BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6056
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80Z37|TOPRS_MOUSE E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1
SV=1
Length = 1033
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 42 TSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCK 89
SP S+CPICL +N SY D CLH+FCF C+++WS+ +E LCK
Sbjct: 98 ASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAEC--PLCK 143
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1
SV=1
Length = 1045
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 42 TSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCK 89
SP S+CPICL +N SY D CLH+FCF C+++WS+ +E LCK
Sbjct: 97 ASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQEWSKNKAEC--PLCK 142
>sp|Q9V8P9|TOPRS_DROME E3 ubiquitin-protein ligase Topors OS=Drosophila melanogaster
GN=Topors PE=1 SV=1
Length = 1038
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93
SP C ICL + +TD+C+H+FCF C+ +WS+I E C + KQ
Sbjct: 97 SPPPNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPE-----CPLCKQ 142
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2 (strain
K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLLFASATECLQY 107
C ICL + + CLH FC CI++W + + LCK Q L+ ++ EC +
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRW--LEGRPTCPLCKAPVQSLIHSVASDECFEE 70
Query: 108 INV 110
I V
Sbjct: 71 IPV 73
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1 (strain
Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLLFASATECLQY 107
C ICL + + CLH FC CI++W + + LCK Q L+ ++ EC +
Sbjct: 13 CCICLDAITGAARALPCLHAFCLACIRRW--LEGRPTCPLCKAPVQSLIHSVASDECFEE 70
Query: 108 INV 110
I V
Sbjct: 71 IPV 73
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKM 90
RCPICL +N S CLH FC++CI +W I + LCK+
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRW--IRQNPTCPLCKV 48
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKM 90
RCPICL +N S CLH FC++CI +W I + LCK+
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRW--IRQNPTCPLCKV 48
>sp|P09309|IE61_VZVD E3 ubiquitin-protein ligase IE61 OS=Varicella-zoster virus
(strain Dumas) GN=61 PE=1 SV=1
Length = 467
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96
C IC+ +++ T CLH+FCF+CI+ W+ S + LC+ Q +L
Sbjct: 19 CTICMSTVSDLGKTMPCLHDFCFVCIRAWTSTSVQC--PLCRCPVQSIL 65
>sp|P29129|ICP0_SUHVF E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain
Indiana-Funkhauser / Becker) GN=EP0 PE=2 SV=1
Length = 410
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISS 81
CPICL V + T C+H+FC CI++W+ S+
Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRWTLTST 79
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL-----LFASAT 102
CPIC+ +L + D C H FC CI Q + S + LCK+S + L AS
Sbjct: 16 CPICMEILQDPVTID-CGHNFCLQCISQVGKTSEKIQCPLCKLSVNKNTFRPNKLLASLA 74
Query: 103 ECLQYINVYDI 113
E +Q ++ DI
Sbjct: 75 EKIQSMDPADI 85
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLLFASATEC 104
T CPIC L R +T C H +C+ C+ W + S C +Q+L S
Sbjct: 82 TLECPICTEALQ-RPFTTHCGHTYCYECLLNWLKESKS-----CPTCRQKLYTQPSPA-- 133
Query: 105 LQYINVYDIMILQVNTSTFKGLFGVNIGRIDRLHLFTF-GHFQSRKTRVP 153
Y+ VY+IM + +++ L G+N + F G F+ + P
Sbjct: 134 --YL-VYEIMNVVAASNSGFPLVGINENPAKKQKEVLFDGMFKQEDSHYP 180
>sp|P0CE10|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic
OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1
Length = 1787
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 18 EIQQASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWS 77
E++Q +K N+ E + G++P CPICL +++ + C H FC C+ +
Sbjct: 1531 EMRQEVQKMVNELAREKSALGEKPDEIELECPICLSEVDDGYSLEGCSHLFCKACLLEQF 1590
Query: 78 QISS---ESSPALC 88
+ S ++ P LC
Sbjct: 1591 EASMRNFDAFPILC 1604
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2
SV=1
Length = 336
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 31 PSEDDSDG-DRPTSPTS-----RCPICLLVLNNRSYTDTCLHEFCFLCI 73
P E +DG + SP S CPICL +L N T CLH FC CI
Sbjct: 28 PQEAITDGLEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCI 76
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2
SV=1
Length = 336
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCI 76
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1
SV=1
Length = 336
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCI 76
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1
SV=1
Length = 336
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCI 76
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2
PE=2 SV=1
Length = 308
