Query psy6056
Match_columns 153
No_of_seqs 181 out of 1420
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 01:23:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2djb_A Polycomb group ring fin 99.6 1.4E-15 4.7E-20 97.7 5.5 53 40-97 10-62 (72)
2 1chc_A Equine herpes virus-1 r 99.6 1E-15 3.4E-20 97.0 3.7 60 44-108 4-63 (68)
3 2csy_A Zinc finger protein 183 99.5 1.5E-14 5.1E-19 94.8 5.7 51 41-97 11-61 (81)
4 2ea6_A Ring finger protein 4; 99.5 1.2E-14 4.1E-19 91.8 4.3 52 40-96 10-67 (69)
5 2ecy_A TNF receptor-associated 99.5 1.8E-14 6.2E-19 90.9 5.1 54 39-97 9-62 (66)
6 2yur_A Retinoblastoma-binding 99.5 1.8E-14 6.1E-19 93.1 5.0 55 39-96 9-63 (74)
7 2d8t_A Dactylidin, ring finger 99.5 8.5E-15 2.9E-19 93.7 3.1 51 41-97 11-61 (71)
8 2kiz_A E3 ubiquitin-protein li 99.5 3.2E-14 1.1E-18 90.3 5.7 51 42-97 11-63 (69)
9 3ng2_A RNF4, snurf, ring finge 99.5 1.1E-14 3.7E-19 92.7 3.0 51 42-97 7-63 (71)
10 2ysl_A Tripartite motif-contai 99.5 3.8E-14 1.3E-18 90.7 5.2 56 39-97 14-69 (73)
11 2ect_A Ring finger protein 126 99.5 3.2E-14 1.1E-18 92.4 4.3 52 41-97 11-64 (78)
12 3ztg_A E3 ubiquitin-protein li 99.5 4.5E-14 1.6E-18 94.4 5.0 54 40-96 8-61 (92)
13 1iym_A EL5; ring-H2 finger, ub 99.5 2E-14 7E-19 87.2 2.9 49 43-96 3-54 (55)
14 1t1h_A Gspef-atpub14, armadill 99.5 2.5E-14 8.6E-19 92.9 3.4 52 41-97 4-55 (78)
15 2ep4_A Ring finger protein 24; 99.5 6.7E-14 2.3E-18 90.0 5.3 52 41-97 11-64 (74)
16 2ecw_A Tripartite motif-contai 99.5 1.4E-13 4.8E-18 90.0 6.5 57 40-97 14-71 (85)
17 2ysj_A Tripartite motif-contai 99.4 1.5E-13 5.2E-18 85.7 6.1 50 39-91 14-63 (63)
18 2kr4_A Ubiquitin conjugation f 99.4 1.2E-13 4.3E-18 91.7 5.7 52 40-97 9-60 (85)
19 2ecv_A Tripartite motif-contai 99.4 2.1E-13 7.1E-18 89.2 6.4 57 40-97 14-71 (85)
20 3lrq_A E3 ubiquitin-protein li 99.4 4.2E-14 1.5E-18 96.4 2.7 51 43-97 20-70 (100)
21 4ayc_A E3 ubiquitin-protein li 99.4 3.3E-14 1.1E-18 102.2 2.2 47 45-97 53-99 (138)
22 2egp_A Tripartite motif-contai 99.4 3.1E-14 1.1E-18 92.4 1.8 57 40-97 7-65 (79)
23 2ecm_A Ring finger and CHY zin 99.4 8.3E-14 2.8E-18 84.4 3.6 48 44-96 4-54 (55)
24 2xeu_A Ring finger protein 4; 99.4 4.6E-14 1.6E-18 87.9 2.4 49 44-97 2-56 (64)
25 2ckl_A Polycomb group ring fin 99.4 7.1E-14 2.4E-18 96.3 3.0 50 43-97 13-62 (108)
26 2ct2_A Tripartite motif protei 99.4 2.6E-13 9E-18 89.6 5.4 55 40-97 10-68 (88)
27 1x4j_A Ring finger protein 38; 99.4 8.1E-14 2.8E-18 90.0 2.8 51 42-97 20-72 (75)
28 2y43_A E3 ubiquitin-protein li 99.4 1.1E-13 3.7E-18 93.9 3.3 50 43-97 20-69 (99)
29 2ecn_A Ring finger protein 141 99.4 5.5E-14 1.9E-18 89.4 1.6 50 41-97 11-60 (70)
30 1wgm_A Ubiquitin conjugation f 99.4 3.7E-13 1.3E-17 91.8 5.6 53 39-97 16-69 (98)
31 2ecj_A Tripartite motif-contai 99.4 3.1E-13 1.1E-17 82.6 4.7 49 40-91 10-58 (58)
32 2ecl_A Ring-box protein 2; RNF 99.4 1.3E-13 4.4E-18 90.7 3.0 49 44-97 14-76 (81)
33 2ckl_B Ubiquitin ligase protei 99.4 1.4E-13 4.8E-18 101.5 2.9 51 42-96 51-101 (165)
34 2l0b_A E3 ubiquitin-protein li 99.4 2.2E-13 7.5E-18 91.3 3.1 49 43-97 38-89 (91)
35 1g25_A CDK-activating kinase a 99.4 2.7E-13 9.2E-18 85.1 3.2 49 45-97 3-55 (65)
36 2kre_A Ubiquitin conjugation f 99.4 3.5E-13 1.2E-17 92.2 4.0 52 40-97 24-75 (100)
37 1v87_A Deltex protein 2; ring- 99.4 5.6E-13 1.9E-17 92.3 4.9 53 45-97 25-94 (114)
38 3hct_A TNF receptor-associated 99.3 5.3E-13 1.8E-17 93.4 4.4 54 39-97 12-65 (118)
39 3fl2_A E3 ubiquitin-protein li 99.3 3.9E-13 1.3E-17 94.7 3.6 50 43-97 50-99 (124)
40 3l11_A E3 ubiquitin-protein li 99.3 2E-13 7E-18 94.9 -0.1 52 41-97 11-62 (115)
41 1e4u_A Transcriptional repress 99.3 3E-12 1E-16 83.9 5.1 51 42-97 8-62 (78)
42 4ap4_A E3 ubiquitin ligase RNF 99.3 7.1E-13 2.4E-17 93.3 2.1 49 43-97 5-60 (133)
43 3dpl_R Ring-box protein 1; ubi 99.3 1.5E-12 5.2E-17 90.0 3.4 48 44-96 36-100 (106)
44 1jm7_A BRCA1, breast cancer ty 99.3 1.7E-12 5.6E-17 89.4 3.5 50 45-97 21-70 (112)
45 1z6u_A NP95-like ring finger p 99.3 1.8E-12 6E-17 94.7 3.6 50 43-97 76-125 (150)
46 1rmd_A RAG1; V(D)J recombinati 99.3 2E-12 6.8E-17 90.0 3.3 50 43-97 21-70 (116)
47 3knv_A TNF receptor-associated 99.2 1.4E-12 4.9E-17 94.3 1.5 51 40-95 26-76 (141)
48 2vje_A E3 ubiquitin-protein li 99.2 2.2E-12 7.4E-17 81.3 2.0 52 43-99 6-59 (64)
49 2yu4_A E3 SUMO-protein ligase 99.2 5E-12 1.7E-16 85.3 3.7 53 42-94 4-59 (94)
50 1jm7_B BARD1, BRCA1-associated 99.2 2.2E-12 7.5E-17 90.1 1.6 47 43-96 20-66 (117)
51 1bor_A Transcription factor PM 99.2 2.5E-12 8.6E-17 78.7 1.7 46 43-97 4-49 (56)
52 2c2l_A CHIP, carboxy terminus 99.2 9.3E-12 3.2E-16 97.5 4.6 53 40-97 203-255 (281)
53 2vje_B MDM4 protein; proto-onc 99.2 5.9E-12 2E-16 79.0 2.0 52 44-100 6-59 (63)
54 3hcs_A TNF receptor-associated 99.2 1E-11 3.6E-16 91.7 3.6 54 39-97 12-65 (170)
55 4a0k_B E3 ubiquitin-protein li 99.2 3E-12 1E-16 90.0 0.2 48 44-96 47-111 (117)
56 4ap4_A E3 ubiquitin ligase RNF 99.1 1.7E-11 5.8E-16 86.1 2.3 50 43-97 70-125 (133)
57 3htk_C E3 SUMO-protein ligase 99.1 4E-11 1.4E-15 94.6 4.3 56 39-97 175-232 (267)
58 4ic3_A E3 ubiquitin-protein li 99.1 1.2E-11 4E-16 79.9 0.5 46 44-99 23-69 (74)
59 2y1n_A E3 ubiquitin-protein li 99.1 4.8E-11 1.6E-15 99.0 4.0 48 44-97 331-379 (389)
60 2f42_A STIP1 homology and U-bo 99.1 6.7E-11 2.3E-15 88.7 4.3 52 41-97 102-153 (179)
61 2d8s_A Cellular modulator of i 99.1 1.3E-10 4.5E-15 76.3 4.7 51 43-97 13-70 (80)
62 2ea5_A Cell growth regulator w 99.1 1.8E-10 6.1E-15 73.3 4.8 48 43-100 13-61 (68)
63 2ecg_A Baculoviral IAP repeat- 99.0 1.8E-10 6.1E-15 74.3 4.0 46 43-98 23-69 (75)
64 2ct0_A Non-SMC element 1 homol 98.9 2.1E-09 7.3E-14 69.5 5.3 51 43-96 13-63 (74)
65 1wim_A KIAA0161 protein; ring 98.8 1E-09 3.4E-14 73.6 2.6 51 44-94 4-61 (94)
66 2bay_A PRE-mRNA splicing facto 98.8 1.4E-09 4.8E-14 67.8 2.9 48 45-97 3-50 (61)
67 2yho_A E3 ubiquitin-protein li 98.8 5.8E-10 2E-14 72.9 0.7 44 45-98 18-62 (79)
68 3t6p_A Baculoviral IAP repeat- 98.7 2.2E-09 7.5E-14 87.9 0.8 47 43-99 293-340 (345)
69 3k1l_B Fancl; UBC, ring, RWD, 98.5 3.6E-08 1.2E-12 80.5 3.6 56 42-97 305-373 (381)
70 3vk6_A E3 ubiquitin-protein li 98.5 3.4E-08 1.2E-12 66.9 2.8 48 47-98 3-50 (101)
71 1vyx_A ORF K3, K3RING; zinc-bi 98.5 1.9E-07 6.6E-12 57.8 4.4 49 44-96 5-58 (60)
72 3nw0_A Non-structural maintena 97.5 6.5E-05 2.2E-09 58.4 3.4 49 45-96 180-228 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.0006 2.1E-08 45.4 2.6 33 44-76 2-36 (101)
74 2cs3_A Protein C14ORF4, MY039 96.4 0.005 1.7E-07 39.9 4.7 48 42-90 12-63 (93)
75 2ko5_A Ring finger protein Z; 95.4 0.0096 3.3E-07 39.7 2.7 48 43-97 26-73 (99)
76 3m62_A Ubiquitin conjugation f 89.0 0.29 9.9E-06 44.8 3.7 50 42-97 888-938 (968)
77 3i2d_A E3 SUMO-protein ligase 87.6 0.13 4.5E-06 42.2 0.5 54 42-96 246-299 (371)
78 4fo9_A E3 SUMO-protein ligase 86.9 0.18 6.1E-06 41.2 1.0 55 41-96 211-265 (360)
79 2lri_C Autoimmune regulator; Z 86.3 0.61 2.1E-05 28.7 3.0 50 43-94 10-59 (66)
80 1weo_A Cellulose synthase, cat 84.8 3.7 0.00013 26.9 6.3 51 43-97 14-70 (93)
81 1wd2_A Ariadne-1 protein homol 84.6 0.14 4.9E-06 31.0 -0.5 34 46-79 7-47 (60)
82 1wil_A KIAA1045 protein; ring 84.3 1.9 6.7E-05 27.9 4.7 36 40-76 10-47 (89)
83 1vfy_A Phosphatidylinositol-3- 80.4 1.2 4.2E-05 27.6 2.7 30 45-74 11-43 (73)
84 3mjh_B Early endosome antigen 79.8 0.3 1E-05 26.3 -0.3 17 44-60 4-20 (34)
85 1z2q_A LM5-1; membrane protein 77.2 2.7 9.3E-05 26.7 3.7 33 42-74 18-53 (84)
86 2l5u_A Chromodomain-helicase-D 76.7 1.7 5.8E-05 26.0 2.4 50 42-93 8-57 (61)
87 2yw8_A RUN and FYVE domain-con 76.3 1.6 5.4E-05 27.7 2.3 32 43-74 17-51 (82)
88 1joc_A EEA1, early endosomal a 76.2 1.3 4.3E-05 30.6 1.9 31 44-74 68-101 (125)
89 1y02_A CARP2, FYVE-ring finger 74.7 0.4 1.4E-05 33.2 -1.0 47 43-94 17-66 (120)
90 1x4u_A Zinc finger, FYVE domai 73.8 2 6.9E-05 27.3 2.4 32 43-74 12-46 (84)
91 1we9_A PHD finger family prote 73.6 0.49 1.7E-05 28.5 -0.6 51 43-93 4-57 (64)
92 2jmo_A Parkin; IBR, E3 ligase, 73.4 0.26 8.8E-06 31.4 -2.1 16 63-78 55-70 (80)
93 1weu_A Inhibitor of growth fam 73.3 5.1 0.00018 26.1 4.3 49 41-93 32-84 (91)
94 3t7l_A Zinc finger FYVE domain 73.0 3.4 0.00012 26.7 3.3 33 43-75 18-53 (90)
95 3zyq_A Hepatocyte growth facto 72.4 2.8 9.4E-05 31.7 3.2 32 43-74 162-196 (226)
96 1wen_A Inhibitor of growth fam 71.8 5 0.00017 24.8 3.7 48 42-93 13-64 (71)
97 1dvp_A HRS, hepatocyte growth 70.7 2.8 9.4E-05 31.4 2.8 32 43-74 159-193 (220)
98 1z60_A TFIIH basal transcripti 70.7 2 6.8E-05 25.9 1.6 41 46-91 16-58 (59)
99 2k16_A Transcription initiatio 66.8 1.2 3.9E-05 27.7 -0.0 52 43-95 16-69 (75)
100 3ql9_A Transcriptional regulat 66.5 8.1 0.00028 26.8 4.3 50 44-94 56-111 (129)
101 1fp0_A KAP-1 corepressor; PHD 66.2 3 0.0001 27.1 1.9 55 37-93 17-71 (88)
102 1wfk_A Zinc finger, FYVE domai 65.8 3.9 0.00013 26.3 2.4 31 45-75 9-42 (88)
103 2lv9_A Histone-lysine N-methyl 65.1 2.1 7.2E-05 28.2 1.0 46 45-93 28-75 (98)
104 2zet_C Melanophilin; complex, 64.9 2.9 0.0001 29.9 1.8 47 44-94 67-117 (153)
105 3fyb_A Protein of unknown func 63.8 2.9 9.8E-05 27.9 1.4 13 67-79 41-53 (104)
106 2o35_A Hypothetical protein DU 63.8 2.9 9.8E-05 27.9 1.4 13 67-79 42-54 (105)
107 3o36_A Transcription intermedi 62.2 1.9 6.3E-05 31.4 0.3 50 44-95 3-52 (184)
108 1mm2_A MI2-beta; PHD, zinc fin 60.5 2.6 8.8E-05 25.2 0.7 50 43-94 7-56 (61)
109 3u5n_A E3 ubiquitin-protein li 60.3 1.6 5.5E-05 32.4 -0.3 49 44-94 6-54 (207)
110 1wep_A PHF8; structural genomi 60.2 13 0.00043 23.1 4.0 52 43-95 10-64 (79)
111 3lqh_A Histone-lysine N-methyl 59.5 4.5 0.00015 29.7 2.0 52 45-96 2-65 (183)
112 1zbd_B Rabphilin-3A; G protein 58.7 4.1 0.00014 28.4 1.6 50 44-94 54-107 (134)
113 2lbm_A Transcriptional regulat 58.5 12 0.0004 26.4 4.0 49 44-93 62-116 (142)
114 3mpx_A FYVE, rhogef and PH dom 56.9 2.3 7.7E-05 34.6 0.0 51 43-93 373-428 (434)
115 2jne_A Hypothetical protein YF 56.3 0.5 1.7E-05 31.5 -3.3 41 46-97 33-73 (101)
116 1x62_A C-terminal LIM domain p 56.2 15 0.00051 22.3 3.9 41 43-97 13-53 (79)
117 2ct7_A Ring finger protein 31; 55.5 0.8 2.7E-05 29.4 -2.4 29 48-76 28-61 (86)
118 3ttc_A HYPF, transcriptional r 55.1 7.9 0.00027 33.9 3.1 54 42-95 14-99 (657)
119 3v43_A Histone acetyltransfera 53.4 16 0.00056 24.1 3.9 32 43-74 3-42 (112)
120 1x64_A Alpha-actinin-2 associa 52.2 29 0.00099 21.5 4.8 42 42-97 22-63 (89)
121 1wfl_A Zinc finger protein 216 51.2 26 0.00089 21.9 4.3 28 44-71 24-51 (74)
122 3vth_A Hydrogenase maturation 51.0 13 0.00044 33.2 3.8 54 42-95 108-193 (761)
123 2ysm_A Myeloid/lymphoid or mix 50.8 5.2 0.00018 26.5 1.1 34 43-76 5-40 (111)
124 4g9i_A Hydrogenase maturation 50.8 13 0.00045 33.2 3.9 54 42-95 103-188 (772)
125 2d8y_A Eplin protein; LIM doma 50.7 25 0.00087 21.9 4.4 42 43-97 13-54 (91)
126 2dj7_A Actin-binding LIM prote 49.8 17 0.00059 22.3 3.4 42 42-96 12-53 (80)
127 2l43_A N-teminal domain from h 48.0 20 0.00069 22.8 3.6 51 41-94 21-75 (88)
128 2fiy_A Protein FDHE homolog; F 47.7 1.1 3.8E-05 35.7 -3.2 47 43-94 180-231 (309)
129 3o70_A PHD finger protein 13; 47.2 3.2 0.00011 25.5 -0.5 48 43-93 17-66 (68)
130 1wem_A Death associated transc 45.9 28 0.00097 21.2 3.9 48 45-93 16-69 (76)
