Your job contains 1 sequence.
>psy6056
MAESLFRQTQKRRLELPEIQQASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSY
TDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLLFASATECLQYINVYDIMILQVNT
STFKGLFGVNIGRIDRLHLFTFGHFQSRKTRVP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6056
(153 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-6401 - symbol:toporsa "topoisomerase... 142 1.3e-08 1
MGI|MGI:2146189 - symbol:Topors "topoisomerase I binding,... 143 1.3e-08 1
RGD|1305270 - symbol:Topors "topoisomerase I binding, arg... 143 1.3e-08 1
UNIPROTKB|F1PHI0 - symbol:TOPORS "Uncharacterized protein... 143 1.3e-08 1
UNIPROTKB|Q9NS56 - symbol:TOPORS "E3 ubiquitin-protein li... 143 1.3e-08 1
UNIPROTKB|F1SE69 - symbol:TOPORS "Uncharacterized protein... 143 1.3e-08 1
UNIPROTKB|F1N329 - symbol:TOPORS "Uncharacterized protein... 143 1.4e-08 1
TAIR|locus:2096264 - symbol:AT3G05250 species:3702 "Arabi... 131 2.9e-08 1
DICTYBASE|DDB_G0281183 - symbol:DDB_G0281183 "RING zinc f... 135 4.0e-08 1
FB|FBgn0034410 - symbol:Topors "Topoisomerase I-interacti... 127 6.7e-07 1
UNIPROTKB|F8W6K1 - symbol:SCAF11 "Protein SCAF11" species... 104 7.0e-06 1
UNIPROTKB|A8MUK0 - symbol:SCAF11 "Protein SCAF11" species... 93 0.00010 1
UNIPROTKB|A8MTP4 - symbol:SCAF11 "Protein SCAF11" species... 92 0.00013 1
UNIPROTKB|H0YAI5 - symbol:RNF4 "E3 ubiquitin-protein liga... 85 0.00080 1
>ZFIN|ZDB-GENE-030131-6401 [details] [associations]
symbol:toporsa "topoisomerase I binding,
arginine/serine-rich a" species:7955 "Danio rerio" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 ZFIN:ZDB-GENE-030131-6401 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 eggNOG:NOG244178 OrthoDB:EOG47H5PC EMBL:BC125819
IPI:IPI00512796 UniGene:Dr.22874 InParanoid:A0JMC0
ArrayExpress:A0JMC0 Uniprot:A0JMC0
Length = 846
Score = 142 (55.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 27/47 (57%), Positives = 32/47 (68%)
Query: 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCK 89
SP S+CPICL N SY D CLH+FCF CI +WS+ +E P LCK
Sbjct: 23 SPESKCPICLDHFKNISYLDVCLHKFCFCCIHEWSKNKAEC-P-LCK 67
>MGI|MGI:2146189 [details] [associations]
symbol:Topors "topoisomerase I binding,
arginine/serine-rich" species:10090 "Mus musculus" [GO:0000922
"spindle pole" evidence=ISO] [GO:0000930 "gamma-tubulin complex"
evidence=ISO] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003823
"antigen binding" evidence=ISO] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005814
"centriole" evidence=ISO] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006513 "protein
monoubiquitination" evidence=ISO] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=ISO] [GO:0016605 "PML body" evidence=ISO]
[GO:0016607 "nuclear speck" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=ISO] [GO:0019789 "SUMO
ligase activity" evidence=ISO] [GO:0032391 "photoreceptor
connecting cilium" evidence=ISO;IDA] [GO:0034504 "protein
localization to nucleus" evidence=ISO] [GO:0036064 "cilium basal
body" evidence=ISO;IDA] [GO:0042127 "regulation of cell
proliferation" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0044547 "DNA topoisomerase binding" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051443 "positive
