RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6055
(307 letters)
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold,
epididymal androgen related protein, struc genomics,
structural genomics consortium; 2.00A {Homo sapiens}
Length = 215
Score = 89.8 bits (223), Expect = 1e-21
Identities = 39/175 (22%), Positives = 61/175 (34%), Gaps = 53/175 (30%)
Query: 180 NVVDPISGRGYKLRRYKGKVLLIV------------------------------------ 203
+ ++Y GK +L V
Sbjct: 39 EAIALNKNEYVSFKQYVGKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQ 98
Query: 204 ----------------HFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGF 247
+ G GFVP F +F G VNG E +F++LK +CP
Sbjct: 99 FGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPS-EI 157
Query: 248 TEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302
+ ++P++ D+R +EKFLVG G PV R+ S ++ DI+ L +
Sbjct: 158 LGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQ 212
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics,
structural genomics consortium, SGC, oxidoreductase;
1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Length = 208
Score = 87.4 bits (217), Expect = 7e-21
Identities = 42/178 (23%), Positives = 57/178 (32%), Gaps = 56/178 (31%)
Query: 181 VVDPISGRGYKLRRYKGKVLLIV--------------------------HFRV------- 207
G L +GKVLLI V
Sbjct: 31 ARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ 90
Query: 208 --------------------SGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCP---PTR 244
G GF P F +F VNGA PLF +L++ P
Sbjct: 91 FGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDA 150
Query: 245 IGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302
+ + P+ +DV +EKFLVG G P+ RY + ++EPDI L +
Sbjct: 151 TALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 208
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort
oxidoreductase, secreted, selenium, selenocysteine;
1.85A {Homo sapiens}
Length = 207
Score = 86.3 bits (214), Expect = 2e-20
Identities = 39/164 (23%), Positives = 61/164 (37%), Gaps = 53/164 (32%)
Query: 191 KLRRYKGKVLLIV------------------HFRVSGKGFV------------------- 213
++Y GK +L V ++ G V
Sbjct: 32 PFKQYAGKYVLFVNVASYGGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSE 91
Query: 214 ---------------PKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEP 258
P F +F G VNG E +T+LK++CPPT L +EP
Sbjct: 92 ILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTS-ELLGTSDRLFWEP 150
Query: 259 LRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMK 302
++ D+R +EKFLVG G P+ R+ S ++ DI+ + +
Sbjct: 151 MKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRR 194
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 73.8 bits (182), Expect = 4e-16
Identities = 40/167 (23%), Positives = 60/167 (35%), Gaps = 64/167 (38%)
Query: 185 ISGRGYKLRRYKGKVLLIV-------------------HFRVSGKGFV----P------- 214
I+G L +Y+G V LIV H R+ GKG P
Sbjct: 19 INGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQ 78
Query: 215 ------------------KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKY 256
+FD+F VNG+ L+ +LK
Sbjct: 79 EPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHG-------------- 124
Query: 257 EPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKR 303
++++ + KFLV +G PV RY + P ++E DI+E L K+
Sbjct: 125 --TLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEKK 169
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione,
dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Length = 190
Score = 74.2 bits (183), Expect = 4e-16
Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 63/164 (38%)
Query: 185 ISGRGYKLRRYKGKVLLIV-------------------HFRVSGKGFV----P------- 214
+ Y L ++KG LLI + + +GF P
Sbjct: 36 ADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQ 95
Query: 215 ------------------KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKY 256
+F + VNG + PL+ Y+K T P G
Sbjct: 96 EPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKP----GI--------- 142
Query: 257 EPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300
L+ ++ + FL+ G PV R+ ++E ++ L
Sbjct: 143 --LKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase,
peroxidase, redox-ACT center; 2.02A {Saccharomyces
cerevisiae}
Length = 171
Score = 73.4 bits (181), Expect = 5e-16