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 51 CPICLDMLKNTMTTKECLHRFCADCI 76
>sp|Q99590|SCAFB_HUMAN Protein SCAF11 OS=Homo sapiens GN=SCAF11 PE=1 SV=2
Length = 1463
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 43 SPTSRCPICL--LVLNNRSYTDTCLHEFCFLCIKQWSQI 79
S RCPICL L+ + ++C H FC CI +W++
Sbjct: 36 SEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWAET 74
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus
GN=Phrf1 PE=1 SV=2
Length = 1682
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 48 CPICLLVLNNRSY--TDTCLHEFCFLCIKQWSQ 78
CPICL +++ +TC H FC CI +WS+
Sbjct: 109 CPICLNAFRDQAVGTPETCAHYFCLDCIIEWSR 141
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus
norvegicus GN=Phrf1 PE=1 SV=2
Length = 1685
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 48 CPICLLVLNNRSY--TDTCLHEFCFLCIKQWSQ 78
CPICL +++ +TC H FC CI +WS+
Sbjct: 109 CPICLNAFRDQAVGTPETCAHYFCLDCIIEWSR 141
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 47 CPICLDMLKNTMTTKECLHRFCSDCI 72
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCI 73
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCI 73
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCI 73
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCI 73
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1
PE=3 SV=2
Length = 406
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 48 CPICLDMLKNTMTTKECLHRFCSDCI 73
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1
PE=3 SV=1
Length = 377
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 19 CPICLDMLKNTMTTKECLHRFCSDCI 44
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 19 CPICLDMLKNTMTTKECLHRFCSDCI 44
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 19 CPICLDMLKNTMTTKECLHRFCSDCI 44
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L N T CLH FC CI
Sbjct: 19 CPICLDMLKNTMTTKECLHRFCSDCI 44
>sp|Q9FKA7|ORTH1_ARATH E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana
GN=ORTH1 PE=1 SV=1
Length = 617
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 16 LPEIQQASKKQKNDNPSEDDS-DGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIK 74
L E ++A K+QK + DD D + C IC+ L R T C H FC C +
Sbjct: 96 LTEAEKAKKRQKLMSGGGDDGVDEEEKKKLEIFCSICIQ-LPERPITTPCGHNFCLKCFE 154
Query: 75 QWSQISSESSPALCK 89
+W+ + + +C+
Sbjct: 155 KWAVGQGKLTCMICR 169
>sp|Q96A37|RN166_HUMAN RING finger protein 166 OS=Homo sapiens GN=RNF166 PE=2 SV=1
Length = 237
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 22 ASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISS 81
AS +Q+ P + GD CPICL V + +C H FC C++ Q+ S
Sbjct: 9 ASAQQRQ--PPAGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPS 66
Query: 82 ESSPALCKM 90
P LC++
Sbjct: 67 PLCP-LCRL 74
>sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 22 ASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISS 81
AS +Q+ P + GD CPICL V + +C H FC C++ Q+ S
Sbjct: 9 ASAQQRQ--PPAGPAGGDSGLEAQFSCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPS 66
Query: 82 ESSPALCKM 90
P LC++
Sbjct: 67 PLCP-LCRL 74
>sp|Q3U9F6|RN166_MOUSE RING finger protein 166 OS=Mus musculus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 22 ASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISS 81
AS +Q+ P + GD CPICL V + +C H FC C++ Q+ S
Sbjct: 9 ASAQQRQ--PPAGPAGGDSGLEAQFSCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPS 66
Query: 82 ESSPALCKM 90
P LC++
Sbjct: 67 PLCP-LCRL 74
>sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana
GN=RING1A PE=1 SV=2
Length = 522
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPA 86
+CPICL ++ CLH FC CI + ++ + PA
Sbjct: 135 QCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPA 174
>sp|Q5REG4|DTX3_PONAB Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii GN=DTX3
PE=2 SV=1
Length = 347
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 46 SRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ---------RLL 96
S CPICL + N + C H FC CI + Q+ ++ P + Q R+L
Sbjct: 162 STCPICLGEIQNAKTLEKCRHSFCEGCITRALQV-KKACPMCGRFYGQLVGNQPQNGRML 220
Query: 97 LFASATECLQYINVYDIMILQ 117
+ AT L Y +++Q
Sbjct: 221 VSKDATLLLPSYEKYGTIVIQ 241
>sp|Q8N9I9|DTX3_HUMAN Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens GN=DTX3
PE=1 SV=2
Length = 347
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 46 SRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ---------RLL 96
S CPICL + N + C H FC CI + Q+ ++ P + Q R+L
Sbjct: 162 STCPICLGEIQNAKTLEKCRHSFCEGCITRALQV-KKACPMCGRFYGQLVGNQPQNGRML 220
Query: 97 LFASATECLQYINVYDIMILQ 117
+ AT L Y +++Q