regulation of ubiquitin-protein ligase activity" evidence=ISO]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=ISO] [GO:0070936 "protein K48-linked ubiquitination"
evidence=ISO] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
MGI:MGI:2146189 Prosite:PS00518 GO:GO:0045893 GO:GO:0008630
GO:GO:0043161 GO:GO:0005814 GO:GO:0003823 GO:GO:0046872
GO:GO:0003677 GO:GO:0016607 GO:GO:0016605 GO:GO:0008270
GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000922 GO:GO:0000930 GO:GO:0051457 InterPro:IPR017907
GO:GO:0070936 GO:GO:0032391 GO:GO:0051443 GO:GO:0034504
GO:GO:0016925 GO:GO:0006513 GO:GO:0036064 GO:GO:0019789 CTD:10210
eggNOG:NOG244178 GeneTree:ENSGT00530000064170 KO:K10631
HOVERGEN:HBG080410 OMA:DIINFRR OrthoDB:EOG47H5PC EMBL:AB072395
EMBL:AB104865 EMBL:BC037141 EMBL:BC040797 EMBL:AK044564
EMBL:AK134075 EMBL:AK140250 EMBL:AK143025 EMBL:AK153743
IPI:IPI00330897 RefSeq:NP_598858.2 UniGene:Mm.251548
ProteinModelPortal:Q80Z37 SMR:Q80Z37 MINT:MINT-1789728
STRING:Q80Z37 PhosphoSite:Q80Z37 PRIDE:Q80Z37
Ensembl:ENSMUST00000042575 GeneID:106021 KEGG:mmu:106021
InParanoid:Q80Z37 NextBio:358016 Bgee:Q80Z37 CleanEx:MM_TOPORS
Genevestigator:Q80Z37 GermOnline:ENSMUSG00000036822 Uniprot:Q80Z37
Length = 1033
Score = 143 (55.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 22 ASKKQKNDN--PSEDDSDGDR--PT--SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQ 75
A+K+ K DN P S + P SP S+CPICL +N SY D CLH+FCF C+++
Sbjct: 72 AAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQE 131
Query: 76 WSQISSESSPALCK 89
WS+ +E P LCK
Sbjct: 132 WSKNKAEC-P-LCK 143
>RGD|1305270 [details] [associations]
symbol:Topors "topoisomerase I binding, arginine/serine-rich, E3
ubiquitin protein ligase" species:10116 "Rattus norvegicus"
[GO:0000922 "spindle pole" evidence=IEA;ISO] [GO:0000930
"gamma-tubulin complex" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003823 "antigen binding" evidence=IEA;ISO]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005814 "centriole"
evidence=IEA;ISO] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISO] [GO:0006513 "protein
monoubiquitination" evidence=IEA;ISO] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA;ISO] [GO:0016605 "PML body"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IEA;ISO]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0016925 "protein
sumoylation" evidence=IEA;ISO] [GO:0019789 "SUMO ligase activity"
evidence=IEA;ISO] [GO:0032391 "photoreceptor connecting cilium"
evidence=IEA;ISO] [GO:0034504 "protein localization to nucleus"
evidence=ISO] [GO:0036064 "cilium basal body" evidence=IEA;ISO]
[GO:0042127 "regulation of cell proliferation" evidence=IEA;ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA;ISO] [GO:0044547 "DNA topoisomerase binding"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA;ISO] [GO:0051443
"positive regulation of ubiquitin-protein ligase activity"
evidence=IEA;ISO] [GO:0051457 "maintenance of protein location in
nucleus" evidence=IEA;ISO] [GO:0070936 "protein K48-linked
ubiquitination" evidence=IEA;ISO] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 RGD:1305270 Prosite:PS00518
GO:GO:0045893 GO:GO:0008630 GO:GO:0043161 GO:GO:0005814
