RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6056
(153 letters)
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 39.2 bits (91), Expect = 1e-05
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 43 SPTSRCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSE 82
+ RCPICL +N S CLH FC++CI +W + +
Sbjct: 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT 42
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 34.8 bits (79), Expect = 9e-04
Identities = 9/48 (18%), Positives = 13/48 (27%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQR 94
RC C +L C H FC C+ + +
Sbjct: 24 RCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLK 71
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.1 bits (78), Expect = 0.001
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCK 89
C IC +L + T C H FC +CI + ++ P C+
Sbjct: 26 CQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCP-SCR 65
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 33.3 bits (76), Expect = 0.001
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 48 CPICLLVLNNRSYT---DTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLLL 97
C +CL L + C H F C+ W S C + + +++
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST-----CPLCRLTVVV 55
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 31.4 bits (71), Expect = 0.005
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQ 78
RC C CLH C C++
Sbjct: 8 RCQQCQAEAKCPKLL-PCLHTLCSGCLEASGM 38
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 31.4 bits (70), Expect = 0.007
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 48 CPICLLVLNNRSYTD----TCLHEFCFLCIKQWSQISSESSPALCK 89
C IC L N + L C+ W IS ++ +C
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 31.4 bits (70), Expect = 0.009
Identities = 4/39 (10%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSP 85
I ++ + I++ Q +P
Sbjct: 9 CGKISFELMREP-CITPSGITYDRKDIEEHLQRVGHFNP 46
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 31.1 bits (70), Expect = 0.013
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCK 89
C IC + + C H C C+ W + + P C+
Sbjct: 26 CKICAENDKD-VKIEPCGHLMCTSCLTSWQESEGQGCP-FCR 65
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 30.4 bits (68), Expect = 0.018
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRLL 96
RCPI L ++ + + I++W ++ P + L
Sbjct: 10 RCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 30.8 bits (69), Expect = 0.025
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQRL 95
CPICL ++ + C H FC C+ + ++ + P+ C + K +
Sbjct: 23 ECPICLELIKE-PVSTKCDHIFCKFCMLKL--LNQKKGPSQCPLCKNDI 68
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 30.1 bits (67), Expect = 0.032
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 42 TSPTSRCPICL--LVLNNRSYTDTCLHEFCFLCIKQWSQISSESS 84
+S +S C +CL + + C FC LC+KQ+ ++ +
Sbjct: 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEG 46
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 28.9 bits (64), Expect = 0.051
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 48 CPICLLVLNNRS---YTDTCLHEFCFLCIKQWSQISSESSPALCKMS 91
CP+C+ L + TC ++ C C + + C+
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN-GLCPACRKP 48
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 28.2 bits (62), Expect = 0.088
Identities = 5/31 (16%), Positives = 10/31 (32%)
Query: 48 CPICLLVLNNRSYTDTCLHEFCFLCIKQWSQ 78
C I V + F ++Q+ +
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQYVK 33
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 27.4 bits (60), Expect = 0.22
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 46 SRCPICLLVLNN----RSYTDTCLHEFCFLCIKQWSQISSESSP 85
CP C + + C H C C+ + + P
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCP 47
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 27.7 bits (60), Expect = 0.35
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 64 CLHEFCFLCIKQWSQISSESSPALCKMSK 92
C H F LC+ ++ C K
Sbjct: 61 CSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 26.6 bits (58), Expect = 0.63
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 17/51 (33%)
Query: 48 CPICLLVLNNRSYTD-----------------TCLHEFCFLCIKQWSQISS 81
C IC + + C H F F CI +W +
Sbjct: 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 74
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 26.0 bits (57), Expect = 1.8
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 5/47 (10%)
Query: 35 DSDGDRPTSPTSRCPIC-----LLVLNNRSYTDTCLHEFCFLCIKQW 76
+ T + CP C ++ + C LC +W
Sbjct: 154 EEGAVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW 200
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 24.6 bits (53), Expect = 2.1
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 5/39 (12%)
Query: 45 TSRCPICLLVL-----NNRSYTDTCLHEFCFLCIKQWSQ 78
C C + C FC C +QW +
Sbjct: 18 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEE 56
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 24.5 bits (53), Expect = 2.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 64 CLHEFCFLCIKQWSQ 78
C EFC++C+ W
Sbjct: 32 CKAEFCWVCLGPWEP 46
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 24.4 bits (52), Expect = 4.2
Identities = 3/47 (6%), Positives = 10/47 (21%)
Query: 47 RCPICLLVLNNRSYTDTCLHEFCFLCIKQWSQISSESSPALCKMSKQ 93
PI ++ + + I + ++
Sbjct: 24 LDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 23.7 bits (51), Expect = 4.5
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 22 ASKKQKNDNPSEDDSDGDRPTSPTSRCPICLLVLNNRSYTDTCLHEFC 69
+S + D+ + + D P S +RC C + + C FC
Sbjct: 5 SSGTRGGDSAA---APLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFC 49
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 74
Score = 23.3 bits (50), Expect = 5.7
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 31 PSEDDSDGDRPTSPTS---RCPICLLVLNNRSYTDTCLHEFC 69
PS S+ P P RC +C + + C + FC
Sbjct: 8 PSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFC 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.406
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 511,805
Number of extensions: 20330
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 23
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.2 bits)