RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6056
(153 letters)
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 52.0 bits (125), Expect = 3e-10
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSE 82
+ RCPICL +N S CLH FC++CI +W + +
Sbjct: 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT 42
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 44.1 bits (104), Expect = 8e-07
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 28 NDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPAL 87
+ + S D + RC IC+ L + C CF CI++W P
Sbjct: 5 HHHHSHMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCP-H 63
Query: 88 CKMS 91
C+
Sbjct: 64 CRAP 67
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 39.9 bits (93), Expect = 1e-05
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 32 SEDDSDGDRPTSPTSRCPICL------LVLNNRSYTDTCLHEFCFLCIKQW 76
S S S T CPIC+ + + C H FC C++
Sbjct: 2 SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 52
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 39.4 bits (92), Expect = 3e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
C IC L + + CLH FC CI +
Sbjct: 17 LCSICKGYLIDATTITECLHTFCKSCIVRH 46
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 39.1 bits (91), Expect = 3e-05
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 36 SDGDRPTSPTSRCPICL------LVLNNRSYTDTCLHEFCFLCIKQWSQISSE 82
+ G RP S T CPIC+ + + C H FC C++ + ++
Sbjct: 2 TTGLRP-SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT 53
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 38.7 bits (90), Expect = 5e-05
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 36 SDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSE 82
S P+ C ICL + C H FC+LC+K S +
Sbjct: 6 SGNTAPSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWLGKR 51
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 39.0 bits (91), Expect = 6e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
RC IC N C H +C LCI+++
Sbjct: 24 RCGICFEYFNIAMIIPQCSHNYCSLCIRKF 53
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 37.8 bits (88), Expect = 9e-05
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 32 SEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
S S D P C IC ++ + C + +C CI+
Sbjct: 2 SSGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTA 46
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 37.9 bits (88), Expect = 1e-04
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 32 SEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSE 82
S S G RC IC N T C H FC C + + +
Sbjct: 2 SSGSSGGSEEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRATPR 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 38.0 bits (88), Expect = 2e-04
Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 33 EDDSDGDRPTSPTS--------RCPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
E D G S + RC C +L C H FC C+
Sbjct: 2 EPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDC 53
>2ecy_A TNF receptor-associated factor 3; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 36.7 bits (85), Expect = 2e-04
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCK 89
C C LVL + C H FC C+ SS C+
Sbjct: 18 CEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCT-ACQ 57
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMS 91
C IC ++ + C + +C CI+ S E + C +
Sbjct: 15 LCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 59
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 37.3 bits (86), Expect = 5e-04
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 3 ESLFRQTQKRRLELPEIQQASKKQKNDNPSEDDSDGDRPTSPTSR----------CPICL 52
+L + + + + I QA K+ E + + S C IC
Sbjct: 12 WALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICS 71
Query: 53 LVLNNRSYTDTCLHEFCFLCIKQWSQISSE 82
+ C H FC CI +W + E
Sbjct: 72 EYFIEAVTLN-CAHSFCSYCINEWMKRKIE 100
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 37.8 bits (87), Expect = 6e-04
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 5 LFRQTQKRRLELPEIQQASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTC 64
LF + + +L + + + + E S C IC + C
Sbjct: 292 LFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIE-PC 350
Query: 65 LHEFCFLCIKQWSQISSESSPALCKMS 91
H C C+ W + + P C+
Sbjct: 351 GHLMCTSCLTSWQESEGQGCP-FCRCE 376
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 34.7 bits (80), Expect = 0.001
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 48 CPICLLVLNNRSYTDT------CLHEFCFLCIKQWSQISSE 82
CPIC+ + C H FC C++ + ++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_C 2h0d_B
Length = 165
Score = 36.5 bits (84), Expect = 0.001