GO:GO:0003823 GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0016605 GO:GO:0008270 GO:GO:0042127 GO:GO:0016853
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 EMBL:CH473962
GO:GO:0000922 GO:GO:0000930 GO:GO:0051457 InterPro:IPR017907
GO:GO:0070936 GO:GO:0032391 GO:GO:0051443 GO:GO:0016925
GO:GO:0006513 GO:GO:0036064 GO:GO:0019789 CTD:10210
GeneTree:ENSGT00530000064170 KO:K10631 OrthoDB:EOG47H5PC
IPI:IPI00950361 RefSeq:NP_001102128.1 UniGene:Rn.55605
Ensembl:ENSRNOT00000066081 GeneID:362501 KEGG:rno:362501
UCSC:RGD:1305270 NextBio:680139 Uniprot:D3ZZE0
Length = 1042
Score = 143 (55.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 22 ASKKQKNDN--PSEDDSDGDR--PT--SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQ 75
A+K+ K DN P S + P SP S+CPICL +N SY D CLH+FCF C+++
Sbjct: 72 AAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQE 131
Query: 76 WSQISSESSPALCK 89
WS+ +E P LCK
Sbjct: 132 WSKNKAEC-P-LCK 143
>UNIPROTKB|F1PHI0 [details] [associations]
symbol:TOPORS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0036064 "cilium basal body" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 GO:GO:0036064 CTD:10210
GeneTree:ENSGT00530000064170 KO:K10631 OMA:DIINFRR
EMBL:AAEX03007933 EMBL:AAEX03007934 RefSeq:XP_003639434.1
Ensembl:ENSCAFT00000002842 GeneID:481577 KEGG:cfa:481577
Uniprot:F1PHI0
Length = 1043
Score = 143 (55.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 22 ASKKQKNDN--PSEDDSDGDR--PT--SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQ 75
A+K+ K DN P S + P SP S+CPICL +N SY D CLH+FCF C+++
Sbjct: 71 AAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQE 130
Query: 76 WSQISSESSPALCK 89
WS+ +E P LCK
Sbjct: 131 WSKNKAEC-P-LCK 142
>UNIPROTKB|Q9NS56 [details] [associations]
symbol:TOPORS "E3 ubiquitin-protein ligase Topors"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042127 "regulation of cell proliferation"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0044547 "DNA topoisomerase binding" evidence=IPI]
[GO:0006351 "transcription, DNA-dependent" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003823 "antigen
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IMP;IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019789 "SUMO ligase activity" evidence=IMP;IDA]
[GO:0016925 "protein sumoylation" evidence=IMP;IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0034504 "protein localization to nucleus" evidence=IMP]
[GO:0051443 "positive regulation of ubiquitin-protein ligase
activity" evidence=IDA] [GO:0070936 "protein K48-linked
ubiquitination" evidence=IDA] [GO:0006513 "protein
monoubiquitination" evidence=IDA] [GO:0032391 "photoreceptor
connecting cilium" evidence=IDA] [GO:0005868 "cytoplasmic dynein
complex" evidence=TAS] [GO:0036064 "cilium basal body"
evidence=IDA] [GO:0030496 "midbody" evidence=TAS] [GO:0010842
"retina layer formation" evidence=ISS] [GO:0035845 "photoreceptor
cell outer segment organization" evidence=ISS] [GO:0046548 "retinal
rod cell development" evidence=ISS] [GO:0046549 "retinal cone cell
development" evidence=ISS] [GO:0043066 "negative regulation of
apoptotic process" evidence=ISS] [GO:0000922 "spindle pole"
