Query psy6058
Match_columns 235
No_of_seqs 207 out of 2059
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 16:35:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10642 proline/glycine betai 99.7 3.2E-17 6.9E-22 141.9 14.9 134 3-137 69-219 (490)
2 TIGR01299 synapt_SV2 synaptic 99.7 1.3E-17 2.9E-22 149.0 12.4 145 2-148 213-372 (742)
3 TIGR00887 2A0109 phosphate:H+ 99.7 4.5E-17 9.7E-22 141.4 14.4 139 3-143 68-237 (502)
4 KOG0569|consensus 99.7 1E-16 2.2E-21 135.8 12.4 155 3-163 72-234 (485)
5 KOG0255|consensus 99.7 5.4E-17 1.2E-21 141.5 10.4 142 2-148 129-272 (521)
6 PRK09952 shikimate transporter 99.7 6.7E-16 1.4E-20 131.9 15.5 119 4-123 77-211 (438)
7 TIGR02332 HpaX 4-hydroxyphenyl 99.7 7.1E-16 1.5E-20 130.7 14.9 123 3-127 55-184 (412)
8 KOG2504|consensus 99.7 1.7E-16 3.7E-21 136.8 10.5 134 2-136 92-225 (509)
9 PRK10077 xylE D-xylose transpo 99.7 6.2E-16 1.4E-20 133.3 14.1 135 2-137 66-221 (479)
10 TIGR00898 2A0119 cation transp 99.7 2.7E-16 5.9E-21 136.5 11.7 139 2-145 138-278 (505)
11 PRK14995 methyl viologen resis 99.7 9.5E-16 2E-20 132.9 14.4 124 3-128 53-178 (495)
12 PRK03545 putative arabinose tr 99.7 1.5E-15 3.2E-20 127.8 14.6 124 3-128 56-180 (390)
13 TIGR00893 2A0114 d-galactonate 99.7 4.3E-16 9.4E-21 129.9 11.1 125 3-129 41-166 (399)
14 PRK10406 alpha-ketoglutarate t 99.7 2.4E-15 5.2E-20 128.3 15.2 120 4-124 76-211 (432)
15 PF07690 MFS_1: Major Facilita 99.7 8.6E-16 1.9E-20 126.7 12.2 123 3-127 44-167 (352)
16 TIGR00890 2A0111 Oxalate/Forma 99.7 1.3E-15 2.8E-20 126.6 13.0 124 3-128 50-173 (377)
17 PRK10213 nepI ribonucleoside t 99.7 2.3E-15 5E-20 126.9 14.6 121 3-125 67-188 (394)
18 PRK15403 multidrug efflux syst 99.7 2.2E-15 4.8E-20 127.8 14.5 123 3-127 63-186 (413)
19 PRK09705 cynX putative cyanate 99.7 2.5E-15 5.3E-20 126.7 14.6 118 3-122 56-174 (393)
20 TIGR00892 2A0113 monocarboxyla 99.7 1.7E-15 3.7E-20 130.0 13.8 127 4-131 67-193 (455)
21 KOG1330|consensus 99.7 7.5E-18 1.6E-22 139.2 -1.0 128 2-131 79-208 (493)
22 TIGR00900 2A0121 H+ Antiporter 99.7 2.6E-15 5.6E-20 124.3 14.1 124 3-128 46-175 (365)
23 COG2814 AraJ Arabinose efflux 99.7 2.9E-15 6.3E-20 123.7 14.1 126 3-130 60-186 (394)
24 TIGR00903 2A0129 major facilit 99.7 3.6E-15 7.8E-20 124.5 14.7 123 3-128 38-161 (368)
25 TIGR00891 2A0112 putative sial 99.6 4.3E-15 9.4E-20 124.8 14.9 120 3-124 59-181 (405)
26 KOG2532|consensus 99.6 2.6E-16 5.7E-21 134.1 7.2 127 3-131 85-215 (466)
27 PRK12307 putative sialic acid 99.6 7.2E-15 1.6E-19 124.9 15.3 115 3-119 65-180 (426)
28 KOG3764|consensus 99.6 6.1E-16 1.3E-20 125.7 7.8 129 3-133 118-248 (464)
29 KOG0254|consensus 99.6 2.3E-15 4.9E-20 131.1 12.0 150 3-159 101-254 (513)
30 TIGR00880 2_A_01_02 Multidrug 99.6 1.8E-14 3.8E-19 103.0 14.7 125 3-129 10-135 (141)