131 2cor_A Pinch protein; LIM doma 45.9 33 0.0011 20.8 4.3 40 44-97 14-53 (79)
132 1f62_A Transcription factor WS 44.9 7.1 0.00024 22.0 0.9 46 47-93 2-49 (51)
133 2pv0_B DNA (cytosine-5)-methyl 44.9 14 0.00048 30.3 2.9 48 45-93 93-147 (386)
134 3a1b_A DNA (cytosine-5)-methyl 44.7 13 0.00046 26.7 2.5 47 45-92 79-132 (159)
135 2xqn_T Testin, TESS; metal-bin 43.4 9.8 0.00034 25.3 1.5 46 45-97 30-75 (126)
136 3shb_A E3 ubiquitin-protein li 43.4 3.1 0.0001 26.3 -1.0 47 47-93 28-76 (77)
137 2vpb_A Hpygo1, pygopus homolog 43.3 13 0.00045 22.4 1.9 32 43-74 6-41 (65)
138 2yt5_A Metal-response element- 42.9 10 0.00035 22.5 1.4 51 43-93 4-60 (66)
139 1wew_A DNA-binding family prot 42.5 32 0.0011 21.2 3.8 50 43-93 14-71 (78)
140 2co8_A NEDD9 interacting prote 42.5 45 0.0015 20.3 4.5 42 43-97 13-54 (82)
141 2ri7_A Nucleosome-remodeling f 41.5 5.6 0.00019 28.4 0.0 51 43-94 6-59 (174)
142 1wfh_A Zinc finger (AN1-like) 40.6 36 0.0012 20.6 3.6 29 43-71 13-41 (64)
143 2e6r_A Jumonji/ARID domain-con 40.5 18 0.00063 23.2 2.5 52 41-93 12-65 (92)
144 2l4z_A DNA endonuclease RBBP8, 40.0 19 0.00065 24.2 2.6 40 44-96 60-99 (123)
145 1xwh_A Autoimmune regulator; P 39.4 17 0.0006 21.7 2.1 49 43-93 6-54 (66)
146 1x4l_A Skeletal muscle LIM-pro 39.3 28 0.00097 20.4 3.1 40 45-97 5-47 (72)
147 2e6s_A E3 ubiquitin-protein li 39.0 5.7 0.00019 24.9 -0.3 47 47-93 28-76 (77)
148 1wg2_A Zinc finger (AN1-like) 38.0 41 0.0014 20.4 3.6 28 44-71 14-41 (64)
149 2ro1_A Transcription intermedi 37.4 8.7 0.0003 28.1 0.5 48 45-94 2-49 (189)
150 2d8v_A Zinc finger FYVE domain 37.3 17 0.00058 22.3 1.7 30 44-75 7-37 (67)
151 1zfo_A LAsp-1; LIM domain, zin 37.3 26 0.00088 17.7 2.3 26 47-72 5-30 (31)
152 2yql_A PHD finger protein 21A; 37.1 17 0.00059 20.9 1.7 49 43-93 7-55 (56)
153 1wev_A Riken cDNA 1110020M19; 36.6 8.2 0.00028 24.7 0.2 52 44-95 15-73 (88)
154 3ask_A E3 ubiquitin-protein li 35.6 8.8 0.0003 29.2 0.3 48 46-93 175-224 (226)
155 2d8x_A Protein pinch; LIM doma 35.5 19 0.00067 21.1 1.9 39 45-97 5-43 (70)
156 3asl_A E3 ubiquitin-protein li 35.5 6.5 0.00022 24.1 -0.4 47 47-93 20-68 (70)
157 2kwj_A Zinc finger protein DPF 35.0 22 0.00075 23.6 2.2 30 46-75 2-40 (114)
158 2cup_A Skeletal muscle LIM-pro 34.5 8.2 0.00028 24.6 -0.0 44 46-96 34-77 (101)
159 1wig_A KIAA1808 protein; LIM d 33.9 41 0.0014 20.0 3.2 38 45-96 5-42 (73)
160 2d8z_A Four and A half LIM dom 33.4 34 0.0012 19.9 2.7 38 45-96 5-42 (70)
161 1wfp_A Zinc finger (AN1-like) 33.4 70 0.0024 19.9 4.2 29 43-71 23-51 (74)
162 2puy_A PHD finger protein 21A; 32.7 25 0.00084 20.5 1.9 49 44-94 4-52 (60)
163 2csz_A Synaptotagmin-like prot 32.5 58 0.002 20.4 3.7 31 42-72 22-56 (76)
164 1wyh_A SLIM 2, skeletal muscle 32.5 32 0.0011 20.1 2.5 40 45-97 5-45 (72)
165 2cu8_A Cysteine-rich protein 2 32.0 28 0.00096 20.8 2.2 40 45-97 9-48 (76)
166 2gmg_A Hypothetical protein PF 31.6 29 0.001 23.1 2.3 27 58-94 67-93 (105)
167 2jrp_A Putative cytoplasmic pr 31.6 2.4 8.1E-05 27.2 -3.0 41 46-97 3-43 (81)
168 1x6a_A LIMK-2, LIM domain kina 31.1 38 0.0013 20.4 2.8 37 46-96 16-52 (81)
169 2dar_A PDZ and LIM domain prot 30.7 29 0.00099 21.5 2.2 40 44-97 24-63 (90)
170 1m3v_A FLIN4, fusion of the LI 30.7 21 0.00071 23.7 1.5 47 46-97 33-81 (122)
171 2jvx_A NF-kappa-B essential mo 29.4 16 0.00054 18.5 0.6 13 46-58 4-16 (28)
172 2xb1_A Pygopus homolog 2, B-ce 28.9 23 0.00079 23.3 1.5 51 45-95 3-62 (105)
173 1nyp_A Pinch protein; LIM doma 28.5 30 0.001 19.9 1.8 39 45-97 5-43 (66)
174 2vnf_A ING 4, P29ING4, inhibit 27.7 11 0.00038 22.2 -0.2 46 44-93 9-58 (60)
175 2cur_A Skeletal muscle LIM-pro 27.5 32 0.0011 20.0 1.9 38 45-96 5-42 (69)
176 2a20_A Regulating synaptic mem 26.8 40 0.0014 20.2 2.1 13 42-54 6-18 (62)
177 2xjy_A Rhombotin-2; oncoprotei 26.3 27 0.00094 23.1 1.5 49 44-97 28-78 (131)
178 2rgt_A Fusion of LIM/homeobox 26.1 51 0.0018 23.0 3.0 46 44-97 32-77 (169)
179 3c6w_A P28ING5, inhibitor of g 26.1 13 0.00043 22.0 -0.2 47 43-93 7-57 (59)
180 1rut_X Flinc4, fusion protein 25.6 18 0.00062 25.9 0.5 46 46-96 33-80 (188)
181 2g6q_A Inhibitor of growth pro 25.5 13 0.00045 22.1 -0.2 47 43-93 9-59 (62)
182 2ku3_A Bromodomain-containing 25.2 61 0.0021 19.7 2.9 48 43-93 14-65 (71)
183 1g47_A Pinch protein; LIM doma 24.6 50 0.0017 19.5 2.4 41 44-97 10-51 (77)
184 2dlo_A Thyroid receptor-intera 24.5 45 0.0015 20.0 2.2 40 44-97 14-53 (81)
185 2ehe_A Four and A half LIM dom 23.5 67 0.0023 19.2 2.9 40 45-97 15-55 (82)
186 1x61_A Thyroid receptor intera 22.9 80 0.0027 18.3 3.1 10 47-56 7-16 (72)
187 1a7i_A QCRP2 (LIM1); LIM domai 22.2 20 0.00067 21.8 0.1 40 45-97 7-46 (81)
188 1x68_A FHL5 protein; four-and- 21.6 40 0.0014 20.0 1.5 39 45-96 5-46 (76)
189 2lv2_A Insulinoma-associated p 21.3 1.3E+02 0.0044 18.4 4.0 42 44-97 27-68 (85)
190 3kv5_D JMJC domain-containing 20.8 13 0.00046 31.3 -1.2 52 43-95 35-89 (488)
191 1v6g_A Actin binding LIM prote 20.6 40 0.0014 20.3 1.3 37 46-96 16-52 (81)
192 1x4k_A Skeletal muscle LIM-pro 20.3 36 0.0012 19.9 1.0 39 46-97 6-45 (72)
193 2cuq_A Four and A half LIM dom 20.1 67 0.0023 19.1 2.3 37 46-96 16-52 (80)
No 1
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=97.72 Aligned_cols=53 Identities=26% Similarity=0.447 Sum_probs=46.7
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....++..|+||++.+.+++.+++|||.||..||..|+... ..||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-----NRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-----SSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-----CcCCCcCcccCc
Confidence 34566788999999999998877999999999999999887 899999988764
No 2
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.57 E-value=1e-15 Score=97.02 Aligned_cols=60 Identities=32% Similarity=0.675 Sum_probs=49.7
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccccccccccccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLLFASATECLQYI 108 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~ 108 (153)
.+..|+||++.+.++++..+|||.||..||.+|+... ..||+||+.+..++..+..+..+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~~~~d~~~ 63 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----PTCPLCKVPVESVVHTIESDSEF 63 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----CSTTTTCCCCCCEECCCCSCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-----CcCcCCChhhHhhhhccccchHh
Confidence 3557999999999976657899999999999999987 89999999988766655554443
No 3
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=94.76 Aligned_cols=51 Identities=24% Similarity=0.383 Sum_probs=44.7
Q ss_pred CCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 41 PTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.......|+||++.+.+|++ ++|||.||..||..|+... ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 61 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRAT-----PRCYICDQPTGG 61 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHHC-----SBCSSSCCBCCS
T ss_pred cCCCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHCC-----CcCCCcCccccc
Confidence 34556789999999999987 6899999999999999887 899999998763
No 4
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=91.83 Aligned_cols=52 Identities=23% Similarity=0.519 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccccCcc------ccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRS------YTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~------~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
........|+||++.+.++. ++.+|||.||..||..|+... ..||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-----SSCTTTCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-----CCCCCCCCccC
Confidence 34456778999999998762 346899999999999999987 89999998764
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=90.85 Aligned_cols=54 Identities=22% Similarity=0.488 Sum_probs=44.8
Q ss_pred CCCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 39 DRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 39 ~~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....++..|+||++.+.+|+. ++|||.||..||.+|+... ...||+||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSS----SPKCTACQESIVK 62 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTS----SCCCTTTCCCCCT
T ss_pred hhcCCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhC----cCCCCCCCcCCCh
Confidence 3445667889999999999988 5899999999999999532 2799999988754
No 6
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=93.06 Aligned_cols=55 Identities=22% Similarity=0.409 Sum_probs=44.8
Q ss_pred CCCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 39 DRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 39 ~~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
......+..|+||++.+.+|+.+..|||.||..||..|+... ....||+||+.+.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---DEHTCPTCHQNDV 63 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS---SSSCCSSSCCSSC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc---CCCcCCCCCCcCC
Confidence 344567789999999999999853399999999999999854 1358999998654
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.5e-15 Score=93.74 Aligned_cols=51 Identities=29% Similarity=0.667 Sum_probs=44.5
Q ss_pred CCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 41 PTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....+..|+||++.+.+++.+ +|||.||..||..|+... ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLG-----KRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTCS-----SBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHCC-----CcCcCcCchhCH
Confidence 345667899999999999885 799999999999999877 899999998764
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=90.28 Aligned_cols=51 Identities=24% Similarity=0.624 Sum_probs=42.1
Q ss_pred CCCCccccccccccc--CccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 42 TSPTSRCPICLLVLN--NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~--~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...+..|+||++.+. ......+|||.||..||.+|+... ..||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----KKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----CCCcCcCccccC
Confidence 345667999999886 334446899999999999999988 799999988765
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.48 E-value=1.1e-14 Score=92.72 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCcc------ccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 42 TSPTSRCPICLLVLNNRS------YTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~------~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..++..|+||++.+.++. ++.+|||.||..||.+|+..+ ..||+||+.+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----CCCCCCCCccCh
Confidence 345678999999998762 446899999999999999988 899999988764
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.8e-14 Score=90.74 Aligned_cols=56 Identities=27% Similarity=0.523 Sum_probs=45.4
Q ss_pred CCCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 39 DRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 39 ~~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
......+..|+||++.+.+++.+ +|||.||..||..|+.. ......||+||+.+..