Identities = 36/167 (21%), Positives = 54/167 (32%), Gaps = 62/167 (37%)
Query: 185 ISGRGYKLRRYKGKVLLIV------------------HFRVSGKGFV----P-------- 214
G+ + + KGKV+LIV + R +GF P
Sbjct: 20 KKGQPFPFDQLKGKVVLIVNVASKCGFTPQYKELEALYKRYKDEGFTIIGFPCNQFGHQE 79
Query: 215 -----------------KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYE 257
F + VNG +E P++ +LK
Sbjct: 80 PGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKS---------------G 124
Query: 258 PLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKRE 304
L ++ +EKFLV +G RY + +PS L I E L + E
Sbjct: 125 MLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLKEVE 171
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA)
sandwich, glutaredoxin fold, oxidoreductase; 1.41A
{Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Length = 187
Score = 73.8 bits (182), Expect = 5e-16
Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 70/198 (35%)
Query: 157 LRGPSHRSVGTDHIVVPSRLPSA------NVVDPISGRGYKLRRYKGKVLLIV------- 203
+RG H ++ +A V+D + Y L ++KG LLI
Sbjct: 1 MRGSHHHHHHGSLRSSRKKMSAASSIFDFEVLD-ADHKPYNLVQHKGSPLLIYNVASKCG 59
Query: 204 ------------HFRVSGKGFV----P-------------------------KFDVFGPG 222
+ + +GF P +F +
Sbjct: 60 YTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKI 119
Query: 223 PVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYEPLRNSDVREPYEKFLVGARGYPVAR 282
VNG + PL+ Y+K T P G L ++ + FL+ G PV R
Sbjct: 120 NVNGENAHPLYEYMKKTKP----GI-----------LATKAIKWNFTSFLIDRDGVPVER 164
Query: 283 YDASVEPSELEPDIVEEL 300
+ ++E ++ L
Sbjct: 165 FSPGASVKDIEEKLIPLL 182
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A
{Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Length = 170
Score = 72.2 bits (178), Expect = 1e-15
Identities = 36/169 (21%), Positives = 48/169 (28%), Gaps = 74/169 (43%)
Query: 185 ISGRGYKLRRYKGKVLLIV-------------------HFRVSGKGFV----P------- 214
L +KGKVLLIV + + +G P
Sbjct: 20 AKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEE 79
Query: 215 ------------------KFDVFGPGPVNGASEAPLFTYLKDTCP---PTRIG--FTEPL 251
+F +F VNG + +PL+ +LK I F
Sbjct: 80 EPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFA--- 136
Query: 252 TDLKYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300
KFLV G V RY + P LE DI + L
Sbjct: 137 ------------------KFLVNKDGQVVDRYYPTTSPLSLERDIKQLL 167
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane,
oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB:
3cyn_A
Length = 180
Score = 71.9 bits (177), Expect = 2e-15
Identities = 29/173 (16%), Positives = 43/173 (24%), Gaps = 72/173 (41%)
Query: 185 ISGRGYKLRRYKGKVLLIV-------------------HFRVSGKGFV----P------- 214
GR L +YKGKV L+V H F P
Sbjct: 26 AKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGES 85
Query: 215 ------------------KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIG--FTEPLTDL 254
F +F + G+ P F +L D+ F
Sbjct: 86 EPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDS-SKKEPRWNFW------ 138
Query: 255 KYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEELMKREERE 307
K+LV G V + + PDI + + ++
Sbjct: 139 ---------------KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVIIKK 176
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase;
GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Length = 185
Score = 71.9 bits (177), Expect = 2e-15
Identities = 32/163 (19%), Positives = 48/163 (29%), Gaps = 61/163 (37%)
Query: 185 ISGRGYKLRRYKGKVLLIV-------------------HFRVSGKGFV----P------- 214
I G L +Y+G V ++ H R + G P
Sbjct: 37 IDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 96
Query: 215 -----------------KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYE 257
KFD+F VNG PL+ ++K G
Sbjct: 97 EPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK--GIL--------- 145
Query: 258 PLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300
+ ++ + KFL+ G V RY EP +E D+
Sbjct: 146 ---GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 185
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX,
phospholipid hydroperoxidase, struc genomics, structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 181
Score = 70.8 bits (174), Expect = 5e-15
Identities = 30/166 (18%), Positives = 41/166 (24%), Gaps = 72/166 (43%)
Query: 185 ISGRGYKLRRYKGKVLLIV-------------------HFRVSGKGFV----P------- 214
