 ~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~---~~~~-- 81 (143)
T 2lus_A 7 IKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMF---QYMM-- 81 (143)
Confidence 455568999999999 9999 766433 89999999999887554 3421 233332 1234566 6884
Q ss_pred CCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCC
Q psy6055 210 KGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDAS 286 (307)
Q Consensus 210 ~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~ 286 (307)
.++++|+.+.-.. +..+.+. + .| .|..-++.||||++|+++.++...
T Consensus 82 -~~~~~~~~~~~~~---~~~~~~~----~-------~~---------------~v~~~P~~~lid~~G~i~~~~~~~ 128 (143)
T 2lus_A 82 -ESHGDWLAIPYRS---GPASNVT----A-------KY---------------GITGIPALVIVKKDGTLISMNGRG 128 (143)
Confidence 7888887652111 0101111 1 12 234446889999999999997554
No 91
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=98.87 E-value=2.1e-10 Score=97.26 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=50.0
Q ss_pred CcccCCCC-CCCeEEEEc---CCCCCCcCc-chhhhhhc-ccCCCCCc-cC----CChhhhccccceeecCCCCCc--cc
Q psy6055 150 DRIDGSRL-RGPSHRSVG---TDHIVVPSR-LPSANVVD-PISGRGYK-LR----RYKGKVLLIVHFRVSGKGFVP--KF 216 (307)
Q Consensus 150 ~~vdLS~y-KGKVvLVVN---S~Cg~c~qe-~p~L~llf-PcnQFG~Q-Ep----gs~~EI~~~l~F~~pg~~ygv--~F 216 (307)
+.++|++| +||.++|+| +||++|..| +|.|+.++ .+.+.|.+ .. .+.++++ +|++ ++++ +|
T Consensus 33 ~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~---~~~~---~~~~~~~f 106 (171)
T 2pwj_A 33 STTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVN---AWAE---KIQAKDAI 106 (171)
T ss_dssp CCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHH---HHHH---HTTCTTTS
T ss_pred ceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHH---HHHH---HhCCCCce
Confidence 99999996 998777788 899999998 99997655 46667777 53 2344555 6884 6775 79
Q ss_pred eeec
Q psy6055 217 DVFG 220 (307)
Q Consensus 217 PVf~ 220 (307)
|++.
T Consensus 107 p~l~ 110 (171)
T 2pwj_A 107 EFYG 110 (171)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9983
No 92
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=98.87 E-value=2.3e-09 Score=97.13 Aligned_cols=128 Identities=7% Similarity=-0.143 Sum_probs=81.2
Q ss_pred CCCcccCCCCcccCCCCCCCeEEEEc---CC-CCCCc-----CcchhhhhhcccCCCCCccC----CChhhhccccceee
Q psy6055 141 PENSGIGGPDRIDGSRLRGPSHRSVG---TD-HIVVP-----SRLPSANVVDPISGRGYKLR----RYKGKVLLIVHFRV 207 (307)
Q Consensus 141 ~~~ft~ldG~~vdLS~yKGKVvLVVN---S~-Cg~c~-----qe~p~L~llfPcnQFG~QEp----gs~~EI~~~l~F~~ 207 (307)
++++...+|+.++|++|+||++| || +| |+.|. .+++.|+.+| .|.++. .+.+..+ +|+.
T Consensus 30 dFtL~d~~G~~vsLsd~~Gk~vV-L~F~ps~~cp~C~~~~~~~El~~~~~~~----~gv~VvgIS~Ds~~~~~---~f~~ 101 (224)
T 3keb_A 30 SFMLVDDQKHDAALESFSHTPKL-IVTLLSVDEDEHAGLLLLRETRRFLDSW----PHLKLIVITVDSPSSLA---RARH 101 (224)
T ss_dssp CCEEEETTSCEEEGGGGTTCCEE-EEECSCTTCSTTTSHHHHHHHHHHHTTC----TTSEEEEEESSCHHHHH---HHHH
T ss_pred CeEEECCCCCEEeHHHhCCCcEE-EEEEeCCCCCCCCCCccHHHHHHHHHHc----CCCEEEEEECCCHHHHH---HHHH
Confidence 34444579999999999999766 56 66 99999 8888887663 456654 3344555 6884
Q ss_pred cCCCCCc-cceeecccCC-CCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC
Q psy6055 208 SGKGFVP-KFDVFGPGPV-NGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA 285 (307)
Q Consensus 208 pg~~ygv-~FPVf~KvdV-NG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p 285 (307)
.+++ +||++. |. ++.- .+..+ .+.. -.+.. . .-..+.||||++|+|++++..
T Consensus 102 ---~~gl~~fplLs--D~~~~~v--------ak~yG----v~~~------~~~~~--G-~~~p~tfvID~dG~I~~~~~~ 155 (224)
T 3keb_A 102 ---EHGLPNIALLS--TLRGRDF--------HKRYG----VLIT------EYPLS--G-YTSPAIILADAANVVHYSERL 155 (224)
T ss_dssp ---HHCCTTCEEEE--STTCTTH--------HHHTT----CBCC------STTST--T-CBCCEEEEECTTCBEEEEEEC
T ss_pred ---HcCCCCceEEE--cCCchHH--------HHHhC----Cccc------ccccc--C-CccCEEEEEcCCCEEEEEEec
Confidence 7888 799994 43 2221 11111 1100 00000 0 013588999999999988742
Q ss_pred -----CCCcccHHHHHHHHhhh
Q psy6055 286 -----SVEPSELEPDIVEELMK 302 (307)
Q Consensus 286 -----~~~P~eLe~dIekLL~~ 302 (307)
..+.+++.+.|+++..+
T Consensus 156 ~~~~~~pd~~evl~~L~~l~~~ 177 (224)
T 3keb_A 156 ANTRDFFDFDAIEKLLQEGEQQ 177 (224)
T ss_dssp SBTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhhhc
Confidence 34456777788777653
No 93
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=98.85 E-value=4.7e-10 Score=105.46 Aligned_cols=123 Identities=8% Similarity=-0.012 Sum_probs=81.0
Q ss_pred CCCCcccCCCCcccCCCCCCCeEEEEc----CCCCCCcCcchhhhhhcccCCCCCccCC----ChhhhccccceeecCCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGPSHRSVG----TDHIVVPSRLPSANVVDPISGRGYKLRR----YKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGKVvLVVN----S~Cg~c~qe~p~L~llfPcnQFG~QEpg----s~~EI~~~l~F~~pg~~ 211 (307)
.++++.+.||++++|++|+||++| +| .+|+.|..|++.++.. +..+.++.+ +.+..+ +|+. +
T Consensus 5 p~F~l~~~~G~~~~Lsd~~Gk~vv-l~F~p~~~tp~C~~e~~~~~~~---~~~~~~v~gis~D~~~~~~---~f~~---~ 74 (322)
T 4eo3_A 5 KHFELLTDEGKTFTHVDLYGKYTI-LFFFPKAGTSGSTREAVEFSRE---NFEKAQVVGISRDSVEALK---RFKE---K 74 (322)
T ss_dssp CCCEEEETTSCEEEGGGTTTSEEE-EEECSSTTSHHHHHHHHHHHHS---CCTTEEEEEEESCCHHHHH---HHHH---H
T ss_pred CCcEEECCCcCEEeHHHhCCCeEE-EEEECCCCCCCCHHHHHHHHHH---hhCCCEEEEEeCCCHHHHH---HHHH---h
Confidence 455566789999999999999765 67 4788898888776532 122455543 344455 6984 8
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCc--
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEP-- 289 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P-- 289 (307)
++++|||+. |.+|.-+ +..+ .++ ...--.++||||++|+|++.|.+ +++
T Consensus 75 ~~l~fp~l~--D~~~~v~--------~~yg----v~~--------------~~~~~r~tfiId~~G~i~~~~~~-v~~~~ 125 (322)
T 4eo3_A 75 NDLKVTLLS--DPEGILH--------EFFN----VLE--------------NGKTVRSTFLIDRWGFVRKEWRR-VKVEG 125 (322)
T ss_dssp HTCCSEEEE--CTTCHHH--------HHTT----CEE--------------TTEECCEEEEECTTSBEEEEEES-CCSTT
T ss_pred hCCceEEEE--cCchHHH--------HhcC----CCC--------------CCcCccEEEEECCCCEEEEEEeC-CCccc
Confidence 999999994 4433221 1111 111 01122488999999999998864 444
Q ss_pred --ccHHHHHHHHhh
Q psy6055 290 --SELEPDIVEELM 301 (307)
Q Consensus 290 --~eLe~dIekLL~ 301 (307)
+++.+.|++++.
T Consensus 126 h~~~~l~~~~~~~~ 139 (322)
T 4eo3_A 126 HVQEVKEALDRLIE 139 (322)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhch
Confidence 467777777764
No 94
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=98.78 E-value=3.5e-10 Score=101.87 Aligned_cols=137 Identities=10% Similarity=-0.025 Sum_probs=83.7
Q ss_pred CCCCcccCCCCcccCCCCCCC-eEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----ChhhhccccceeecCC
Q psy6055 140 SPENSGIGGPDRIDGSRLRGP-SHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRVSGK 210 (307)
Q Consensus 140 ~~~~ft~ldG~~vdLS~yKGK-VvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~pg~ 210 (307)
.++++.+.+| .++|++|+|| ++||+- +||+.|..+++.|+.++ .+.+.|.+..+ +.+..+ +|++ .
T Consensus 10 PdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~---~~~~--~ 83 (233)
T 2v2g_A 10 PNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHK---EWSE--D 83 (233)
T ss_dssp CCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH---HHHH--H
T ss_pred CCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHH---HHHH--H
Confidence 3455556899 9999999999 555333 79999999999987654 45566777643 223344 4652 1
Q ss_pred -----CC--CccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCC-CcccceEEEECCCCcEEEE
Q psy6055 211 -----GF--VPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSD-VREPYEKFLVGARGYPVAR 282 (307)
Q Consensus 211 -----~y--gv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~-IkWNFTKFLIDrdG~VV~R 282 (307)
++ +++||++. |.++. +.+ ..+ .... +...... ..--.+.||||++|+|+.+
T Consensus 84 i~~~~~~~~~~~fpil~--D~~~~----va~----~yg----v~~~-------~~~~~~g~~~~~p~~fiID~~G~I~~~ 142 (233)
T 2v2g_A 84 VKCLSGVKGDMPYPIIA--DETRE----LAV----KLG----MVDP-------DERTSTGMPLTCRAVFIIGPDKKLKLS 142 (233)
T ss_dssp HHHHHTCCSSCSSCEEE--CTTCH----HHH----HTT----CEEE-------EEECTTCCEEECEEEEEECTTSBEEEE
T ss_pred HHHhhCcccCCceEEEE--CChHH----HHH----HhC----CcCc-------ccccCCCcccccceEEEECCCCEEEEE
Confidence 56 88999984 33322 221 111 1100 0000000 0112488999999999999
Q ss_pred ecCCC----CcccHHHHHHHHhhhh
Q psy6055 283 YDASV----EPSELEPDIVEELMKR 303 (307)
Q Consensus 283 y~p~~----~P~eLe~dIekLL~~~ 303 (307)
+.... +.++|.+.|++|....
T Consensus 143 ~~~~~~~gr~~~eilr~l~~Lq~~~ 167 (233)
T 2v2g_A 143 ILYPATTGRNFSEILRVIDSLQLTA 167 (233)
T ss_dssp EEECTTBCCCHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCCHHHHHHHHHHHHhhc
Confidence 84322 4567888888876543
No 95
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=98.75 E-value=1.5e-09 Score=99.31 Aligned_cols=133 Identities=13% Similarity=0.002 Sum_probs=83.7
Q ss_pred CCcccCCCCcccC-CCC--CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCC----Chhhhccccceee---
Q psy6055 142 ENSGIGGPDRIDG-SRL--RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRR----YKGKVLLIVHFRV--- 207 (307)
Q Consensus 142 ~~ft~ldG~~vdL-S~y--KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpg----s~~EI~~~l~F~~--- 207 (307)
+++...+| +++| ++| +||++++++ +||+.|..+++.|+.++ .+.+.|.+..+ +....+ +|+.
T Consensus 14 F~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~---~w~~~~~ 89 (249)
T 3a2v_A 14 MEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHI---KWKEWIE 89 (249)
T ss_dssp EEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHH---HHHHHHH
T ss_pred eEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHH---HHHHHHH
Confidence 44445788 7999 999 999877788 89999999999887654 45555666542 222222 2221
Q ss_pred cCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCC
Q psy6055 208 SGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASV 287 (307)
Q Consensus 208 pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~ 287 (307)
...+.+++|||+. |.++ .+.+-+.-... ...+.--++.||||++|+|+.++.+..
T Consensus 90 ~~~~~~i~fPil~--D~~~----~ia~~ygv~~~-------------------~~g~~~~p~~fIID~dG~I~~~~~~~~ 144 (249)
T 3a2v_A 90 RHIGVRIPFPIIA--DPQG----TVARRLGLLHA-------------------ESATHTVRGVFIVDARGVIRTMLYYPM 144 (249)
T ss_dssp HHTCCCCCSCEEE--CTTS----HHHHHHTCCCT-------------------TCSSSCCEEEEEECTTSBEEEEEEECT
T ss_pred HhcCCCCceeEEE--CCch----HHHHHhCCccc-------------------cCCCcccceEEEECCCCeEEEEEecCC
Confidence 0013588999984 3222 22221111000 001223358899999999999986543
Q ss_pred ----CcccHHHHHHHHhhhh
Q psy6055 288 ----EPSELEPDIVEELMKR 303 (307)
Q Consensus 288 ----~P~eLe~dIekLL~~~ 303 (307)
+.++|.+.|++|+...
T Consensus 145 ~~gr~~~Ellr~I~alq~~~ 164 (249)
T 3a2v_A 145 ELGRLVDEILRIVKALKLGD 164 (249)
T ss_dssp TBCCCHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHhcc
Confidence 5678889998887543
No 96
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=98.69 E-value=1.1e-09 Score=96.33 Aligned_cols=119 Identities=13% Similarity=-0.003 Sum_probs=74.5
Q ss_pred CCCcccC-CCC--cccCCC-CCCCeEEEEc----CCCCCCc-Ccchhhhhhc-ccCCCCC-ccCC----Chhhhccccce
Q psy6055 141 PENSGIG-GPD--RIDGSR-LRGPSHRSVG----TDHIVVP-SRLPSANVVD-PISGRGY-KLRR----YKGKVLLIVHF 205 (307)
Q Consensus 141 ~~~ft~l-dG~--~vdLS~-yKGKVvLVVN----S~Cg~c~-qe~p~L~llf-PcnQFG~-QEpg----s~~EI~~~l~F 205 (307)
++++.++ +|+ .++|++ |+||++| || +||++|. .++|.|+.++ .+.+.|. +..+ +.+.++ +|
T Consensus 11 ~f~l~~~~~g~~~~v~l~~~~~gk~vv-l~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~---~~ 86 (241)
T 1nm3_A 11 QVTFRTRQGDKWVDVTTSELFDNKTVI-VFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMN---AW 86 (241)
T ss_dssp CCEEEEEETTEEEEEEHHHHHTTSEEE-EEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHH---HH
T ss_pred CeEEEcccCCCceeecHHHHhCCCeEE-EEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHH---HH
Confidence 3444455 677 999999 9999866 55 8999999 9999997654 4666677 6543 334455 68
Q ss_pred eecCCCCCcc-ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec
Q psy6055 206 RVSGKGFVPK-FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD 284 (307)
Q Consensus 206 ~~pg~~ygv~-FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~ 284 (307)
++ ++++. ||++. |.+|. +.+ ..+ .... .....-...-.++.||| ++|+|++++.
T Consensus 87 ~~---~~~~~~~~~l~--D~~~~----~~~----~~g----v~~~-------~~~~g~~~~~~p~t~li-~~G~i~~~~~ 141 (241)
T 1nm3_A 87 KE---DEKSENISFIP--DGNGE----FTE----GMG----MLVG-------KEDLGFGKRSWRYSMLV-KNGVVEKMFI 141 (241)
T ss_dssp HH---HTTCTTSEEEE--CTTSH----HHH----HTT----CEEE-------CTTTTCCEEECCEEEEE-ETTEEEEEEE
T ss_pred HH---hcCCCceEEEE--CCCcH----HHH----HhC----ceee-------cccccCcccceeEEEEE-ECCEEEEEEE
Confidence 84 78886 99984 43322 111 111 0000 00000001122588999 9999999997
Q ss_pred CCCC
Q psy6055 285 ASVE 288 (307)
Q Consensus 285 p~~~ 288 (307)
+...