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET--SCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSS--SCSCCCCSSSCCCCCC
T ss_pred HHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHc--CCCCCCCCCCCCcCCc
Confidence 34456778999999999999885 89999999999999872 1223799999987653
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=3.2e-14 Score=92.38 Aligned_cols=52 Identities=21% Similarity=0.396 Sum_probs=42.8
Q ss_pred CCCCCcccccccccccCcc--ccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 41 PTSPTSRCPICLLVLNNRS--YTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~--~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....+..|+||++.+.++. ...+|||.||..||.+|+... ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 64 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-----DSCPVCRKSLTG 64 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-----CSCTTTCCCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-----CcCcCcCCccCC
Confidence 3455678999999998543 335899999999999999877 899999988764
No 12
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-14 Score=94.40 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=44.3
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
....++..|+||++.+.+|+.+..|||+||..||..|+... ....||+||..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---DEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC---TTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc---CCCcCcCCCCcCC
Confidence 34567789999999999999853399999999999998754 1269999998863
No 13
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.46 E-value=2e-14 Score=87.25 Aligned_cols=49 Identities=20% Similarity=0.604 Sum_probs=40.6
Q ss_pred CCCcccccccccccC---ccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 43 SPTSRCPICLLVLNN---RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~---~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
.++..|+||++.+.+ +..+..|||.||..||.+|++.+ .+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-----~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-----STCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-----CSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-----CcCcCCCCEeE
Confidence 345679999999986 45544599999999999999877 89999998753
No 14
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.46 E-value=2.5e-14 Score=92.88 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=44.7
Q ss_pred CCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 41 PTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...++..|+||++.+.+|+.+ +|||+||..||.+|+... ...||+||+.+..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~~----~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAG----HKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTT----CCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHHC----cCCCCCCcCCCCh
Confidence 456678999999999999985 799999999999999862 2899999988753
No 15
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.7e-14 Score=89.97 Aligned_cols=52 Identities=21% Similarity=0.537 Sum_probs=43.1
Q ss_pred CCCCCcccccccccccCcccc--CccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 41 PTSPTSRCPICLLVLNNRSYT--DTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~~~--~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....+..|+||++.+.++..+ .+|+|.||..||.+|++.. ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----KVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----SBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----CcCCCcCccccc
Confidence 345567899999999865432 3799999999999999988 799999988765
No 16
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=1.4e-13 Score=90.02 Aligned_cols=57 Identities=23% Similarity=0.487 Sum_probs=45.9
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcC-CCCCCcccCccccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISS-ESSPALCKMSKQRLLL 97 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~-~~~~~~CP~Cr~~~~~ 97 (153)
.....+..|+||++.+.+++. .+|||.||..||..|+.... ......||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HhCccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 445667889999999999987 57999999999999988721 1223899999988764
No 17
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=85.70 Aligned_cols=50 Identities=30% Similarity=0.595 Sum_probs=41.3
Q ss_pred CCCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCc
Q psy6056 39 DRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMS 91 (153)
Q Consensus 39 ~~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~C 91 (153)
.....++..|+||++.+.+|+++ +|||.||..||.+|+... .....||+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~C 63 (63)
T 2ysj_A 14 VNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETS--CGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHC--SSCCCCSCC
T ss_pred HHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcC--CCCCcCcCC
Confidence 34456778999999999999985 899999999999999842 123789998
No 18
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.44 E-value=1.2e-13 Score=91.69 Aligned_cols=52 Identities=12% Similarity=-0.063 Sum_probs=46.2
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....+..||||++.+.+|+++ +|||+||..||..|+... .+||+|+..+..
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~-----~~cP~~~~~l~~ 60 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNS-----PTDPFNRQMLTE 60 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHC-----SBCTTTCCBCCG
T ss_pred hcCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcC-----CCCCCCcCCCCh
Confidence 4457789999999999999995 699999999999999976 899999988764
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=89.20 Aligned_cols=57 Identities=23% Similarity=0.478 Sum_probs=45.6
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcC-CCCCCcccCccccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISS-ESSPALCKMSKQRLLL 97 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~-~~~~~~CP~Cr~~~~~ 97 (153)
........|+||++.+.+++.+ +|||.||..||..|+.... ......||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4456678899999999999884 8999999999999987610 1123899999988764
No 20
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.42 E-value=4.2e-14 Score=96.43 Aligned_cols=51 Identities=29% Similarity=0.640 Sum_probs=43.7
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.++..|+||++.+.+|+.+++|||.||..||..|+... ...||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ----RAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT----CSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC----cCCCCCCCCcCCH
Confidence 34567999999999998856899999999999999875 1599999998753
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.42 E-value=3.3e-14 Score=102.19 Aligned_cols=47 Identities=23% Similarity=0.625 Sum_probs=42.4
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
+..|+||++.+.+|+++ +|||.||..||..|+... ..||+||+.+..
T Consensus 53 ~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKRK-----IECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTTC-----SBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceEC-CCCCCccHHHHHHHHHcC-----CcCCCCCCcCCC
Confidence 45799999999999884 899999999999999887 899999998865
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=3.1e-14 Score=92.39 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=45.6
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcC--CCCCCcccCccccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISS--ESSPALCKMSKQRLLL 97 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~--~~~~~~CP~Cr~~~~~ 97 (153)
....++..|+||++.+.+|+. .+|||.||..||..|+.... ......||+||..+..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hhcccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 445667889999999999988 48999999999999987521 1234799999988764
No 23
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=8.3e-14 Score=84.41 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=40.4
Q ss_pred CCcccccccccccC---ccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 44 PTSRCPICLLVLNN---RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 44 ~~~~C~ICl~~~~~---~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
.+..|+||++.+.+ ..++.+|||.||..||.+|+... ..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcCC
Confidence 35679999999865 34446899999999999999987 89999998764
No 24
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.42 E-value=4.6e-14 Score=87.87 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=41.6
Q ss_pred CCcccccccccccCcc------ccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNNRS------YTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~------~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
++..|+||++.+.++. ++.+|||.||..||.+|+..+ ..||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-----SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-----CCCCCCCccCCc
Confidence 3567999999998762 446899999999999999987 899999988764
No 25
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.41 E-value=7.1e-14 Score=96.30 Aligned_cols=50 Identities=24% Similarity=0.547 Sum_probs=44.7
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..+..|+||++.+.+|+.+.+|||+||..||..|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-----KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-----SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-----CcCcCCCccccc
Confidence 45678999999999999866999999999999999977 899999988764
No 26
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=89.57 Aligned_cols=55 Identities=18% Similarity=0.424 Sum_probs=44.6
Q ss_pred CCCCCCcccccccccccC----ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 40 RPTSPTSRCPICLLVLNN----RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~----~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....+...|+||++.+.+ ++. .+|||.||..||..|+... .....||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASS--INGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcC--CCCcCCCCCCCcccc
Confidence 345667889999999998 777 4899999999999999853 234799999987654
No 27
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.1e-14 Score=89.96 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=42.2
Q ss_pred CCCCcccccccccccCc--cccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 42 TSPTSRCPICLLVLNNR--SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~--~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...+..|+||++.+..+ +...+|+|.||..||.+|++.+ ..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----CcCcCcCCcCCC
Confidence 34567899999998865 2335799999999999999988 899999987654
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=93.88 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=44.3
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.+...|+||++.+.+|+.+.+|||.||..||..|+... ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-----TQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-----CBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-----CCCCCCCCcCCh
Confidence 34568999999999998866899999999999999977 899999998764
No 29
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5.5e-14 Score=89.43 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=42.8
Q ss_pred CCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 41 PTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....+..|+||++.+.+ +. .+|||.||..||.+|+... ..||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~-~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LI-LPCAHSFCQKCIDKWSDRH-----RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EE-ETTTEEECHHHHHHSSCCC-----SSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-cc-cCCCCcccHHHHHHHHHCc-----CcCCCcCCcccC
Confidence 34556789999999988 55 5899999999999999876 899999988765
No 30
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.39 E-value=3.7e-13 Score=91.78 Aligned_cols=53 Identities=8% Similarity=-0.098 Sum_probs=46.5
Q ss_pred CCCCCCCcccccccccccCccccCccC-CcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 39 DRPTSPTSRCPICLLVLNNRSYTDTCL-HEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 39 ~~~~~~~~~C~ICl~~~~~~~~~~~Cg-H~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....++..||||++.+.+|++ ++|| |+||..||.+|+... .+||+|+.++..
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~~-----~~cP~~~~~l~~ 69 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLSD-----QTDPFNRSPLTM 69 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTTS-----CBCTTTCSBCCT
T ss_pred hhcCcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHhC-----CCCCCCCCCCCh
Confidence 3455778999999999999999 5799 999999999999876 799999998764
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=82.61 Aligned_cols=49 Identities=24% Similarity=0.556 Sum_probs=39.6
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMS 91 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~C 91 (153)
....++..|+||++.+.+++. .+|||.||..||.+|+.. ......||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWED--LERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTS--SCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHh--cCCCCCCCCC
Confidence 344567789999999999988 589999999999999653 1124799998
No 32
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=90.72 Aligned_cols=49 Identities=20% Similarity=0.538 Sum_probs=40.1
Q ss_pred CCcccccccccccC--------------ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNN--------------RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~--------------~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
++..|+||++.+.+ ++.+.+|||.||..||.+|+..+ .+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-----NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-----CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-----CCCCCcCCCcch
Confidence 45669999988865 34545699999999999999988 899999987653
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.37 E-value=1.4e-13 Score=101.47 Aligned_cols=51 Identities=33% Similarity=0.654 Sum_probs=44.1
Q ss_pred CCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 42 TSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
...+..|+||++.+.+|+.+.+|||.||..||..|+... ...||+||..+.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG----NKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT----CCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC----cCCCCCCCCcCC
Confidence 345568999999999998876999999999999999862 279999999875
No 34
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=91.34 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=41.1
Q ss_pred CCCcccccccccccC---ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNN---RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~---~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..+..|+||++.+.. +.. .+|||.||..||..|+..+ ..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~-----~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQKS-----GTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHTTT-----CBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHHcC-----CcCcCcCccCCC
Confidence 456789999999875 444 4799999999999999987 899999987653
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.36 E-value=2.7e-13 Score=85.15 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=40.1
Q ss_pred Ccccccccc-cccCcc---ccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLL-VLNNRS---YTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~-~~~~~~---~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
+..|+||++ .+.++. ++++|||.||..||.+|+... ...||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG----AGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT----SSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC----CCcCCCCCCcccc
Confidence 567999999 888874 346899999999999997643 2789999988754
No 36
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.36 E-value=3.5e-13 Score=92.23 Aligned_cols=52 Identities=12% Similarity=-0.059 Sum_probs=46.0
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
........||||++.+.+|+++ +|||+||..||..|+... .+||+|+.++..
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~-----~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNS-----PTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSC-----SBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcC-----CCCCCCCCCCCh
Confidence 4457789999999999999995 699999999999999866 899999988764
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.36 E-value=5.6e-13 Score=92.35 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=40.5
Q ss_pred CcccccccccccCcc-----------------ccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNRS-----------------YTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~-----------------~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
+..|+||++.|.++. .+.+|+|.||..||..|+..........||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 457999999997643 14689999999999999964211223799999987764
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.35 E-value=5.3e-13 Score=93.40 Aligned_cols=54 Identities=31% Similarity=0.634 Sum_probs=46.2
Q ss_pred CCCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 39 DRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 39 ~~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....++..|+||++.+.+|+. ++|||.||..||..|+... ...||+||..+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 12 DPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDA----GHKCPVDNEILLE 65 (118)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHH----CSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhC----CCCCCCCCCCcCH
Confidence 3456677899999999999988 5899999999999999876 1399999998865
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.35 E-value=3.9e-13 Score=94.72 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=43.0
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..+..|+||++.+.+|+.+ +|||+||..||..|+... ...||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQ----VFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTT----CCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhHC----cCCCCCCCccCCC
Confidence 4456899999999999884 899999999999999854 2599999998864
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.30 E-value=2e-13 Score=94.90 Aligned_cols=52 Identities=21% Similarity=0.543 Sum_probs=44.2
Q ss_pred CCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 41 PTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...++..|+||++.+.+|+.+ +|||.||..||..|+... ...||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKA----SLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCTT----TSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhHC----cCCCCCCCcccCc
Confidence 445567899999999999985 899999999999998752 2799999998864
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.29 E-value=3e-12 Score=83.85 Aligned_cols=51 Identities=18% Similarity=0.479 Sum_probs=39.5
Q ss_pred CCCCccccccccccc--CccccCc--cCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 42 TSPTSRCPICLLVLN--NRSYTDT--CLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~--~~~~~~~--CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..++..||||++.+. ++.+ .+ |||.||..|+..++... ...||.||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~-~p~~CGH~fC~~Cl~~~~~~~----~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINF-FPCTCGYQICRFCWHRIRTDE----NGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTC-CSSTTSCCCCHHHHHHHTTSS----CSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccc-cccCCCCCcCHHHHHHHHhcC----CCCCCCCCCccCC
Confidence 355678999999885 3333 34 99999999999976432 3799999998865
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=7.1e-13 Score=93.30 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=43.0
Q ss_pred CCCcccccccccccCc-------cccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNR-------SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~-------~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
+++..|+||++.+.++ +. ++|||.||..||.+|++.+ ..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNA-----NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEE-ETTCCEEEHHHHHHHHTTC-----SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEe-cCCCChhhHHHHHHHHHhC-----CCCCCCCCcCcc
Confidence 4567899999999887 55 6899999999999999987 899999998864
No 43
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.28 E-value=1.5e-12 Score=90.00 Aligned_cols=48 Identities=23% Similarity=0.579 Sum_probs=40.6
Q ss_pred CCcccccccccccCc-----------------cccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 44 PTSRCPICLLVLNNR-----------------SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~-----------------~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
.+..|+||++.|.++ +++.+|+|.||..||..|+..+ .+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-----SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-----CcCcCCCCcce
Confidence 456799999998855 3445899999999999999987 89999998754
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.28 E-value=1.7e-12 Score=89.43 Aligned_cols=50 Identities=26% Similarity=0.654 Sum_probs=41.9
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...|+||++.+.+|+. ++|||.||..||..|+... .....||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQK--KGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSS--SSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhC--CCCCCCcCCCCcCCH
Confidence 3569999999999988 5899999999999999854 223589999988764
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=94.68 Aligned_cols=50 Identities=16% Similarity=0.363 Sum_probs=43.1
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....|+||++.+.+|+. ++|||+||..||..|+... ...||+||..+..