31 COG2271 UhpC Sugar phosphate p 99.6 4.2E-16 9.1E-21 127.8 6.8 126 3-130 76-204 (448)
32 TIGR00711 efflux_EmrB drug res 99.6 2.1E-15 4.6E-20 130.1 11.5 124 3-128 49-173 (485)
33 PRK10091 MFS transport protein 99.6 6.5E-15 1.4E-19 123.6 14.1 123 3-127 50-173 (382)
34 PRK11663 regulatory protein Uh 99.6 5.7E-15 1.2E-19 126.0 13.9 121 3-125 70-191 (434)
35 TIGR00881 2A0104 phosphoglycer 99.6 3.3E-15 7.1E-20 124.2 10.5 125 3-129 42-168 (379)
36 PRK11551 putative 3-hydroxyphe 99.6 1.9E-14 4.2E-19 121.5 14.8 123 3-127 62-185 (406)
37 TIGR00806 rfc RFC reduced fola 99.6 7.4E-14 1.6E-18 117.6 18.0 125 3-131 74-202 (511)
38 TIGR00710 efflux_Bcr_CflA drug 99.6 1.3E-14 2.9E-19 121.3 13.6 124 3-128 52-176 (385)
39 PRK15075 citrate-proton sympor 99.6 2.9E-14 6.2E-19 121.7 15.7 114 5-119 70-199 (434)
40 PF00083 Sugar_tr: Sugar (and 99.6 1.7E-18 3.6E-23 148.2 -10.8 151 2-158 57-215 (451)
41 PRK11102 bicyclomycin/multidru 99.6 2.7E-14 5.9E-19 119.3 14.5 123 3-127 38-161 (377)
42 PRK03699 putative transporter; 99.6 3E-14 6.5E-19 120.1 14.3 125 3-129 54-180 (394)
43 TIGR00895 2A0115 benzoate tran 99.6 5.9E-15 1.3E-19 123.6 9.9 120 3-124 64-184 (398)
44 PRK10473 multidrug efflux syst 99.6 2.6E-14 5.7E-19 120.2 13.7 124 3-128 50-174 (392)
45 TIGR00879 SP MFS transporter, 99.6 1.6E-14 3.4E-19 123.6 12.0 124 3-128 83-213 (481)
46 TIGR00894 2A0114euk Na(+)-depe 99.6 6.3E-15 1.4E-19 126.7 9.0 125 3-129 88-216 (465)
47 TIGR00883 2A0106 metabolite-pr 99.6 4.9E-14 1.1E-18 117.8 14.0 121 5-126 49-185 (394)
48 PRK10504 putative transporter; 99.6 4.6E-14 1E-18 121.5 14.2 124 3-128 57-181 (471)
49 PRK15402 multidrug efflux syst 99.6 5.9E-14 1.3E-18 118.6 14.6 124 3-128 60-184 (406)
50 PRK03893 putative sialic acid 99.6 1E-13 2.2E-18 120.1 15.7 115 3-119 67-182 (496)
51 PRK11646 multidrug resistance 99.6 1.3E-13 2.7E-18 116.6 14.9 120 5-127 60-180 (400)
52 KOG2533|consensus 99.6 7.6E-15 1.7E-19 125.7 7.1 127 2-130 92-225 (495)
53 PRK11043 putative transporter; 99.6 1.1E-13 2.5E-18 116.7 14.2 125 3-129 53-178 (401)
54 KOG2615|consensus 99.6 2.2E-14 4.7E-19 116.2 9.2 102 2-106 79-181 (451)
55 PRK11652 emrD multidrug resist 99.5 1.1E-13 2.4E-18 116.5 13.9 122 3-126 55-177 (394)
56 PRK10207 dipeptide/tripeptide 99.5 5.8E-14 1.3E-18 121.4 12.2 116 4-120 63-182 (489)
57 cd06174 MFS The Major Facilita 99.5 1E-13 2.2E-18 114.0 12.7 123 3-127 46-169 (352)
58 PTZ00207 hypothetical protein; 99.5 1.4E-13 3.1E-18 120.1 14.0 126 6-134 76-208 (591)
59 PRK10642 proline/glycine betai 99.5 2.1E-13 4.5E-18 118.2 14.6 150 4-158 299-458 (490)
60 PRK11195 lysophospholipid tran 99.5 1.2E-13 2.7E-18 116.4 12.7 114 3-122 50-164 (393)
61 TIGR00886 2A0108 nitrite extru 99.5 2.1E-13 4.6E-18 113.4 13.6 116 3-121 49-177 (366)
62 PLN00028 nitrate transmembrane 99.5 2.5E-13 5.4E-18 117.3 14.4 124 3-129 83-216 (476)