Sbjct: 221 VSKDATLLLPSYEKYGTIVIQ 241
>sp|Q9NV58|RN19A_HUMAN E3 ubiquitin-protein ligase RNF19A OS=Homo sapiens GN=RNF19A PE=1
SV=3
Length = 838
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 48 CPICLLVLNNRSYTD--TCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLLFASATECL 105
CP+CLL + + D TC H C C++Q+ +I ++S+ R+ + S EC
Sbjct: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRI---------EISESRVNI--SCPECT 180
Query: 106 QYINVYDIMIL 116
+ N +DI ++
Sbjct: 181 ERFNPHDIRLI 191
>sp|Q4TU14|RHF1A_ARATH E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana
GN=RHF1A PE=1 SV=1
Length = 371
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 32 SEDDSDGDRPTSPTSRCPICL--LVLNNRSYTDTCLHEFCFLCIKQWSQISSE 82
S+DD++ D C ICL L + S +C HE+ CI +WSQ S E
Sbjct: 36 SDDDNNTD------DACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWSQRSKE 82
>sp|Q80V91|DTX3_MOUSE Probable E3 ubiquitin-protein ligase DTX3 OS=Mus musculus GN=Dtx3
PE=2 SV=2
Length = 347
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ---------RLLLF 98
CPICL + N + C H FC CI + Q+ ++ P + Q R+L+
Sbjct: 164 CPICLGEIQNAKTLEKCRHSFCEGCITRALQV-KKACPMCGRFYGQLVGNQPQNGRMLVS 222
Query: 99 ASATECLQYINVYDIMILQ 117
AT L Y +++Q
Sbjct: 223 KDATLLLPSYEKYGTIVIQ 241
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 20 QQASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDT--CLHEFCFLCIKQWS 77
+Q ++K+ + G SR P+C L L R + C H FC+ CI W
Sbjct: 242 RQRARKEWRLHRGLSHRRGSLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWC 301
Query: 78 QISSESSPALCK 89
SS++ LC+
Sbjct: 302 --SSKAECPLCR 311
>sp|P43254|COP1_ARATH E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1
PE=1 SV=2
Length = 675
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 19 IQQASKKQKNDNPSEDDSDGDRPT-SPTSRCPICLLVLNNRSYTDTCLHEFCFLCI 73
+ + + + +ND+ S+ P CPIC+ ++ + ++ C H FC++CI
Sbjct: 22 VGEGANRHENDDGGSGGSEIGAPDLDKDLLCPICMQIIKD-AFLTACGHSFCYMCI 76
>sp|Q5R7T5|RNF41_PONAB E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2
SV=1
Length = 317
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
CPIC VL C H FC CI QW
Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQW 46
>sp|Q8BH75|RNF41_MOUSE E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1
SV=1
Length = 317
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
CPIC VL C H FC CI QW
Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQW 46
>sp|Q9H4P4|RNF41_HUMAN E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1
SV=2
Length = 317
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
CPIC VL C H FC CI QW
Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQW 46
>sp|Q3KPU8|RN166_XENLA RING finger protein 166 OS=Xenopus laevis GN=rnf166 PE=2 SV=1
Length = 241
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKM 90
CPICL V +C H FC C++ Q+SS P LC+M
Sbjct: 37 CPICLEVYYKPVAIGSCGHTFCGECLQPCLQVSSPLCP-LCRM 78
>sp|Q5FWL3|RNF41_XENLA E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2
SV=1
Length = 317
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
CPIC VL C H FC CI QW
Sbjct: 18 CPICSGVLEEPVQAPHCEHAFCNACITQW 46
>sp|Q8TDB6|DTX3L_HUMAN E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens GN=DTX3L PE=1
SV=1
Length = 740
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 17/68 (25%)
Query: 25 KQKNDNPSEDDSDGDRPTSPTSR-----------------CPICLLVLNNRSYTDTCLHE 67
K+ ++ P + DSD + SP + C IC+ ++N+ C HE
Sbjct: 521 KEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTISNKKVLPKCKHE 580
Query: 68 FCFLCIKQ 75
FC CI +
Sbjct: 581 FCAPCINK 588
>sp|P50636|RN19A_MOUSE E3 ubiquitin-protein ligase RNF19A OS=Mus musculus GN=Rnf19a PE=1
SV=2
Length = 840
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 48 CPICLLVLNNRSYTD--TCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLLFASATECL 105
CP+CLL + + D TC H C C++Q+ +I ++S+ R+ + S EC
Sbjct: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRI---------EISESRVNI--SCPECT 180
Query: 106 QYINVYDIMIL 116
+ N +DI ++
Sbjct: 181 ERFNPHDIRLI 191
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster
GN=Sce PE=1 SV=1
Length = 435
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCI 73
CPICL +L T CLH FC CI
Sbjct: 46 CPICLDMLKKTMTTKECLHRFCSDCI 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,493,250
Number of Sequences: 539616
Number of extensions: 1942642
Number of successful extensions: 7510
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 7407
Number of HSP's gapped (non-prelim): 222
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)