T Consensus 76 ~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQ----VFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTT----CCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhC----CCcCCCCCccCCC
Confidence 345689999999999998 5899999999999999865 2589999998775
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.26 E-value=2e-12 Score=89.98 Aligned_cols=50 Identities=22% Similarity=0.527 Sum_probs=43.5
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.++..|+||++.+.+|+. ++|||.||..||..|+... ...||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVM----GSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC----cCcCCCCCCCCCH
Confidence 456789999999999988 5899999999999999873 1799999998765
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.24 E-value=1.4e-12 Score=94.25 Aligned_cols=51 Identities=20% Similarity=0.411 Sum_probs=44.0
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRL 95 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 95 (153)
.....+..|+||++.+.+|+. ++|||.||..||.+|+... ...||+||..+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSG----PQNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGS----CEECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcC----CCCCCCCCCcc
Confidence 455677899999999999988 5899999999999999865 25999999875
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.23 E-value=2.2e-12 Score=81.25 Aligned_cols=52 Identities=21% Similarity=0.421 Sum_probs=43.9
Q ss_pred CCCcccccccccccCcccc-CccCCc-ccHhhHHHHHHhcCCCCCCcccCccccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYT-DTCLHE-FCFLCIKQWSQISSESSPALCKMSKQRLLLFA 99 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~-~~CgH~-FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~~~ 99 (153)
.++..|+||++...+++++ .+|||. ||..|+..|.... ..||+||+.+..++
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----~~CPiCR~~i~~~i 59 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-----KPCPVCRQPIQMIV 59 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-----CCCTTTCCCCCEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-----CcCCCcCcchhceE
Confidence 4556799999999988763 389999 8999999999877 89999999887644
No 49
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=5e-12 Score=85.28 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCccccCccCCcccHhhHHHHHHhc-CCCCCCcccC--cccc
Q psy6056 42 TSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQIS-SESSPALCKM--SKQR 94 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~-~~~~~~~CP~--Cr~~ 94 (153)
...+..||||++.|.+|+++..|||+||..||..|+... .......||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 355688999999999999964599999999999998753 1122469999 9865
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=2.2e-12 Score=90.07 Aligned_cols=47 Identities=21% Similarity=0.438 Sum_probs=41.2
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
.....|+||++.+.+|+.+.+|||+||..||..|+. ..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCc
Confidence 345779999999999998658999999999999876 58999999875
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=2.5e-12 Score=78.75 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=38.4
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.+...|+||++.+.+|+. .+|||+||..||..| . ..||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~---~-----~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEAS---G-----MQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSS---S-----SSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEE-cCCCCcccHHHHccC---C-----CCCCcCCcEeec
Confidence 455779999999999988 579999999998662 3 799999987654
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.20 E-value=9.3e-12 Score=97.52 Aligned_cols=53 Identities=9% Similarity=-0.026 Sum_probs=44.8
Q ss_pred CCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 40 RPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
........||||++.+.+|++ ++|||+||..||..|+... ..+||+|+.++..
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~----~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRV----GHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHT----CSSCTTTCCCCCG
T ss_pred CCCCcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHC----CCCCcCCCCCCch
Confidence 344677899999999999999 5799999999999999864 1459999998863
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.18 E-value=5.9e-12 Score=79.00 Aligned_cols=52 Identities=19% Similarity=0.419 Sum_probs=43.1
Q ss_pred CCcccccccccccCcccc-CccCCc-ccHhhHHHHHHhcCCCCCCcccCcccccccccc
Q psy6056 44 PTSRCPICLLVLNNRSYT-DTCLHE-FCFLCIKQWSQISSESSPALCKMSKQRLLLFAS 100 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~-~~CgH~-FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 100 (153)
....|+||++...+++++ .+|||. ||..|+..|.... ..||+||+.+..+++
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-----ASCPICKKEIQLVIK 59 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-----CBCTTTCCBCCEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-----CcCCCcCchhhceEE
Confidence 345799999998887652 489998 9999999998876 899999999876543
No 54
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=91.70 Aligned_cols=54 Identities=31% Similarity=0.634 Sum_probs=46.2
Q ss_pred CCCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 39 DRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 39 ~~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....+...|+||++.+.+|+. ++|||+||..||.+|+... ...||+||..+..
T Consensus 12 ~~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 12 DPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDA----GHKCPVDNEILLE 65 (170)
T ss_dssp SSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHH----CSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhC----CCCCCCCccCcch
Confidence 3456777899999999999988 5899999999999999865 1499999988865
No 55
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.17 E-value=3e-12 Score=90.01 Aligned_cols=48 Identities=23% Similarity=0.579 Sum_probs=0.9
Q ss_pred CCcccccccccccCc-----------------cccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 44 PTSRCPICLLVLNNR-----------------SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~-----------------~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
.+..|+||++.|.++ +++.+|+|.||..||.+|+..+ .+||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-----~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----QVCPLDNREWE 111 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-----CcCCCCCCeee
Confidence 346799999998753 3334899999999999999988 89999998754
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.12 E-value=1.7e-11 Score=86.12 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=42.3
Q ss_pred CCCcccccccccccCc------cccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNR------SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~------~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....|+||++.+.++ .+..+|||.||..||.+|++.. .+||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-----SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-----CCCCCCCCcCCh
Confidence 4567799999999875 1335899999999999999988 899999988764
No 57
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.11 E-value=4e-11 Score=94.56 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=46.0
Q ss_pred CCCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccC--ccccccc
Q psy6056 39 DRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKM--SKQRLLL 97 (153)
Q Consensus 39 ~~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~--Cr~~~~~ 97 (153)
......+..||||++.|.+|+....|||+||..||..|+... +...||+ |++.+..
T Consensus 175 v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~---~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 175 IEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY---TTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC---SCEECSGGGCSCEECG
T ss_pred ecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC---CCCCCCcccccCcCch
Confidence 334567789999999999999866899999999999998742 2368999 9987653
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.09 E-value=1.2e-11 Score=79.87 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=39.3
Q ss_pred CCcccccccccccCccccCccCCc-ccHhhHHHHHHhcCCCCCCcccCccccccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHE-FCFLCIKQWSQISSESSPALCKMSKQRLLLFA 99 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~-FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~~~ 99 (153)
++..|+||++.+.+++.+ +|||. ||..|+..| ..||+||+.+...+
T Consensus 23 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~---------~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV---------DKCPMCYTVITFKQ 69 (74)
T ss_dssp HHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC---------SBCTTTCCBCSEEE
T ss_pred cCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC---------ccCCCcCcCccCcE
Confidence 456799999999999885 89999 999999766 59999999887643
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.09 E-value=4.8e-11 Score=98.95 Aligned_cols=48 Identities=19% Similarity=0.472 Sum_probs=42.2
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHH-hcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQ-ISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~-~~~~~~~~~CP~Cr~~~~~ 97 (153)
....|+||++.+.+++. .+|||.||..||..|.. .. ..||+||+.+..
T Consensus 331 ~~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~-----~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEG-----QGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTC-----SBCTTTCCBCCE
T ss_pred CCCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCC-----CCCCCCCCccCC
Confidence 34689999999999887 58999999999999998 45 899999998765
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.08 E-value=6.7e-11 Score=88.73 Aligned_cols=52 Identities=10% Similarity=-0.048 Sum_probs=44.6
Q ss_pred CCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 41 PTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..+....||||++.+.+|+++ +|||+||..||..|+... ..+||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~----~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRV----GHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhC----CCCCCCCcCCCCh
Confidence 456788999999999999995 899999999999999864 1479999988764
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.3e-10 Score=76.31 Aligned_cols=51 Identities=24% Similarity=0.522 Sum_probs=40.0
Q ss_pred CCCccccccccccc--CccccCccC-----CcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLN--NRSYTDTCL-----HEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~--~~~~~~~Cg-----H~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.++..|.||++.+. ++.+ .+|. |.||..||.+|+..+ +..+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~~---~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLI-TPCHCTGSLHFVHQACLQQWIKSS---DTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEE-CSSSCCSSSCCEETTHHHHHHHHH---CCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeE-eccccCCcCCeeCHHHHHHHHhhC---CCCCCCCCCCeeec
Confidence 44567999998875 4544 6896 999999999999875 12599999987654
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.8e-10 Score=73.28 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=39.5
Q ss_pred CCCcccccccccccCccccCccCCc-ccHhhHHHHHHhcCCCCCCcccCcccccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHE-FCFLCIKQWSQISSESSPALCKMSKQRLLLFAS 100 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~-FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 100 (153)
.++..|.||++...+++. .+|||. ||..|+.. . ..||+||+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~----~-----~~CP~CR~~i~~~~~ 61 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKY----F-----QQCPMCRQFVQESFA 61 (68)
T ss_dssp CCSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHH----C-----SSCTTTCCCCCCEEC
T ss_pred CCCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhc----C-----CCCCCCCcchhceEE
Confidence 445679999999988877 589999 99999862 3 799999998876443
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.8e-10 Score=74.32 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=38.4
Q ss_pred CCCcccccccccccCccccCccCCc-ccHhhHHHHHHhcCCCCCCcccCcccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHE-FCFLCIKQWSQISSESSPALCKMSKQRLLLF 98 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~-FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~~ 98 (153)
.++..|+||++.+.+++. .+|||. ||..|+. .. ..||+||+.+...
T Consensus 23 ~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~----~~-----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAE----AV-----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH----HC-----SBCTTTCCBCCCC
T ss_pred CCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh----CC-----CCCccCCceecCc
Confidence 345579999999999988 589999 9999984 23 7999999988764
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=2.1e-09 Score=69.51 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=39.7
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
.....|+||++.+..-..-..|+|.||..||.+|++.. +..+||+||+.+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~---~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN---AEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC---SSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc---CCCCCCCCcCcCC
Confidence 34467999999987544444799999999999999754 2378999997654
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=1e-09 Score=73.59 Aligned_cols=51 Identities=25% Similarity=0.525 Sum_probs=39.0
Q ss_pred CCcccccccccccCcccc--CccCCcccHhhHHHHHHhcC---CCCCCcccC--cccc
Q psy6056 44 PTSRCPICLLVLNNRSYT--DTCLHEFCFLCIKQWSQISS---ESSPALCKM--SKQR 94 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~--~~CgH~FC~~Ci~~~~~~~~---~~~~~~CP~--Cr~~ 94 (153)
....|+||++.+..+..+ .+|||.||..|+..|+..+. ......||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456799999998876543 37999999999999876421 112468999 9987
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.84 E-value=1.4e-09 Score=67.78 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=42.2
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...|+|+++.+.+|+++.++||.|++.||.+|+..+ .+||+.+.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-----~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-----GNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-----SBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-----CCCcCCcCCCCh
Confidence 357999999999999854899999999999999987 789999988754
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.82 E-value=5.8e-10 Score=72.87 Aligned_cols=44 Identities=23% Similarity=0.484 Sum_probs=37.1
Q ss_pred CcccccccccccCccccCccCCc-ccHhhHHHHHHhcCCCCCCcccCcccccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHE-FCFLCIKQWSQISSESSPALCKMSKQRLLLF 98 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~-FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~~ 98 (153)
+..|+||++.+.+++.+ +|||. ||..|+..| ..||+||+.+...
T Consensus 18 ~~~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~---------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFC-PCGHTVCCESCAAQL---------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC---------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEE-CCCCHHHHHHHHHhc---------CcCCCCCchhhCe
Confidence 35699999999998884 89999 999998543 4999999988764
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.70 E-value=2.2e-09 Score=87.92 Aligned_cols=47 Identities=15% Similarity=0.354 Sum_probs=40.1
Q ss_pred CCCcccccccccccCccccCccCCc-ccHhhHHHHHHhcCCCCCCcccCccccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHE-FCFLCIKQWSQISSESSPALCKMSKQRLLLFA 99 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~-FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~~~ 99 (153)
.++..|+||++.+.+++.+ +|||. ||..|+..| ..||+||..+...+
T Consensus 293 ~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~---------~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL---------RKCPICRGIIKGTV 340 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC---------SBCTTTCCBCCEEE
T ss_pred cCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC---------CcCCCCCCCccCeE
Confidence 4567899999999999885 89999 999998755 58999999987643
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.55 E-value=3.6e-08 Score=80.52 Aligned_cols=56 Identities=20% Similarity=0.466 Sum_probs=40.7
Q ss_pred CCCCcccccccccccCcc-c------cCccCCcccHhhHHHHHHhcCC------CCCCcccCccccccc
Q psy6056 42 TSPTSRCPICLLVLNNRS-Y------TDTCLHEFCFLCIKQWSQISSE------SSPALCKMSKQRLLL 97 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~-~------~~~CgH~FC~~Ci~~~~~~~~~------~~~~~CP~Cr~~~~~ 97 (153)
......|+||+..+.+.. + ...|+|.||..||.+|++.... .-...||.||+++..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345667999999887511 1 1379999999999999986310 012579999998875
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.54 E-value=3.4e-08 Score=66.91 Aligned_cols=48 Identities=19% Similarity=0.392 Sum_probs=40.2
Q ss_pred ccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccccc
Q psy6056 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLLF 98 (153)
Q Consensus 47 ~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~~ 98 (153)
-|++|--++..-..+.+|+|.||++|+..|.+.. ...||.|+.++..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~----~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG----DKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT----CCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc----CCCCcCcCCeeeee
Confidence 4889988888766667999999999999998654 28999999988764
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.45 E-value=1.9e-07 Score=57.78 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=37.3
Q ss_pred CCcccccccccccCccccCccC--C---cccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCL--H---EFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~Cg--H---~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
+...|.||++...++.+ .||. | .||..||.+|+..+ ....||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~-~PC~C~gs~~~~H~~Cl~~W~~~~---~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERF-RACGCTGELENVHRSCLSTWLTIS---RNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCC-CSCCCSSGGGSCCHHHHHHHHHHH---TCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCcee-cCcCCCCchhhhHHHHHHHHHHhC---CCCccCCCCCeee
Confidence 45679999998666554 6754 4 89999999998753 1279999998764
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.47 E-value=6.5e-05 Score=58.35 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=38.0
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
-..|.||.+.+.....-..|+|.||..|+..|++.. ....||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~---~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN---AEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTC---SSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhC---CCCCCCCCCCCCC
Confidence 456999999887554445699999999999998754 2359999987543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.82 E-value=0.0006 Score=45.44 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=25.0
Q ss_pred CCccccccccc-ccCcccc-CccCCcccHhhHHHH
Q psy6056 44 PTSRCPICLLV-LNNRSYT-DTCLHEFCFLCIKQW 76 (153)
Q Consensus 44 ~~~~C~ICl~~-~~~~~~~-~~CgH~FC~~Ci~~~ 76 (153)
++..|+||++. +..++.. ..|+|+||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35779999976 4455541 479999999999873
No 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.42 E-value=0.005 Score=39.93 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=34.2
Q ss_pred CCCCcccccccccccCccccCcc----CCcccHhhHHHHHHhcCCCCCCcccC
Q psy6056 42 TSPTSRCPICLLVLNNRSYTDTC----LHEFCFLCIKQWSQISSESSPALCKM 90 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~~~~~C----gH~FC~~Ci~~~~~~~~~~~~~~CP~ 90 (153)
....+.|.+|.+.+.+.-.+ .| .|.||+.|-...++..-......||-
T Consensus 12 ~~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 35567899999999976543 34 79999999988877543344455654
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.38 E-value=0.0096 Score=39.66 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=35.7
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
-.-..|..|--... ..+.-..|.+|..||...+..+ ..||+|..++-.