evidence=IDA] [GO:0000930 "gamma-tubulin complex" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0045893
GO:GO:0043066 GO:GO:0008630 GO:GO:0043161 GO:GO:0005814
GO:GO:0003823 GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0016605 GO:GO:0008270 GO:GO:0006351 Orphanet:791
GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0035845
GO:GO:0010842 GO:GO:0004842 GO:GO:0030496 GO:GO:0000922
GO:GO:0046548 GO:GO:0000930 GO:GO:0051457 InterPro:IPR017907
GO:GO:0070936 GO:GO:0032391 GO:GO:0051443 GO:GO:0016925
GO:GO:0006513 GO:GO:0046549 GO:GO:0036064 GO:GO:0019789
EMBL:AL353671 CTD:10210 eggNOG:NOG244178 KO:K10631 ChiTaRS:TOPORS
EMBL:AF098300 EMBL:AB045732 EMBL:AB045733 EMBL:BC060884 EMBL:U82939
IPI:IPI00396077 IPI:IPI00643426 RefSeq:NP_001182551.1
RefSeq:NP_005793.2 UniGene:Hs.589962 ProteinModelPortal:Q9NS56
SMR:Q9NS56 IntAct:Q9NS56 MINT:MINT-94004 STRING:Q9NS56
PhosphoSite:Q9NS56 DMDM:74752935 PaxDb:Q9NS56 PRIDE:Q9NS56
Ensembl:ENST00000360538 Ensembl:ENST00000379858 GeneID:10210
KEGG:hsa:10210 UCSC:uc003zrb.3 UCSC:uc003zrc.3
GeneCards:GC09M032496 HGNC:HGNC:21653 MIM:609507 MIM:609923
neXtProt:NX_Q9NS56 PharmGKB:PA134979531 HOGENOM:HOG000231723
HOVERGEN:HBG080410 InParanoid:Q9NS56 OMA:DIINFRR OrthoDB:EOG47H5PC
PhylomeDB:Q9NS56 GenomeRNAi:10210 NextBio:38656 Bgee:Q9NS56
CleanEx:HS_TOPORS Genevestigator:Q9NS56 GermOnline:ENSG00000197579
Uniprot:Q9NS56
Length = 1045
Score = 143 (55.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 22 ASKKQKNDN--PSEDDSDGDR--PT--SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQ 75
A+K+ K DN P S + P SP S+CPICL +N SY D CLH+FCF C+++
Sbjct: 71 AAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQE 130
Query: 76 WSQISSESSPALCK 89
WS+ +E P LCK
Sbjct: 131 WSKNKAEC-P-LCK 142
>UNIPROTKB|F1SE69 [details] [associations]
symbol:TOPORS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032391 "photoreceptor connecting cilium" evidence=IDA]
[GO:0070936 "protein K48-linked ubiquitination" evidence=IEA]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IEA] [GO:0051443 "positive regulation of ubiquitin-protein
ligase activity" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0044547 "DNA
topoisomerase binding" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0042127 "regulation of cell proliferation" evidence=IEA]
[GO:0036064 "cilium basal body" evidence=IEA] [GO:0019789 "SUMO
ligase activity" evidence=IEA] [GO:0016925 "protein sumoylation"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016605
"PML body" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0006513
"protein monoubiquitination" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0003823 "antigen binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000930 "gamma-tubulin
complex" evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
PROSITE:PS50089 SMART:SM00184 Prosite:PS00518 GO:GO:0045893
GO:GO:0008630 GO:GO:0043161 GO:GO:0005814 GO:GO:0003823
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0016605
GO:GO:0008270 GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000922 GO:GO:0000930 GO:GO:0051457
InterPro:IPR017907 GO:GO:0070936 GO:GO:0032391 GO:GO:0051443
GO:GO:0016925 GO:GO:0006513 GO:GO:0036064 GO:GO:0019789
GeneTree:ENSGT00530000064170 OMA:DIINFRR EMBL:CU928691