63 PRK09874 drug efflux system pr 99.5 2.9E-13 6.2E-18 114.3 14.3 122 3-127 66-188 (408)
64 PRK09556 uhpT sugar phosphate 99.5 3.2E-14 7E-19 122.5 8.6 125 3-129 76-209 (467)
65 PRK05122 major facilitator sup 99.5 1.3E-13 2.8E-18 116.3 12.0 118 3-122 63-189 (399)
66 PRK12382 putative transporter; 99.5 3.3E-13 7.2E-18 113.5 13.8 116 3-119 63-186 (392)
67 TIGR00924 yjdL_sub1_fam amino 99.5 2.4E-13 5.1E-18 117.3 12.5 123 3-127 60-187 (475)
68 TIGR00885 fucP L-fucose:H+ sym 99.5 4.1E-13 8.9E-18 113.8 13.3 124 3-128 50-203 (410)
69 TIGR00712 glpT glycerol-3-phos 99.5 5.1E-13 1.1E-17 114.2 12.5 123 3-127 73-201 (438)
70 PRK11273 glpT sn-glycerol-3-ph 99.5 6.1E-13 1.3E-17 114.1 12.9 123 3-127 75-203 (452)
71 TIGR01299 synapt_SV2 synaptic 99.5 1.3E-12 2.7E-17 117.3 15.2 125 3-130 607-732 (742)
72 PRK10054 putative transporter; 99.5 7.6E-13 1.6E-17 111.7 13.1 122 3-127 55-177 (395)
73 PF06609 TRI12: Fungal trichot 99.5 3.2E-13 7E-18 117.4 11.0 130 4-136 91-222 (599)
74 TIGR00899 2A0120 sugar efflux 99.5 1.2E-12 2.6E-17 109.2 13.7 123 4-128 46-172 (375)
75 PRK15034 nitrate/nitrite trans 99.5 1.5E-12 3.4E-17 110.7 14.2 125 3-130 82-230 (462)
76 PRK09584 tppB putative tripept 99.4 1.7E-12 3.7E-17 112.7 13.4 118 7-125 73-194 (500)
77 TIGR00896 CynX cyanate transpo 99.4 3.3E-12 7.2E-17 106.1 14.0 117 3-122 47-165 (355)
78 PRK10133 L-fucose transporter; 99.4 3.9E-12 8.5E-17 108.7 14.6 101 3-105 73-177 (438)
79 PRK06814 acylglycerophosphoeth 99.4 1.8E-12 3.8E-17 122.8 13.6 125 3-129 64-192 (1140)
80 PRK15462 dipeptide/tripeptide 99.4 2.5E-12 5.4E-17 110.5 12.9 120 4-125 58-182 (493)
81 TIGR00889 2A0110 nucleoside tr 99.4 6.1E-12 1.3E-16 107.0 14.9 124 5-129 265-399 (418)
82 PRK10489 enterobactin exporter 99.4 1.3E-12 2.8E-17 110.9 10.6 125 3-128 64-193 (417)
83 PRK05122 major facilitator sup 99.4 6.6E-12 1.4E-16 105.9 14.6 125 4-130 262-387 (399)
84 PRK15011 sugar efflux transpor 99.4 1E-11 2.3E-16 104.6 15.3 125 5-131 266-390 (393)
85 TIGR00897 2A0118 polyol permea 99.4 5.7E-12 1.2E-16 106.5 13.3 116 3-119 60-180 (402)
86 PRK03633 putative MFS family t 99.4 9.1E-12 2E-16 104.5 14.1 106 3-110 53-159 (381)
87 TIGR00805 oat sodium-independe 99.4 1.3E-12 2.8E-17 116.2 9.4 124 3-127 80-276 (633)
88 PRK12382 putative transporter; 99.4 8.5E-12 1.8E-16 105.0 13.6 125 4-130 262-387 (392)
89 PRK11010 ampG muropeptide tran 99.4 2E-11 4.2E-16 105.9 15.4 123 6-130 60-193 (491)
90 PRK09528 lacY galactoside perm 99.4 1.3E-11 2.7E-16 105.0 13.6 123 4-128 275-399 (420)
91 KOG0253|consensus 99.4 1.5E-12 3.4E-17 105.3 7.0 143 2-148 124-268 (528)
92 TIGR00899 2A0120 sugar efflux 99.4 2.7E-11 5.9E-16 101.0 14.8 123 5-129 249-371 (375)
93 PRK08633 2-acyl-glycerophospho 99.3 1.4E-11 3.1E-16 116.7 13.5 104 3-107 59-165 (1146)