T Consensus 26 ~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~S-----drCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVS-----NRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSS-----SEETTTTEECCC
T ss_pred cCcccChhhccccC--CeeeecchhhHHHHHHHHHhhc-----cCCcccCCcCCc
Confidence 33456999976544 4433335999999999888877 899999988765
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.96 E-value=0.29 Score=44.76 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=43.6
Q ss_pred CCCCcccccccccccCccccCccC-CcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 42 TSPTSRCPICLLVLNNRSYTDTCL-HEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~~~~~Cg-H~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.++...|||-++.+.||+++ +-| ++|=+..|.+|+... .+||.=|+++..
T Consensus 888 iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~-----~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSD-----STDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTC-----CBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcC-----CCCCCCCCCCCc
Confidence 46778999999999999995 676 699999999999877 899999888764
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.58 E-value=0.13 Score=42.17 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=39.5
Q ss_pred CCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 42 TSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
..-.+.|||-+..+..|+....|.|.-|++- ..|+........-.||+|.+.+.
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccC
Confidence 3455789999999999998889999988876 23333222234579999987764
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.87 E-value=0.18 Score=41.22 Aligned_cols=55 Identities=18% Similarity=0.367 Sum_probs=40.0
Q ss_pred CCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 41 PTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
...-.+.|||-+..+..|+....|.|.-|++-. .|+........-.||+|.+.+.
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccC
Confidence 334557899999999999988899999887753 3333222234579999988775
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=86.27 E-value=0.61 Score=28.66 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=32.9
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
..+..|.||.+. .+...-..|...||..|+...+...+ ...=.||.|...
T Consensus 10 ~~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCC-CCCEECccccCC
Confidence 345569999764 33334457899999999976544321 223589999653
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.80 E-value=3.7 Score=26.85 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=35.1
Q ss_pred CCCcccccccccccC-----cc-ccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNN-----RS-YTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~-----~~-~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....|.||-+.+.. +. .-..|+--.|..|..--.+.. ...||.|+..+..
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG----~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG----TQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS----CSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc----CccccccCCcccc
Confidence 355789999988551 21 113688889999986533332 3899999988764
No 81
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.61 E-value=0.14 Score=31.03 Aligned_cols=34 Identities=29% Similarity=0.934 Sum_probs=23.7
Q ss_pred ccccccccccc-----CccccCc--cCCcccHhhHHHHHHh
Q psy6056 46 SRCPICLLVLN-----NRSYTDT--CLHEFCFLCIKQWSQI 79 (153)
Q Consensus 46 ~~C~ICl~~~~-----~~~~~~~--CgH~FC~~Ci~~~~~~ 79 (153)
..||-|.-.+. +.+.-.. |++.||+.|+..|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 35888877665 3334334 9999999999888764
No 82
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.28 E-value=1.9 Score=27.94 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=24.4
Q ss_pred CCCCCCcccccccccccCccc--cCccCCcccHhhHHHH
Q psy6056 40 RPTSPTSRCPICLLVLNNRSY--TDTCLHEFCFLCIKQW 76 (153)
Q Consensus 40 ~~~~~~~~C~ICl~~~~~~~~--~~~CgH~FC~~Ci~~~ 76 (153)
++...+..|.||-. +..... -.-|+-.||..|+.+.
T Consensus 10 e~~~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 34457788999964 332222 1258899999999985
No 83
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=80.38 E-value=1.2 Score=27.62 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=21.7
Q ss_pred CcccccccccccCc---cccCccCCcccHhhHH
Q psy6056 45 TSRCPICLLVLNNR---SYTDTCLHEFCFLCIK 74 (153)
Q Consensus 45 ~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~ 74 (153)
+..|.+|...|.-- ---..||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 35799999988632 2223799999999963
No 84
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=79.75 E-value=0.3 Score=26.30 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=11.4
Q ss_pred CCcccccccccccCccc
Q psy6056 44 PTSRCPICLLVLNNRSY 60 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~ 60 (153)
+...||||+..+.++-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 45678888877766544
No 85
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=77.20 E-value=2.7 Score=26.71 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=23.6
Q ss_pred CCCCcccccccccccCc---cccCccCCcccHhhHH
Q psy6056 42 TSPTSRCPICLLVLNNR---SYTDTCLHEFCFLCIK 74 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~ 74 (153)
..+...|.+|...|.-- ---..||+.||..|..
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 34556799999988732 2223799999999964
No 86
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=76.69 E-value=1.7 Score=26.01 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 42 TSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
...+..|.||.+. .+.+.-..|...||..|+..-+... ....-.||.|..
T Consensus 8 ~~~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~-p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKA-PEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSC-CCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCC-CCCceECccccc
Confidence 3456679999873 3333334788899999986532211 223468999964
No 87
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=76.35 E-value=1.6 Score=27.72 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=22.6
Q ss_pred CCCcccccccccccCc---cccCccCCcccHhhHH
Q psy6056 43 SPTSRCPICLLVLNNR---SYTDTCLHEFCFLCIK 74 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~ 74 (153)
.+...|.+|...|.-- ---..||..||..|..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 3345699999988722 1223799999999964
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=76.20 E-value=1.3 Score=30.62 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=22.2
Q ss_pred CCcccccccccccCc---cccCccCCcccHhhHH
Q psy6056 44 PTSRCPICLLVLNNR---SYTDTCLHEFCFLCIK 74 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~ 74 (153)
....|.+|...|.-- ---..||+.||..|..
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 345699999988722 2223799999999953
No 89
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=74.66 E-value=0.4 Score=33.17 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=29.0
Q ss_pred CCCcccccccccccCc---cccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 43 SPTSRCPICLLVLNNR---SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
.....|..|...|.-. ---..||..||..|........ ..|-.|-..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~v-----RVC~~C~~~ 66 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGP-----RLCLLCQRF 66 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----C-----CEEHHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCc-----eECHHHHHH
Confidence 3446799999988632 2223799999999965433333 788888543
No 90
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.80 E-value=2 Score=27.31 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=22.2
Q ss_pred CCCcccccccccccCc---cccCccCCcccHhhHH
Q psy6056 43 SPTSRCPICLLVLNNR---SYTDTCLHEFCFLCIK 74 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~ 74 (153)
.+...|.+|...|.-- ---..||..||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3345699999988622 1223799999999953
No 91
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.60 E-value=0.49 Score=28.52 Aligned_cols=51 Identities=16% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCcccccccccccC---ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVLNN---RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~---~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
.+...|+||...+.+ -+.-..|..-||..|+.--...........||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345679999887642 222236788899999743111000124578999964
No 92
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=73.42 E-value=0.26 Score=31.44 Aligned_cols=16 Identities=25% Similarity=0.717 Sum_probs=13.1
Q ss_pred ccCCcccHhhHHHHHH
Q psy6056 63 TCLHEFCFLCIKQWSQ 78 (153)
Q Consensus 63 ~CgH~FC~~Ci~~~~~ 78 (153)
.|++.||+.|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5999999999876644
No 93
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=73.27 E-value=5.1 Score=26.09 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=29.2
Q ss_pred CCCCCcccccccccccCccc-cCc--cC-CcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 41 PTSPTSRCPICLLVLNNRSY-TDT--CL-HEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~~~~~-~~~--Cg-H~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
...+...| ||.......++ -.. |. ..||..|+. +.. .....-.||.|+.
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~-~p~g~W~Cp~C~~ 84 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTT-KPRGKWFCPRCSQ 84 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSS-CCCSSCCCTTTCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCc-CCCCCEECcCccC
Confidence 33455668 99886543322 124 55 579999985 121 1224578999965
No 94
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=72.97 E-value=3.4 Score=26.67 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=23.4
Q ss_pred CCCcccccccccccC---ccccCccCCcccHhhHHH
Q psy6056 43 SPTSRCPICLLVLNN---RSYTDTCLHEFCFLCIKQ 75 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~---~~~~~~CgH~FC~~Ci~~ 75 (153)
.+...|.+|...|.- .---..||+.||..|...
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 344579999988862 122237999999999754
No 95
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.37 E-value=2.8 Score=31.67 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCCcccccccccccCc---cccCccCCcccHhhHH
Q psy6056 43 SPTSRCPICLLVLNNR---SYTDTCLHEFCFLCIK 74 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~ 74 (153)
.++..|.+|...|.-- ---..||+.||..|..
T Consensus 162 ~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred ccCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 4456899999888721 2224799999999964
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=71.76 E-value=5 Score=24.78 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=28.8
Q ss_pred CCCCcccccccccccCccc-cCc--cC-CcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 42 TSPTSRCPICLLVLNNRSY-TDT--CL-HEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~~-~~~--Cg-H~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
..+...| ||.......++ -.. |. ..||..|+. +.. .....-.||.|+.
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~-~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTT-KPRGKWFCPRCSQ 64 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSS-CCSSCCCCTTTSS
T ss_pred CCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCc-CCCCCEECCCCCc
Confidence 3455678 89875433222 124 65 589999985 221 1224578999965
No 97
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.69 E-value=2.8 Score=31.38 Aligned_cols=32 Identities=19% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCCcccccccccccCc---cccCccCCcccHhhHH
Q psy6056 43 SPTSRCPICLLVLNNR---SYTDTCLHEFCFLCIK 74 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~ 74 (153)
.++..|.+|...|.-- ---..||+.||..|..
T Consensus 159 ~~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 159 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 4567899999988621 2223799999999953
No 98
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=70.68 E-value=2 Score=25.88 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=28.0
Q ss_pred cccccccccccCcc--ccCccCCcccHhhHHHHHHhcCCCCCCcccCc
Q psy6056 46 SRCPICLLVLNNRS--YTDTCLHEFCFLCIKQWSQISSESSPALCKMS 91 (153)
Q Consensus 46 ~~C~ICl~~~~~~~--~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~C 91 (153)
..|-.|...+.+.. .-..|++.||.+|= .++... ...||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~----Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDS----LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTT----SCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHHhh----ccCCcCC
Confidence 34999998886543 23579999999993 222222 3688887
No 99
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=66.82 E-value=1.2 Score=27.70 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCcccccccccccC--ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccc
Q psy6056 43 SPTSRCPICLLVLNN--RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRL 95 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~--~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 95 (153)
.+...|+||...... -+.-..|.-.||..|+..-.... ....-.||.|+..+
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~-~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPP-EEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCC-SSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCC-CCCCEEChhccCch
Confidence 445679999876432 22334688899999985321110 11346899997654
No 100
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=66.47 E-value=8.1 Score=26.81 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=31.5
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHH-----H-HhcCCCCCCcccCcccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQW-----S-QISSESSPALCKMSKQR 94 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~-----~-~~~~~~~~~~CP~Cr~~ 94 (153)
.+..|.||.+--. ...-..|-..||..||.+- + ........=.|++|+..
T Consensus 56 ~~~~C~vC~dGG~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 56 MDEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBSSCTTTCCCSE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCcCeecCCCCe-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3456999987422 2222478899999999874 2 21112345689999643
No 101
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.22 E-value=3 Score=27.14 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=34.3
Q ss_pred CCCCCCCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 37 DGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 37 ~~~~~~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
........+..|.||.+. .+-..-..|--.|+..|+..-+... ....-.||.|..
T Consensus 17 ~~~~~d~n~~~C~vC~~~-g~LL~CD~C~~~fH~~Cl~PpL~~~-P~g~W~C~~C~~ 71 (88)
T 1fp0_A 17 EFGTLDDSATICRVCQKP-GDLVMCNQCEFCFHLDCHLPALQDV-PGEEWSCSLCHV 71 (88)
T ss_dssp CCCSSSSSSSCCSSSCSS-SCCEECTTSSCEECTTSSSTTCCCC-CSSSCCCCSCCC
T ss_pred cccccCCCCCcCcCcCCC-CCEEECCCCCCceecccCCCCCCCC-cCCCcCCccccC
Confidence 334445666789999874 2333334688889999986533221 223457999964
No 102
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.84 E-value=3.9 Score=26.33 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=22.3
Q ss_pred CcccccccccccCc---cccCccCCcccHhhHHH
Q psy6056 45 TSRCPICLLVLNNR---SYTDTCLHEFCFLCIKQ 75 (153)
Q Consensus 45 ~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~~ 75 (153)
...|.+|...|.-- ---..||..||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34699999988732 12237999999999643
No 103
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=65.10 E-value=2.1 Score=28.16 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=27.2
Q ss_pred CcccccccccccCc--cccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 45 TSRCPICLLVLNNR--SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 45 ~~~C~ICl~~~~~~--~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
...| ||-....+. +.-..|.-.|+..|+..-.. .....-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~--~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQ--HIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTT--SCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCcc--CCCCCEECCCCcC
Confidence 3457 786654432 22236778899999743111 1223579999963
No 104
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=64.91 E-value=2.9 Score=29.89 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=31.2
Q ss_pred CCccccccccccc----CccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 44 PTSRCPICLLVLN----NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 44 ~~~~C~ICl~~~~----~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
.+..|.+|...|. ...+-..|.|.+|..|-. |.. ....-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~---~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHP---EEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCS---SSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccC---CCCcEeeHHHHHH
Confidence 4677999999875 223334799999999962 222 2234678888643
No 105
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=63.80 E-value=2.9 Score=27.88 Aligned_cols=13 Identities=31% Similarity=0.994 Sum_probs=11.3
Q ss_pred cccHhhHHHHHHh
Q psy6056 67 EFCFLCIKQWSQI 79 (153)
Q Consensus 67 ~FC~~Ci~~~~~~ 79 (153)
-||..||.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999874
No 106
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=63.77 E-value=2.9 Score=27.92 Aligned_cols=13 Identities=31% Similarity=0.966 Sum_probs=11.3
Q ss_pred cccHhhHHHHHHh
Q psy6056 67 EFCFLCIKQWSQI 79 (153)
Q Consensus 67 ~FC~~Ci~~~~~~ 79 (153)
-||..||.+|...