Identities = 20/69 (28%), Positives = 25/69 (36%)
Query: 8 QTQKRRLELPEIQQASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHE 67
Q + EL + Q+ + R CPICL +L N T CLH
Sbjct: 17 QPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHR 76
Query: 68 FCFLCIKQW 76
FC CI
Sbjct: 77 FCADCIITA 85
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 35.2 bits (81), Expect = 0.002
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPA 86
CPICL+ L + C H FC CI + + + P
Sbjct: 21 CPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPV 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 35.5 bits (81), Expect = 0.002
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPA 86
C C VL + C H +C C+ ++ A
Sbjct: 33 LCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAA 71
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 34.8 bits (80), Expect = 0.002
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
C +C + + CLH FC CI ++
Sbjct: 17 MCVLCGGYFIDATTIIECLHSFCKTCIVRY 46
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 34.8 bits (79), Expect = 0.003
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 27/89 (30%)
Query: 17 PEIQQASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDT------------- 63
E +Q +K + + D C IC+ L S
Sbjct: 7 GEPEQVIRKYTEELKVAPEED----------CIICMEKLAVASGYSDMTDSKALGPMVVG 56
Query: 64 ----CLHEFCFLCIKQWSQISSESSPALC 88
C H F LC+ ++ C
Sbjct: 57 RLTKCSHAFHLLCLLAMYCNGNKDGSLQC 85
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 33.7 bits (77), Expect = 0.003
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESS 84
C IC +L +TC C+ ++ Q ++E
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPR 54
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 35.7 bits (81), Expect = 0.003
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 8 QTQKRRLELPEIQQASKKQKNDNPSEDDSDGDRPTSPTS--RCPICLLVLNNRSYTDTCL 65
T K LP I D + D D + CPI + C
Sbjct: 142 DTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCN 201
Query: 66 HEFCFLCIKQW 76
H F I+ +
Sbjct: 202 HVFDRDGIQNY 212
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.20A {Homo
sapiens}
Length = 170
Score = 35.1 bits (80), Expect = 0.004
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSP 85
CPICL+ L + C H FC CI + + + P
Sbjct: 21 CPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCP 57
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 34.4 bits (78), Expect = 0.005
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 43 SPTSRCPICLLVLNNRSYTDT------CLHEFCFLCIKQWSQISSESSPALCKMSKQR 94
S T CPIC+ + C H FC C++ + ++ K++ +R
Sbjct: 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 33.3 bits (75), Expect = 0.007
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRL 95
C C L + C H FC+ C + + P C QR+
Sbjct: 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCP-GCSDPVQRI 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 33.0 bits (75), Expect = 0.011
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
C C ++ R T C H C C+ +
Sbjct: 55 CICCQELVF-RPITTVCQHNVCKDCLDRS 82
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.44.1.3
Length = 93
Score = 32.5 bits (73), Expect = 0.015
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 32 SEDDSDGDRPTSPTSRCPICLLVLNNRSYT---DTCLHEFCFLCIKQWSQISSESSPALC 88
S S S C IC L + + H+FCF C ++ + + C
Sbjct: 2 SSGSSGSPMANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYC 61
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 32.6 bits (74), Expect = 0.019
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISS 81
C IC +L + +C H FC +CI + ++
Sbjct: 25 SCQICEHILAD-PVETSCKHLFCRICILRCLKVMG 58
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 33.4 bits (75), Expect = 0.021
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 1 MAESLFRQTQKRRLELPEIQQASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSY 60
+ L ++ + + + P+ +A K+K + + + CP+ + L
Sbjct: 172 TSAMLLQRLKMKGIRNPDHSRALIKEKLTADPDSEIATTS-LRVSLMCPLGKMRLTIPCR 230
Query: 61 TDTCLHEFCF 70
TC H CF
Sbjct: 231 AVTCTHLQCF 240
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 31.8 bits (72), Expect = 0.021
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 43 SPTSRCPICL--LVLNNRSYTDTCLHEFCFLCIKQW 76
S +S C +CL + + C FC LC+KQ+
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY 38
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 31.2 bits (71), Expect = 0.025
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 12/39 (30%)
Query: 48 CPICL-----LVLNNRSYTDTCLHEFCFLCIKQWSQISS 81
C IC+ L+L C H FC CI +WS
Sbjct: 18 CCICMDGRADLILP-------CAHSFCQKCIDKWSDRHR 49
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.059