Ensembl:ENSSSCT00000012046 Uniprot:F1SE69
Length = 1049
Score = 143 (55.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 22 ASKKQKNDN--PSEDDSDGDR--PT--SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQ 75
A+K+ K DN P S + P SP S+CPICL +N SY D CLH+FCF C+++
Sbjct: 74 AAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQE 133
Query: 76 WSQISSESSPALCK 89
WS+ +E P LCK
Sbjct: 134 WSKNKAEC-P-LCK 145
>UNIPROTKB|F1N329 [details] [associations]
symbol:TOPORS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0044547 "DNA topoisomerase
binding" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0042127 "regulation of
cell proliferation" evidence=IEA] [GO:0036064 "cilium basal body"
evidence=IEA] [GO:0032391 "photoreceptor connecting cilium"
evidence=IEA] [GO:0019789 "SUMO ligase activity" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0006513 "protein monoubiquitination"
evidence=IEA] [GO:0005814 "centriole" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0003823
"antigen binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000930 "gamma-tubulin complex" evidence=IEA]
[GO:0000922 "spindle pole" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0043015 "gamma-tubulin binding" evidence=IDA] [GO:0070936
"protein K48-linked ubiquitination" evidence=IEA] [GO:0051457
"maintenance of protein location in nucleus" evidence=IEA]
[GO:0051443 "positive regulation of ubiquitin-protein ligase
activity" evidence=IEA] InterPro:IPR001841 PROSITE:PS50089
SMART:SM00184 Prosite:PS00518 GO:GO:0005813 GO:GO:0045893
GO:GO:0008630 GO:GO:0043161 GO:GO:0005814 GO:GO:0003823
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0016605
GO:GO:0008270 GO:GO:0042127 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000922 GO:GO:0000930 GO:GO:0051457
InterPro:IPR017907 GO:GO:0070936 GO:GO:0032391 GO:GO:0051443
GO:GO:0043015 GO:GO:0016925 GO:GO:0006513 GO:GO:0036064
GO:GO:0019789 GeneTree:ENSGT00530000064170 OMA:DIINFRR
EMBL:DAAA02021989 IPI:IPI00713224 UniGene:Bt.56498
Ensembl:ENSBTAT00000048966 NextBio:20873711 ArrayExpress:F1N329
Uniprot:F1N329
Length = 1100
Score = 143 (55.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 34/74 (45%), Positives = 45/74 (60%)
Query: 22 ASKKQKNDN--PSEDDSDGDR--PT--SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQ 75
A+K+ K DN P S + P SP S+CPICL +N SY D CLH+FCF C+++
Sbjct: 134 AAKEFKMDNFSPKAGTSKLQQTVPADASPDSKCPICLDRFDNVSYLDRCLHKFCFRCVQE 193
Query: 76 WSQISSESSPALCK 89
WS+ +E P LCK
Sbjct: 194 WSKNKAEC-P-LCK 205
>TAIR|locus:2096264 [details] [associations]
symbol:AT3G05250 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008270 "zinc ion
binding" evidence=IEA;ISS] [GO:0007165 "signal transduction"
evidence=RCA] [GO:0009755 "hormone-mediated signaling pathway"
evidence=RCA] InterPro:IPR001841 InterPro:IPR018957 PROSITE:PS50089
SMART:SM00184 Pfam:PF00097 Prosite:PS00518 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907 HSSP:P28990
EMBL:BT008778 EMBL:DQ086839 EMBL:AK117770 IPI:IPI00545519
RefSeq:NP_187176.2 UniGene:At.40705 ProteinModelPortal:Q8GYA2
SMR:Q8GYA2 IntAct:Q8GYA2 PRIDE:Q8GYA2 EnsemblPlants:AT3G05250.1
GeneID:819689 KEGG:ath:AT3G05250 TAIR:At3g05250 eggNOG:NOG245952