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
No 107
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=62.18 E-value=1.9 Score=31.39 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=31.5
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRL 95 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 95 (153)
.+..|.||.+. .+...-..|.-.||..|+..-+... ..+.-.||.|+..-
T Consensus 3 ~~~~C~~C~~~-g~ll~Cd~C~~~~H~~C~~p~l~~~-p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG-GELLCCEKCPKVFHLSCHVPTLTNF-PSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC-SSCEECSSSSCEECTTTSSSCCSSC-CSSCCCCTTTSCSS
T ss_pred CCCccccCCCC-CeeeecCCCCcccCccccCCCCCCC-CCCCEECccccCcc
Confidence 44669999864 3333334688899999975533321 12236799997543
No 108
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=60.50 E-value=2.6 Score=25.19 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
..+..|.||.+. .+.+.-..|...||..|+..-+... ....-.||.|...
T Consensus 7 ~~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~-p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEI-PNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSC-CSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcC-CCCccCChhhcCc
Confidence 345669999863 3333334788899999986422211 1223579999643
No 109
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=60.31 E-value=1.6 Score=32.41 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
.+..|.+|.+.- +...-..|...||..|+..-+... ..+.-.||.|+..
T Consensus 6 ~~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~-p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNGG-DLLCCEKCPKVFHLTCHVPTLLSF-PSGDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCCE-EEEECSSSSCEECTTTSSSCCSSC-CSSCCCCTTTSCS
T ss_pred CCCCCCCCCCCC-ceEEcCCCCCccCCccCCCCCCCC-CCCCEEeCceeCc
Confidence 445699998642 333334788899999986533321 1223689999754
No 110
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.19 E-value=13 Score=23.13 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCCccccccccccc--C-ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccc
Q psy6056 43 SPTSRCPICLLVLN--N-RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRL 95 (153)
Q Consensus 43 ~~~~~C~ICl~~~~--~-~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 95 (153)
.....| ||..... . -+.-..|..-||..|+.--...........||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344556 8988763 1 22333688889999974311111112458999997643
No 111
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=59.47 E-value=4.5 Score=29.73 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=30.9
Q ss_pred CcccccccccccCcc------ccCccCCcccHhhHHH------HHHhcCCCCCCcccCcccccc
Q psy6056 45 TSRCPICLLVLNNRS------YTDTCLHEFCFLCIKQ------WSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~------~~~~CgH~FC~~Ci~~------~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
+..||||...+.+.. .-..|..-||..|+.- -....+......||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 346999998876432 2236888999999632 111000001379999986543
No 112
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.66 E-value=4.1 Score=28.44 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=30.4
Q ss_pred CCccccccccccc----CccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 44 PTSRCPICLLVLN----NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 44 ~~~~C~ICl~~~~----~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
.+..|.+|...+. ....-..|.|.+|..|-..-... .....-.|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~-~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNN-RPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCS-SSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCC-CCccceechhhHHH
Confidence 4577999999984 12233468999999995321110 11224578888653
No 113
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=58.48 E-value=12 Score=26.40 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=32.0
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHH------hcCCCCCCcccCccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQ------ISSESSPALCKMSKQ 93 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~------~~~~~~~~~CP~Cr~ 93 (153)
.+..|.||.+-- +-..-..|-..||..||..-+. .......-.||+|+.
T Consensus 62 ~~d~C~vC~~GG-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGG-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCS-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCC-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 456799998743 3333357899999999986432 101233468999973
No 114
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=56.86 E-value=2.3 Score=34.62 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=0.0
Q ss_pred CCCcccccccccccCc---cccCccCCcccHhhHHHHHHhcC--CCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVLNNR---SYTDTCLHEFCFLCIKQWSQISS--ESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~---~~~~~CgH~FC~~Ci~~~~~~~~--~~~~~~CP~Cr~ 93 (153)
.....|.+|...|.-- ---..||+.||..|......... ......|-.|-.
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~ 428 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFG 428 (434)
T ss_dssp --------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHH
Confidence 4456799999887621 22237999999999865432110 112466777743
No 115
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=56.35 E-value=0.5 Score=31.52 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=27.6
Q ss_pred cccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 46 SRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 46 ~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..||+|...+.-. =++.+|..|-..+.+ . ..||.|.+++..
T Consensus 33 ~~CP~Cq~eL~~~-----g~~~hC~~C~~~f~~-~-----a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQD-----NGHARCRSCGEFIEM-K-----ALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEE-----TTEEEETTTCCEEEE-E-----EECTTTCSBCEE
T ss_pred ccCccCCCcceec-----CCEEECccccchhhc-c-----ccCcchhhHHHH
Confidence 6799999876521 134458888544333 2 599999988764
No 116
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.24 E-value=15 Score=22.33 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=29.8
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....|..|-+.+....+ ..-+..||..| ..|-.|+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~~~-~a~~~~~H~~C-------------F~C~~C~~~L~~ 53 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFV-KLRDRHRHPEC-------------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCSSSCCCCCSSCE-ECSSCEECTTT-------------TSCSSSCCCHHH
T ss_pred CCCCccccCCCCccCcEE-EECcceeCcCc-------------CeeCCCCCCCCC
Confidence 445679999998876544 45677888887 478888877653
No 117
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=55.53 E-value=0.8 Score=29.38 Aligned_cols=29 Identities=28% Similarity=0.789 Sum_probs=19.2
Q ss_pred ccccccccc-----CccccCccCCcccHhhHHHH
Q psy6056 48 CPICLLVLN-----NRSYTDTCLHEFCFLCIKQW 76 (153)
Q Consensus 48 C~ICl~~~~-----~~~~~~~CgH~FC~~Ci~~~ 76 (153)
||-|-..+. ..+.-..|++.||+.|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 776655332 12232359999999998887
No 118
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=55.08 E-value=7.9 Score=33.95 Aligned_cols=54 Identities=24% Similarity=0.541 Sum_probs=36.4
Q ss_pred CCCCcccccccccccCcc---------ccCccCCcc--------------------cHhhHHHHHHhcC---CCCCCccc
Q psy6056 42 TSPTSRCPICLLVLNNRS---------YTDTCLHEF--------------------CFLCIKQWSQISS---ESSPALCK 89 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~---------~~~~CgH~F--------------------C~~Ci~~~~~~~~---~~~~~~CP 89 (153)
..+--+|+-|+..+.+|. .-+.||-+| |..|..+|..-.. -.+...||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 345568999999988652 223677666 9999999865211 23458999
Q ss_pred Cccccc
Q psy6056 90 MSKQRL 95 (153)
Q Consensus 90 ~Cr~~~ 95 (153)
.|--.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 995444
No 119
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=53.38 E-value=16 Score=24.15 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=21.3
Q ss_pred CCCccccccccccc--------CccccCccCCcccHhhHH
Q psy6056 43 SPTSRCPICLLVLN--------NRSYTDTCLHEFCFLCIK 74 (153)
Q Consensus 43 ~~~~~C~ICl~~~~--------~~~~~~~CgH~FC~~Ci~ 74 (153)
.+...|.+|+..-. +-+.-..|+..||..||.
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 34567999987521 222234789999999984
No 120
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.22 E-value=29 Score=21.48 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=30.4
Q ss_pred CCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 42 TSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
......|..|-+.+....+ ..-+..||..| ..|-.|...+..
T Consensus 22 ~~~~~~C~~C~~~I~~~~~-~a~~~~~H~~C-------------F~C~~C~~~L~~ 63 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVV-KARDKYRHPEC-------------FVCADCNLNLKQ 63 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCE-ESSSCEECTTT-------------CCCSSSCCCTTT
T ss_pred CCcCCCcccCCCEecccEE-EECCceECccC-------------CEecCCCCCCCC
Confidence 3455679999998886544 45677888888 578888877654
No 121
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.22 E-value=26 Score=21.91 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=18.3
Q ss_pred CCcccccccccccCccccCccCCcccHh
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFL 71 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~ 71 (153)
....|..|...+......=.||..||..
T Consensus 24 ~~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeecCCCCEechh
Confidence 4457999988655322323599999854
No 122
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=50.98 E-value=13 Score=33.19 Aligned_cols=54 Identities=20% Similarity=0.457 Sum_probs=35.5
Q ss_pred CCCCcccccccccccCcc---------ccCccCCcc--------------------cHhhHHHHHHhcC---CCCCCccc
Q psy6056 42 TSPTSRCPICLLVLNNRS---------YTDTCLHEF--------------------CFLCIKQWSQISS---ESSPALCK 89 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~---------~~~~CgH~F--------------------C~~Ci~~~~~~~~---~~~~~~CP 89 (153)
.++-.+|+-|+..+.+|. .-+.||-+| |..|..+|..-.. -.+...||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 345568999999988762 223567555 9999998854211 23457899
Q ss_pred Cccccc
Q psy6056 90 MSKQRL 95 (153)
Q Consensus 90 ~Cr~~~ 95 (153)
.|--.+
T Consensus 188 ~CGP~l 193 (761)
T 3vth_A 188 DCGPSL 193 (761)
T ss_dssp TTSCCE
T ss_pred ccCCee
Confidence 995433
No 123
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.84 E-value=5.2 Score=26.47 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=23.6
Q ss_pred CCCcccccccccccC--ccccCccCCcccHhhHHHH
Q psy6056 43 SPTSRCPICLLVLNN--RSYTDTCLHEFCFLCIKQW 76 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~--~~~~~~CgH~FC~~Ci~~~ 76 (153)
..+..|.||.+.-.. -+.-..|+..||..|+...
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~ 40 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIA 40 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCc
Confidence 456679999775432 1333578999999998654
No 124
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=50.76 E-value=13 Score=33.15 Aligned_cols=54 Identities=19% Similarity=0.454 Sum_probs=36.1
Q ss_pred CCCCcccccccccccCcc---------ccCccCCcc--------------------cHhhHHHHHHhcC---CCCCCccc
Q psy6056 42 TSPTSRCPICLLVLNNRS---------YTDTCLHEF--------------------CFLCIKQWSQISS---ESSPALCK 89 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~---------~~~~CgH~F--------------------C~~Ci~~~~~~~~---~~~~~~CP 89 (153)
..+-.+|+-|+..+.+|. .-+.||-+| |..|-.+|..-.. -.+...||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 345568999999988762 223677776 9999988864211 23457899
Q ss_pred Cccccc
Q psy6056 90 MSKQRL 95 (153)
Q Consensus 90 ~Cr~~~ 95 (153)
.|--.+
T Consensus 183 ~CGP~l 188 (772)
T 4g9i_A 183 VCGPSY 188 (772)
T ss_dssp TTSCCE
T ss_pred cCCceE
Confidence 995443
No 125
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.66 E-value=25 Score=21.85 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=28.3
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....|..|-+.+.....+..-+..||..| ..|-.|...+..
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~C-------------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISC-------------FRCSYCNNKLSL 54 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTT-------------CBCTTTCCBCCT
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCC-------------CeeCCCCCCCCC
Confidence 445679999988864333345677777777 467777766654
No 126
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.76 E-value=17 Score=22.27 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=28.1
Q ss_pred CCCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 42 TSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
......|+-|-+.+.....+..-+..||..| ..|-.|+..+.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C-------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSC-------------FKCQTCSVILT 53 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTT-------------CBCSSSCCBCS
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCccccccc-------------CCcCcCCCCcC
Confidence 3455679999988763333334566777777 57888877665
No 127
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=48.03 E-value=20 Score=22.83 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCCCCccccccccccc----CccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 41 PTSPTSRCPICLLVLN----NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~----~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
...++..|.||.+.-. .-+.-..|.-.|+..|+..-. .....-.||.|...
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHH
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc---cCCCceECccccCc
Confidence 3456678999987531 222334788889999985421 11234689999654
No 128
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=47.74 E-value=1.1 Score=35.71 Aligned_cols=47 Identities=17% Similarity=0.348 Sum_probs=33.3
Q ss_pred CCCcccccccccccCccccC---ccC--CcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTD---TCL--HEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~---~Cg--H~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
.....||+|-....-.++.. .=| |.+|..|-..|.... ..||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R-----~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR-----IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCT-----TSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC-----cCCcCCCCC
Confidence 34567999988765443321 234 567999999998877 899999654
No 129
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=47.16 E-value=3.2 Score=25.45 Aligned_cols=48 Identities=15% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCCcccccccccccCc-c-ccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVLNNR-S-YTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~-~-~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
.+...| ||.....+. + .-..|..-||..|+.--.. .......||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~--~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS--NVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT--SCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc--cCCCcEECCCCCC
Confidence 345568 998765532 2 2236788899999742111 1234578998864
No 130
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=45.95 E-value=28 Score=21.19 Aligned_cols=48 Identities=23% Similarity=0.321 Sum_probs=27.9
Q ss_pred CcccccccccccCc--cccCccCCcccHhhHHHHHHhc----CCCCCCcccCccc
Q psy6056 45 TSRCPICLLVLNNR--SYTDTCLHEFCFLCIKQWSQIS----SESSPALCKMSKQ 93 (153)
Q Consensus 45 ~~~C~ICl~~~~~~--~~~~~CgH~FC~~Ci~~~~~~~----~~~~~~~CP~Cr~ 93 (153)
...| ||....... +.-..|..-||..|+.--.... .......||.|+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 4557 898876532 2223688889999974211100 0112488999964
No 131
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.90 E-value=33 Score=20.77 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=29.2
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....|+-|-+.+.+..+ ..-+..||..| ..|-.|+.++..