94 PRK11902 ampG muropeptide tran 99.3 5.4E-11 1.2E-15 100.6 14.9 121 5-127 46-177 (402)
95 TIGR00901 2A0125 AmpG-related 99.3 6.3E-11 1.4E-15 98.4 14.9 120 8-129 38-175 (356)
96 PRK15011 sugar efflux transpor 99.3 4.7E-11 1E-15 100.7 13.8 120 6-128 67-190 (393)
97 PRK09874 drug efflux system pr 99.3 2.4E-11 5.2E-16 102.6 11.7 123 5-129 272-395 (408)
98 cd06174 MFS The Major Facilita 99.3 5.1E-11 1.1E-15 97.9 13.0 125 3-129 223-349 (352)
99 TIGR00890 2A0111 Oxalate/Forma 99.3 3E-11 6.6E-16 100.3 11.5 120 4-124 253-374 (377)
100 PRK03893 putative sialic acid 99.3 7E-11 1.5E-15 102.4 14.0 117 3-121 323-442 (496)
101 KOG0252|consensus 99.3 8.3E-12 1.8E-16 103.7 7.6 128 3-131 96-245 (538)
102 PRK10489 enterobactin exporter 99.2 2.2E-10 4.8E-15 97.3 14.2 123 4-128 272-395 (417)
103 PRK03545 putative arabinose tr 99.2 3.7E-10 8E-15 95.1 14.7 125 4-130 254-378 (390)
104 COG2223 NarK Nitrate/nitrite t 99.2 5.3E-11 1.1E-15 98.1 9.0 123 4-130 62-191 (417)
105 PRK03699 putative transporter; 99.2 2.9E-10 6.3E-15 95.9 13.1 122 4-127 254-375 (394)
106 PRK11128 putative 3-phenylprop 99.2 1.7E-10 3.7E-15 96.9 11.5 117 3-124 51-171 (382)
107 PRK09556 uhpT sugar phosphate 99.2 2.9E-10 6.3E-15 98.0 13.2 126 3-129 306-446 (467)
108 PRK11551 putative 3-hydroxyphe 99.2 3.4E-10 7.4E-15 95.6 13.4 124 4-129 268-393 (406)
109 TIGR00882 2A0105 oligosacchari 99.2 5E-10 1.1E-14 94.5 14.0 126 3-130 50-181 (396)
110 TIGR00892 2A0113 monocarboxyla 99.2 1.3E-10 2.8E-15 99.9 10.1 120 5-126 290-415 (455)
111 PRK09952 shikimate transporter 99.2 9.6E-10 2.1E-14 94.1 15.3 126 5-130 300-431 (438)
112 TIGR00902 2A0127 phenyl propri 99.2 3.1E-10 6.7E-15 95.3 11.8 115 3-120 51-167 (382)
113 TIGR00897 2A0118 polyol permea 99.2 8.8E-10 1.9E-14 93.2 14.6 127 3-131 269-400 (402)
114 TIGR00902 2A0127 phenyl propri 99.2 9.7E-10 2.1E-14 92.4 14.7 120 4-127 253-374 (382)
115 COG2807 CynX Cyanate permease 99.1 1.7E-09 3.7E-14 87.7 13.8 124 3-129 59-183 (395)
116 PRK10077 xylE D-xylose transpo 99.1 8.2E-10 1.8E-14 95.3 12.2 125 4-129 319-454 (479)
117 PRK09528 lacY galactoside perm 99.1 1.4E-09 3E-14 92.5 13.4 126 3-130 58-189 (420)
118 TIGR00879 SP MFS transporter, 99.1 5.3E-10 1.1E-14 95.7 10.8 126 3-130 331-468 (481)
119 PRK03633 putative MFS family t 99.1 2.6E-09 5.6E-14 89.7 14.5 120 4-128 248-368 (381)
120 TIGR00898 2A0119 cation transp 99.1 1.8E-09 4E-14 93.9 13.0 123 5-130 369-493 (505)
121 COG3104 PTR2 Dipeptide/tripept 99.1 3.8E-10 8.2E-15 95.1 8.2 125 5-131 75-205 (498)
122 PF05977 MFS_3: Transmembrane 99.1 2.3E-09 5.1E-14 93.2 13.3 123 4-127 58-185 (524)
123 TIGR00887 2A0109 phosphate:H+ 99.1 2E-09 4.4E-14 93.7 12.4 122 6-128 350-485 (502)
124 PLN00028 nitrate transmembrane 99.1 7.8E-10 1.7E-14 95.6 9.5 130 4-136 301-437 (476)