T Consensus 142 ~~~~ 145 (241)
T 1nm3_A 142 EPNE 145 (241)
T ss_dssp CCSC
T ss_pred eccC
Confidence 6543
No 97
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=98.55 E-value=1.6e-08 Score=80.79 Aligned_cols=106 Identities=10% Similarity=-0.020 Sum_probs=67.8
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCC-CCCccC-----CChhhhccccceeecCCCC
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISG-RGYKLR-----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQ-FG~QEp-----gs~~EI~~~l~F~~pg~~y 212 (307)
+++..++|+.++|++++||++||.- +||++|.+++|.|+.++ .+.+ .+++.. .+.++++ +|+. ++
T Consensus 11 f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~---~~~~---~~ 84 (144)
T 1i5g_A 11 TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK---DYYA---KM 84 (144)
T ss_dssp SEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH---HHHT---TC
T ss_pred eEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH---HHHH---hC
Confidence 4555689999999999999877444 89999999999887554 3442 234432 2345566 5774 45
Q ss_pred C-ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEEC-CCCcEEEEec
Q psy6055 213 V-PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVG-ARGYPVARYD 284 (307)
Q Consensus 213 g-v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLID-rdG~VV~Ry~ 284 (307)
+ ..||+.. .+.. .-|.+.. .|..-++.|||| ++|+++.++.
T Consensus 85 ~~~~~~~~~-----~d~~----~~~~~~~----------------------~v~~~P~~~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 85 PWLALPFED-----RKGM----EFLTTGF----------------------DVKSIPTLVGVEADSGNIITTQA 127 (144)
T ss_dssp SSEECCTTC-----HHHH----HHHHHHT----------------------TCCSSSEEEEEETTTCCEEESCH
T ss_pred CccccccCc-----hHHH----HHHHHHc----------------------CCCCCCEEEEEECCCCcEEeccc
Confidence 4 3555441 0000 1122222 233446999999 9999999863
No 98
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=98.48 E-value=2.5e-08 Score=79.22 Aligned_cols=104 Identities=8% Similarity=-0.065 Sum_probs=65.2
Q ss_pred CcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccC-CCCCccC-----CChhhhccccceeecCCCCC
Q psy6055 143 NSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PIS-GRGYKLR-----RYKGKVLLIVHFRVSGKGFV 213 (307)
Q Consensus 143 ~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-Pcn-QFG~QEp-----gs~~EI~~~l~F~~pg~~yg 213 (307)
.+..++| .++|++++||++||.- +||++|.+++|.|+.++ .+. +.+++.. .+.++++ +|+. +++
T Consensus 13 ~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~---~~~~---~~~ 85 (144)
T 1o73_A 13 NLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFH---DYYG---KMP 85 (144)
T ss_dssp CBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHH---HHHT---TCS
T ss_pred EeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHH---HHHH---hCC
Confidence 5667899 9999999999877444 89999999999887554 343 2234332 2334566 5774 443
Q ss_pred -ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEEC-CCCcEEEEec
Q psy6055 214 -PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVG-ARGYPVARYD 284 (307)
Q Consensus 214 -v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLID-rdG~VV~Ry~ 284 (307)
..||+.. .+.. .-|.+.. .|..-++.|||| ++|+++.++.
T Consensus 86 ~~~~~~~~-----~~~~----~~~~~~~----------------------~v~~~Pt~~lid~~~G~i~~~~~ 127 (144)
T 1o73_A 86 WLALPFDQ-----RSTV----SELGKTF----------------------GVESIPTLITINADTGAIIGTQA 127 (144)
T ss_dssp SEECCTTC-----HHHH----HHHHHHH----------------------TCCSSSEEEEEETTTCCEEESCH
T ss_pred ceEeeccc-----hhHH----HHHHHHc----------------------CCCCCCEEEEEECCCCeEEecch
Confidence 3444431 0001 1122211 234456999999 9999999874
No 99
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=98.45 E-value=3.9e-08 Score=81.92 Aligned_cols=104 Identities=9% Similarity=-0.058 Sum_probs=66.6
Q ss_pred CcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCC-CCCccC-----CChhhhccccceeecCCCCC
Q psy6055 143 NSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISG-RGYKLR-----RYKGKVLLIVHFRVSGKGFV 213 (307)
Q Consensus 143 ~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQ-FG~QEp-----gs~~EI~~~l~F~~pg~~yg 213 (307)
.+++++| .++|++++||++||.- +||++|.+++|.|+.++ .+.+ .+++.. .+.++++ +|+. +++
T Consensus 33 ~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~---~~~~---~~~ 105 (165)
T 3s9f_A 33 KLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFN---AYYA---KMP 105 (165)
T ss_dssp CEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHH---HHHT---TCS
T ss_pred eeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHH---HHHH---hCC
Confidence 4566899 9999999999877433 99999999999987654 4443 344432 2345566 5774 443
Q ss_pred -ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCC-CcEEEEec
Q psy6055 214 -PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGAR-GYPVARYD 284 (307)
Q Consensus 214 -v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrd-G~VV~Ry~ 284 (307)
..||+.. ... -.-+.+.. .|..-++.||||++ |+|+.+..
T Consensus 106 ~~~~~~~~------~~~---~~~l~~~~----------------------~v~~~Pt~~lid~~~G~iv~~~~ 147 (165)
T 3s9f_A 106 WLSIPFAN------RNI---VEALTKKY----------------------SVESIPTLIGLNADTGDTVTTRA 147 (165)
T ss_dssp SEECCTTC------HHH---HHHHHHHT----------------------TCCSSSEEEEEETTTCCEEESCH
T ss_pred CcccccCc------hhH---HHHHHHHc----------------------CCCCCCEEEEEeCCCCEEEeccc
Confidence 3444431 000 01222222 24455799999998 99999854
No 100
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=98.40 E-value=6.4e-08 Score=77.58 Aligned_cols=106 Identities=9% Similarity=-0.040 Sum_probs=67.0
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCC-CCCccC-----CChhhhccccceeecCCCC
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISG-RGYKLR-----RYKGKVLLIVHFRVSGKGF 212 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQ-FG~QEp-----gs~~EI~~~l~F~~pg~~y 212 (307)
+.+.+++| .++|++++||++||.- +||++|.+++|.|+.++ .+.+ .+++.. .+.++++ +|++ ++
T Consensus 12 f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~---~~~~---~~ 84 (146)
T 1o8x_A 12 EKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFA---GYFA---KM 84 (146)
T ss_dssp CEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHH---HHHT---TC
T ss_pred eEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHH---HHHH---HC
Confidence 34556899 9999999999877444 89999999999887554 3442 234432 2345566 5774 44
Q ss_pred C-ccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEEC-CCCcEEEEecC
Q psy6055 213 V-PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVG-ARGYPVARYDA 285 (307)
Q Consensus 213 g-v~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLID-rdG~VV~Ry~p 285 (307)
+ ..||+.. .+ . -.-|.+.. .|..-++.|||| ++|+++.++..
T Consensus 85 ~~~~~~~~~-~d----~----~~~~~~~~----------------------~v~~~Pt~~lid~~~G~i~~~~~~ 128 (146)
T 1o8x_A 85 PWLAVPFAQ-SE----A----VQKLSKHF----------------------NVESIPTLIGVDADSGDVVTTRAR 128 (146)
T ss_dssp SSEECCGGG-HH----H----HHHHHHHT----------------------TCCSSSEEEEEETTTCCEEESCHH
T ss_pred Cceeeccch-hh----H----HHHHHHHh----------------------CCCCCCEEEEEECCCCeEEEecch
Confidence 4 3566541 00 0 01122222 133346999999 99999998743
No 101
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=98.38 E-value=9.7e-08 Score=86.39 Aligned_cols=126 Identities=11% Similarity=0.004 Sum_probs=74.2
Q ss_pred CCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCC---hhhhccccceee----cCCCCCcc
Q psy6055 147 GGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRY---KGKVLLIVHFRV----SGKGFVPK 215 (307)
Q Consensus 147 ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs---~~EI~~~l~F~~----pg~~ygv~ 215 (307)
-+|++|+|++|+||++|+.- .+|+.|..|+..++.++ .+.+.|.++.+- +.+-.. +|+. .+..++++
T Consensus 44 ~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~--~w~~~~~~~~~~~~l~ 121 (219)
T 3tue_A 44 GSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHL--QWTLQDRKKGGLGTMA 121 (219)
T ss_dssp SCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHH--HHHHSCGGGTCCCSCS
T ss_pred CCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHH--HHhhhhHHhcCccccc
Confidence 46789999999999766444 68999999998887554 577778777542 211111 3432 01135789
Q ss_pred ceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEec--CCC--Cccc
Q psy6055 216 FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYD--ASV--EPSE 291 (307)
Q Consensus 216 FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~--p~~--~P~e 291 (307)
||++. |.++.- .+..+ .+.. .. .+.. =..||||++|+|...+. -.+ +.++
T Consensus 122 fplls--D~~~~v--------a~~yG----v~~~---------~~--g~~~-R~tFiIDp~g~Ir~~~~~~~~~gr~~~E 175 (219)
T 3tue_A 122 IPILA--DKTKNI--------ARSYG----VLEE---------SQ--GVAY-RGLFIIDPHGMLRQITVNDMPVGRSVEE 175 (219)
T ss_dssp SCEEE--CTTSHH--------HHHTT----CEET---------TT--TEEC-EEEEEECTTSBEEEEEEECTTCCCCHHH
T ss_pred ccccc--CcccHH--------HHHcC----Cccc---------CC--CeeE-EEEEEECCCCeEEEEEEecCCCCCCHHH
Confidence 99995 333322 22221 1110 00 0111 15799999999988762 222 3346
Q ss_pred HHHHHHHHh
Q psy6055 292 LEPDIVEEL 300 (307)
Q Consensus 292 Le~dIekLL 300 (307)
+.+.|++|-
T Consensus 176 vLr~l~aLQ 184 (219)
T 3tue_A 176 VLRLLEAFQ 184 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 666666653
No 102
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=98.20 E-value=2e-07 Score=84.13 Aligned_cols=125 Identities=12% Similarity=0.006 Sum_probs=72.0
Q ss_pred CCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCC---hhhhccccceeec----CCCCCccc
Q psy6055 148 GPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRY---KGKVLLIVHFRVS----GKGFVPKF 216 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs---~~EI~~~l~F~~p----g~~ygv~F 216 (307)
++++|+|++|+||++|+.- .+|+.|..|++.++..+ .+.+.|.++.+- ..+... +|+.- +...+++|
T Consensus 41 ~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~--aw~~~~~~~~~~~~l~f 118 (216)
T 3sbc_A 41 VFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLL--AWTNIPRKEGGLGPINI 118 (216)
T ss_dssp EEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHH--HHHTSCGGGTCCCSCSS
T ss_pred CCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHH--HHHHHHHHhCCccCccc
Confidence 3479999999999766433 78999999998887654 577777777542 211111 34420 01135899
Q ss_pred eeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecC--CC--CcccH
Q psy6055 217 DVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDA--SV--EPSEL 292 (307)
Q Consensus 217 PVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p--~~--~P~eL 292 (307)
||+. |.++.-+ -.|..+.... .+. .-..||||++|+|+....- .+ +.+++
T Consensus 119 plls--D~~~~va-k~YGv~~~~~----------------------g~~-~R~tFiID~~G~Ir~~~v~~~~~grn~dEi 172 (216)
T 3sbc_A 119 PLLA--DTNHSLS-RDYGVLIEEE----------------------GVA-LRGLFIIDPKGVIRHITINDLPVGRNVDEA 172 (216)
T ss_dssp CEEE--CTTSHHH-HHHTCEETTT----------------------TEE-CEEEEEECTTSBEEEEEEECTTBCCCHHHH
T ss_pred ceEe--CCCCHHH-HHcCCeeccC----------------------Cce-eeEEEEECCCCeEEEEEEcCCCCCCCHHHH
Confidence 9995 4333322 1121111100 010 1268999999999765522 22 33466
Q ss_pred HHHHHHHh
Q psy6055 293 EPDIVEEL 300 (307)
Q Consensus 293 e~dIekLL 300 (307)
.+.|+.|-
T Consensus 173 Lr~l~AlQ 180 (216)
T 3sbc_A 173 LRLVEAFQ 180 (216)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66666653
No 103
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=98.06 E-value=5.4e-06 Score=65.88 Aligned_cols=98 Identities=15% Similarity=0.086 Sum_probs=67.0
Q ss_pred CCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceeecCCCCCccceeeccc
Q psy6055 147 GGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRVSGKGFVPKFDVFGPG 222 (307)
Q Consensus 147 ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv~FPVf~Kv 222 (307)
.+|..++|++++||++| |+ +||++|.+.+|.++.+. .+.+ ++. |+. +
T Consensus 39 ~~~~~~~l~~~~~k~vl-v~f~a~wC~~C~~~~~~~~~~~~~~~~----------~~~----~~~--------------v 89 (141)
T 3hxs_A 39 YENHSKEWKYLGDKPAI-VDFYADWCGPCKMVAPILEELSKEYAG----------KIY----IYK--------------V 89 (141)
T ss_dssp CSSCCCCCCCCCSSCEE-EEEECTTCTTHHHHHHHHHHHHHHTTT----------TCE----EEE--------------E
T ss_pred cccchhHHHHhCCCEEE-EEEECCCCHHHHHHHHHHHHHHHHhcC----------ceE----EEE--------------E
Confidence 57899999999999877 55 89999998888775443 2221 111 321 2
Q ss_pred CCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 223 PVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 223 dVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
++.. ++ -|.... .|+.-++-+|+|++|+++ ++.+..+.++|++.|+++|.+
T Consensus 90 ~~~~---~~---~~~~~~----------------------~v~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~k 140 (141)
T 3hxs_A 90 NVDK---EP---ELARDF----------------------GIQSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLLK 140 (141)
T ss_dssp ETTT---CH---HHHHHT----------------------TCCSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC-
T ss_pred ECCC---CH---HHHHHc----------------------CCCCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHcc
Confidence 2211 11 122222 244557889999999998 888999999999999999864
No 104
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=98.03 E-value=1.3e-07 Score=82.91 Aligned_cols=65 Identities=6% Similarity=-0.001 Sum_probs=50.3
Q ss_pred CcccCCCC-CCCeEEEEc---CCCCCCcC-cchhhhhhc-ccCCCCC-ccC----CChhhhccccceeecCCCCCcc--c
Q psy6055 150 DRIDGSRL-RGPSHRSVG---TDHIVVPS-RLPSANVVD-PISGRGY-KLR----RYKGKVLLIVHFRVSGKGFVPK--F 216 (307)
Q Consensus 150 ~~vdLS~y-KGKVvLVVN---S~Cg~c~q-e~p~L~llf-PcnQFG~-QEp----gs~~EI~~~l~F~~pg~~ygv~--F 216 (307)
++++|++| +||++++++ .||+.|.. |++.++..+ .+.+.|. ++. .+....+ +|++ +.+++ |
T Consensus 37 ~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~---~f~~---~~~l~~~f 110 (176)
T 4f82_A 37 NACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMG---AWGR---DLHTAGKV 110 (176)
T ss_dssp EEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHH---HHHH---HTTCTTTS
T ss_pred eEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHH---HHHH---HhCCCCCc
Confidence 68999997 999877788 89999998 999987654 5777787 553 2334455 6884 77887 9
Q ss_pred eeec
Q psy6055 217 DVFG 220 (307)
Q Consensus 217 PVf~ 220 (307)
|++.
T Consensus 111 ~lLs 114 (176)
T 4f82_A 111 RMMA 114 (176)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9995
No 105
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=98.00 E-value=6.3e-06 Score=64.41 Aligned_cols=109 Identities=8% Similarity=-0.110 Sum_probs=69.0
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceeecCCCCCcccee
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRVSGKGFVPKFDV 218 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv~FPV 218 (307)
.++..++|+.......+||++||.- +||++|.+..|.++.+. .+. - .+. |+.