T Consensus 14 ~~~~C~~C~~~I~~~~v-~a~~~~~H~~C-------------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPL-IFKNDPYHPDH-------------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCSCCC-CCSSSCCCTTT-------------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEecceEE-EECcceeCCCC-------------CEeCCCCCccCC
Confidence 34679999998876554 45677777777 578888877764
No 132
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=44.91 E-value=7.1 Score=22.02 Aligned_cols=46 Identities=17% Similarity=0.381 Sum_probs=27.2
Q ss_pred cccccccccc--CccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 47 RCPICLLVLN--NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 47 ~C~ICl~~~~--~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
.|.||...-. +-+.-..|...||..|+..=+... ....-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~-P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEV-PDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSC-CSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCC-CCCcEECcCccc
Confidence 4888876432 223334788899999985422211 122457999964
No 133
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=44.86 E-value=14 Score=30.30 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=28.9
Q ss_pred CcccccccccccCccccC--ccCCcccHhhHHHHHHhc-----CCCCCCcccCccc
Q psy6056 45 TSRCPICLLVLNNRSYTD--TCLHEFCFLCIKQWSQIS-----SESSPALCKMSKQ 93 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~--~CgH~FC~~Ci~~~~~~~-----~~~~~~~CP~Cr~ 93 (153)
+..|.||-+-- +...-. .|...||..||..++... ...+.=.|=+|..
T Consensus 93 ~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 44577776632 222223 788999999999875210 0223357888853
No 134
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=44.70 E-value=13 Score=26.67 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=27.6
Q ss_pred CcccccccccccCccccC--ccCCcccHhhHHHHHHhc-----CCCCCCcccCcc
Q psy6056 45 TSRCPICLLVLNNRSYTD--TCLHEFCFLCIKQWSQIS-----SESSPALCKMSK 92 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~--~CgH~FC~~Ci~~~~~~~-----~~~~~~~CP~Cr 92 (153)
+..|.||-+-- +...-. .|...||..||..++... .....=.|=+|.
T Consensus 79 ~~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 79 QSYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp BSSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred cceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 34577776532 222212 588899999998864321 123345688885
No 135
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=43.44 E-value=9.8 Score=25.30 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=32.3
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
-..|..|...+........=|..||..|..+. .. ..|..|.++|..
T Consensus 30 CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~--~~-----~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGEIYVMVNDKPVCKPCYVKN--HA-----VVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTSEEEEETTEEEEHHHHHHH--SC-----CBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcCEEEeECCEEechHHhCcC--cC-----ccCcccCCcCCc
Confidence 35788898887754332345778999987542 23 789999988874
No 136
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=43.38 E-value=3.1 Score=26.27 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=26.7
Q ss_pred ccccccccccCc--cccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 47 RCPICLLVLNNR--SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 47 ~C~ICl~~~~~~--~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
.|.||...-... ..-..|...||..|+..-+...+.+..=.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665543211 22236788899999875443322332257999874
No 137
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=43.34 E-value=13 Score=22.41 Aligned_cols=32 Identities=25% Similarity=0.576 Sum_probs=20.5
Q ss_pred CCCcccccccccccCc---cccC-ccCCcccHhhHH
Q psy6056 43 SPTSRCPICLLVLNNR---SYTD-TCLHEFCFLCIK 74 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~---~~~~-~CgH~FC~~Ci~ 74 (153)
.+...|++|..++.+- +.-. .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3445799999987532 2223 677789999973
No 138
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=42.88 E-value=10 Score=22.53 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=30.1
Q ss_pred CCCccccccccccc----CccccCccCCcccHhhHHHHHHh--cCCCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVLN----NRSYTDTCLHEFCFLCIKQWSQI--SSESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~~----~~~~~~~CgH~FC~~Ci~~~~~~--~~~~~~~~CP~Cr~ 93 (153)
.++..|.||..... ..+.-..|.-.||..|+..-+.. ......-.||.|..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 44567999987532 22333478889999998642111 00112357888854
No 139
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.51 E-value=32 Score=21.18 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCCcccccccccccCcc--ccC--ccCCcccHhhHHHHHHhc----CCCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVLNNRS--YTD--TCLHEFCFLCIKQWSQIS----SESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~--~~~--~CgH~FC~~Ci~~~~~~~----~~~~~~~CP~Cr~ 93 (153)
.....| ||-....+.. .-. .|..-||..|+.--.... .......||.|+.
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 455678 8988633222 222 588899999973211100 0123578999964
No 140
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.48 E-value=45 Score=20.30 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=28.1
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.....|..|-+.+.....+..-+..||..| ..|-.|+..+..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~C-------------F~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSC-------------FRCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTT-------------CBCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCc-------------CEEcCCCCCcCC
Confidence 345679999988754323234566777777 477788777654
No 141
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=41.51 E-value=5.6 Score=28.38 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCCcccccccccccC---ccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 43 SPTSRCPICLLVLNN---RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~---~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
.....| ||.....+ -+.-..|...||..|+.--.........-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345678 99886532 2233468889999998421111112345789999753
No 142
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=40.63 E-value=36 Score=20.65 Aligned_cols=29 Identities=21% Similarity=0.498 Sum_probs=19.2
Q ss_pred CCCcccccccccccCccccCccCCcccHh
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFL 71 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~ 71 (153)
.....|..|-..+.-....=.||..||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CcCCcChhhCCccCccCEEeecCCEeccc
Confidence 34467999988765432223699999964
No 143
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.45 E-value=18 Score=23.19 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=30.9
Q ss_pred CCCCCccccccccccc--CccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 41 PTSPTSRCPICLLVLN--NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 41 ~~~~~~~C~ICl~~~~--~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
...++..|.||...-. ..+.-..|...||..|+..-+... ....=.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~-P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEI-PRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSC-CSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccC-CCCCcCCccCcC
Confidence 3345567999987543 223334788889999985322211 112346999964
No 144
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=39.96 E-value=19 Score=24.20 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=29.6
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
....|.-|-+.+.+..++..-+..||..| ..|-.|+..+.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~C-------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLYAMDSYWHSRC-------------LKCSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEEETTEEEETTT-------------SBCTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEEeCCcEEcccc-------------cCcCcCCCccc
Confidence 34679999998886643455677788887 57888887775
No 145
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=39.42 E-value=17 Score=21.67 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
..+..|.||.+. .+.+.-..|.-.||..|+..-+... ....-.||.|..
T Consensus 6 ~~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~ppl~~~-P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG-GELICCDGCPRAFHLACLSPPLREI-PSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC-SSCEECSSCCCEECTTTSSSCCSSC-CSSCCCCHHHHH
T ss_pred CCCCCCccCCCC-CCEEEcCCCChhhcccccCCCcCcC-CCCCeECccccC
Confidence 355679999874 3434444788889999986422211 122357999953
No 146
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.29 E-value=28 Score=20.43 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=26.4
Q ss_pred CcccccccccccC---ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNN---RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~---~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...|+.|-+.+.. ..++..-+..||..| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C-------------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC-------------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT-------------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc-------------CEeccCCCcCCC
Confidence 4568999888774 233344677777777 477788776653
No 147
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.00 E-value=5.7 Score=24.94 Aligned_cols=47 Identities=17% Similarity=0.301 Sum_probs=27.8
Q ss_pred cccccccccc--CccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 47 RCPICLLVLN--NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 47 ~C~ICl~~~~--~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
.|.||...-. ..+.-..|...||..|+..-+...+.+..=.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6888975322 2233347888999999864222222221357888863
No 148
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.03 E-value=41 Score=20.38 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=18.4
Q ss_pred CCcccccccccccCccccCccCCcccHh
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFL 71 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~ 71 (153)
....|..|-..+.-....=.||..||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 4457999988755432222689999854
No 149
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=37.36 E-value=8.7 Score=28.08 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=29.4
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
+..|.+|.+.- +-..-..|-..||..|+..-+... ..+.-.||.|+..
T Consensus 2 ~~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~-p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDV-PGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCS-SCCCCTTTCCBCCSTTSTTCCSSC-CCTTCCTTTTSCS
T ss_pred CCcCccCCCCC-ceeECCCCCchhccccCCCCcccC-CCCCCCCcCccCC
Confidence 34599998642 333334688889999985422211 1233579999754
No 150
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=37.31 E-value=17 Score=22.31 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=19.9
Q ss_pred CCcccccccccccCccccCcc-CCcccHhhHHH
Q psy6056 44 PTSRCPICLLVLNNRSYTDTC-LHEFCFLCIKQ 75 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~C-gH~FC~~Ci~~ 75 (153)
+..-|.||.+.-.-.- .-| +-.||..|..+
T Consensus 7 e~pWC~ICneDAtlrC--~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 7 GLPWCCICNEDATLRC--AGCDGDLYCARCFRE 37 (67)
T ss_dssp CCSSCTTTCSCCCEEE--TTTTSEEECSSHHHH
T ss_pred CCCeeEEeCCCCeEEe--cCCCCceehHHHHHH
Confidence 4456999999733222 257 67899888654
No 151
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=37.26 E-value=26 Score=17.66 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=15.4
Q ss_pred ccccccccccCccccCccCCcccHhh
Q psy6056 47 RCPICLLVLNNRSYTDTCLHEFCFLC 72 (153)
Q Consensus 47 ~C~ICl~~~~~~~~~~~CgH~FC~~C 72 (153)
.|+.|-......-.+..=|..||..|
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred cCCccCCEEecceeEEECCeEecccC
Confidence 58888776553333234466677666
No 152
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.13 E-value=17 Score=20.89 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=29.3
Q ss_pred CCCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
..+..|.||.+. .+.+.-..|...||..|+..-+... ....-.||.|..
T Consensus 7 ~~~~~C~vC~~~-g~ll~Cd~C~~~~H~~Cl~ppl~~~-p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTI-PKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS-SCCEECSSSSCEECSSSSSSCCCSC-CCSSCCCHHHHC
T ss_pred CCCCCCccCCCC-CeEEEcCCCCcceECccCCCCcCCC-CCCceEChhhhC
Confidence 345669999874 3333334788889999986422211 112346888853
No 153
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.55 E-value=8.2 Score=24.69 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=31.7
Q ss_pred CCccccccccccc----CccccCccCCcccHhhHHHHHHh---cCCCCCCcccCccccc
Q psy6056 44 PTSRCPICLLVLN----NRSYTDTCLHEFCFLCIKQWSQI---SSESSPALCKMSKQRL 95 (153)
Q Consensus 44 ~~~~C~ICl~~~~----~~~~~~~CgH~FC~~Ci~~~~~~---~~~~~~~~CP~Cr~~~ 95 (153)
.+..|.||...-. ..+.-..|...||..|+..-+.. ......-.|+.|....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 4567999987532 22333478889999998653221 0112335899996543
No 154
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=35.57 E-value=8.8 Score=29.19 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=25.9
Q ss_pred ccccccccccc--CccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 46 SRCPICLLVLN--NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 46 ~~C~ICl~~~~--~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
..|.+|...-. ....-..|...||..|+..-+...+.+..=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 36888875321 2233347888999999864332222221347999964
No 155
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.55 E-value=19 Score=21.07 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=25.5
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...|..|-+.+.+..+ ..-+..||..| ..|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C-------------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVI-KAMNNSWHPEC-------------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCSCCE-EETTEEECTTT-------------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecceEE-EECcccccccC-------------CEeCCCCCcCCC
Confidence 4568888887775443 44566677666 467777766654
No 156
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=35.50 E-value=6.5 Score=24.12 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=26.5
Q ss_pred cccccccccc--CccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 47 RCPICLLVLN--NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 47 ~C~ICl~~~~--~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
.|.||...-. ..+.-..|...||..|+..-+...+.+..=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4667764322 2222236888999999864222222222458998864
No 157
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=35.00 E-value=22 Score=23.61 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=19.7
Q ss_pred ccccccccccc---------CccccCccCCcccHhhHHH
Q psy6056 46 SRCPICLLVLN---------NRSYTDTCLHEFCFLCIKQ 75 (153)
Q Consensus 46 ~~C~ICl~~~~---------~~~~~~~CgH~FC~~Ci~~ 75 (153)
..|.||+..-. +-+.-..|+..||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 35888987531 2223347889999999864
No 158
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=34.53 E-value=8.2 Score=24.58 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=26.1
Q ss_pred cccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 46 SRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 46 ~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
..|..|...+........=|..||..|..+ .. ...|..|.+.|.
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~--~~-----~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTR--ED-----SPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTT--CC-----CCBCSSSCCBCC
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhh--hc-----CCccccCCCccc
Confidence 457777777654433233466777777532 11 267888877665
No 159
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.90 E-value=41 Score=19.98 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=26.6
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
...|+-|-..+....+ ..-+..||..| ..|-.|..++.
T Consensus 5 ~~~C~~C~~~I~~~~v-~a~~~~wH~~C-------------F~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGRVL-EAGEKHYHPSC-------------ALCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSCCB-CCSSCCBCTTT-------------SCCSSSCCCCC
T ss_pred cCCcccCCCEecCeeE-EeCCCCCCCCc-------------CEeCCCCCCCC
Confidence 3468889888776444 55677777777 46777877665
No 160
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.42 E-value=34 Score=19.90 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=25.1
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
...|..|-+.+....+ ..-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C-------------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGV-TYREQPWHKEC-------------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEE-ESSSSEEETTT-------------SBCSSSCCBCT
T ss_pred CCCCcccCCeeccceE-EECccccCCCC-------------CccCCCCCcCC
Confidence 3468888887765443 44567777777 46777776664
No 161
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.37 E-value=70 Score=19.91 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=19.1
Q ss_pred CCCcccccccccccCccccCccCCcccHh
Q psy6056 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFL 71 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~~~~CgH~FC~~ 71 (153)
.....|..|-..+.-....=.||..||..
T Consensus 23 ~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred ccCccchhhcCcccccceEeccCCEeccc
Confidence 34467999987755433323699999854
No 162
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=32.69 E-value=25 Score=20.47 Aligned_cols=49 Identities=14% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
.+..|.||... .+-+.-..|.-.||..|+..-+... ....-.||.|...
