BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6058
         (235 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1G2X|A Chain A, Sequence Induced Trimerization Of Krait Pla2: Crystal
          Structure Of The Trimeric Form Of Krait Pla2
 pdb|1G2X|B Chain B, Sequence Induced Trimerization Of Krait Pla2: Crystal
          Structure Of The Trimeric Form Of Krait Pla2
 pdb|1G2X|C Chain C, Sequence Induced Trimerization Of Krait Pla2: Crystal
          Structure Of The Trimeric Form Of Krait Pla2
 pdb|2OSN|A Chain A, An Alternate Description Of A Crystal Structure Of
          Phospholipase A2 From Bungarus Caeruleus
          Length = 118

 Score = 27.3 bits (59), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 20/49 (40%)

Query: 49 YITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVY 97
          YI +GC  G G S   V  +    Y  D     A S+  C   I T+ Y
Sbjct: 20 YINYGCYCGKGGSGTPVDKLDRCCYTHDHCYNQADSIPGCNPNIKTYSY 68


>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
           Bound With Adp
 pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
           Bound With Adp
 pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
           Bound With Adp
          Length = 354

 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 26/61 (42%)

Query: 172 LVAVEIKEIRRVLMDGGNIESLLFTEEEEMTKRGHNSVLNLPTFFLYDDVSGQHREEFGK 231
           L     K+I  ++ +G    ++  T   E + R H       T  LYD  SG   E+ GK
Sbjct: 186 LAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGK 245

Query: 232 L 232
           L
Sbjct: 246 L 246


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,915,853
Number of Sequences: 62578
Number of extensions: 262879
Number of successful extensions: 618
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 3
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)