T Consensus 9 l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-~---------~v~----~~~----------- 63 (126)
T 2l57_A 9 INFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-G---------KFN----IYY----------- 63 (126)
T ss_dssp TTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-S---------SCE----EEE-----------
T ss_pred CCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-C---------CeE----EEE-----------
Confidence 3344566666667788999877433 89999998888775432 221 0 111 221
Q ss_pred ecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcccHHHHHHH
Q psy6055 219 FGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 219 f~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIek 298 (307)
+++.-+ .+ .-|.+.. .|+.-++-+|+|++|+++.++.+..+.++|++.|++
T Consensus 64 ---v~~~~d-~~---~~~~~~~----------------------~v~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 114 (126)
T 2l57_A 64 ---ARLEEE-KN---IDLAYKY----------------------DANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNS 114 (126)
T ss_dssp ---EETTSS-HH---HHHHHHT----------------------TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred ---EeCCCC-ch---HHHHHHc----------------------CCcceeEEEEECCCCCEEEEecCCCCHHHHHHHHHH
Confidence 110000 00 1122222 244456889999999999999999999999999999
Q ss_pred Hhhhhh
Q psy6055 299 ELMKRE 304 (307)
Q Consensus 299 LL~~~~ 304 (307)
++....
T Consensus 115 ~~~~~~ 120 (126)
T 2l57_A 115 LGVKEG 120 (126)
T ss_dssp HCCCCC
T ss_pred Hhcccc
Confidence 887543
No 106
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=97.97 E-value=8.8e-07 Score=73.02 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=32.3
Q ss_pred CcccceEEEECCCCcEEEEecCCC--CcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASV--EPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~--~P~eLe~dIekLL~~ 302 (307)
|..-++-+|||++|+++.++ +.. +.+++.+.|+++|++
T Consensus 114 v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~~ 153 (154)
T 2ju5_A 114 VTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALKL 153 (154)
T ss_dssp CCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHhc
Confidence 44457999999999999999 877 778899999998864
No 107
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=2.1e-06 Score=67.16 Aligned_cols=43 Identities=14% Similarity=0.120 Sum_probs=35.7
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhhhc
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKREER 306 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~~~ 306 (307)
|+.-++-+|||++|+++.++.+..+.++|++.|++++....++
T Consensus 84 v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~~~ 126 (130)
T 2kuc_A 84 VHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESEGHH 126 (130)
T ss_dssp CCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCCC--
T ss_pred CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhcccc
Confidence 3444688999999999999999999999999999998876543
No 108
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=96.99 E-value=3.1e-06 Score=66.38 Aligned_cols=41 Identities=17% Similarity=0.055 Sum_probs=34.2
Q ss_pred CcccceEEEECC-CCcE--EEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 264 VREPYEKFLVGA-RGYP--VARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 264 IkWNFTKFLIDr-dG~V--V~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
|+.-++-+|||+ +|++ +.++.+..++++|++.|++++++..
T Consensus 76 v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~ 119 (130)
T 2lst_A 76 VPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGG 119 (130)
Confidence 444568899995 6999 9999999999999999999997654
No 109
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=97.78 E-value=1.7e-06 Score=71.55 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=36.4
Q ss_pred CcccceEEEECCCCcEEEEecCCCC-cccHHHHHHHHhhhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVE-PSELEPDIVEELMKREE 305 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~-P~eLe~dIekLL~~~~~ 305 (307)
|..-++.+|||++|+++.++.+..+ ++++.+.|+++|++.+.
T Consensus 128 v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~~~~~ 170 (172)
T 3f9u_A 128 ANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLENYRK 170 (172)
T ss_dssp CCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHHHhhc
Confidence 4556799999999999999999888 99999999999987553
No 110
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=97.70 E-value=3.5e-05 Score=62.10 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=64.5
Q ss_pred cccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceeecCCCCCccceee
Q psy6055 144 SGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRVSGKGFVPKFDVF 219 (307)
Q Consensus 144 ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv~FPVf 219 (307)
...++++.++-...+||++| |+ +||++|.+..|.++.+. .+.+ ++. |+.
T Consensus 40 v~~l~~~~~~~~~~~~k~vl-v~F~a~wC~~C~~~~p~l~~~~~~~~~----------~~~----~~~------------ 92 (148)
T 3p2a_A 40 VINATAETLDKLLQDDLPMV-IDFWAPWCGPCRSFAPIFAETAAERAG----------KVR----FVK------------ 92 (148)
T ss_dssp CEECCTTTHHHHTTCSSCEE-EEEECSSCHHHHHHHHHHHHHHHHTTT----------TCE----EEE------------
T ss_pred ceecCHHHHHHHHhcCCcEE-EEEECCCCHHHHHHHHHHHHHHHHcCC----------ceE----EEE------------
Confidence 34567777765557888766 55 89999998888775432 1111 111 332
Q ss_pred cccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcccHHHHHHHH
Q psy6055 220 GPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEE 299 (307)
Q Consensus 220 ~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekL 299 (307)
+|+. . ++ .|.+.. .|+.-++-+|+ ++|+++.+|.+..+.++|.+.|+++
T Consensus 93 --vd~~--~-~~---~l~~~~----------------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~ 141 (148)
T 3p2a_A 93 --VNTE--A-EP---ALSTRF----------------------RIRSIPTIMLY-RNGKMIDMLNGAVPKAPFDNWLDEQ 141 (148)
T ss_dssp --EETT--T-CH---HHHHHT----------------------TCCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHHHH
T ss_pred --EECc--C-CH---HHHHHC----------------------CCCccCEEEEE-ECCeEEEEEeCCCCHHHHHHHHHHH
Confidence 2222 1 11 122222 13333564555 7999999999999999999999999
Q ss_pred hhhh
Q psy6055 300 LMKR 303 (307)
Q Consensus 300 L~~~ 303 (307)
|.+.
T Consensus 142 l~~~ 145 (148)
T 3p2a_A 142 LSRD 145 (148)
T ss_dssp HHSC
T ss_pred hccc
Confidence 9754
No 111
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=97.65 E-value=1.6e-06 Score=72.56 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=33.3
Q ss_pred ccceEEEECCCCcEEEEecCC----------CCcccHHHHHHHHhhhhhh
Q psy6055 266 EPYEKFLVGARGYPVARYDAS----------VEPSELEPDIVEELMKREE 305 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~----------~~P~eLe~dIekLL~~~~~ 305 (307)
.-++-+|+|++|+++.++.+. .+.++|.+.|+++|.+.++
T Consensus 103 ~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 152 (164)
T 1sen_A 103 YIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG 152 (164)
T ss_dssp CSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred cCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccH
Confidence 346889999999999998874 6778899999999887654
No 112
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=97.63 E-value=3.8e-05 Score=60.56 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=63.8
Q ss_pred CCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceeecCCCCCccce
Q psy6055 142 ENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRVSGKGFVPKFD 217 (307)
Q Consensus 142 ~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv~FP 217 (307)
.++...+++.++....+||++| |+ +||++|.+..|.++.+. .+++ ++. |+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~vl-v~F~a~wC~~C~~~~p~l~~~~~~~~~----------~v~----~~~---------- 79 (128)
T 3ul3_B 25 PRLQQNGSNIINGVNMKNTVIV-LYFFAKWCQACTMQSTEMDKLQKYYGK----------RIY----LLK---------- 79 (128)
T ss_dssp -CCCCCCCSSSSBTTSCCSEEE-EEEECTTCHHHHHHHHHHHHHHHHHGG----------GEE----EEE----------
T ss_pred CccccCCccHHHHHHccCCEEE-EEEECCCCHHHHHHhHHHHHHHHHhcC----------CeE----EEE----------
Confidence 3455678999999999999877 56 89999998888775442 1110 121 332
Q ss_pred eecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcccHHHHHH
Q psy6055 218 VFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIV 297 (307)
Q Consensus 218 Vf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIe 297 (307)
+++.. + .-|.++. .|+.-++-+++ ++|+++.++.+..+.++|++.|+
T Consensus 80 ----vd~d~---~---~~l~~~~----------------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 80 ----VDLDK---N---ESLARKF----------------------SVKSLPTIILL-KNKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp ----EEGGG---C---HHHHHHT----------------------TCCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHT
T ss_pred ----EECCC---C---HHHHHHc----------------------CCCCcCEEEEE-ECCEEEEEecCCCCHHHHHHHHH
Confidence 12111 1 1122222 23444687888 79999999999999888887775
Q ss_pred H
Q psy6055 298 E 298 (307)
Q Consensus 298 k 298 (307)
+
T Consensus 127 ~ 127 (128)
T 3ul3_B 127 K 127 (128)
T ss_dssp T
T ss_pred h
Confidence 3
No 113
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=97.56 E-value=5.1e-05 Score=65.72 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=51.1
Q ss_pred CCccc-CCC--CcccCCC-CCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCc-cCC----Chhhhccccceeec
Q psy6055 142 ENSGI-GGP--DRIDGSR-LRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYK-LRR----YKGKVLLIVHFRVS 208 (307)
Q Consensus 142 ~~ft~-ldG--~~vdLS~-yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~Q-Epg----s~~EI~~~l~F~~p 208 (307)
++|++ -+| ++++|++ ++||++|++- .+|+.|..+++.++... .+.+.|.+ +.+ +....+ +|+.
T Consensus 21 Pdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~---~w~~- 96 (171)
T 2xhf_A 21 PDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMA---AWGK- 96 (171)
T ss_dssp CCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHH---HHHH-
T ss_pred CCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHH---HHHH-
Confidence 44554 344 8999999 5999766555 69999999999887654 56667886 532 223333 6874
Q ss_pred CCCCCc--cceeec
Q psy6055 209 GKGFVP--KFDVFG 220 (307)
Q Consensus 209 g~~ygv--~FPVf~ 220 (307)
+.++ +|||++
T Consensus 97 --~~~~~~~f~lLS 108 (171)
T 2xhf_A 97 --TVDPEHKIRMLA 108 (171)
T ss_dssp --HHCTTCCSEEEE
T ss_pred --hcCCCCCeEEEE
Confidence 6667 899995
No 114
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=97.51 E-value=9.5e-06 Score=64.85 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=29.8
Q ss_pred CcccceEEEECCCCcEE--EEecCCCCcccHHHHHHHH
Q psy6055 264 VREPYEKFLVGARGYPV--ARYDASVEPSELEPDIVEE 299 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV--~Ry~p~~~P~eLe~dIekL 299 (307)
|..-++-+|||++|+++ .++.+..++++|++.|+++
T Consensus 89 v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 89 VLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp CCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 44456999999999999 7999999988888877654
No 115
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=97.32 E-value=5.5e-05 Score=58.89 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=27.0
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
+.-++ |+|-++|+++.++.+. ++++|++.|+++|
T Consensus 83 ~~~Pt-~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 116 (116)
T 3qfa_C 83 KSMPT-FQFFKKGQKVGEFSGA-NKEKLEATINELV 116 (116)
T ss_dssp CSSSE-EEEESSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred ccccE-EEEEeCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence 33356 4444999999999998 8899999998875
No 116
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=97.29 E-value=0.00016 Score=57.60 Aligned_cols=38 Identities=29% Similarity=0.271 Sum_probs=30.9
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++-+++ ++|+++.+|.+..+.++|++.|+++|..
T Consensus 102 v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~~ 139 (140)
T 1v98_A 102 VRSVPTLVLF-RRGAPVATWVGASPRRVLEERLRPYLEG 139 (140)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred CCccCEEEEE-eCCcEEEEEeCCCCHHHHHHHHHHHHcc
Confidence 3344575666 8999999999999999999999999864
No 117
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=97.24 E-value=2.8e-05 Score=67.78 Aligned_cols=66 Identities=9% Similarity=0.012 Sum_probs=48.1
Q ss_pred CcccCCC-CCCCeEEEEc---CCCCCCc-Ccchhhhhhc-cc-CCCCCc-cCC---ChhhhccccceeecCCCCCc-cce
Q psy6055 150 DRIDGSR-LRGPSHRSVG---TDHIVVP-SRLPSANVVD-PI-SGRGYK-LRR---YKGKVLLIVHFRVSGKGFVP-KFD 217 (307)
Q Consensus 150 ~~vdLS~-yKGKVvLVVN---S~Cg~c~-qe~p~L~llf-Pc-nQFG~Q-Epg---s~~EI~~~l~F~~pg~~ygv-~FP 217 (307)
+.++|++ ++||++||+- .||+.|. .+++.++..+ .+ .+.|.+ +.+ +...... +|++ ++++ +||
T Consensus 33 ~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~--~~~~---~~~~~~f~ 107 (182)
T 1xiy_A 33 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLK--SWFK---SMDIKKIK 107 (182)
T ss_dssp EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHH--HHHH---HTTCCSSE
T ss_pred eeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHH--HHHH---HcCCCCce
Confidence 7999998 7999877555 7999999 8998887655 47 778886 543 2222222 6874 6777 699
Q ss_pred eec
Q psy6055 218 VFG 220 (307)
Q Consensus 218 Vf~ 220 (307)
|+.
T Consensus 108 lLs 110 (182)
T 1xiy_A 108 YIS 110 (182)
T ss_dssp EEE
T ss_pred EEE
Confidence 995
No 118
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=97.23 E-value=0.00017 Score=57.80 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=29.8
Q ss_pred CcccceEEEE-CCCCc--EEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLV-GARGY--PVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLI-DrdG~--VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|+.-++-+++ |++|+ ++.++.+. ++++|++.|+++|.+.
T Consensus 90 v~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~~~ 131 (133)
T 3cxg_A 90 IKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCLEK 131 (133)
T ss_dssp CCSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSEEC
T ss_pred CCCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHHhh
Confidence 4445677777 45666 99999887 7889999999988653
No 119
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.17 E-value=0.0017 Score=50.45 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=33.9
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
|+.-++-++++++|+++.+|.+..+.++|.+.|++.|.+..
T Consensus 87 v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~~~~ 127 (130)
T 2dml_A 87 VQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGP 127 (130)
T ss_dssp CCSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHHHSS
T ss_pred CCccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHhcCC
Confidence 44456889999999878899998899999999999887654
No 120
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=97.16 E-value=0.00035 Score=54.83 Aligned_cols=36 Identities=6% Similarity=-0.097 Sum_probs=28.0
Q ss_pred cccceEEEECCCCcEEEEecC-------CCCcccHHHHHHHHh
Q psy6055 265 REPYEKFLVGARGYPVARYDA-------SVEPSELEPDIVEEL 300 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p-------~~~P~eLe~dIekLL 300 (307)
..-++-+|+|++|+++.++.+ ..+.++|++.|+++.
T Consensus 90 ~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 90 DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 445788999999999999988 456666777776654
No 121
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.16 E-value=0.00032 Score=55.30 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=30.8
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|+.-++-+|+ ++|+ +.+|.+..+.++|++.|+++|...
T Consensus 89 v~~~Pt~~~~-~~G~-~~~~~g~~~~~~l~~~l~~~~~~~ 126 (140)
T 2dj1_A 89 VSGYPTIKIL-KKGQ-AVDYDGSRTQEEIVAKVREVSQPD 126 (140)
T ss_dssp CCSSSEEEEE-ETTE-EEECCSCCCHHHHHHHHHHHHSSS
T ss_pred CCccCeEEEE-ECCc-EEEcCCCCCHHHHHHHHHHhcCCC
Confidence 4444687778 8899 778999999999999999998643
No 122
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=97.07 E-value=0.00012 Score=62.55 Aligned_cols=31 Identities=6% Similarity=-0.148 Sum_probs=24.9
Q ss_pred cccCCCCCCCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 151 RIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 151 ~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
...+++++||++| || +||++|..++|.|+.+
T Consensus 46 ~~~l~~~~~k~vv-v~F~A~WC~pC~~~~P~l~~l 79 (167)
T 1z6n_A 46 TERLQRIERRYRL-LVAGEMWCPDCQINLAALDFA 79 (167)
T ss_dssp HHHHHTCCSCEEE-EEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEE-EEEECCCChhHHHHHHHHHHH
Confidence 3446788999766 66 8999999999988754
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.02 E-value=0.0009 Score=59.33 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=30.9
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-||-+++ ++|+++.+|.+..+.++++..|++.+..