125 COG0738 FucP Fucose permease [ 99.1 4E-09 8.7E-14 86.8 12.9 128 2-131 59-209 (422)
126 TIGR00792 gph sugar (Glycoside 99.1 7.8E-09 1.7E-13 88.1 15.2 106 3-110 269-383 (437)
127 PRK12307 putative sialic acid 99.1 5.3E-09 1.1E-13 88.9 14.1 112 4-118 279-394 (426)
128 TIGR00882 2A0105 oligosacchari 99.0 3.4E-09 7.3E-14 89.4 12.6 122 5-128 268-391 (396)
129 PRK09705 cynX putative cyanate 99.0 6.3E-09 1.4E-13 87.8 14.2 126 3-131 252-380 (393)
130 PF05977 MFS_3: Transmembrane 99.0 1.4E-08 3.1E-13 88.4 16.4 124 4-129 267-391 (524)
131 TIGR00883 2A0106 metabolite-pr 99.0 1.9E-09 4.2E-14 90.0 10.6 116 4-121 268-390 (394)
132 TIGR01272 gluP glucose/galacto 99.0 6.1E-09 1.3E-13 85.1 12.6 114 3-120 190-303 (310)
133 PRK11273 glpT sn-glycerol-3-ph 99.0 8.7E-09 1.9E-13 88.5 14.1 124 4-129 302-432 (452)
134 TIGR00893 2A0114 d-galactonate 99.0 4.9E-09 1.1E-13 87.3 12.1 123 4-128 264-395 (399)
135 PRK11010 ampG muropeptide tran 99.0 1.4E-08 3.1E-13 88.2 15.3 127 3-131 271-402 (491)
136 TIGR00891 2A0112 putative sial 99.0 3.1E-09 6.7E-14 89.3 10.9 112 3-116 286-400 (405)
137 PRK11128 putative 3-phenylprop 99.0 1.4E-08 3E-13 85.3 14.2 116 5-123 254-370 (382)
138 PRK10504 putative transporter; 99.0 1.6E-08 3.5E-13 87.2 14.8 103 6-110 312-418 (471)
139 PRK11663 regulatory protein Uh 99.0 8.3E-09 1.8E-13 88.2 12.7 126 3-129 291-421 (434)
140 PF11700 ATG22: Vacuole efflux 99.0 2.4E-08 5.2E-13 86.1 14.8 127 3-131 329-467 (477)
141 PF01306 LacY_symp: LacY proto 98.9 3.7E-08 7.9E-13 82.6 14.4 123 6-130 274-398 (412)
142 PRK10054 putative transporter; 98.9 3.4E-08 7.3E-13 83.5 14.3 120 5-127 258-379 (395)
143 TIGR01301 GPH_sucrose GPH fami 98.9 3.2E-08 6.9E-13 85.1 13.7 126 3-129 51-215 (477)
144 TIGR02718 sider_RhtX_FptX side 98.9 5.8E-08 1.3E-12 81.7 15.0 121 5-126 258-385 (390)
145 COG2814 AraJ Arabinose efflux 98.9 3.5E-08 7.7E-13 82.0 13.0 125 4-130 260-384 (394)
146 TIGR00788 fbt folate/biopterin 98.9 1.7E-08 3.6E-13 87.2 11.6 124 7-131 76-208 (468)
147 TIGR00900 2A0121 H+ Antiporter 98.9 1.9E-08 4.2E-13 83.1 11.7 104 4-109 260-365 (365)
148 TIGR00792 gph sugar (Glycoside 98.9 9.1E-09 2E-13 87.7 9.7 125 3-128 47-190 (437)
149 PRK15402 multidrug efflux syst 98.9 3.5E-08 7.6E-13 83.5 13.1 119 4-124 264-387 (406)
150 PRK15075 citrate-proton sympor 98.9 4.2E-08 9.1E-13 83.9 13.7 107 4-111 287-398 (434)
151 PRK10091 MFS transport protein 98.9 4E-08 8.6E-13 82.6 13.1 122 3-127 247-371 (382)
152 PF06813 Nodulin-like: Nodulin 98.9 4.2E-08 9.1E-13 77.1 12.3 122 8-132 53-182 (250)
153 COG2271 UhpC Sugar phosphate p 98.9 7.6E-09 1.7E-13 85.6 8.3 124 4-129 301-431 (448)
154 PRK11902 ampG muropeptide tran 98.9 9.2E-08 2E-12 80.9 14.2 120 4-128 259-386 (402)
155 PRK10133 L-fucose transporter; 98.8 5.3E-08 1.1E-12 83.4 12.5 121 3-127 307-428 (438)