Identities = 20/122 (16%), Positives = 33/122 (27%), Gaps = 22/122 (18%)
Query: 2 AESLFRQTQK--RRLELPEIQQASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRS 59
E++ QK +++ ++ R + CLLVL N
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-V 253
Query: 60 YTDTCLHEF---C-------------FLCIKQWSQISSE-SSPALCKMSKQRLLLFASAT 102
+ F C FL + IS + S L + L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYL 311
Query: 103 EC 104
+C
Sbjct: 312 DC 313
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 32.1 bits (72), Expect = 0.062
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 15/90 (16%)
Query: 1 MAESLFRQTQKRRLELPEIQQASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLV-LNNRS 59
+E + R +L ED+ + C IC L+
Sbjct: 272 DSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELR--------CNICFAYRLDGGE 323
Query: 60 YTD------TCLHEFCFLCIKQWSQISSES 83
C+ + +C+++W + +
Sbjct: 324 VPLVSCDNAKCVLKCHAVCLEEWFKTLMDG 353
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 30.7 bits (69), Expect = 0.097
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 9 TQKRRLELPEIQQASKKQKNDNPSED--DSDGDRPTSPTS-----RCPICLLVLNNRSYT 61
+ +L + + +N ++ + P C C ++ T
Sbjct: 35 IEAFQLTPQQQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTT 94
Query: 62 DTCLHEFCFLCIKQW 76
+ C H C C+++
Sbjct: 95 E-CFHNVCKDCLQRS 108
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 29.3 bits (66), Expect = 0.11
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
CPICL +L D C H FC CI Q
Sbjct: 23 CPICLDILQKPVTID-CGHNFCLKCITQI 50
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 30.9 bits (69), Expect = 0.11
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCK 89
C IC +L +TC C+ ++ Q ++E C
Sbjct: 182 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 224
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 29.7 bits (67), Expect = 0.13
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQ-WSQISSESSPALC 88
CPICL +L + C H FC CI + + C
Sbjct: 22 CPICLELLKE-PVSADCNHSFCRACITLNYESNRNTDGKGNC 62
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 28.8 bits (65), Expect = 0.13
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
C +CL L + C H FC CI +W
Sbjct: 18 CSVCLEYLKEPVIIE-CGHNFCKACITRW 45
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 28.9 bits (65), Expect = 0.14
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQ 75
RC C CLH C C++
Sbjct: 8 RCQQCQAEAKCPKLLP-CLHTLCSGCLEA 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 29.9 bits (67), Expect = 0.14
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLLFASATECL 105
C IC+ +L T C H C C + + +S P C+ + + L
Sbjct: 18 CGICMEILV-EPVTLPCNHTLCKPCFQSTVEKASLCCP-FCRRRVSSWTRYHTRRNSL 73
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 29.0 bits (65), Expect = 0.15
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 32 SEDDSDGDRPTSPTSRCPICLLVLNNRSYTD-------TCLHEFCFLCIKQWSQISSESS 84
S S + + C +CL + C H F C+ +W ++
Sbjct: 2 SSGSSGKVKELNLHELCAVCL-----EDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VC 55
Query: 85 PALCKMS 91
P LC M
Sbjct: 56 P-LCNMP 61
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 29.7 bits (67), Expect = 0.19
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQ-WSQISSESSPALCKMSKQR 94
CPICL ++ + C H FC C+ + +Q S LCK +
Sbjct: 24 CPICLELIKE-PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 28.8 bits (65), Expect = 0.21
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 10/46 (21%)
Query: 48 CPICLLVLNNRSYTD----TCLHEFCFLCIKQ-WSQISSESSPALC 88
CPICL + T C H FC C+ + + + C
Sbjct: 22 CPICLEL-----LTQPLSLDCGHSFCQACLTANHKKSMLDKGESSC 62
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.21
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 2 AESL--FRQTQKRRLELPEIQQASKKQK 27
ES+ +R+ Q++RL+ E+ ASK +
Sbjct: 84 PESIRKWREEQRKRLQ--ELDAASKVME 109
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 28.9 bits (65), Expect = 0.23
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 48 CPICLLVLNNRSYTD---TCLHEFCFLCIKQWSQ 78
CPIC+ C H C C+++
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLA 51
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 27.9 bits (62), Expect = 0.52
Identities = 9/44 (20%), Positives = 12/44 (27%), Gaps = 5/44 (11%)
Query: 48 CPICLLVLNNRSYTDT---CLHEFCFLCIKQWSQISSESSPALC 88
C C C H F C+ W + + LC
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLW--VKQNNRCPLC 70
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain,
tripartite motif protein 34, interferon- responsive
finger protein 1; NMR {Homo sapiens}
Length = 79
Score = 27.6 bits (62), Expect = 0.64
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 48 CPICLLVLNNRSYTD----TCLHEFCFLCIKQWSQISSESSPALC 88