HOGENOM:HOG000083472 InParanoid:Q8GYA2 OMA:PLCKTEN PhylomeDB:Q8GYA2
ProtClustDB:CLSN2690722 Genevestigator:Q8GYA2 Uniprot:Q8GYA2
Length = 278
Score = 131 (51.2 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 40/94 (42%), Positives = 48/94 (51%)
Query: 22 ASKKQKNDNPSEDD-SDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQIS 80
A+K+ + S DD SD D P CPICL SY DTC H+FCF CIKQW ++
Sbjct: 2 AAKEIAGGSGSIDDGSDFD-P------CPICLGQFLRESYLDTCFHKFCFNCIKQWIKVV 54
Query: 81 SESSPALCKMSKQRLLLFASA--TECLQYINVYD 112
S K SKQR + TE L I+ YD
Sbjct: 55 SS------KASKQRSSVTCPLCKTENLSIIHNYD 82
>DICTYBASE|DDB_G0281183 [details] [associations]
symbol:DDB_G0281183 "RING zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR002483
Pfam:PF01480 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
dictyBase:DDB_G0281183 Prosite:PS00518 GO:GO:0046872
EMBL:AAFI02000040 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 eggNOG:NOG244178
RefSeq:XP_640869.1 ProteinModelPortal:Q54UA7
EnsemblProtists:DDB0233761 GeneID:8622925 KEGG:ddi:DDB_G0281183
InParanoid:Q54UA7 OMA:PWIKREL Uniprot:Q54UA7
Length = 548
Score = 135 (52.6 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 18 EIQQASKKQKNDNPSEDDSDGDRPTS---PTSRCPICLLVLNNRSYTDTCLHEFCFLCIK 74
E + + + + + DD + D+P S C ICL N ++ D C H+FCF+CI
Sbjct: 67 EEENKENEIEEEEYNNDDEEVDKPLKLICEDSTCSICLSPFENLTFLDICFHQFCFVCIL 126
Query: 75 QWSQISSESSPALCKMSKQRLLL-FASATECLQYI 108
QWS+++ + P LCK L+ S T+ ++I
Sbjct: 127 QWSELN-QRCP-LCKSEYHSLIYQVKSNTDYQRFI 159
>FB|FBgn0034410 [details] [associations]
symbol:Topors "Topoisomerase I-interacting protein"
species:7227 "Drosophila melanogaster" [GO:0044547 "DNA
topoisomerase binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IDA] [GO:0005652 "nuclear lamina" evidence=IDA]
[GO:0005700 "polytene chromosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0007095 "mitotic G2 DNA damage
checkpoint" evidence=IGI] InterPro:IPR001841 InterPro:IPR018957
PROSITE:PS50089 SMART:SM00184 Pfam:PF00097 Prosite:PS00518
EMBL:AE013599 GO:GO:0007095 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0005700 GO:GO:0000209
InterPro:IPR017907 GO:GO:0042787 GO:GO:0006997 GO:GO:0005521
GO:GO:0005652 EMBL:AY122186 RefSeq:NP_611388.1 UniGene:Dm.10778
ProteinModelPortal:Q9V8P9 SMR:Q9V8P9 IntAct:Q9V8P9 STRING:Q9V8P9
PaxDb:Q9V8P9 PRIDE:Q9V8P9 EnsemblMetazoa:FBtr0086570
EnsemblMetazoa:FBtr0331977 GeneID:37188 KEGG:dme:Dmel_CG15104
CTD:10210 FlyBase:FBgn0034410 eggNOG:NOG244178
GeneTree:ENSGT00530000064170 InParanoid:Q9V8P9 KO:K10631
OMA:FIHELFN OrthoDB:EOG42V6ZJ PhylomeDB:Q9V8P9 ChiTaRS:TOPORS
GenomeRNAi:37188 NextBio:802385 Bgee:Q9V8P9 GermOnline:CG15104
Uniprot:Q9V8P9
Length = 1038
Score = 127 (49.8 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 32 SEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCK 89
+E++ +R SP C ICL + +TD+C+H+FCF C+ +WS+I E P LCK
Sbjct: 87 AEENGTVER-NSPPPNCAICLSRCRRKCFTDSCMHQFCFKCLCEWSKIKPEC-P-LCK 141
>UNIPROTKB|F8W6K1 [details] [associations]
symbol:SCAF11 "Protein SCAF11" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 SMART:SM00184 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 EMBL:AC000015 HGNC:HGNC:10784 ChiTaRS:SCAF11
EMBL:AC084878 IPI:IPI00852713 ProteinModelPortal:F8W6K1 SMR:F8W6K1