T Consensus 4 ~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~-p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTI-PKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC-SSCEECSSSSCEECGGGSSSCCSSC-CCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC-CcEEEcCCCCcCEECCcCCCCcCCC-CCCceEChhccCh
Confidence 45669999874 3333434788899999986422211 1234579998654
No 163
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.54 E-value=58 Score=20.39 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=20.5
Q ss_pred CCCCcccccccccccCc----cccCccCCcccHhh
Q psy6056 42 TSPTSRCPICLLVLNNR----SYTDTCLHEFCFLC 72 (153)
Q Consensus 42 ~~~~~~C~ICl~~~~~~----~~~~~CgH~FC~~C 72 (153)
...+..|..|.+.|.-. .+-..|.|..|..|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 45667899999987722 22235777777666
No 164
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.50 E-value=32 Score=20.10 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=26.9
Q ss_pred CcccccccccccCc-cccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNR-SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~-~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...|..|-+.+... .++..-+..||..| ..|-.|..++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C-------------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC-------------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT-------------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCccc-------------CeECCCCCcCCC
Confidence 35699998887732 33345677788777 477788776653
No 165
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.01 E-value=28 Score=20.75 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=27.5
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...|+.|-+.+.....+..-+..||..| -.|..|+..+..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C-------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC-------------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT-------------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC-------------CCCCCCCCccCC
Confidence 4569999988773323345577777777 578888877654
No 166
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.57 E-value=29 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=16.5
Q ss_pred ccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccc
Q psy6056 58 RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94 (153)
Q Consensus 58 ~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 94 (153)
+..-..||+.|+ . .......||.|+..
T Consensus 67 p~~C~~CG~~F~--------~--~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFK--------A--EINIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCC--------C--CSSCCSSCSSSCCC
T ss_pred CcChhhCcCeec--------c--cCCCCCCCcCCCCC
Confidence 333357999992 1 12223799999853
No 167
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.55 E-value=2.4 Score=27.24 Aligned_cols=41 Identities=32% Similarity=0.635 Sum_probs=24.7
Q ss_pred cccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 46 SRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 46 ~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..||.|...+.-.. ++.+|..|-..+.. . ..||.|.+++..
T Consensus 3 ~~CP~C~~~l~~~~-----~~~~C~~C~~~~~~-~-----afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNG-----DTAHCETCAKDFSL-Q-----ALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECS-----SEEECTTTCCEEEE-E-----EECSSSCSCCCE
T ss_pred CCCCCCCCccccCC-----CceECccccccCCC-c-----ccCcchhhHHHH
Confidence 56999988765211 24457777433222 2 489999877754
No 168
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.12 E-value=38 Score=20.36 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=26.1
Q ss_pred cccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 46 SRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 46 ~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
..|+.|-+.+.+..+ ..-+..||..| -.|-.|...+.
T Consensus 16 ~~C~~C~~~I~~~~~-~a~~~~~H~~C-------------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFM-VAGEFKYHPEC-------------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSCCB-CCTTCCBCTTS-------------CBCTTTCCBCC
T ss_pred CcCccCCCCcCceEE-EECCceecccc-------------CCccCCCCccC
Confidence 469999888775544 45677777777 47778877664
No 169
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.72 E-value=29 Score=21.52 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=29.1
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....|+.|-+.+....+ ..-+..||..| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~~~v-~a~~~~~H~~C-------------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFL-VALGKSWHPEE-------------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEE-EETTEEECTTT-------------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEE-EECCccccccC-------------CccCCCCCCCCC
Confidence 44679999998876554 45677788777 578888877653
No 170
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.66 E-value=21 Score=23.72 Aligned_cols=47 Identities=13% Similarity=-0.034 Sum_probs=31.0
Q ss_pred cccccccccccC--ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 46 SRCPICLLVLNN--RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 46 ~~C~ICl~~~~~--~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..|..|-..+.+ ......=|..||..|..+....+ ..|..|..+|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~-----~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-----GAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC-----CSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC-----CccccCCCCcCc
Confidence 468888887752 22223456788999876644422 389999887764
No 171
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.40 E-value=16 Score=18.49 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=6.9
Q ss_pred cccccccccccCc
Q psy6056 46 SRCPICLLVLNNR 58 (153)
Q Consensus 46 ~~C~ICl~~~~~~ 58 (153)
..|+||...+.++
T Consensus 4 ~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 4 FCCPKCQYQAPDM 16 (28)
T ss_dssp EECTTSSCEESSH
T ss_pred ccCccccccCcCh
Confidence 4566665554443
No 172
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=28.91 E-value=23 Score=23.30 Aligned_cols=51 Identities=16% Similarity=0.340 Sum_probs=29.9
Q ss_pred CcccccccccccCc---cccC-ccCCcccHhhHHH----HHHh-cCCCCCCcccCccccc
Q psy6056 45 TSRCPICLLVLNNR---SYTD-TCLHEFCFLCIKQ----WSQI-SSESSPALCKMSKQRL 95 (153)
Q Consensus 45 ~~~C~ICl~~~~~~---~~~~-~CgH~FC~~Ci~~----~~~~-~~~~~~~~CP~Cr~~~ 95 (153)
...|+||...+.+- +.-. .|.--||..|+.- .... ......-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45699999986422 2222 5778899999732 1110 0011237899997543
No 173
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.46 E-value=30 Score=19.95 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=26.6
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...|+.|-+.+....+ ..-+..||..| -.|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C-------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVV-NAMGKQWHVEH-------------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEE-CCTTSBEETTT-------------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecceEE-EECccccccCc-------------CEECCCCCCCCC
Confidence 3568889888775443 45677777777 477788776653
No 174
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=27.73 E-value=11 Score=22.21 Aligned_cols=46 Identities=22% Similarity=0.453 Sum_probs=26.4
Q ss_pred CCcccccccccccCccc-cCc--cC-CcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 44 PTSRCPICLLVLNNRSY-TDT--CL-HEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~-~~~--Cg-H~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
+...| ||.......++ -.. |. ..||..|+. +... ....-.||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~-p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTK-PRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSC-CSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcC-CCCCEECcCccC
Confidence 44567 89875433222 124 55 579999985 2211 224568998854
No 175
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.55 E-value=32 Score=19.98 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=23.1
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
...|+.|-+.+....+ ..-+..||..| ..|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C-------------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGI-TYQDQPWHADC-------------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCE-EETTEEECTTT-------------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCcceE-EECccccccCc-------------CEECCCCCCCC
Confidence 3458888777664433 34556666666 46667766654
No 176
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=26.81 E-value=40 Score=20.19 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=9.4
Q ss_pred CCCCccccccccc
Q psy6056 42 TSPTSRCPICLLV 54 (153)
Q Consensus 42 ~~~~~~C~ICl~~ 54 (153)
..+..+|.||+..
T Consensus 6 ~~d~~~C~iC~KT 18 (62)
T 2a20_A 6 KGDAPTCGICHKT 18 (62)
T ss_dssp SSCCCCCSSSSCS
T ss_pred cCCcchhhhhccc
Confidence 3455679999875
No 177
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=26.25 E-value=27 Score=23.11 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=32.2
Q ss_pred CCcccccccccccC--ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNN--RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~--~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.-..|..|...+.. ......=|..||..|..+..... ..|..|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~-----~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD-----GLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC-----EECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc-----cChhhcCCccCc
Confidence 34578889888753 22223457789999976644322 389999988764
No 178
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.13 E-value=51 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
.-..|..|...+..... ..=|..||..|..+.. . ..|..|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f--~-----~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRF--G-----TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHH--S-----CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCc-ccCCeeeecccccccc--c-----ccccccccccCC
Confidence 44679999888875544 3457889999876532 3 688888877653
No 179
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=26.13 E-value=13 Score=21.96 Aligned_cols=47 Identities=21% Similarity=0.449 Sum_probs=26.9
Q ss_pred CCCcccccccccccCccc-cCc--cC-CcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVLNNRSY-TDT--CL-HEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~-~~~--Cg-H~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
.+...| ||.+.....++ -.. |. ..||..|+. +.. .....-.||.|+.
T Consensus 7 ~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~-~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTT-KPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSS-CCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--ccc-CCCCCEECcCccC
Confidence 344567 89875433222 124 65 589999985 221 1223568998864
No 180
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.60 E-value=18 Score=25.93 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=28.4
Q ss_pred cccccccccccC--ccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 46 SRCPICLLVLNN--RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 46 ~~C~ICl~~~~~--~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
..|..|...+.. ......=|..||..|..+....+ ..|..|.+.|.
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~-----~~C~~C~~~I~ 80 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-----GACSACGQSIP 80 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC-----EECTTTCCEEC
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccC-----CccccCCCccc
Confidence 568888777654 22212346778888876533311 27999988775
No 181
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=25.53 E-value=13 Score=22.12 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=26.8
Q ss_pred CCCcccccccccccCccc-cCc--cC-CcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVLNNRSY-TDT--CL-HEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~~~~~~-~~~--Cg-H~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
.+...| ||.+.....++ -.. |. ..||..|+.- .. .....-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl--~~-~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSL--TY-KPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTC--SS-CCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCc--Cc-CCCCCEECcCccc
Confidence 344567 99885433222 124 55 7899999852 11 1223578999864
No 182
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=25.22 E-value=61 Score=19.65 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=29.3
Q ss_pred CCCcccccccccc--c--CccccCccCCcccHhhHHHHHHhcCCCCCCcccCccc
Q psy6056 43 SPTSRCPICLLVL--N--NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93 (153)
Q Consensus 43 ~~~~~C~ICl~~~--~--~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~ 93 (153)
..+..|.||.+.- . .-+.-..|.-.|+..|+..-. .....=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS---CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc---CCCCCcCCccCcC
Confidence 4556799998653 1 223334788899999985311 1122357888864
No 183
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.64 E-value=50 Score=19.49 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=26.0
Q ss_pred CCcccccccccccC-ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNN-RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~-~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....|+.|-+.+.. ..++..-+..||..| -.|-.|...+..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C-------------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC-------------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT-------------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc-------------CeECCCCCCCCC
Confidence 34679999888752 222234566677776 467777776654
No 184
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.49 E-value=45 Score=20.05 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=26.8
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....|+.|-+.+.+..+ ..-+..||..| -.|..|...+..
T Consensus 14 ~~~~C~~C~~~I~~~~~-~a~~~~~H~~C-------------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 14 TLEKCATCSQPILDRIL-RAMGKAYHPGC-------------FTCVVCHRGLDG 53 (81)
T ss_dssp SCCBCTTTCCBCCSCCE-EETTEEECTTT-------------CBCSSSCCBCTT
T ss_pred CCCccccCCCeecceeE-EECCccccHHh-------------cCcccCCCccCC
Confidence 34568888887775533 45566777776 477788776653
No 185
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.54 E-value=67 Score=19.23 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=26.4
Q ss_pred Cccccccccccc-CccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLN-NRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~-~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...|..|-..+. +..++..=+..||..| ..|-.|...+..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C-------------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYEDRHFHEGC-------------FRCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCSSCCCBTTT-------------SBCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEeCCccccccC-------------CeecCCCCccCC
Confidence 346999988877 2333344567777777 477788776653
No 186
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.92 E-value=80 Score=18.27 Aligned_cols=10 Identities=20% Similarity=0.182 Sum_probs=4.9
Q ss_pred cccccccccc
Q psy6056 47 RCPICLLVLN 56 (153)
Q Consensus 47 ~C~ICl~~~~ 56 (153)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x61_A 7 GCGGCGEDVV 16 (72)
T ss_dssp CCSSSCSCCC
T ss_pred CCccCCCccC
Confidence 4555555443
No 187
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=22.24 E-value=20 Score=21.77 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=25.3
Q ss_pred CcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 45 TSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 45 ~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
...|+.|-+.+.....+..-+..||..| -.|-.|...+..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~C-------------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCC-------------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSS-------------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEeCCccccccc-------------CccCCCCCCCCC
Confidence 3568999887753323344566677666 467778776654
No 188
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.64 E-value=40 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=26.8
Q ss_pred CcccccccccccC---ccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 45 TSRCPICLLVLNN---RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 45 ~~~C~ICl~~~~~---~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
...|+.|-+.+.. ...+..-+..||..| ..|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C-------------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC-------------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG-------------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc-------------CChhhCCCcCC
Confidence 3569999888774 223345677788777 57888877765
No 189
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.25 E-value=1.3e+02 Score=18.42 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=24.9
Q ss_pred CCcccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 44 PTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 44 ~~~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
....|++|-..|.....+ ..............|+.|.+.|..
T Consensus 27 ~~h~C~~Cgk~F~~~~~L------------~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQ------------ERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp TTEECTTSCCEESSHHHH------------HHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCEECCCCCCCcCcHHHH------------hhhhhhccCCCccCCCCCCCEeCC
Confidence 345788887777655443 222232223335789999877754
No 190
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=20.79 E-value=13 Score=31.28 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=29.5
Q ss_pred CCCccccccccccc--C-ccccCccCCcccHhhHHHHHHhcCCCCCCcccCccccc
Q psy6056 43 SPTSRCPICLLVLN--N-RSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRL 95 (153)
Q Consensus 43 ~~~~~C~ICl~~~~--~-~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 95 (153)
.....| ||..... . -+.-..|.--||..|+.--...........||.|+...
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 344556 8987653 1 22333688889999984211100011347899997543
No 191
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.62 E-value=40 Score=20.31 Aligned_cols=37 Identities=14% Similarity=0.325 Sum_probs=26.3
Q ss_pred cccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 46 SRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 46 ~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
..|+.|-+.+....+ ..-+..||..| ..|-.|+..+.
T Consensus 16 ~~C~~C~~~I~~~~v-~a~~~~wH~~C-------------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVV-SALGKTYHPDC-------------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCE-EETTEEECTTT-------------SSCSSSCCCCC
T ss_pred CcCccccCEeccceE-EECCceeCccC-------------CccccCCCCCC
Confidence 469999888775433 45677777777 47778877765
No 192
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.28 E-value=36 Score=19.86 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=24.8
Q ss_pred cccccccccccCc-cccCccCCcccHhhHHHHHHhcCCCCCCcccCccccccc
Q psy6056 46 SRCPICLLVLNNR-SYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97 (153)
Q Consensus 46 ~~C~ICl~~~~~~-~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 97 (153)
..|+.|-+.+... .++..-+..||..| ..|-.|...+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C-------------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC-------------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT-------------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEECcCeecccC-------------CcccccCCccCC
Confidence 4688888877743 22234566677776 467777766543
No 193
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.05 E-value=67 Score=19.07 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=25.4
Q ss_pred cccccccccccCccccCccCCcccHhhHHHHHHhcCCCCCCcccCcccccc
Q psy6056 46 SRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96 (153)
Q Consensus 46 ~~C~ICl~~~~~~~~~~~CgH~FC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 96 (153)
..|+.|-+.+....+ ..-+..||..| ..|-.|+.++.
T Consensus 16 ~~C~~C~~~I~~~~v-~a~~~~~H~~C-------------F~C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQGGV-TYRDQPWHREC-------------LVCTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCSCCE-ESSSSEECTTT-------------CBCSSSCCBCT
T ss_pred CcCCCCCCEecCcEE-EECCchhhhhh-------------CCcccCCCcCC
Confidence 568888887765433 45567777777 47777877664
Done!