T Consensus 78 v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~lp~ 115 (287)
T 3qou_A 78 LRAIPTVYLF-QNGQPVDGFQGPQPEEAIRALLDXVLPR 115 (287)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred CCCCCeEEEE-ECCEEEEEeeCCCCHHHHHHHHHHHcCC
Confidence 5555687777 7999999999999988999888887643
No 124
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=96.96 E-value=0.001 Score=50.87 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=65.9
Q ss_pred CcccCCCCcccCC-CCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceeecCCCCCccce
Q psy6055 143 NSGIGGPDRIDGS-RLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRVSGKGFVPKFD 217 (307)
Q Consensus 143 ~ft~ldG~~vdLS-~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv~FP 217 (307)
.+..++++.++.. .-+||++| |+ +||++|.+..|.++.+. .+.+.+. ...+. |+.
T Consensus 8 ~v~~l~~~~f~~~v~~~~~~vl-v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~-----~~~v~----~~~---------- 67 (121)
T 2djj_A 8 PVTVVVAKNYNEIVLDDTKDVL-IEFYAPWCGHCKALAPKYEELGALYAKSEF-----KDRVV----IAK---------- 67 (121)
T ss_dssp SSEECCTTTTTTSSSCTTSCEE-EEEECSSCTTHHHHHHHHHHHHHHHTTSSC-----TTSSE----EEE----------
T ss_pred CeEEecccCHHHHhhcCCCCEE-EEEECCCCHhHHHhhHHHHHHHHHHhhccc-----CCceE----EEE----------
Confidence 3456788887765 35788766 56 89999999888775432 3332211 01122 332
Q ss_pred eecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcE-EEEecCCCCcccHHHHH
Q psy6055 218 VFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYP-VARYDASVEPSELEPDI 296 (307)
Q Consensus 218 Vf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~V-V~Ry~p~~~P~eLe~dI 296 (307)
+|+... ++ . . .|+.-++-++++.+|++ +.+|.+..+.++|++.|
T Consensus 68 ----vd~~~~---~~----~-----------------------~-~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i 112 (121)
T 2djj_A 68 ----VDATAN---DV----P-----------------------D-EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFI 112 (121)
T ss_dssp ----EETTTS---CC----S-----------------------S-CCSSSSEEEEECSSCTTSCCCCCCCSCHHHHHHHH
T ss_pred ----EECccc---cc----c-----------------------c-ccCcCCeEEEEeCcCCCCceEecCCCCHHHHHHHH
Confidence 222111 10 0 0 24445688999998885 78899988889999999
Q ss_pred HHHhhh
Q psy6055 297 VEELMK 302 (307)
Q Consensus 297 ekLL~~ 302 (307)
++++..
T Consensus 113 ~~~~~~ 118 (121)
T 2djj_A 113 AENGKY 118 (121)
T ss_dssp HHTSSS
T ss_pred HhccCc
Confidence 887753
No 125
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=96.93 E-value=0.00027 Score=54.25 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.3
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
|+.-++-++++ +|+++.++.+. ++++|++.|+++|
T Consensus 75 v~~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~l 109 (109)
T 3f3q_A 75 VSAMPTLLLFK-NGKEVAKVVGA-NPAAIKQAIAANA 109 (109)
T ss_dssp CCSSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred CCccCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHhhC
Confidence 44446766676 99999999988 7788998888775
No 126
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=96.92 E-value=0.00092 Score=55.20 Aligned_cols=38 Identities=21% Similarity=0.136 Sum_probs=31.2
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++-+|+ ++|+++.++.+..+.++|++.|+++|.+
T Consensus 116 i~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~~ 153 (155)
T 2ppt_A 116 IQGIPAFILF-HKGRELARAAGARPASELVGFVRGKLGA 153 (155)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred CCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence 4444676666 8999999999999999999999999865
No 127
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=96.90 E-value=0.00048 Score=54.81 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=31.5
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
|+.-++-+|+ ++|+++.++.+..+.++|++.|+++|+
T Consensus 92 v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~ 128 (128)
T 2o8v_B 92 IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 128 (128)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred CCccCEEEEE-eCCEEEEEEcCCCCHHHHHHHHHHhhC
Confidence 4455687888 999999999999999999999998874
No 128
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=96.89 E-value=0.00094 Score=53.10 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=32.7
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|+.-++-+++|++|+++ ++.+..+.++|++.|++++...
T Consensus 90 v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~~ 128 (136)
T 2l5l_A 90 IRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLKK 128 (136)
T ss_dssp CCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTSC
T ss_pred CCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhcc
Confidence 34446889999999998 7888889999999999998754
No 129
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=96.89 E-value=0.00019 Score=54.58 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=27.4
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
+.-++ |+|+++|+++.++.+. ++++|++.|++++
T Consensus 77 ~~~Pt-~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~ 110 (111)
T 2pu9_C 77 RVVPT-FKILKENSVVGEVTGA-KYDKLLEAIQAAR 110 (111)
T ss_dssp SBSSE-EEEESSSSEEEEEESS-CHHHHHHHHHHHH
T ss_pred CeeeE-EEEEeCCcEEEEEcCC-CHHHHHHHHHHhh
Confidence 33457 8999999999999887 4778888888776
No 130
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=96.88 E-value=0.0013 Score=49.23 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=30.2
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
+.-++-+++ ++|+++.++.+..+.++|++.|+++|+
T Consensus 73 ~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~ 108 (108)
T 2trx_A 73 RGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 108 (108)
T ss_dssp CSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred cccCEEEEE-eCCEEEEEEecCCCHHHHHHHHHHhhC
Confidence 334577777 899999999999999999999998874
No 131
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=96.87 E-value=0.00057 Score=56.23 Aligned_cols=39 Identities=5% Similarity=-0.120 Sum_probs=31.1
Q ss_pred CcccceEEEECCCCcEE---------EEecC-CCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPV---------ARYDA-SVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV---------~Ry~p-~~~P~eLe~dIekLL~~~ 303 (307)
|..-+|-+ |+++|+++ .++.+ ..+.++|++.|++++...
T Consensus 75 v~~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~ 123 (149)
T 3gix_A 75 ISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGA 123 (149)
T ss_dssp CCSSSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHH
T ss_pred CCccCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHh
Confidence 34445755 88999999 89988 788899999999998654
No 132
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=96.87 E-value=0.00032 Score=53.89 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=26.8
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
+.-++ |+|.++|+++.++.+ .++++|++.|+++|
T Consensus 84 ~~~Pt-~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l 117 (117)
T 2xc2_A 84 SAMPT-FIAIKNGEKVGDVVG-ASIAKVEDMIKKFI 117 (117)
T ss_dssp CSSSE-EEEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred Cccce-EEEEeCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence 33456 677799999999998 67888888888765
No 133
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=96.85 E-value=0.0012 Score=50.54 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=31.4
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++-+++ ++|+++.++.+..+.++|++.|++++..
T Consensus 69 v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~~~~ 106 (112)
T 2voc_A 69 VMSIPTLLVL-KDGEVVETSVGFKPKEALQELVNKHLLE 106 (112)
T ss_dssp CCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred CCcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 3444688888 9999999999999999999998877754
No 134
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=96.82 E-value=7.5e-05 Score=57.89 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=26.5
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
.-|+ |+|+++|+++.++.+.. +++|++.|++++
T Consensus 91 ~~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~ 123 (124)
T 1faa_A 91 VVPT-FKILKENSVVGEVTGAK-YDKLLEAIQAAR 123 (124)
T ss_dssp SSSE-EEEEETTEEEEEEESSC-HHHHHHHHHHHT
T ss_pred eeeE-EEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence 3356 88899999999998865 778888887765
No 135
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=96.80 E-value=0.0001 Score=58.35 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=29.2
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++ |+|.++|+++.++.+. ++++|++.|+++|..
T Consensus 97 v~~~Pt-~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 97 IKATPT-FFFLRDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp CCEESE-EEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred CCcccE-EEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 344456 4445999999999988 888999999998864
No 136
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.77 E-value=0.0021 Score=49.76 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=32.7
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|+.-++-+|+++ |+++.+|.+..+.++|.+.|+++|.+.
T Consensus 81 v~~~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~l~~~~~~~ 119 (133)
T 1x5d_A 81 IRGFPTIKIFQK-GESPVDYDGGRTRSDIVSRALDLFSDN 119 (133)
T ss_dssp CCSSSEEEEEET-TEEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred CCeeCeEEEEeC-CCceEEecCCCCHHHHHHHHHHHhhcc
Confidence 334468888887 999999999999999999999999764
No 137
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=96.75 E-value=0.00037 Score=54.52 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=24.7
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHH
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIek 298 (307)
|+--|| |++-++|+++.++.| .++++|++.|++
T Consensus 71 V~~~PT-~~~~~~G~~v~~~~G-~~~~~l~~~i~k 103 (105)
T 3zzx_A 71 IACMPT-FLFMKNGQKLDSLSG-ANYDKLLELVEK 103 (105)
T ss_dssp CCBSSE-EEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred CCeecE-EEEEECCEEEEEEeC-cCHHHHHHHHHh
Confidence 344456 666799999999998 477777777765
No 138
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=96.70 E-value=0.00089 Score=50.42 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=29.7
Q ss_pred CcccceEEEECCCCcEE--EEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPV--ARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV--~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++-+++ ++|+++ .+|.+..+.++|.+.|++++..
T Consensus 79 v~~~Pt~~~~-~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~ 118 (120)
T 1mek_A 79 VRGYPTIKFF-RNGDTASPKEYTAGREADDIVNWLKKRTGP 118 (120)
T ss_dssp CCSSSEEEEE-ESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred CCcccEEEEE-eCCCcCCcccccCccCHHHHHHHHHhccCC
Confidence 3344577777 789988 8999988889999999887753
No 139
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=96.64 E-value=0.0028 Score=47.55 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=31.2
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++-+++ ++|+++.++.+..+.++|++.|+++|.+
T Consensus 77 v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l~~ 114 (115)
T 1thx_A 77 VEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDTHLNN 114 (115)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred CCceeEEEEE-cCCEEEEEecCCCCHHHHHHHHHHHhcC
Confidence 3344577777 9999999999999999999999998864
No 140
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=96.63 E-value=0.00034 Score=59.98 Aligned_cols=107 Identities=10% Similarity=0.039 Sum_probs=68.3
Q ss_pred CCCCCcccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceeecCCCCCc
Q psy6055 139 ASPENSGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRVSGKGFVP 214 (307)
Q Consensus 139 ~~~~~ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv 214 (307)
+....+..++++.++....+||++| |+ +||++|.+..|.++.+. .+.+ .|. |+.
T Consensus 94 ~~~~~v~~l~~~~f~~~~~~~~~vl-v~F~a~wC~~C~~~~p~~~~l~~~~~~----------~v~----~~~------- 151 (210)
T 3apq_A 94 DDDPEIITLERREFDAAVNSGELWF-VNFYSPGCSHCHDLAPTWREFAKEVDG----------LLR----IGA------- 151 (210)
T ss_dssp TTCTTSEECCHHHHHHHHHHSCCEE-EEEECTTCHHHHHHHHHHHHHHHHTBT----------TBE----EEE-------
T ss_pred CCCCceEEecHHHHHHHHccCCcEE-EEEeCCCChhHHHHHHHHHHHHHHhcC----------ceE----EEE-------
Confidence 3334455577777776667889766 55 89999998888775432 1110 111 332
Q ss_pred cceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcccHHH
Q psy6055 215 KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEP 294 (307)
Q Consensus 215 ~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~ 294 (307)
|++.. ++ -|.... .|+.-+|-+|+ ++|+++.++.+..+.++|++
T Consensus 152 -------vd~~~---~~---~l~~~~----------------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~ 195 (210)
T 3apq_A 152 -------VNCGD---DR---MLCRMK----------------------GVNSYPSLFIF-RSGMAAVKYNGDRSKESLVA 195 (210)
T ss_dssp -------EETTT---CH---HHHHHT----------------------TCCSSSEEEEE-CTTSCCEECCSCCCHHHHHH
T ss_pred -------EECCc---cH---HHHHHc----------------------CCCcCCeEEEE-ECCCceeEecCCCCHHHHHH
Confidence 22211 11 122222 24445676777 99999999999999999999
Q ss_pred HHHHHhhhh
Q psy6055 295 DIVEELMKR 303 (307)
Q Consensus 295 dIekLL~~~ 303 (307)
.|+++|...
T Consensus 196 ~i~~~l~~~ 204 (210)
T 3apq_A 196 FAMQHVRST 204 (210)
T ss_dssp HHHHHHHCC
T ss_pred HHHHhCccc
Confidence 999998653
No 141
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=96.62 E-value=0.00071 Score=50.27 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=30.6
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
|+.-++-+++ ++|+++.++.+..+.++|.+.|+++|+
T Consensus 73 i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 109 (109)
T 3tco_A 73 VLNIPTTLIF-VNGQLVDSLVGAVDEDTLESTVNKYLK 109 (109)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred cccCCEEEEE-cCCcEEEeeeccCCHHHHHHHHHHHhC
Confidence 3344677777 999999999999999999999998873
No 142
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=96.59 E-value=0.0012 Score=52.38 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=29.6
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++ |+|.++|+++.++.+ .++++|++.|+++|.+
T Consensus 88 v~~~Pt-~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l~~ 124 (125)
T 1r26_A 88 VLQLPT-FIIARSGKMLGHVIG-ANPGMLRQKLRDIIKD 124 (125)
T ss_dssp CCSSSE-EEEEETTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred CCcccE-EEEEeCCeEEEEEeC-CCHHHHHHHHHHHhcC
Confidence 333456 667799999999998 6888999999998864
No 143
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=96.58 E-value=0.001 Score=52.38 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=26.8
Q ss_pred cceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 267 PYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 267 NFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
-++ |+|.++|+++.++.+ .++++|++.|+++|+
T Consensus 92 ~Pt-~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l~ 124 (124)
T 1xfl_A 92 MPT-FMFLKEGKILDKVVG-AKKDELQSTIAKHLA 124 (124)
T ss_dssp SSE-EEEEETTEEEEEEES-CCHHHHHHHHHHHCC
T ss_pred cCE-EEEEECCEEEEEEeC-CCHHHHHHHHHHhcC
Confidence 346 666799999999988 588889999988763
No 144
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=96.56 E-value=0.0014 Score=53.41 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=31.2
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|+.-++-+|++ +|+++.++.+ .++++|++.|+++|...
T Consensus 83 v~~~Pt~~~~~-~G~~~~~~~G-~~~~~l~~~i~~~l~~~ 120 (153)
T 2wz9_A 83 ISSVPTFLFFK-NSQKIDRLDG-AHAPELTKKVQRHASSG 120 (153)
T ss_dssp CCSSSEEEEEE-TTEEEEEEES-SCHHHHHHHHHHHSCTT
T ss_pred CCCCCEEEEEE-CCEEEEEEeC-CCHHHHHHHHHHHhccc
Confidence 44446888898 9999999988 47788999999998764
No 145
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=96.55 E-value=0.0013 Score=49.69 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=28.9
Q ss_pred cceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 267 PYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 267 NFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
-++ |+|.++|+++.++.+..+.++|++.|+++|+
T Consensus 78 ~Pt-~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 111 (112)
T 1t00_A 78 IPT-LNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111 (112)
T ss_dssp SSE-EEEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred ccE-EEEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence 345 5666999999999999999999999999885
No 146
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.55 E-value=0.002 Score=50.16 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=30.6
Q ss_pred CCcccceEEEECCCCcEE-EEec-CCCCcccHHHHHHHHhhhh
Q psy6055 263 DVREPYEKFLVGARGYPV-ARYD-ASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 263 ~IkWNFTKFLIDrdG~VV-~Ry~-p~~~P~eLe~dIekLL~~~ 303 (307)
.|+.-+|-+|++.+|++. .+|. +..+.++|++.|++++...
