RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6055
(307 letters)
>gnl|CDD|238207 cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family;
tetrameric selenoenzymes that catalyze the reduction of
a variety of hydroperoxides including lipid peroxidases,
using GSH as a specific electron donor substrate. GSH
peroxidase contains one selenocysteine residue per
subunit, which is involved in catalysis. Different
isoenzymes are known in mammals,which are involved in
protection against reactive oxygen species, redox
regulation of many metabolic processes, peroxinitrite
scavenging, and modulation of inflammatory processes.
Length = 152
Score = 77.6 bits (192), Expect = 1e-17
Identities = 41/162 (25%), Positives = 55/162 (33%), Gaps = 63/162 (38%)
Query: 182 VDPISGRGYKLRRYKGKVLLIV------------------HFRVSGKGFV---------- 213
V I G L +YKGKVLLIV + + +G V
Sbjct: 7 VKDIDGEPVSLSKYKGKVLLIVNVASKCGFTPQYEGLEALYEKYKDRGLVVLGFPCNQFG 66
Query: 214 -------------------PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDL 254
F +F VNG + PL+ YLK+ P
Sbjct: 67 GQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPG------------ 114
Query: 255 KYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDI 296
L D++ + KFLV G V R+ + +P ELE DI
Sbjct: 115 ----LLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKDI 152
>gnl|CDD|223463 COG0386, BtuE, Glutathione peroxidase [Posttranslational
modification, protein turnover, chaperones].
Length = 162
Score = 67.7 bits (166), Expect = 8e-14
Identities = 41/166 (24%), Positives = 55/166 (33%), Gaps = 62/166 (37%)
Query: 182 VDPISGRGYKLRRYKGKVLLIV------------------HFRVSGKGFV----P----- 214
V I G L YKGKVLLIV + + KGF P
Sbjct: 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPCNQFG 69
Query: 215 --------------------KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDL 254
F +F VNG + PL+ YLK+ P G
Sbjct: 70 GQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGG-------- 121
Query: 255 KYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300
D++ + KFLV G V R+ +P ++E I + L
Sbjct: 122 -------KDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160
>gnl|CDD|240248 PTZ00056, PTZ00056, glutathione peroxidase; Provisional.
Length = 199
Score = 46.4 bits (110), Expect = 4e-06
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 215 KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVG 274
K++ F P VNG + LF +LK C + D L+ + + KFLV
Sbjct: 104 KYNFFEPIEVNGENTHELFKFLKANCDS--------MHDENGT-LKA--IGWNFGKFLVN 152
Query: 275 ARGYPVARYDASVEPSELEPDIVEELMKREERE 307
G VA + EP ELE I E L ++ +E
Sbjct: 153 KSGNVVAYFSPRTEPLELEKKIAELLGVKDYQE 185
>gnl|CDD|182585 PRK10606, btuE, putative glutathione peroxidase; Provisional.
Length = 183
Score = 42.5 bits (100), Expect = 7e-05
Identities = 47/175 (26%), Positives = 59/175 (33%), Gaps = 58/175 (33%)
Query: 182 VDPISGRGYKLRRYKGKVLLIVHFRVSGK-GFVPK---------------FDVFG----- 220
V I G L +Y G VLLIV+ V+ K G P+ F V G
Sbjct: 10 VTTIDGEVTTLEKYAGNVLLIVN--VASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQ 67
Query: 221 -----PGP-----------------------VNGASEAPLFTYLKDTCP----PTRIGFT 248
PG VNG PL+ L P P GF
Sbjct: 68 FLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFY 127
Query: 249 EPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303
+ PL D+ +EKFLVG G + R+ + P E IV E +K
Sbjct: 128 ARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTP---EDPIVMESIKL 179
>gnl|CDD|201117 pfam00255, GSHPx, Glutathione peroxidase.
Length = 108
Score = 38.4 bits (90), Expect = 5e-04
Identities = 23/104 (22%), Positives = 31/104 (29%), Gaps = 47/104 (45%)
Query: 181 VVDPISGRGYKLRRYKGKVLLIV------------------HFRVSGKGFV--------- 213
I+G L +Y+GKVLLIV R +G V
Sbjct: 5 SAKDINGEPVPLDQYRGKVLLIVNVASKCGLTPQYTELNELQERYKDRGLVILGFPCNQF 64
Query: 214 --------------------PKFDVFGPGPVNGASEAPLFTYLK 237
F +F VNG + PL+ +LK
Sbjct: 65 GKQEPGSNEEIKYFRPGGYGVTFPIFSKIDVNGENAHPLYKFLK 108
>gnl|CDD|178021 PLN02399, PLN02399, phospholipid hydroperoxide glutathione
peroxidase.
Length = 236
Score = 38.7 bits (90), Expect = 0.002
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKF 271
F +F +F VNG S AP++ +LK GF L DL ++ +EKF
Sbjct: 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAG----GF---LGDL---------IKWNFEKF 205
Query: 272 LVGARGYPVARYDASVEPSELEPDI 296
LV G V RY + P ++E DI
Sbjct: 206 LVDKNGKVVERYPPTTSPFQIEKDI 230
>gnl|CDD|173495 PTZ00256, PTZ00256, glutathione peroxidase; Provisional.
Length = 183
Score = 37.8 bits (88), Expect = 0.002
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 210 KGFVPK-----FDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDV 264
K +V K F +F VNG + ++ YL+ F + + P
Sbjct: 97 KEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSE----LFQNNTNEARQIPWN---- 148
Query: 265 REPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302
+ KFL+ +G V + V P+E+ DI E+L+
Sbjct: 149 ---FAKFLIDGQGKVVKYFSPKVNPNEMIQDI-EKLLN 182
>gnl|CDD|166053 PLN02412, PLN02412, probable glutathione peroxidase.