CPICL + T+ C H C CI ++ + S
Sbjct: 15 CPICLEL-----LTEPLSLDCGHSLCRACITVSNKEAVTSMGGKS 54
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 26.9 bits (60), Expect = 0.79
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
CPICL +L D C H FC CI Q
Sbjct: 23 CPICLDILQKPVTID-CGHNFCLKCITQI 50
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 26.5 bits (59), Expect = 0.80
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 43 SPTSRCPICL--LVLNNRSYTDT-CLHEFCFLCIKQW 76
S +S CPICL + + C H C ++
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEM 39
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 0.88
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 21/61 (34%)
Query: 17 PEIQQASKKQKNDN-----PS---------EDDSDGDRPTSPTSRCPICLLVLNNRSYTD 62
++A ++ N N P E S+GD C +C LVL+++ D
Sbjct: 6 SIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDV------VCALCGLVLSDK-LVD 58
Query: 63 T 63
T
Sbjct: 59 T 59
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 28.4 bits (62), Expect = 1.1
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 20 QQASKKQKNDNPSEDDSDGDRPTSPTS-RCPICLLVLNNRSYTDTCLHEFCF 70
Q K +++ ++ S +CPI + S + C H CF
Sbjct: 223 QATLLYLKKTLREDEEMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCF 274
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 26.6 bits (58), Expect = 1.2
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 30 NPSEDDSDGDRPTSPTSRCPICLLVLNNRSYT---DTCLHEFCFLCIKQWSQISSESSPA 86
+ S D + CP+C+ L TC ++ C C + + PA
Sbjct: 2 SRSPDAKEDP------VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPA 55
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP:
g.44.1.1
Length = 65
Score = 26.5 bits (58), Expect = 1.2
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 47 RCPICLLVL----NNRSYTDTCLHEFCFLCIKQWSQISSESSP 85
CP C + + + C H C C+ + + P
Sbjct: 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCP 47
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase;
NMR {Homo sapiens} SCOP: g.44.1.1
Length = 60
Score = 26.2 bits (58), Expect = 1.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 64 CLHEFCFLCIKQWSQ 78
C EFC++C+ W
Sbjct: 32 CKAEFCWVCLGPWEP 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.5
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 12/24 (50%)
Query: 74 KQWSQI----SS------ESSPAL 87
KQ + +S +S+PAL
Sbjct: 19 KQ--ALKKLQASLKLYADDSAPAL 40
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 26.1 bits (58), Expect = 2.5
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 22 ASKKQKNDNPSEDDSDGDRPTSPTSRCPICL--LVLNNRSYTDTCLHEFCFLCIKQW 76
ASK+ + P ++ CPIC V + + C H F C+ W
Sbjct: 17 ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein,
rieske iron protein, cytochrome B, complex III; HET: BHG
HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP:
f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C*
1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C*
1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C*
3l70_C* 2bcc_C* ...
Length = 379
Score = 26.9 bits (60), Expect = 2.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 90 MSKQRLLLFASATECLQYINVYDIMIL 116
SKQR ++F ++CL + V D++ L
Sbjct: 309 TSKQRSMMFRPLSQCLFWALVADLLTL 335
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 78
Score = 25.1 bits (55), Expect = 5.0
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 48 CPICL--LVLNNRSYTDTCLHEFCFLCIKQW 76
CP+C L C H F CI W
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPW 48
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Length = 106
Score = 25.4 bits (55), Expect = 5.3
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 29 DNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEF------CFLCIKQWSQIS 80
N S + DG+ + C C V+ YT + + EF C LC K IS
Sbjct: 41 TNKSLKEEDGEEIVTYDHLCKNCHHVIARHEYTFSIMDEFQEYTMLCLLCGKAEDTIS 98
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 24.9 bits (54), Expect = 7.6
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQW 76
CPI + C H + I +
Sbjct: 9 TCPITKEEMKKPVKNKVCGHTYEEDAIVRM 38
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 25.5 bits (55), Expect = 9.4
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 5/47 (10%)
Query: 35 DSDGDRPTSPTSRCPIC-----LLVLNNRSYTDTCLHEFCFLCIKQW 76
+ T + CP C ++ + C LC +W
Sbjct: 172 EEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 218
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.406
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,062,994
Number of extensions: 98787
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 69
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.9 bits)