T Consensus 78 ~v~~~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~ 120 (133)
T 2dj3_A 78 KVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR 120 (133)
T ss_dssp CCSSSSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred CCCcCCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence 355667888998877653 3566 5578889999999998753
No 147
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=96.53 E-value=0.00053 Score=51.07 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.6
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
+.-++-+++ ++|+++.++.+..++++|++.|+++|
T Consensus 70 ~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 104 (105)
T 1nsw_A 70 MSIPTLILF-KGGRPVKQLIGYQPKEQLEAQLADVL 104 (105)
T ss_dssp CSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred ccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHh
Confidence 334677778 89999999999988888888887765
No 148
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=96.51 E-value=0.0012 Score=49.68 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=28.2
Q ss_pred cceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 267 PYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 267 NFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
-++ |+|.++|+++.++.+. ++++|++.|+++|+
T Consensus 79 ~Pt-~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~ 111 (112)
T 1ep7_A 79 MPT-FHVYKDGVKADDLVGA-SQDKLKALVAKHAA 111 (112)
T ss_dssp SSE-EEEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred ccE-EEEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence 356 7777999999999988 88899999999885
No 149
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=96.47 E-value=0.0012 Score=49.81 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=28.9
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
|+.-+|-+++ ++|+++.++.+..+.++|++.|+++|
T Consensus 69 v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 69 VFTGPTVLLF-YNGKEILRESRFISLENLERTIQLFE 104 (105)
T ss_dssp -CCCCEEEEE-ETTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred CCCCCEEEEE-eCCeEEEEEeCCcCHHHHHHHHHHhh
Confidence 4444676666 69999999999999999999998776
No 150
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=96.42 E-value=0.0012 Score=48.74 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=25.6
Q ss_pred cceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 267 PYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 267 NFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
-++ +++.++|+++.++.+ .++++|++.|+++|
T Consensus 73 ~Pt-~~~~~~g~~~~~~~G-~~~~~l~~~l~~~l 104 (104)
T 2vim_A 73 MPT-FVFIKDGKEVDRFSG-ANETKLRETITRHK 104 (104)
T ss_dssp SSE-EEEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred ccE-EEEEeCCcEEEEEeC-CCHHHHHHHHHhhC
Confidence 346 666679999999998 68888888888765
No 151
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=96.42 E-value=0.0025 Score=49.30 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=28.8
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
.-++-+++ ++|+++.++.+..+.++|++.|+++|
T Consensus 85 ~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 85 AVPTVLAM-KNGDVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp SSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred cccEEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence 33576666 89999999999989999999999887
No 152
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=96.41 E-value=0.00022 Score=60.17 Aligned_cols=41 Identities=15% Similarity=-0.006 Sum_probs=30.1
Q ss_pred CcccceEEEECCCCcEEEEecCC-------CCcc---cHHHHHHHHhhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDAS-------VEPS---ELEPDIVEELMKRE 304 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~-------~~P~---eLe~dIekLL~~~~ 304 (307)
|..-||-+++|++|+++.++.+. ..++ ++.+.|++.|.+.+
T Consensus 98 v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~ 148 (151)
T 3ph9_A 98 GQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQ 148 (151)
T ss_dssp CCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHh
Confidence 45557999999999999999887 4444 46666666666544
No 153
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=96.41 E-value=0.0013 Score=50.73 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=28.3
Q ss_pred EEECCCCcEEEEecCCCCcccHHHHHHHHhhhhhh
Q psy6055 271 FLVGARGYPVARYDASVEPSELEPDIVEELMKREE 305 (307)
Q Consensus 271 FLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~~ 305 (307)
|+|.++|+++.++.+ .++++|++.|+++|....+
T Consensus 93 ~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~~~~ 126 (130)
T 1wmj_A 93 FLFIKDGAEADKVVG-ARKDDLQNTIVKHVGATAA 126 (130)
T ss_dssp CCBCTTTTCCBCCCT-TCTTTHHHHHHHHTSSSCS
T ss_pred EEEEeCCeEEEEEeC-CCHHHHHHHHHHHHhccCC
Confidence 566699999999988 5888999999999976543
No 154
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=96.40 E-value=0.0015 Score=48.38 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=26.2
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
.-++ |++.++|+++.++.+ .++++|++.|+++|
T Consensus 74 ~~Pt-~~~~~~G~~~~~~~g-~~~~~l~~~i~~~l 106 (106)
T 1xwb_A 74 SMPT-FVFLKNGVKVEEFAG-ANAKRLEDVIKANI 106 (106)
T ss_dssp SSSE-EEEEETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred cccE-EEEEcCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence 3356 777799999999998 68888888887764
No 155
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=96.38 E-value=0.0019 Score=49.57 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=28.4
Q ss_pred cceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 267 PYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 267 NFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
-++ |+|.++|+++.++.+.. +++|++.|+++|.+
T Consensus 88 ~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~~ 121 (122)
T 2vlu_A 88 MPT-FLFMKEGDVKDRVVGAI-KEELTAKVGLHAAA 121 (122)
T ss_dssp SSE-EEEEETTEEEEEEESSC-HHHHHHHHHHHHSC
T ss_pred ccE-EEEEeCCEEEEEEeCcC-HHHHHHHHHHHhcc
Confidence 345 67779999999999888 88999999998853
No 156
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=96.38 E-value=0.00099 Score=53.35 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=33.0
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKREE 305 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~~ 305 (307)
|+.-++ |+|-++|+++.++.+..+.++|++.|+++|.+.++
T Consensus 76 v~~~Pt-~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~ 116 (140)
T 3hz4_A 76 VQGTPT-FKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEE 116 (140)
T ss_dssp CCEESE-EEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCE-EEEEeCCcEEEEEcCCCCHHHHHHHHHHHhccccc
Confidence 344455 55559999999999999999999999999986554
No 157
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=96.34 E-value=0.0024 Score=49.89 Aligned_cols=111 Identities=6% Similarity=-0.149 Sum_probs=61.9
Q ss_pred CCCCCCCcccCCCCcccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceeecCCC
Q psy6055 137 TSASPENSGIGGPDRIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRVSGKG 211 (307)
Q Consensus 137 ~~~~~~~ft~ldG~~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~pg~~ 211 (307)
.+..+.....++++.++-.-. .+|++| |+ +||++|.+..|.+..+. .+.+.. ....|. |+
T Consensus 10 ~~~~~~~v~~l~~~~f~~~~~~~~~~vl-v~F~a~wC~~C~~~~p~~~~la~~~~~~~-----~~~~v~----~~----- 74 (127)
T 3h79_A 10 DGERPSRVVELTDETFDSIVMDPEKDVF-VLYYVPWSRHSVAAMRLWDDLSMSQSQKR-----NHLTFV----AA----- 74 (127)
T ss_dssp ---CCCCCEECCTTTHHHHHTCTTCEEE-EEEECTTCHHHHHHHHHHHHHHHHHHTST-----TTTTEE----EE-----
T ss_pred CcCCCCceEECChhhHHHHHhCCCCCEE-EEEECCccHHHHHHhHHHHHHHHHHHhcc-----cCCCeE----EE-----
Confidence 344445555678887764333 478766 66 89999999888775432 111110 001111 32
Q ss_pred CCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEE-EEecCCCCcc
Q psy6055 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPV-ARYDASVEPS 290 (307)
Q Consensus 212 ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV-~Ry~p~~~P~ 290 (307)
++|+.- + .-|.... .|+--++-+|++..+++. .+|.+..+.+
T Consensus 75 ---------~vd~~~---~---~~l~~~~----------------------~v~~~Pt~~~~~~g~~~~~~~~~G~~~~~ 117 (127)
T 3h79_A 75 ---------RIDGEK---Y---PDVIERM----------------------RVSGFPTMRYYTRIDKQEPFEYSGQRYLS 117 (127)
T ss_dssp ---------EEETTT---C---HHHHHHT----------------------TCCSSSEEEEECSSCSSSCEECCSCCCHH
T ss_pred ---------EEEccc---c---HhHHHhc----------------------CCccCCEEEEEeCCCCCCceEecCCccHH
Confidence 233321 1 1233322 244446878887776653 6788888888
Q ss_pred cHHHHHHHH
Q psy6055 291 ELEPDIVEE 299 (307)
Q Consensus 291 eLe~dIekL 299 (307)
+|.+.|+++
T Consensus 118 ~l~~~i~~~ 126 (127)
T 3h79_A 118 LVDSFVFQN 126 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888764
No 158
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=96.30 E-value=0.0015 Score=47.72 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=29.8
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
.-++-+++ ++|+++.++.+..+.++|++.|+++|.
T Consensus 69 ~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 69 SLPTVIFF-KDGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp SSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred ccCEEEEE-ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 33576666 899999999999999999999999885
No 159
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=96.28 E-value=0.0033 Score=46.85 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=28.0
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
++ |+|.++|+++.++.+..+.++|++.|+++|+
T Consensus 75 Pt-~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 107 (107)
T 1dby_A 75 PT-IMVFKGGKKCETIIGAVPKATIVQTVEKYLN 107 (107)
T ss_dssp CE-EEEESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred CE-EEEEeCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence 46 5556899999999999999999999998873
No 160
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=96.25 E-value=0.0014 Score=52.26 Aligned_cols=40 Identities=13% Similarity=-0.085 Sum_probs=30.3
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
|+.-+| |+|.++|+++.++.+..+.+.+++.|++++...+
T Consensus 90 v~~~Pt-~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~~ 129 (135)
T 3emx_A 90 VEGTPT-LVFYKEGRIVDKLVGATPWSLKVEKAREIYGGEG 129 (135)
T ss_dssp CCSSSE-EEEEETTEEEEEEESCCCHHHHHHHHHHHC----
T ss_pred CceeCe-EEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCCc
Confidence 344454 6666799999999999999999999999998654
No 161
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=95.24 E-value=0.00072 Score=49.65 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=26.6
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
++-+++ ++|+++.++.+..+.++|++.|+++|
T Consensus 75 Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l 106 (106)
T 2yj7_A 75 PTLLLF-KNGQVVDRLVGAQPKEALKERIDKHL 106 (106)
Confidence 465666 89999999999888889998888765
No 162
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=96.22 E-value=0.0027 Score=63.32 Aligned_cols=120 Identities=9% Similarity=0.005 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCcccCCCCcccCCCCC-CCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceee
Q psy6055 133 RSQSTSASPENSGIGGPDRIDGSRLR-GPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRV 207 (307)
Q Consensus 133 ~~~s~~~~~~~ft~ldG~~vdLS~yK-GKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~ 207 (307)
..++.++.......++++.++-.-.+ ||++| |+ +||++|.+.+|.+..+. .+.+.+ ..|. |+.
T Consensus 3 ~~~~Ly~~~~~V~~Lt~~~f~~~v~~~~k~vl-V~FyA~WC~pCk~~~P~l~~la~~~~~~~-------~~v~----~~~ 70 (519)
T 3t58_A 3 HMSVLYSSSDPLTLLDADSVRPTVLGSSSAWA-VEFFASWCGHAIAFAPTWKELANDVKDWR-------PALN----LAV 70 (519)
T ss_dssp --CCSCCTTSSSEEECTTTHHHHHSSCSSEEE-EEEECTTSHHHHHHHHHHHHHHHHHGGGT-------TTEE----EEE
T ss_pred cccccCCCCCCcEECChHHHHHHHHhCCCeEE-EEEECCCCHHHHHHHHHHHHHHHHhhCcC-------CcEE----EEE
Confidence 34455666566667888877654444 46555 77 89999999998876442 222210 0111 332
Q ss_pred cCCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECC---CCcEEEEec
Q psy6055 208 SGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGA---RGYPVARYD 284 (307)
Q Consensus 208 pg~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDr---dG~VV~Ry~ 284 (307)
||+..+.. +-|.+.. .|+--+|-+++++ +|+++.++.
T Consensus 71 --------------VD~d~d~~----~~l~~~~----------------------~V~~~PTl~~f~~g~~~G~~~~~~~ 110 (519)
T 3t58_A 71 --------------LDCAEETN----SAVCREF----------------------NIAGFPTVRFFQAFTKNGSGATLPG 110 (519)
T ss_dssp --------------EETTSGGG----HHHHHHT----------------------TCCSBSEEEEECTTCCSCCCEEECC
T ss_pred --------------EECCcccc----HHHHHHc----------------------CCcccCEEEEEcCcccCCCceeEec
Confidence 33321111 1233322 2344468899997 888888888
Q ss_pred CCCCcccHHHHHHHHhhhhh
Q psy6055 285 ASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 285 p~~~P~eLe~dIekLL~~~~ 304 (307)
+..++++|++.|+++|.+..
T Consensus 111 g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 111 AGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp SSCCHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhhcc
Confidence 88999999999999997644
No 163
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=96.21 E-value=0.0015 Score=55.64 Aligned_cols=103 Identities=13% Similarity=0.026 Sum_probs=63.6
Q ss_pred cccCCCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceeecCCCCCccceee
Q psy6055 144 SGIGGPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRVSGKGFVPKFDVF 219 (307)
Q Consensus 144 ft~ldG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~pg~~ygv~FPVf 219 (307)
...++++.++....+||++| |+ +||++|.+.+|.+..+. .+.+.+ .+|. |+.
T Consensus 17 v~~l~~~~~~~~~~~~~~v~-v~F~a~wC~~C~~~~p~~~~~~~~~~~~~-------~~~~----~~~------------ 72 (241)
T 3idv_A 17 VLVLNDANFDNFVADKDTVL-LEFYAPWCGHCKQFAPEYEKIANILKDKD-------PPIP----VAK------------ 72 (241)
T ss_dssp EEEECTTTHHHHHTTCSEEE-EEEECTTCHHHHHHHHHHHHHHHHHHTSS-------SCCC----EEE------------
T ss_pred cEEecccCHHHHHhcCCeEE-EEEECCCCHHHHHhhHHHHHHHHHHhhcC-------CceE----EEE------------
Confidence 34578888776666899766 77 89999999998876543 222111 0111 221
Q ss_pred cccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECCCCcEEEEecCCCCcccHHHHHHHH
Q psy6055 220 GPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEE 299 (307)
Q Consensus 220 ~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekL 299 (307)
+|+. . ++ -|..+. .|+.-+|-+++ ++|+++ +|.+..+.++|.+.|+++
T Consensus 73 --vd~~--~-~~---~l~~~~----------------------~v~~~Pt~~~~-~~g~~~-~~~g~~~~~~l~~~i~~~ 120 (241)
T 3idv_A 73 --IDAT--S-AS---VLASRF----------------------DVSGYPTIKIL-KKGQAV-DYEGSRTQEEIVAKVREV 120 (241)
T ss_dssp --EETT--T-CH---HHHHHT----------------------TCCSSSEEEEE-ETTEEE-ECCSCSCHHHHHHHHHHH
T ss_pred --Eecc--C-CH---HHHHhc----------------------CCCcCCEEEEE-cCCCcc-cccCcccHHHHHHHHhhc
Confidence 2221 1 11 122222 23444676666 578888 688999999999999988
Q ss_pred hhh
Q psy6055 300 LMK 302 (307)
Q Consensus 300 L~~ 302 (307)
+..
T Consensus 121 ~~~ 123 (241)
T 3idv_A 121 SQP 123 (241)
T ss_dssp HST
T ss_pred cCc
Confidence 764
No 164
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=96.21 E-value=0.0028 Score=46.95 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=27.9
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
--++-+++ ++|+++.++.+..+.++|++.|+++|
T Consensus 74 ~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 107 (107)
T 2i4a_A 74 SIPTLMLV-RDGKVIDKKVGALPKSQLKAWVESAQ 107 (107)
T ss_dssp SSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHTC
T ss_pred ccCEEEEE-eCCEEEEEecCCCCHHHHHHHHHhcC
Confidence 33576777 99999999999988888988887754
No 165
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0087 Score=45.09 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=27.4
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-++ |+|-++|+++.++.+. .+++|++.|+++|..
T Consensus 74 v~~~Pt-~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 110 (112)
T 3d6i_A 74 ISAVPY-FIIIHKGTILKELSGA-DPKEYVSLLEDCKNS 110 (112)
T ss_dssp CCSSSE-EEEEETTEEEEEECSC-CHHHHHHHHHHHHHH
T ss_pred CCcccE-EEEEECCEEEEEecCC-CHHHHHHHHHHHHhh
Confidence 333456 4444899999999887 556799999988864
No 166
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=96.17 E-value=0.0096 Score=46.91 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=30.3
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
|+.-|+-+++ ++|+++.++.+..+.++|++.|+++|
T Consensus 87 v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 87 IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp CCBSSEEEEE-ESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred CCccCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 5555787888 99999999999988888988887765
No 167
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=96.17 E-value=0.0016 Score=48.12 Aligned_cols=32 Identities=22% Similarity=0.071 Sum_probs=27.4
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
++ ++|.++|+++.++.+..++++|++.|+++|
T Consensus 74 Pt-~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l 105 (105)
T 1fb6_A 74 PT-VLFFKNGERKESIIGAVPKSTLTDSIEKYL 105 (105)
T ss_dssp SE-EEEEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred cE-EEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Confidence 46 566689999999999999999999998875
No 168
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=96.15 E-value=0.0047 Score=46.11 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=30.5
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
|+.-++-+++ ++|+++.++.+..+.++|++.|+++|.