Length = 167
Score = 36.9 bits (85), Expect = 0.005
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 212 FVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKF 271
F +F +F VNG + APL+ YLK + L ++ + KF
Sbjct: 92 FKAEFPIFDKVDVNGKNTAPLYKYLK----------------AEKGGLFGDAIKWNFTKF 135
Query: 272 LVGARGYPVARYDASVEPSELEPDI 296
LV G V RY + P ++E DI
Sbjct: 136 LVSKEGKVVQRYAPTTSPLKIEKDI 160
>gnl|CDD|220662 pfam10265, DUF2217, Uncharacterized conserved protein (DUF2217).
This is a family of conserved proteins of from 500 - 600
residues found from worms to humans. Its function is not
known.
Length = 515
Score = 29.3 bits (66), Expect = 2.6
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 113 ERVGSRRVSRMERFGGPCGGRSQSTSASPENSGIGGPDRIDGSRLRGPSH 162
E++G+RR R G C R + +S N + G S+ G SH
Sbjct: 48 EQLGTRRPL--SRKIGKCSSRRVRSPSSKPNDTLSGASSKLSSKHSGSSH 95
>gnl|CDD|220289 pfam09552, RE_BstXI, BstXI restriction endonuclease. This family
includes the BstXI (recognises and cleaves
CCANNNNN^NTGG) restriction endonuclease.
Length = 287
Score = 28.8 bits (64), Expect = 3.1
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 260 RNSDVREPYEKFLVGARGYPVARYD 284
RNS V P+E+ + Y
Sbjct: 24 RNSTVLIPFERLEKCKENVNLNNYQ 48
>gnl|CDD|152823 pfam12388, Peptidase_M57, Dual-action HEIGH metallo-peptidase. The
catalytic triad for this family of proteases is HE-H-H,
which in many members is in the sequence motif HEIGH.
Length = 211
Score = 28.7 bits (64), Expect = 3.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 69 RHLGFPSRDSCGFGASSGVSG-GSLYVHSSPMCPSCSA--ATCFSNAE 113
RH + R SCG G + G G G++Y+ +P ++ CFS E
Sbjct: 148 RHTDYFDRSSCGQGGNEGTGGVGAVYIPGTPTGRDNTSIMQACFSGGE 195
>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component
[Posttranslational modification, protein turnover,
chaperones].
Length = 491
Score = 28.8 bits (64), Expect = 3.6
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 137 TSASPENSGIGGPDRIDGSRLRGPSHRSVGTDHIVVPSRLPSANV 181
T+ P NS GGP S P+ G IV P RL S+N
Sbjct: 446 TTGDPSNSTYGGPQTFPNSGN-NPNFNR-GIAGIVPPWRLVSSNT 488
>gnl|CDD|239943 cd04497, hPOT1_OB1_like, hPOT1_OB1_like: A subfamily of OB folds
similar to the first OB fold (OB1) of human protection
of telomeres 1 protein (hPOT1), the single OB fold of
the N-terminal domain of Schizosaccharomyces pombe POT1
(SpPOT1), and the first OB fold of the N-terminal domain
of the alpha subunit (OB1Nalpha) of Oxytricha nova
telomere end binding protein (OnTEBP). POT1 proteins
recognize single-stranded (ss) 3-prime ends of the
telomere. A 3-prime ss overhang is conserved in ciliated
protozoa, yeast, and mammals. SpPOT1 is essential for
telomere maintenance. It binds specifically to the ss
G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1
binds specifically to ss telomeric DNA repeats ending
with the sequence GGTTAG. Deletion of the S. pombe pot1+
gene results in a rapid loss of telomere sequences,
chromosome mis-segregation and chromosome
circularization. hPOT1 is implicated in telomere length
regulation. The hPOT1 monomer consists of two closely
connected OB folds (OB1-OB2) which cooperate to bind
telomeric ssDNA. OB1 makes more extensive contact with
the ssDNA than OB2. OB2 protects the 3' end of the
ssDNA. A second OB fold has not been predicted in S.
pombe POT1. OnTEBP binds the extreme 3-prime end of
telomeric DNA. It is heterodimeric and contains four OB
folds - three in the alpha subunit (two in the
N-terminal domain and one in the C-terminal domain) and
one in the beta subunit. OB1Nalpha, together with the
second OB fold of the N-terminal domain of OnTEBP alpha
subunit and the beta subunit OB fold, forms a deep cleft
that binds ssDNA.
Length = 138
Score = 28.0 bits (63), Expect = 4.0
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 173 PSRLPSANVVDPISGRGYKLRRYKGKVLLIVHFRVS-------GKGFVPKFDVFGPGPVN 225
LP V D I R K++ Y GK I + R S G VP
Sbjct: 63 EESLPIVKVGDIILLRRVKIQSYNGKPQGISNDRGSSWAVFRGDDGVVPIPQQSSKPVEF 122
Query: 226 GASEAPLFTYLK 237
G E P L+
Sbjct: 123 GPEEEPSVEELR 134
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.419
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,843,085
Number of extensions: 1507053
Number of successful extensions: 1069
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1064
Number of HSP's successfully gapped: 21
Length of query: 307
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 210
Effective length of database: 6,635,264
Effective search space: 1393405440
Effective search space used: 1393405440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.8 bits)