156 PRK15034 nitrate/nitrite trans 98.8 5E-08 1.1E-12 83.4 12.1 125 4-129 299-451 (462)
157 PRK10406 alpha-ketoglutarate t 98.8 1.1E-07 2.4E-12 81.3 13.8 126 4-131 292-423 (432)
158 PRK10213 nepI ribonucleoside t 98.8 1.7E-07 3.6E-12 79.2 14.7 118 4-124 265-383 (394)
159 TIGR00710 efflux_Bcr_CflA drug 98.8 1.4E-07 3.1E-12 78.8 14.1 111 4-115 255-369 (385)
160 PF03825 Nuc_H_symport: Nucleo 98.8 2.1E-07 4.6E-12 78.6 15.0 106 7-113 259-370 (400)
161 KOG0253|consensus 98.8 1.5E-08 3.3E-13 82.6 6.3 117 5-128 395-515 (528)
162 TIGR02332 HpaX 4-hydroxyphenyl 98.8 3.7E-08 8.1E-13 83.7 8.5 115 4-120 292-409 (412)
163 COG2223 NarK Nitrate/nitrite t 98.7 2.9E-08 6.2E-13 82.2 7.4 123 5-129 268-398 (417)
164 TIGR00885 fucP L-fucose:H+ sym 98.7 1.5E-07 3.3E-12 79.9 12.1 118 3-124 281-404 (410)
165 KOG3762|consensus 98.7 6.7E-08 1.5E-12 82.2 9.6 124 6-131 421-546 (618)
166 PF05631 DUF791: Protein of un 98.7 1.1E-06 2.4E-11 71.8 16.3 121 4-127 82-211 (354)
167 TIGR00895 2A0115 benzoate tran 98.7 1E-07 2.2E-12 79.8 10.6 100 3-104 297-397 (398)
168 PRK08633 2-acyl-glycerophospho 98.7 1.5E-07 3.3E-12 89.6 12.3 117 3-121 281-399 (1146)
169 PRK11646 multidrug resistance 98.7 2.7E-07 5.9E-12 78.1 12.5 96 11-108 263-360 (400)
170 PRK09848 glucuronide transport 98.7 6.3E-07 1.4E-11 76.9 14.7 105 4-110 277-391 (448)
171 TIGR02718 sider_RhtX_FptX side 98.7 5.6E-07 1.2E-11 75.8 14.0 125 6-130 53-182 (390)
172 TIGR00889 2A0110 nucleoside tr 98.7 3.2E-07 6.9E-12 78.1 11.6 116 3-127 50-175 (418)
173 TIGR00712 glpT glycerol-3-phos 98.7 1.8E-07 3.9E-12 80.1 9.8 124 4-129 300-430 (438)
174 COG2270 Permeases of the major 98.6 2.2E-07 4.7E-12 77.2 9.6 123 3-127 300-424 (438)
175 TIGR00903 2A0129 major facilit 98.6 6.6E-07 1.4E-11 75.0 12.3 121 5-129 237-362 (368)
176 KOG4686|consensus 98.6 3.7E-07 7.9E-12 72.3 9.7 113 3-119 312-429 (459)
177 PRK09669 putative symporter Ya 98.6 1.9E-06 4.2E-11 73.9 15.1 105 5-110 278-391 (444)
178 TIGR00881 2A0104 phosphoglycer 98.6 3.7E-07 8E-12 75.8 10.2 110 3-114 264-379 (379)
179 TIGR00711 efflux_EmrB drug res 98.6 4.5E-07 9.7E-12 78.4 11.0 103 3-107 303-410 (485)
180 PRK10429 melibiose:sodium symp 98.6 1.7E-06 3.7E-11 74.9 14.3 106 4-110 279-396 (473)
181 PRK06814 acylglycerophosphoeth 98.6 4E-07 8.6E-12 86.8 11.1 119 3-123 273-413 (1140)
182 PRK09584 tppB putative tripept 98.6 1E-06 2.2E-11 76.8 12.6 113 12-126 341-473 (500)
183 PRK14995 methyl viologen resis 98.6 5.6E-07 1.2E-11 78.3 11.0 102 4-107 308-413 (495)
184 PRK11195 lysophospholipid tran 98.6 7.6E-07 1.7E-11 75.2 11.5 122 4-129 254-377 (393)
185 TIGR00924 yjdL_sub1_fam amino 98.5 1.4E-06 3.1E-11 75.4 12.6 115 13-129 338-465 (475)
186 PRK11043 putative transporter; 98.5 3E-06 6.5E-11 71.6 14.3 108 4-112 251-362 (401)