T Consensus 74 v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 74 LKGVPQILYF-KDGEYKGKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp CCSSCEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcCCEEEEE-ECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence 3334576666 899999999999999999999999875
No 169
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.13 E-value=0.0025 Score=49.47 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=29.9
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|+.-++-+|+ ++|++ .+|.+..+.++|++.|++++.+.
T Consensus 75 v~~~Pt~~~~-~~G~~-~~~~G~~~~~~l~~~l~~~~~~~ 112 (126)
T 1x5e_A 75 INALPTIYHC-KDGEF-RRYQGPRTKKDFINFISDKEWKS 112 (126)
T ss_dssp CCSSSEEEEE-ETTEE-EECCSCCCHHHHHHHHHTCGGGG
T ss_pred CcccCEEEEE-eCCeE-EEeecCCCHHHHHHHHHHHhhcc
Confidence 3444687788 89995 78999888899999999887643
No 170
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=96.09 E-value=0.0018 Score=47.96 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=28.2
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
|+.-++-+++ ++|+++.++.+. ++++|++.|+++|
T Consensus 71 v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~~l 105 (105)
T 3m9j_A 71 VKSMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV 105 (105)
T ss_dssp CCBSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred CCcCcEEEEE-ECCeEEEEEeCC-CHHHHHHHHHHhC
Confidence 3444576666 899999999998 8899999998875
No 171
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=96.03 E-value=0.0017 Score=49.47 Aligned_cols=35 Identities=20% Similarity=0.062 Sum_probs=27.3
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
..-++ |+|.++|+++.++.+. ++++|++.|+++|+
T Consensus 78 ~~~Pt-~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~ 112 (112)
T 1syr_A 78 TSMPT-FKVYKNGSSVDTLLGA-NDSALKQLIEKYAA 112 (112)
T ss_dssp CSSSE-EEEEETTEEEEEEESC-CHHHHHHHHHTTC-
T ss_pred CcccE-EEEEECCcEEEEEeCC-CHHHHHHHHHHhhC
Confidence 33356 7777899999999998 88889888887663
No 172
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=95.97 E-value=0.0068 Score=46.32 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=28.8
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
|+.-++-+++ ++|+++.++.+..++++|++.|++.+.
T Consensus 70 v~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~~~~~~~ 106 (110)
T 2l6c_A 70 FERVPTLVFI-RDGKVAKVFSGIMNPRELQALYASIHH 106 (110)
T ss_dssp CCSSCEEEEE-ESSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred CcccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence 3344677777 999999999999999999888876553
No 173
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.96 E-value=0.0012 Score=52.39 Aligned_cols=38 Identities=16% Similarity=-0.116 Sum_probs=26.1
Q ss_pred cccCCCCccc--CCCCCCCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 144 SGIGGPDRID--GSRLRGPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 144 ft~ldG~~vd--LS~yKGKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
...++.+.++ +.+-++|++| |+ +||++|.+..|.++.+
T Consensus 9 v~~l~~~~f~~~~~~~~~~~vl-v~f~a~wC~~C~~~~p~~~~l 51 (137)
T 2dj0_A 9 IKYFNDKTIDEELERDKRVTWI-VEFFANWSNDCQSFAPIYADL 51 (137)
T ss_dssp CEECCTTHHHHHHHHSTTSCEE-EEECCTTCSTTTTTHHHHHHH
T ss_pred EEEccHhhHHHHHhcCCCCEEE-EEEECCCCHHHHHHHHHHHHH
Confidence 3446666554 4556777666 55 8999999999877543
No 174
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=95.95 E-value=0.0036 Score=46.27 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=27.5
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
+.-++-+++ ++|+++.++.+..+.++|++.|+++|
T Consensus 72 ~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l 106 (106)
T 3die_A 72 MSIPTLIVF-KDGQPVDKVVGFQPKENLAEVLDKHL 106 (106)
T ss_dssp CSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred cccCEEEEE-eCCeEEEEEeCCCCHHHHHHHHHHhC
Confidence 334565556 59999999999999999998887764
No 175
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.86 E-value=0.0014 Score=56.81 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=30.8
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|+.-++ |+|-++|+++.++.+..+.++|++.|+++++..
T Consensus 82 v~~~Pt-~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~ 120 (222)
T 3dxb_A 82 IRGIPT-LLLFKNGEVAATKVGALSKGQLKEFLDANLAGS 120 (222)
T ss_dssp CCSBSE-EEEEETTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred CCcCCE-EEEEECCeEEEEeccccChHHHHHHHHhhcccc
Confidence 334456 444469999999999999999999999998643
No 176
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=95.86 E-value=0.0063 Score=53.05 Aligned_cols=117 Identities=8% Similarity=0.032 Sum_probs=66.5
Q ss_pred CCCCCCCCCCcccCCCCcccCCCC-CCCeEEEEc---CCCCCCcCcchhhhhhc-ccCCCCCccCCChhhhccccceeec
Q psy6055 134 SQSTSASPENSGIGGPDRIDGSRL-RGPSHRSVG---TDHIVVPSRLPSANVVD-PISGRGYKLRRYKGKVLLIVHFRVS 208 (307)
Q Consensus 134 ~~s~~~~~~~ft~ldG~~vdLS~y-KGKVvLVVN---S~Cg~c~qe~p~L~llf-PcnQFG~QEpgs~~EI~~~l~F~~p 208 (307)
.++.++.......++++.++-.-. .+|++| |+ +||++|.+..|.+..+. .+.+.. ..+. |+.
T Consensus 4 ~~~l~~~~~~v~~l~~~~f~~~i~~~~~~vl-v~F~a~wC~~C~~~~p~~~~l~~~~~~~~-------~~v~----~~~- 70 (244)
T 3q6o_A 4 MSALYSPSDPLTLLQADTVRGAVLGSRSAWA-VEFFASWCGHCIAFAPTWXALAEDVKAWR-------PALY----LAA- 70 (244)
T ss_dssp --CCSCTTSSSEEECTTTHHHHHSSCSSEEE-EEEECTTCHHHHHHHHHHHHHHHHTGGGT-------TTEE----EEE-
T ss_pred ccCCCCCCCCceeCChhhHHHHHhhCCCeEE-EEEECCcCHHHHHHHHHHHHHHHHHHhcc-------CcEE----EEE-
Confidence 344455555556677776653222 357655 67 89999999888775442 222210 0111 332
Q ss_pred CCCCCccceeecccCCCCCCCChhHHHHHHhCCCCccCCCccccccCCCCCCCCCCcccceEEEECC-----CCcEEEEe
Q psy6055 209 GKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGA-----RGYPVARY 283 (307)
Q Consensus 209 g~~ygv~FPVf~KvdVNG~~ahPlyk~LK~~~~~~~g~fG~~~~~~~~~p~~~~~IkWNFTKFLIDr-----dG~VV~Ry 283 (307)
+|+.-+.. +-|.+.. .|+.-++-++++. +|.++ ++
T Consensus 71 -------------vd~~~~~~----~~l~~~~----------------------~v~~~Pt~~~~~~g~~~~~g~~~-~~ 110 (244)
T 3q6o_A 71 -------------LDCAEETN----SAVCRDF----------------------NIPGFPTVRFFXAFTXNGSGAVF-PV 110 (244)
T ss_dssp -------------EETTSTTT----HHHHHHT----------------------TCCSSSEEEEECTTCCSSSCEEC-CC
T ss_pred -------------EeCCchhh----HHHHHHc----------------------CCCccCEEEEEeCCCcCCCCeeE-ec
Confidence 33322211 1222222 2555578888886 35555 66
Q ss_pred cCCCCcccHHHHHHHHhhhhh
Q psy6055 284 DASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 284 ~p~~~P~eLe~dIekLL~~~~ 304 (307)
.+ .++++|++.|+++|.+..
T Consensus 111 ~g-~~~~~l~~~i~~~l~~~~ 130 (244)
T 3q6o_A 111 AG-ADVQTLRERLIDALESHH 130 (244)
T ss_dssp TT-CCHHHHHHHHHHHHHTCT
T ss_pred CC-CCHHHHHHHHHHHHHhcc
Confidence 66 688999999999997654
No 177
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=95.72 E-value=0.0079 Score=45.02 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=26.2
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
++ |++.++|+++.++.+ .++++|++.|+++|.
T Consensus 81 Pt-~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 81 PT-FIFLKDGKLVDKTVG-ADKDGLPTLVAKHAT 112 (113)
T ss_dssp TE-EEEEETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred cE-EEEEeCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence 35 444489999999988 688899999999875
No 178
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=95.71 E-value=0.0027 Score=49.37 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=26.0
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
++ |+|.++|+++.++.+. ++++|++.|+++|+
T Consensus 90 Pt-~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~ 121 (121)
T 2j23_A 90 PT-FVFFKNGQKIDTVVGA-DPSKLQAAITQHSA 121 (121)
T ss_dssp SE-EEEEETTEEEEEEESS-CHHHHHHHHHHHTC
T ss_pred cE-EEEEECCeEEeeEcCC-CHHHHHHHHHHhhC
Confidence 45 4444799999999988 88899999988874
No 179
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=95.71 E-value=0.0058 Score=45.08 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=28.6
Q ss_pred cceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 267 PYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 267 NFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
-++-+++ ++|+++.++.+..+.++|++.|+++|..
T Consensus 73 ~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~~ 107 (109)
T 2yzu_A 73 IPTVILF-KDGQPVEVLVGAQPKRNYQAKIEKHLPA 107 (109)
T ss_dssp SSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred CCEEEEE-eCCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence 3576777 8999999999999999999999988764
No 180
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=95.53 E-value=0.0037 Score=47.23 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=26.8
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
++ |+|.++|+++.++.+ .++++|++.|+++|...
T Consensus 83 Pt-~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~~ 116 (118)
T 2vm1_A 83 PT-FLFIKDGEKVDSVVG-GRKDDIHTKIVALMGSA 116 (118)
T ss_dssp SE-EEEEETTEEEEEEES-CCHHHHHHHHHHHHC--
T ss_pred cE-EEEEeCCeEEEEecC-CCHHHHHHHHHHHhccc
Confidence 45 555589999999988 58889999999998654
No 181
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=95.51 E-value=0.013 Score=48.19 Aligned_cols=40 Identities=10% Similarity=-0.061 Sum_probs=27.5
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhhh
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKREE 305 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~~ 305 (307)
+--+|-+|+ ++|+++.++.+..+.++|++.|+++|....+
T Consensus 90 ~~iPT~~~f-k~G~~v~~~~G~~~~~~l~~~i~~~l~~~~~ 129 (142)
T 2es7_A 90 RRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVDTPAA 129 (142)
T ss_dssp CSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC----
T ss_pred CcCCeEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhccccc
Confidence 333587888 9999999999998999999999999976544
No 182
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=95.44 E-value=0.01 Score=44.45 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=24.9
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
|+.-++-+++ ++|+++.++.+. .+++|++.|+++|
T Consensus 72 v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l 106 (107)
T 1gh2_A 72 ISATPTFQFF-RNKVRIDQYQGA-DAVGLEEKIKQHL 106 (107)
T ss_dssp CCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred CCcccEEEEE-ECCeEEEEEeCC-CHHHHHHHHHHhc
Confidence 3344564444 899999999884 4556888888776
No 183
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=95.38 E-value=0.0028 Score=49.21 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=23.5
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHHH
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIek 298 (307)
+.-++ |+|.++|+++.++.+.. +++|++.|++
T Consensus 82 ~~~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~l~~ 113 (114)
T 2oe3_A 82 TAMPT-FVLGKDGQLIGKIIGAN-PTALEKGIKD 113 (114)
T ss_dssp CSBSE-EEEEETTEEEEEEESSC-HHHHHHHHHT
T ss_pred CcccE-EEEEeCCeEEEEEeCCC-HHHHHHHHHh
Confidence 33346 56669999999999877 7777776653
No 184
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=95.34 E-value=0.011 Score=48.14 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=27.3
Q ss_pred CcccceEEEECCCCcEEEE---------ecCCCC-cccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVAR---------YDASVE-PSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~R---------y~p~~~-P~eLe~dIekLL~~~ 303 (307)
|+.-+|-+++ ++|+++.+ +.+..+ .++|++.|+++++.+
T Consensus 75 i~~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~ 123 (142)
T 1qgv_A 75 LYDPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA 123 (142)
T ss_dssp SCSSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence 4555676666 68999874 444443 678999999998764
No 185
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=95.25 E-value=0.024 Score=40.28 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=23.5
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
|+.-++ ++| +|++ ++.+..+.++|++.|+++|
T Consensus 54 v~~~Pt-~~~--~G~~--~~~G~~~~~~l~~~l~~~l 85 (85)
T 1fo5_A 54 IMAVPT-IVI--NGDV--EFIGAPTKEALVEAIKKRL 85 (85)
T ss_dssp TCCSSE-EEE--TTEE--ECCSSSSSHHHHHHHHHHC
T ss_pred CcccCE-EEE--CCEE--eeecCCCHHHHHHHHHHhC
Confidence 333356 444 8988 8888888889999998765
No 186
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=95.10 E-value=0.007 Score=46.44 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=24.4
Q ss_pred cccceEEEECCCCcEEEEecCCCCcccHHHHHH
Q psy6055 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIV 297 (307)
Q Consensus 265 kWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIe 297 (307)
+.-||-+++ ++|+++.++.+..+.++|++.|+
T Consensus 86 ~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~ 117 (118)
T 1zma_A 86 PTVPGFVHI-TDGQINVRCDSSMSAQEIKDFAG 117 (118)
T ss_dssp CSSCEEEEE-ETTEEEEECCTTCCHHHHHHHHT
T ss_pred CCCCeEEEE-ECCEEEEEecCCCCHHHHHHHhh
Confidence 334576666 69999999999888887777664
No 187
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=95.09 E-value=0.037 Score=39.27 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=23.0
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
.-++-+ | +|++ ++.+..+.++|++.|+++|
T Consensus 55 ~~Pt~~-~--~G~~--~~~G~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 55 AVPAIA-I--NGVV--RFVGAPSREELFEAINDEM 84 (85)
T ss_dssp CSSEEE-E--TTTE--EEECSSCCHHHHHHHHHHC
T ss_pred eeCEEE-E--CCEE--EEccCCCHHHHHHHHHHHh
Confidence 335644 4 8998 7888888889999998876
No 188
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=94.88 E-value=0.013 Score=49.53 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=30.7
Q ss_pred cceEEEECCC-CcEEEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 267 PYEKFLVGAR-GYPVARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 267 NFTKFLIDrd-G~VV~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
-++-++||++ |+.+.++.+ .+++++.+.|++.|.+-.
T Consensus 102 ~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~ 139 (153)
T 2dlx_A 102 FPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHG 139 (153)
T ss_dssp SSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcC
Confidence 3588899998 888888876 899999999999987543
No 189
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=94.84 E-value=0.0039 Score=53.90 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=21.4
Q ss_pred CCCCcccCCCCCCCeEEEEc---CCCCCCcC
Q psy6055 147 GGPDRIDGSRLRGPSHRSVG---TDHIVVPS 174 (307)
Q Consensus 147 ldG~~vdLS~yKGKVvLVVN---S~Cg~c~q 174 (307)
.+.+.++..+.+||++| |+ +||++|..
T Consensus 27 ~~~ea~~~A~~~~KpVl-vdF~A~WC~~Ck~ 56 (173)
T 3ira_A 27 WGEEAFEKARKENKPVF-LSIGYSTCHWCHM 56 (173)
T ss_dssp SSHHHHHHHHHHTCCEE-EEEECTTCHHHHH
T ss_pred cCHHHHHHHHHhCCCEE-EecccchhHhhcc
Confidence 34667788888999877 67 89999964
No 190
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=94.71 E-value=0.012 Score=56.08 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=31.1
Q ss_pred CcccceEEEECCCCcE-EEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYP-VARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~V-V~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|+--+|-++++++|++ +.+|.+..+.++|.+.|++.+..