I G+ L +Y+G V L+V + F P
Sbjct: 37 IRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ 96
Query: 215 ------------------KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIG--FTEPLTDL 254
F +F V G P F YL T F
Sbjct: 97 EPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQT-SGKEPTWNFW------ 149
Query: 255 KYEPLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300
K+LV G V +D +V E+ P I +
Sbjct: 150 ---------------KYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase
(GPX4); human GPX4, selenoprotein, thioredoxin-fold,
anti-oxidatve defense system; 1.55A {Homo sapiens}
Length = 183
Score = 70.4 bits (173), Expect = 8e-15
Identities = 32/163 (19%), Positives = 48/163 (29%), Gaps = 61/163 (37%)
Query: 185 ISGRGYKLRRYKGKVLLIV-------------------HFRVSGKGFV----P------- 214
I G L +Y+G V ++ H R + G P
Sbjct: 35 IDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ 94
Query: 215 -----------------KFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLKYE 257
KFD+F VNG PL+ ++K G
Sbjct: 95 EPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK--GIL--------- 143
Query: 258 PLRNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300
+ ++ + KFL+ G V RY EP +E D+
Sbjct: 144 ---GNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 183
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 22/174 (12%), Positives = 43/174 (24%), Gaps = 67/174 (38%)
Query: 170 IVVPSRLPSANVVDPISGRGYKLRRYKGKVLLIVHFRVSGKGFVPK--FDVFG------- 220
I++ +R V D +S + + H P +
Sbjct: 268 ILLTTR--FKQVTDFLSAATTT-------HISLDHHS---MTLTPDEVKSLLLKYLDCRP 315
Query: 221 ---PGPVNGASEA----PLF-----TYLKDTCPPTRIGF-----TEPLT---DLKYEPLR 260
P E P ++D + LT + L
Sbjct: 316 QDLP------REVLTTNPRRLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 261 NSDVREPYEKFLVGARGYPVARYDASVEPSELE-----------PDIVEELMKR 303
++ R+ +++ V +P A + L +V +L K
Sbjct: 368 PAEYRKMFDRLSV----FP---PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 28.2 bits (62), Expect = 3.7
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 254 LKYEPLRNSDVREPYEKFLVGARGYPV 280
LK P +N + + FL R Y V
Sbjct: 47 LKLHPDKNPNNPNAHGDFLKINRAYEV 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 4.6
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 16/73 (21%)
Query: 175 RLPSANVVDPISGRGYKLRRYKGKVL-----LI----VHFRVSGKGFVPKFDVFGPGPVN 225
++P V D G LR G + I V + + + FGPG +
Sbjct: 456 QIP---VYDTFDGSD--LRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 226 GASEAPLFTYLKD 238
G L KD
Sbjct: 511 GLG--VLTHRNKD 521
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor,
endocytosis, phosphoprotein; HET: 1PG; 2.80A
{Saccharomyces cerevisiae}
Length = 328
Score = 27.4 bits (60), Expect = 6.7
Identities = 13/67 (19%), Positives = 21/67 (31%)
Query: 36 LTSLTSRHTSGGVGTPRHTSAGLGTPPVRFGTSRHLGFPSRDSCGFGASSGVSGGSLYVH 95
+ S H PR + P + + G+S+ + G SL+ H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASERPVSTLSSQITGELRELNPQATGSSTSLVGQSLFQH 60
Query: 96 SSPMCPS 102
SS
Sbjct: 61 SSLDTSQ 67
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 27.6 bits (62), Expect = 7.1
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 21/56 (37%)
Query: 149 PDRIDGSRLRGPSHRSVGTDHI----------VVPSRLPSANVVDPISGRGYKLRR 194
+ ++G + S+ DH +VPS N G GY R
Sbjct: 324 VEELEGIVVPLEKVYSL-ADHTRCILFMLGDGLVPS-----NA-----GAGYLARL 368
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein,
NPPSFA, national project protein structural and
functional analyses; 1.60A {Geobacillus kaustophilus}
Length = 196
Score = 26.7 bits (59), Expect = 8.7
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 174 SRLPSANVVDPISGRGYKLRRYKGKVLLIVHF 205
+ P + + I G +L K ++ F
Sbjct: 22 KQAPPFALTNVIDGNVVRLEDVKSDAATVIMF 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.419
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,779,300
Number of extensions: 288356
Number of successful extensions: 572
Number of sequences better than 10.0: 1
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 34
Length of query: 307
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 214
Effective length of database: 4,105,140
Effective search space: 878499960
Effective search space used: 878499960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.4 bits)