187 TIGR00896 CynX cyanate transpo 98.5 1E-06 2.3E-11 73.1 11.3 104 3-109 244-350 (355)
188 KOG0569|consensus 98.5 2.3E-06 5E-11 73.3 13.2 124 4-129 318-451 (485)
189 TIGR00894 2A0114euk Na(+)-depe 98.5 7.4E-07 1.6E-11 76.8 10.3 125 3-129 309-447 (465)
190 KOG2816|consensus 98.5 1.4E-06 3E-11 74.8 11.3 121 4-131 75-198 (463)
191 COG0477 ProP Permeases of the 98.5 3.6E-06 7.8E-11 67.0 13.1 115 5-121 53-174 (338)
192 PRK09669 putative symporter Ya 98.5 1.1E-06 2.4E-11 75.4 10.6 123 4-128 58-200 (444)
193 KOG2504|consensus 98.5 3.6E-07 7.8E-12 79.4 7.5 124 5-130 347-474 (509)
194 PRK10473 multidrug efflux syst 98.5 4.2E-06 9.1E-11 70.4 13.9 109 4-119 252-361 (392)
195 KOG3764|consensus 98.5 9.2E-07 2E-11 73.0 8.6 127 3-131 318-453 (464)
196 PRK10207 dipeptide/tripeptide 98.4 4.2E-06 9.1E-11 72.8 12.7 123 5-128 323-472 (489)
197 PF13347 MFS_2: MFS/sugar tran 98.4 2.9E-06 6.2E-11 72.5 10.3 106 3-110 272-387 (428)
198 TIGR00926 2A1704 Peptide:H+ sy 98.4 1.1E-05 2.5E-10 72.1 13.7 125 4-129 36-179 (654)
199 KOG0252|consensus 98.4 2.8E-07 6E-12 77.3 3.2 127 4-131 361-497 (538)
200 PF07690 MFS_1: Major Facilita 98.3 3.3E-06 7E-11 69.5 9.3 92 5-98 257-352 (352)
201 TIGR00901 2A0125 AmpG-related 98.3 3.9E-06 8.5E-11 69.7 9.4 86 4-91 258-355 (356)
202 KOG2325|consensus 98.3 4.8E-06 1E-10 71.2 9.8 101 3-105 83-189 (488)
203 PRK10429 melibiose:sodium symp 98.3 8.8E-06 1.9E-10 70.5 11.6 117 5-123 56-192 (473)
204 PF05978 UNC-93: Ion channel r 98.3 1.5E-05 3.2E-10 58.2 10.9 98 4-104 50-148 (156)
205 PRK11652 emrD multidrug resist 98.3 2.8E-05 6.1E-10 65.5 14.1 104 5-110 257-363 (394)
206 PRK11102 bicyclomycin/multidru 98.3 3.2E-05 7E-10 64.6 14.1 98 4-102 243-344 (377)
207 COG0738 FucP Fucose permease [ 98.3 6.7E-06 1.5E-10 68.1 9.5 120 2-125 283-402 (422)
208 TIGR00788 fbt folate/biopterin 98.3 5.8E-06 1.3E-10 71.5 9.4 105 4-109 301-415 (468)
209 PF13347 MFS_2: MFS/sugar tran 98.2 2.7E-06 5.8E-11 72.7 6.4 124 4-129 50-195 (428)
210 TIGR01272 gluP glucose/galacto 98.2 2.1E-05 4.5E-10 64.4 11.0 89 41-130 6-111 (310)
211 PRK11462 putative transporter; 98.2 4.1E-05 8.8E-10 66.2 12.6 121 5-127 59-199 (460)
212 PF01770 Folate_carrier: Reduc 98.2 0.00029 6.2E-09 59.3 16.7 129 4-135 54-185 (412)
213 KOG0254|consensus 98.1 4E-05 8.8E-10 67.1 11.5 122 4-126 342-476 (513)
214 PF03209 PUCC: PUCC protein; 98.1 0.00016 3.4E-09 60.4 13.5 110 6-116 29-160 (403)
215 PRK11462 putative transporter; 98.1 0.00012 2.5E-09 63.4 13.1 105 5-110 277-390 (460)
216 PF03092 BT1: BT1 family; Int 98.0 7.3E-05 1.6E-09 64.1 11.7 124 6-130 39-173 (433)
217 COG2807 CynX Cyanate permease 98.0 0.00017 3.7E-09 59.2 12.6 124 5-131 257-384 (395)
218 PF06609 TRI12: Fungal trichot 98.0 8.1E-05 1.7E-09 65.7 11.4 131 5-136 363-558 (599)