T Consensus 423 v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~~ 462 (481)
T 3f8u_A 423 VRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATN 462 (481)
T ss_dssp CCSSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHCSS
T ss_pred CcccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhcCC
Confidence 3444688899888875 77899999999999999988764
No 191
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=94.64 E-value=0.0032 Score=48.29 Aligned_cols=40 Identities=8% Similarity=-0.091 Sum_probs=29.3
Q ss_pred CcccceEEEECCCCcEEEEecCC----CCcccHHHHHHHHhhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDAS----VEPSELEPDIVEELMKRE 304 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~----~~P~eLe~dIekLL~~~~ 304 (307)
|+.-++-++++.+|+ +.++.+. .+.++|++.|+++|++.+
T Consensus 73 v~~~Pt~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 116 (122)
T 3aps_A 73 IKAYPSVKLYQYERA-KKSIWEEQINSRDAKTIAALIYGKLETLQ 116 (122)
T ss_dssp CCSSSEEEEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHHHHCC-
T ss_pred CCccceEEEEeCCCc-cceeeccccCcCCHHHHHHHHHHHHHhhh
Confidence 444468888888777 5566554 688899999999997654
No 192
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=94.58 E-value=0.0071 Score=45.95 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=27.0
Q ss_pred cceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 267 PYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 267 NFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
-++ |+|.++|+++.++.+..+.++|++.|+++|.
T Consensus 85 ~Pt-~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~ 118 (121)
T 2i1u_A 85 IPT-LILFKDGQPVKRIVGAKGKAALLRELSDVVP 118 (121)
T ss_dssp SSE-EEEEETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred CCE-EEEEECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 346 4555799999999999988888888877764
No 193
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=94.51 E-value=0.0059 Score=47.48 Aligned_cols=39 Identities=5% Similarity=-0.454 Sum_probs=27.0
Q ss_pred cccCCCCcccCC-CC--CCCeEEEEc--CCCCCCcCcchhhhhh
Q psy6055 144 SGIGGPDRIDGS-RL--RGPSHRSVG--TDHIVVPSRLPSANVV 182 (307)
Q Consensus 144 ft~ldG~~vdLS-~y--KGKVvLVVN--S~Cg~c~qe~p~L~ll 182 (307)
+..++|+..+|+ +. .||++||.- +||++|....|.++.+
T Consensus 5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l 48 (118)
T 2f51_A 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSI 48 (118)
T ss_dssp SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHH
Confidence 445778877776 34 488766333 8999998888776543
No 194
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=94.47 E-value=0.042 Score=40.72 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=26.6
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHH
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIek 298 (307)
|+.-++ +++-++|+++.++.+..+.++|++.|++
T Consensus 76 v~~~Pt-~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 76 VRGYPT-LLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp CCSSSE-EEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred CCcccE-EEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 344456 5555999999999999998888888865
No 195
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=94.36 E-value=0.014 Score=49.55 Aligned_cols=34 Identities=6% Similarity=0.166 Sum_probs=28.4
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL 300 (307)
--++ ++|.++|+++.+|.+..+.++|++.|+++|
T Consensus 192 ~~Pt-~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 192 AVPK-IVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp SSCE-EEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred ccCe-EEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence 3357 666689999999999999999999998876
No 196
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.81 E-value=0.043 Score=43.82 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=23.5
Q ss_pred CcccceEEEECCCCcEEEEecCCC-------CcccHHHHHHHH
Q psy6055 264 VREPYEKFLVGARGYPVARYDASV-------EPSELEPDIVEE 299 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~-------~P~eLe~dIekL 299 (307)
|+.-+|-+++ ++|+++.++.+.. +.++|++.|++.
T Consensus 78 i~~~Pt~~~~-~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~ 119 (135)
T 2dbc_A 78 DNCLPTIFVY-KNGQIEGKFIGIIECGGINLKLEELEWKLSEV 119 (135)
T ss_dssp SSCCSEEEEE-SSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred CCCCCEEEEE-ECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence 4455675555 5999999998765 445566666554
No 197
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=91.76 E-value=0.2 Score=49.80 Aligned_cols=40 Identities=5% Similarity=-0.284 Sum_probs=26.6
Q ss_pred CCcccCCCCccc--CCCCCCCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 142 ENSGIGGPDRID--GSRLRGPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 142 ~~ft~ldG~~vd--LS~yKGKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
.....++.+.++ +.+-++|++| |+ +||++|.+.+|.+..+
T Consensus 23 ~~V~~Lt~~~F~~~l~~~~~k~Vl-V~FyA~WC~pCk~~~P~l~~l 67 (470)
T 3qcp_A 23 SSVVDLSGDDFSRVHRVAPLCPWI-VLFYNDGCGACRRYASTFSKF 67 (470)
T ss_dssp TTEEECSCSCGGGTCTTGGGSCEE-EEEECTTCHHHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHhCCCCeEE-EEEECCCCHHHHHHHHHHHHH
Confidence 334456666654 2233457665 77 8999999999888654
No 198
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=91.61 E-value=0.053 Score=46.24 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=25.7
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
++-+ | +|+ +.+|.+..+.++|.+.|++++...+
T Consensus 191 Pt~~-~--~G~-~~~~~G~~~~~~l~~~l~~~~~~~~ 223 (229)
T 2ywm_A 191 PKIV-I--NKG-VAEFVGAQPENAFLGYIMAVYEKLK 223 (229)
T ss_dssp SEEE-E--GGG-TEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred CEEE-E--CCE-EEEeeCCCCHHHHHHHHHHHhhhhh
Confidence 4644 4 788 5778898898999999999987643
No 199
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=91.43 E-value=0.11 Score=46.00 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=23.9
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
+|-|+ +|+++ |.+..+.++|.+.|+++|..
T Consensus 198 Pt~~i---~G~~~--~~G~~~~~~l~~~l~~~~~~ 227 (243)
T 2hls_A 198 PSIAI---NGYLV--FVGVPYEEDFLDYVKSAAEG 227 (243)
T ss_dssp SEEEE---TTEEE--EESCCCHHHHHHHHHHHHTT
T ss_pred CeEEE---CCEEE--EeCCCCHHHHHHHHHHHhhc
Confidence 46555 78875 88888888999999998864
No 200
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=90.77 E-value=0.035 Score=45.46 Aligned_cols=33 Identities=6% Similarity=-0.094 Sum_probs=25.4
Q ss_pred CCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhh
Q psy6055 148 GPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSAN 180 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~ 180 (307)
++..+.+.+-.+|++|++= .||++|.+.+|.+.
T Consensus 11 ~~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~ 45 (175)
T 3gyk_A 11 DPNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQ 45 (175)
T ss_dssp CTTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHH
Confidence 5667778888999877443 79999988877664
No 201
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=89.44 E-value=0.29 Score=49.74 Aligned_cols=34 Identities=6% Similarity=-0.034 Sum_probs=27.0
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
--++-+|+ ++|++ .+|.+..+.++|.+.|++++.
T Consensus 509 ~~Pt~~~~-~~g~~-~~~~g~~~~~~l~~fi~~~~~ 542 (780)
T 3apo_A 509 AYPTTVVF-NQSSI-HEYEGHHSAEQILEFIEDLRN 542 (780)
T ss_dssp SSSEEEEE-ETTEE-EEECSCSCHHHHHHHHHHHHS
T ss_pred cCCeEEEE-cCCce-eeecCcccHHHHHHHHHhhcc
Confidence 34577778 56877 788888888899999998875
No 202
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=89.40 E-value=0.067 Score=49.20 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=25.4
Q ss_pred ccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 266 EPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 266 WNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
--+|-+++ ++|+ +.+|.+..+.++|.+.|++.+.
T Consensus 89 ~~Pt~~~~-~~g~-~~~~~G~~~~~~l~~~i~~~~~ 122 (350)
T 1sji_A 89 EEGSLYVL-KGDR-TIEFDGEFAADVLVEFLLDLIE 122 (350)
T ss_dssp STTEEEEE-ETTE-EEEECSCCCHHHHHHHHHTTSS
T ss_pred ccceEEEE-ECCc-EEEecCCCCHHHHHHHHHHhcC
Confidence 33576667 7898 4588888888888888877654
No 203
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=88.47 E-value=0.21 Score=45.22 Aligned_cols=24 Identities=8% Similarity=-0.195 Sum_probs=18.9
Q ss_pred CCCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 158 RGPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 158 KGKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
+||++| |+ +||++|....|.|..+
T Consensus 132 ~~k~Vv-V~Fya~wC~~Ck~l~p~l~~L 158 (245)
T 1a0r_P 132 KITTIV-VHIYEDGIKGCDALNSSLICL 158 (245)
T ss_dssp TTCEEE-EEEECTTSTTHHHHHHHHHHH
T ss_pred CCCEEE-EEEECCCChHHHHHHHHHHHH
Confidence 588766 67 8999999988877543
No 204
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=87.97 E-value=0.23 Score=42.04 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=24.7
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
++-+++ ++|+++. |.+..+.++|.+.|++.+.
T Consensus 206 Pt~~~~-~~g~~~~-~~g~~~~~~l~~~l~~~~~ 237 (241)
T 3idv_A 206 PTLKIF-RKGRPYD-YNGPREKYGIVDYMIEQSG 237 (241)
T ss_dssp SEEEEE-ETTEEEE-CCSCCSHHHHHHHHHHHTT
T ss_pred CEEEEE-ECCeEEE-ecCCCCHHHHHHHHHhhhC
Confidence 454444 5799887 8888888899999988765
No 205
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=87.75 E-value=0.093 Score=40.03 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=18.4
Q ss_pred CCCcEEEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 275 ARGYPVARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 275 rdG~VV~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
.+|+++. +..++++|++.|++.+...|
T Consensus 54 ~~G~~v~---g~~~~~~L~~~l~~~~~~~~ 80 (87)
T 1ttz_A 54 PMGRELD---WPFDAPRLRAWLDAAPHALE 80 (87)
T ss_dssp TTCCEEE---SCCCHHHHHHHHHTCC----
T ss_pred ECCEEEe---CCCCHHHHHHHHHHHHHHHh
Confidence 7788885 56788889998888776554
No 206
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=87.74 E-value=0.18 Score=43.78 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=27.9
Q ss_pred CcccceEEEECCCCcEE--E-------EecCCCC-cccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPV--A-------RYDASVE-PSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV--~-------Ry~p~~~-P~eLe~dIekLL~~~ 303 (307)
|+--+| |++=++|+.+ . +..+... .++|++.|++++..+
T Consensus 93 V~siPT-~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 93 LYDPVS-VMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp CCSSEE-EEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCE-EEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence 333345 5444788888 5 7888766 788999999988754
No 207
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=87.55 E-value=0.057 Score=50.48 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=28.6
Q ss_pred CcccceEEEECCCCcEEEE-ecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVAR-YDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~R-y~p~~~P~eLe~dIekLL~~ 302 (307)
|+.-+|-+ +-++|+++.+ |.+..+.++|.+.|++.+..
T Consensus 80 v~~~Pt~~-~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~ 118 (382)
T 2r2j_A 80 ISKYPTLK-LFRNGMMMKREYRGQRSVKALADYIRQQKSD 118 (382)
T ss_dssp CCEESEEE-EEETTEEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred CCcCCEEE-EEeCCcEeeeeecCcchHHHHHHHHHHhccC
Confidence 34445644 4478999885 99988899999999988753
No 208
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=87.20 E-value=0.38 Score=46.18 Aligned_cols=34 Identities=3% Similarity=-0.039 Sum_probs=26.5
Q ss_pred cceEEEECCCCcE--EEEecCCCCcccHHHHHHHHhh
Q psy6055 267 PYEKFLVGARGYP--VARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 267 NFTKFLIDrdG~V--V~Ry~p~~~P~eLe~dIekLL~ 301 (307)
-+|-+++ ++|++ +.+|.+..+.++|.+.|++.+.
T Consensus 87 ~Pt~~~~-~~g~~~~~~~~~G~~~~~~l~~~l~~~~~ 122 (504)
T 2b5e_A 87 FPSLKIF-KNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 122 (504)
T ss_dssp SSEEEEE-ETTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred CCEEEEE-eCCccccceeecCCCCHHHHHHHHHHhcC
Confidence 3565555 56887 8899998899999999988774
No 209
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=85.50 E-value=0.34 Score=40.19 Aligned_cols=35 Identities=17% Similarity=-0.028 Sum_probs=24.1
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|.-.++ |+|| |+.+ ..+..++++|.+.|+++|++.
T Consensus 148 v~gtPt-~vin--g~~~--~~g~~~~~~l~~~i~~~l~~~ 182 (195)
T 2znm_A 148 IDSTPT-VIVG--GKYR--VIFNNGFDGGVHTIKELVAKV 182 (195)
T ss_dssp CCSSSE-EEET--TTEE--ECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCe-EEEC--CEEE--EcCCCCHHHHHHHHHHHHHHH
Confidence 444467 8995 6542 345567788999999998753
No 210
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=84.59 E-value=0.27 Score=44.78 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=25.8
Q ss_pred CcccceEEEECCC-CcEEEEecCCCCcccHHHHHHH
Q psy6055 264 VREPYEKFLVGAR-GYPVARYDASVEPSELEPDIVE 298 (307)
Q Consensus 264 IkWNFTKFLIDrd-G~VV~Ry~p~~~P~eLe~dIek 298 (307)
|+.-+|-+|++++ |+.+.+|.+..+.++|.+.|++
T Consensus 319 v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~ 354 (361)
T 3uem_A 319 VHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLES 354 (361)
T ss_dssp CCSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHTT
T ss_pred CcccCeEEEEECCCCcceeEecCCCCHHHHHHHHHh
Confidence 4445688888665 6788899988777777776654
No 211
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=84.30 E-value=0.13 Score=49.54 Aligned_cols=37 Identities=19% Similarity=0.017 Sum_probs=27.2
Q ss_pred CcccceEEEECCCCcE--EEEecCCCCcccHHHHHHHHhh
Q psy6055 264 VREPYEKFLVGARGYP--VARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 264 IkWNFTKFLIDrdG~V--V~Ry~p~~~P~eLe~dIekLL~ 301 (307)
|+--+|-+++ ++|+. +.+|.+..+.++|.+.|++.+.
T Consensus 429 v~~~Pt~~~~-~~G~~~~~~~~~G~~~~~~l~~~i~~~~~ 467 (504)
T 2b5e_A 429 IEGYPTIVLY-PGGKKSESVVYQGSRSLDSLFDFIKENGH 467 (504)
T ss_dssp CSSSSEEEEE-CCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred ceecCeEEEE-eCCceecceEecCCCCHHHHHHHHHhcCC
Confidence 3334565555 78977 7788888888888888887654
No 212
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=84.01 E-value=0.16 Score=51.51 Aligned_cols=36 Identities=11% Similarity=-0.092 Sum_probs=27.9
Q ss_pred ceEEEECCCCcEEEEecC----CCCcccHHHHHHHHhhhhh
Q psy6055 268 YEKFLVGARGYPVARYDA----SVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p----~~~P~eLe~dIekLL~~~~ 304 (307)
++-+++ ++|+++.++.+ ..+.++|++.|+++|++..
T Consensus 731 Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~~~ 770 (780)
T 3apo_A 731 PSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKLETLQ 770 (780)
T ss_dssp SEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHTTC--
T ss_pred CEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHHHHhh
Confidence 576777 88998887766 5688899999999997653
No 213
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=83.93 E-value=0.69 Score=43.93 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=27.2
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
+| +++-++|+++.+|.+..+.++|.+.|++.+.
