RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6055
         (307 letters)



>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 184

 Score = 69.6 bits (169), Expect = 6e-15
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 203 VHFRVSGKGFVPKFDVFGPGPVNGASEAPLFTYLKDTCPPTRIGFTEPLTDLK---YEPL 259
           + +   G GF P F +F    VNGA   PLF +L++  P      T  +TD K   + P+
Sbjct: 83  LKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPV 142

Query: 260 RNSDVREPYEKFLVGARGYPVARYDASVEPSELEPDIVEEL 300
             +DV   +EKFLVG  G P+ RY    +  ++EPDI   L
Sbjct: 143 CRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 183



 Score = 28.7 bits (63), Expect = 0.63
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 180 NVVDPISGRGYKLRRYKGKVLLIV 203
           +      G    L   +GKVLLI 
Sbjct: 7   SARPLAGGEPVSLGSLRGKVLLIE 30


>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 140

 Score = 25.5 bits (56), Expect = 5.0
 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 20/70 (28%)

Query: 159 GPSHRSVGTDHIVV-------------------PSRLPS-ANVVDPISGRGYKLRRYKGK 198
            P + S GTD+  V                      LP      D +     K++ YK +
Sbjct: 28  KPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVYKKE 87

Query: 199 VLLIVHFRVS 208
              I     +
Sbjct: 88  TQGITSSGFA 97


>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
           {Clostridium perfringens [TaxId: 1502]}
          Length = 426

 Score = 25.9 bits (57), Expect = 7.0
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 17/62 (27%)

Query: 21  SPYTPLRPANNYCESLTSLTSRHTSGGVGTPRHTSAGLGTPPVRFGTSRHLGFPSRDSCG 80
           S Y+  R   +  ++L+                   GLGTP    G +     PS D+C 
Sbjct: 181 SDYSFQRLNCSVTDTLSH-----------------EGLGTPVTYTGMTWSGFRPSDDACE 223

Query: 81  FG 82
           +G
Sbjct: 224 YG 225


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,170,687
Number of extensions: 55632
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 6
Length of query: 307
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,240,546
Effective search space: 275401212
Effective search space used: 275401212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)