Ensembl:ENST00000266589 ArrayExpress:F8W6K1 Bgee:F8W6K1
Uniprot:F8W6K1
Length = 118
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 3 ESLFRQTQKRRLELPEIQQASKKQKNDNPSEDDSDGDRPT----SPTSRCPICLLVLNNR 58
E+LF++ K++ + + KK + D E++ D T S RCPICL L +
Sbjct: 10 ETLFQREMKKKT-VCTLNMGDKKYE-DMEGEENGDNTISTGLLYSEADRCPICLNCLLEK 67
Query: 59 S--YTDTCLHEFCFLCIKQWSQ 78
+ ++C H FC CI +W++
Sbjct: 68 EVGFPESCNHVFCMTCILKWAE 89
>UNIPROTKB|A8MUK0 [details] [associations]
symbol:SCAF11 "Protein SCAF11" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 Prosite:PS00518 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
EMBL:AC000015 HGNC:HGNC:10784 ChiTaRS:SCAF11 EMBL:AC084878
HOGENOM:HOG000015273 HOVERGEN:HBG100010 IPI:IPI00794542
ProteinModelPortal:A8MUK0 SMR:A8MUK0 STRING:A8MUK0 PRIDE:A8MUK0
Ensembl:ENST00000395454 UCSC:uc001roz.3 ArrayExpress:A8MUK0
Bgee:A8MUK0 Uniprot:A8MUK0
Length = 77
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 25 KQKNDNPSEDDSDGDRPT----SPTSRCPICLLVLNNRS--YTDTCLHEFCFLCIKQWSQ 78
K+ D E++ D T S RCPICL L + + ++C H FC CI +W++
Sbjct: 14 KKYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWAE 73
Query: 79 IS 80
S
Sbjct: 74 RS 75
>UNIPROTKB|A8MTP4 [details] [associations]
symbol:SCAF11 "Protein SCAF11" species:9606 "Homo sapiens"
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
Pfam:PF13639 PROSITE:PS50089 Prosite:PS00518 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 InterPro:IPR017907
EMBL:AC000015 HGNC:HGNC:10784 ChiTaRS:SCAF11 EMBL:AC084878
IPI:IPI00853340 ProteinModelPortal:A8MTP4 SMR:A8MTP4 STRING:A8MTP4
Ensembl:ENST00000395453 HOGENOM:HOG000015273 HOVERGEN:HBG100010
ArrayExpress:A8MTP4 Bgee:A8MTP4 Uniprot:A8MTP4
Length = 77
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 25 KQKNDNPSEDDSDGDRPT----SPTSRCPICLLVLNNRS--YTDTCLHEFCFLCIKQWSQ 78
K+ D E++ D T S RCPICL L + + ++C H FC CI +W++
Sbjct: 14 KKYEDMEGEENGDNTISTGLLYSEADRCPICLNCLLEKEVGFPESCNHVFCMTCILKWAE 73
>UNIPROTKB|H0YAI5 [details] [associations]
symbol:RNF4 "E3 ubiquitin-protein ligase RNF4" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 Pfam:PF13639 PROSITE:PS50089 SMART:SM00184
Prosite:PS00518 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 EMBL:AL110117 EMBL:AL645924
EMBL:BX322586 EMBL:CR450722 EMBL:CR545473 HGNC:HGNC:10067
ChiTaRS:RNF4 Ensembl:ENST00000508235 Uniprot:H0YAI5
Length = 106
Score = 85 (35.0 bits), Expect = 0.00081, P = 0.00080
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 30 NPSEDDSDGDRPTSPTSRCPICL-----LVLNNRSYTDT-CLHEFCFLCIKQWSQISSES 83
N ++ + G RP+ S CPIC+ +V N R T C H FC C++ S ++ +
Sbjct: 31 NARDEGATGLRPSGTVS-CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-SLKNANT 88
Query: 84 SPALC--KMSKQRLLL 97
P C K++ +RLLL
Sbjct: 89 CPT-CRKKINHKRLLL 103
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.134 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 153 153 0.00081 105 3 11 22 0.43 31
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 591 (63 KB)
Total size of DFA: 154 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.97u 0.13s 19.10t Elapsed: 00:00:01
Total cpu time: 18.97u 0.13s 19.10t Elapsed: 00:00:01
Start: Thu Aug 15 17:44:32 2013 End: Thu Aug 15 17:44:33 2013