T Consensus 77 Pt-l~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 77 PT-LKIFRDGEEAGAYDGPRTADGIVSHLKKQAG 109 (481)
T ss_dssp SE-EEEEETTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred CE-EEEEeCCceeeeecCccCHHHHHHHHHhhcc
Confidence 45 4444899999999999999999999988875
No 214
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=83.77 E-value=0.0088 Score=46.77 Aligned_cols=34 Identities=3% Similarity=-0.270 Sum_probs=25.9
Q ss_pred CCCcccCCCCCCCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 148 GPDRIDGSRLRGPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
|++.++|++++||+++ |+ +||++|.+..|.++.+
T Consensus 1 ~~~~~~la~~~~k~~v-V~F~A~WC~~C~~~~p~~~~~ 37 (106)
T 3kp8_A 1 SPLAVGLAAHLRQIGG-TMYGAYWCPHCQDQKELFGAA 37 (106)
T ss_dssp CHHHHHHHHHHHHHTC-EEEECTTCHHHHHHHHHHGGG
T ss_pred ChHhhHHHHhcCCCEE-EEEECCCCHHHHHHHHHHHHH
Confidence 3456788889999765 56 8999999888876543
No 215
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=83.51 E-value=0.82 Score=40.01 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=18.1
Q ss_pred CCCeEEEEc---CCCCCCcCcchhhhhh
Q psy6055 158 RGPSHRSVG---TDHIVVPSRLPSANVV 182 (307)
Q Consensus 158 KGKVvLVVN---S~Cg~c~qe~p~L~ll 182 (307)
+||++| |+ +||+.|....|.+..+
T Consensus 119 ~~k~vv-V~F~a~wC~~C~~l~p~l~~l 145 (217)
T 2trc_P 119 KVTTIV-VNIYEDGVRGCDALNSSLECL 145 (217)
T ss_dssp TTCEEE-EEEECTTSTTHHHHHHHHHHH
T ss_pred CCcEEE-EEEECCCCccHHHHHHHHHHH
Confidence 578766 55 8999999888777543
No 216
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=82.55 E-value=1.5 Score=35.47 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=35.3
Q ss_pred CCcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 263 DVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 263 ~IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
.|...+|-.|++ +|+.|.|..+...++++.+.++++|.+.+
T Consensus 73 ~V~g~PT~i~f~-~G~ev~Ri~G~~~~~~f~~~L~~~l~~~~ 113 (116)
T 3dml_A 73 PVTFTPTFVLMA-GDVESGRLEGYPGEDFFWPMLARLIGQAE 113 (116)
T ss_dssp CCCSSSEEEEEE-TTEEEEEEECCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEEE-CCEEEeeecCCCCHHHHHHHHHHHHhhcC
Confidence 456667878887 99999999999999999999999987654
No 217
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=80.69 E-value=0.1 Score=39.60 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.9
Q ss_pred CCcEEEEecCCC---CcccHHHHHHHHhh
Q psy6055 276 RGYPVARYDASV---EPSELEPDIVEELM 301 (307)
Q Consensus 276 dG~VV~Ry~p~~---~P~eLe~dIekLL~ 301 (307)
+|+++.++.+.. +.++|++.|+++-.
T Consensus 80 ~g~~v~~~~~~~~~~~~~~l~~~l~~~g~ 108 (116)
T 2e7p_A 80 GGKQIGGCDTVVEKHQRNELLPLLQDAAA 108 (116)
T ss_dssp TTEEEECHHHHHHHHHTTCHHHHHHHTTC
T ss_pred CCEEECChHHHHHHHhCChHHHHHHHccc
Confidence 699998887655 56678888876543
No 218
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=76.05 E-value=2.3 Score=38.69 Aligned_cols=23 Identities=4% Similarity=-0.003 Sum_probs=17.8
Q ss_pred EEEEecCCCCcccHHHHHHHHhh
Q psy6055 279 PVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 279 VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
.+.+|.+..+.+.|.+.|.+.+.
T Consensus 120 ~~~~y~G~r~~~~i~~fl~~~~~ 142 (298)
T 3ed3_A 120 ANEVYSGARTLAPIVDFSLSRIR 142 (298)
T ss_dssp EEEECCSCCSHHHHHHHHHTTCC
T ss_pred cceeecCCcCHHHHHHHHHHhcc
Confidence 57788888888888888877663
No 219
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=67.55 E-value=2.5 Score=35.41 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=22.8
Q ss_pred ceEEEECCCCcEE-EEecCCCCcccHHHHHHHHhh
Q psy6055 268 YEKFLVGARGYPV-ARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 268 FTKFLIDrdG~VV-~Ry~p~~~P~eLe~dIekLL~ 301 (307)
++ ++|-++|+.+ .+|.+....+++...|+.++.
T Consensus 80 Pt-~~~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~ 113 (226)
T 1a8l_A 80 PA-TTITQDGKDFGVRYFGLPAGHEFAAFLEDIVD 113 (226)
T ss_dssp SE-EEEEETTBCCSEEEESCCCTTHHHHHHHHHHH
T ss_pred ce-EEEEcCCceeeEEEeccCcHHHHHHHHHHHHh
Confidence 45 3443677654 788887777788888887765
No 220
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=65.59 E-value=0.79 Score=35.43 Aligned_cols=28 Identities=7% Similarity=-0.228 Sum_probs=21.0
Q ss_pred CCCCCCeEEEEc---C-------CCCCCcCcchhhhhhc
Q psy6055 155 SRLRGPSHRSVG---T-------DHIVVPSRLPSANVVD 183 (307)
Q Consensus 155 S~yKGKVvLVVN---S-------~Cg~c~qe~p~L~llf 183 (307)
.+.+||++| |+ + ||++|....|.++.+.
T Consensus 20 ~~~~~~~v~-v~F~a~~~~~~~~wC~~C~~~~p~l~~~~ 57 (123)
T 1wou_A 20 EQHNGKTIF-AYFTGSKDAGGKSWCPDCVQAEPVVREGL 57 (123)
T ss_dssp HTTTTSEEE-EEEECCBCTTCCBSCHHHHHHHHHHHHHG
T ss_pred HHhCCCEEE-EEEEccCCCCCCCcCHHHHHhhHHHHHHH
Confidence 445688766 55 8 9999999988876543
No 221
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=62.74 E-value=5.1 Score=33.48 Aligned_cols=37 Identities=16% Similarity=-0.065 Sum_probs=29.2
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELMKREE 305 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~~ 305 (307)
+| +++=++|++|.+..+..+.++|++.|+++|+....
T Consensus 93 PT-lilFk~G~~v~~~~G~~~k~~l~~~i~~~l~~~~~ 129 (140)
T 2qgv_A 93 PA-TLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (140)
T ss_dssp SE-EEEEETTEEEEEEESCCCHHHHHHHHHHHHC----
T ss_pred CE-EEEEECCEEEEEEecCCCHHHHHHHHHHHhcCCCC
Confidence 35 56669999999999999999999999999965443
No 222
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=58.94 E-value=1.5 Score=37.68 Aligned_cols=34 Identities=6% Similarity=-0.268 Sum_probs=24.3
Q ss_pred CCCcccCCCCCCCeEEEEc--CCCCCCcCcchhhhh
Q psy6055 148 GPDRIDGSRLRGPSHRSVG--TDHIVVPSRLPSANV 181 (307)
Q Consensus 148 dG~~vdLS~yKGKVvLVVN--S~Cg~c~qe~p~L~l 181 (307)
+...+.+...+||++|++= .||++|.+.+|.|..
T Consensus 75 ~~~~~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~ 110 (216)
T 1eej_A 75 EKEMIVYKAPQEKHVITVFTDITCGYCHKLHEQMAD 110 (216)
T ss_dssp GGGSEEECCTTCCEEEEEEECTTCHHHHHHHTTHHH
T ss_pred hhcCeeecCCCCCEEEEEEECCCCHHHHHHHHHHHH
Confidence 3445566667899877444 899999988877653
No 223
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=58.68 E-value=2.4 Score=32.17 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=15.6
Q ss_pred CCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 276 RGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 276 dG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
+|+++ . ....++++|++.|++++.
T Consensus 73 ~g~~~-~-~~g~~~~~l~~~l~~~~~ 96 (100)
T 1wjk_A 73 NGQFL-M-MHRVNTSKLEKQLRKLSG 96 (100)
T ss_dssp SSSEE-E-ESSCCHHHHHHHHHSSSC
T ss_pred CCEEE-E-ecCCCHHHHHHHHHHHHh
Confidence 57775 2 334777788887776553
No 224
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=56.19 E-value=5.5 Score=31.58 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.4
Q ss_pred CCCCCCcCcchhhhh
Q psy6055 167 TDHIVVPSRLPSANV 181 (307)
Q Consensus 167 S~Cg~c~qe~p~L~l 181 (307)
.||++|.+-.+.|..
T Consensus 38 ~~C~~C~~a~~~L~~ 52 (107)
T 2fgx_A 38 EGCHLCEEMIASLRV 52 (107)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHH
Confidence 799999877666643
No 225
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=48.51 E-value=13 Score=31.15 Aligned_cols=34 Identities=6% Similarity=-0.066 Sum_probs=29.6
Q ss_pred EEECCCCcEEEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 271 FLVGARGYPVARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 271 FLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
|+|+.+|+.+....+..+++++.+.|+++|++.+
T Consensus 173 ~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~~~~~ 206 (208)
T 3kzq_A 173 LVLQINDAYFPIEVDYLSTEPTLKLIRERIIENM 206 (208)
T ss_dssp EEEEETTEEEEECCCSSCSHHHHHHHHHHHHHTC
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHhccc
Confidence 8899999988888888889999999999997653
No 226
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=47.80 E-value=14 Score=30.62 Aligned_cols=33 Identities=12% Similarity=-0.093 Sum_probs=28.7
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
+| +++=+||++|.+..+..+.++|++.|+++|+
T Consensus 91 PT-lilFkdG~~v~~~vG~~~k~~l~~~l~~~l~ 123 (137)
T 2qsi_A 91 PS-LAVVQPERTLGVIAKIQDWSSYLAQIGAMLA 123 (137)
T ss_dssp SE-EEEEECCEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CE-EEEEECCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 35 5555999999999999999999999999884
No 227
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=35.28 E-value=11 Score=25.74 Aligned_cols=16 Identities=13% Similarity=-0.145 Sum_probs=12.7
Q ss_pred CCCCCCcCcchhhhhh
Q psy6055 167 TDHIVVPSRLPSANVV 182 (307)
Q Consensus 167 S~Cg~c~qe~p~L~ll 182 (307)
+||++|.+..|.++.+
T Consensus 9 ~wC~~C~~~~~~l~~~ 24 (77)
T 1ilo_A 9 TGCANCQMLEKNAREA 24 (77)
T ss_dssp SSSSTTHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHH
Confidence 8999999888776543
No 228
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=29.72 E-value=42 Score=27.72 Aligned_cols=34 Identities=9% Similarity=-0.135 Sum_probs=27.4
Q ss_pred ceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 268 YEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
++ |+|..+|+.+..+.+..++++|++.|++++++
T Consensus 178 Pt-~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~~ 211 (216)
T 2in3_A 178 PA-LVVESGTDRYLITTGYRPIEALRQLLDTWLQQ 211 (216)
T ss_dssp SE-EEEEETTEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ce-EEEEECCEEEEeccCCCCHHHHHHHHHHHHHh
Confidence 45 66656798877888888899999999998864
No 229
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=24.17 E-value=81 Score=25.39 Aligned_cols=35 Identities=6% Similarity=-0.088 Sum_probs=24.1
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKRE 304 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~~ 304 (307)
|.-.++ |+|| |+.+- .+. ++++|++.|+++|++.+
T Consensus 153 v~gtPt-~vin--g~~~~--~g~-~~~~l~~~i~~~~~~~~ 187 (193)
T 2rem_A 153 PVGTPT-IVVN--GRYMV--TGH-DFEDTLRITDYLVSRER 187 (193)
T ss_dssp CSSSSE-EEET--TTEEE--CCS-SHHHHHHHHHHHHHHHH
T ss_pred CCCCCe-EEEC--CEEEe--cCC-CHHHHHHHHHHHHHHHH
Confidence 444467 8996 55432 344 78899999999987643
No 230
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=23.56 E-value=62 Score=25.56 Aligned_cols=36 Identities=8% Similarity=-0.108 Sum_probs=24.0
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~ 302 (307)
|.-.|+ |+|| |+.+--..+..+.+++.+.|+.||++
T Consensus 148 v~gTPt-fiIN--Gky~v~~~~~~s~e~~~~~i~~Ll~k 183 (184)
T 4dvc_A 148 LTGVPA-VVVN--NRYLVQGQSAKSLDEYFDLVNYLLTL 183 (184)
T ss_dssp CCSSSE-EEET--TTEEECGGGCSSHHHHHHHHHHHTTC
T ss_pred CCcCCE-EEEC--CEEeeCCcCCCCHHHHHHHHHHHHhC
Confidence 444566 8885 66443334455678899999998864
No 231
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=23.27 E-value=14 Score=31.52 Aligned_cols=23 Identities=4% Similarity=-0.265 Sum_probs=16.8
Q ss_pred CCCeEEEEc--CCCCCCcCcchhhh
Q psy6055 158 RGPSHRSVG--TDHIVVPSRLPSAN 180 (307)
Q Consensus 158 KGKVvLVVN--S~Cg~c~qe~p~L~ 180 (307)
.||++|++= .||++|.+..|.+.
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~~l~ 109 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQQLK 109 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHTTHH
T ss_pred CCCEEEEEEECCCCHhHHHHHHHHH
Confidence 577766444 89999988777654
No 232
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=21.96 E-value=41 Score=29.19 Aligned_cols=37 Identities=5% Similarity=-0.044 Sum_probs=25.8
Q ss_pred CcccceEEEECCCCcEEEEecCCCCcccHHHHHHHHhh
Q psy6055 264 VREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELM 301 (307)
Q Consensus 264 IkWNFTKFLIDrdG~VV~Ry~p~~~P~eLe~dIekLL~ 301 (307)
|.-.++-|+.|.+|++ .++.+..++++|++.|++++.
T Consensus 197 v~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~~~ 233 (241)
T 1v58_A 197 ANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNKLQ 233 (241)
T ss_dssp CCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC---
T ss_pred CCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHHHH
Confidence 5555787777788976 567787888888888776654
No 233
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.24 E-value=42 Score=24.45 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=20.5
Q ss_pred CCCCCCCCceeeecCCCCccccccc
Q psy6055 83 ASSGVSGGSLYVHSSPMCPSCSAAT 107 (307)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (307)
+|||.|+...-+...|.|..|.-..
T Consensus 1 ~~~g~~~~~~~~~~~~~C~~C~~~I 25 (80)
T 2dj7_A 1 GSSGSSGKPIKIRGPSHCAGCKEEI 25 (80)
T ss_dssp CCCCCCCCCCCCSSCSCCTTTCCCC
T ss_pred CCCCcCCCCcCCCCCCCCcCcCCee
Confidence 4788999888888899999997543
No 234
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.86 E-value=1.2e+02 Score=25.71 Aligned_cols=38 Identities=5% Similarity=-0.026 Sum_probs=29.2
Q ss_pred ceEEEECCC---CcEEEEecCCCCcccHHHHHHHHhhhhhh
Q psy6055 268 YEKFLVGAR---GYPVARYDASVEPSELEPDIVEELMKREE 305 (307)
Q Consensus 268 FTKFLIDrd---G~VV~Ry~p~~~P~eLe~dIekLL~~~~~ 305 (307)
+.-.+|+++ ++++.+..|..+++++...+.+.+.+-++
T Consensus 132 P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e~~~~ 172 (178)
T 2ec4_A 132 PLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAMEIFTA 172 (178)
T ss_dssp SEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHHHhhH
Confidence 456778766 48899999999999988888777765443
No 235
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=20.64 E-value=1e+02 Score=22.44 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=24.5
Q ss_pred EECCCCcEEEEecCCCCcccHHHHHHHHhhhh
Q psy6055 272 LVGARGYPVARYDASVEPSELEPDIVEELMKR 303 (307)
Q Consensus 272 LIDrdG~VV~Ry~p~~~P~eLe~dIekLL~~~ 303 (307)
|++.+|+||..=.+-.+..+.+..|+.+-..+
T Consensus 17 Lka~NGevI~sSe~Y~sk~~a~~gI~sVk~na 48 (64)
T 3bid_A 17 LKAANHEIIAQGEGYTSKQNCQHAVDLLKSTT 48 (64)
T ss_dssp EECTTSCEEEECCCBSCHHHHHHHHHHHHTCC
T ss_pred EEeCCCCEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 99999999995455566677888888776544
No 236
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=20.28 E-value=18 Score=29.17 Aligned_cols=28 Identities=14% Similarity=-0.009 Sum_probs=18.6
Q ss_pred ceEEEECCCCcEEEEe-cCCCCcccHHHHH
Q psy6055 268 YEKFLVGARGYPVARY-DASVEPSELEPDI 296 (307)
Q Consensus 268 FTKFLIDrdG~VV~Ry-~p~~~P~eLe~dI 296 (307)
|+ ||+=++|++|.+- ...++.++|++.|
T Consensus 83 Pq-~il~k~G~~v~~~SH~~I~~~~l~~~~ 111 (112)
T 3iv4_A 83 PQ-AFYFVNGEMVWNRDHGDINVSSLAQAE 111 (112)
T ss_dssp SE-EEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred Ce-EEEEECCEEEEEeeccccCHHHHHHhh
Confidence 45 4444999999984 4566666666544
Done!