219 COG2211 MelB Na+/melibiose sym 98.0 0.00019 4.1E-09 61.4 13.0 103 5-109 286-398 (467)
220 PF00854 PTR2: POT family; In 97.9 7.6E-05 1.6E-09 62.6 9.3 107 22-130 2-121 (372)
221 COG2211 MelB Na+/melibiose sym 97.9 0.00015 3.3E-09 61.9 10.3 124 5-130 62-205 (467)
222 KOG0255|consensus 97.9 0.00036 7.9E-09 61.2 12.9 98 8-106 367-467 (521)
223 PF01306 LacY_symp: LacY proto 97.9 6.6E-05 1.4E-09 63.3 7.7 125 4-130 56-186 (412)
224 KOG2532|consensus 97.8 4.3E-05 9.4E-10 65.8 6.6 126 3-130 306-445 (466)
225 PRK15403 multidrug efflux syst 97.8 0.00063 1.4E-08 57.9 13.6 73 50-123 316-388 (413)
226 TIGR00886 2A0108 nitrite extru 97.8 2.7E-05 6E-10 64.6 5.0 88 4-93 274-365 (366)
227 PF00083 Sugar_tr: Sugar (and 97.8 1.6E-07 3.5E-12 80.4 -9.0 124 4-127 299-431 (451)
228 TIGR01301 GPH_sucrose GPH fami 97.8 0.00089 1.9E-08 58.0 13.8 123 6-130 320-469 (477)
229 KOG4686|consensus 97.7 1.2E-05 2.6E-10 63.9 0.8 102 5-107 93-198 (459)
230 PF11700 ATG22: Vacuole efflux 97.6 0.0029 6.3E-08 54.9 14.8 122 3-124 82-239 (477)
231 PRK09848 glucuronide transport 97.6 0.001 2.2E-08 57.2 10.9 98 4-102 57-172 (448)
232 KOG2563|consensus 97.5 0.00049 1.1E-08 58.1 8.4 104 3-107 91-202 (480)
233 PF03209 PUCC: PUCC protein; 97.5 0.0042 9.1E-08 52.1 13.7 121 4-126 257-392 (403)
234 PF03825 Nuc_H_symport: Nucleo 97.5 0.0028 6.2E-08 53.8 13.0 70 4-75 50-120 (400)
235 PTZ00207 hypothetical protein; 97.4 0.0031 6.8E-08 56.0 12.6 124 5-130 405-550 (591)
236 KOG2533|consensus 97.4 0.0013 2.9E-08 57.1 9.9 115 3-119 321-443 (495)
237 PF03137 OATP: Organic Anion T 97.4 2.6E-05 5.7E-10 68.4 -0.6 101 4-105 51-201 (539)
238 KOG3626|consensus 97.4 0.0013 2.8E-08 59.1 9.1 101 5-106 146-298 (735)
239 PF02487 CLN3: CLN3 protein; 97.3 0.0093 2E-07 50.3 12.8 115 6-127 74-190 (402)
240 PRK15462 dipeptide/tripeptide 97.0 0.023 5E-07 49.5 12.9 97 6-104 323-437 (493)
241 PRK03612 spermidine synthase; 97.0 0.029 6.4E-07 49.3 13.7 65 53-117 117-182 (521)
242 KOG3098|consensus 96.9 0.0027 5.9E-08 54.4 6.8 97 4-103 63-160 (461)
243 KOG4332|consensus 96.4 0.0081 1.8E-07 47.8 5.5 68 5-75 86-154 (454)
244 COG2270 Permeases of the major 96.4 0.032 7E-07 47.1 9.1 93 4-97 71-167 (438)
245 PF06963 FPN1: Ferroportin1 (F 96.3 0.33 7.2E-06 41.7 14.8 124 4-127 51-195 (432)
246 TIGR00769 AAA ADP/ATP carrier 96.2 0.27 5.8E-06 42.8 14.2 97 7-105 60-189 (472)
247 COG3104 PTR2 Dipeptide/tripept 96.0 0.13 2.8E-06 44.5 11.1 122 5-128 338-483 (498)
248 KOG1237|consensus 95.9 0.046 9.9E-07 48.6 8.5 124 4-128 86-241 (571)
249 KOG0637|consensus 95.8 0.024 5.1E-07 48.3 5.7 100 4-104 80-202 (498)
250 KOG2816|consensus 95.7 0.083 1.8E-06 45.8 9.0 99 5-106 291-391 (463)
251 KOG2615|consensus 95.7 0.053 1.2E-06 45.3 7.3 97 8-106 314-413 (451)
252 PF03092 BT1: BT1 family; Int 95.6 0.1 2.2E-06 44.9 9.1 104 5-109 269-382 (433)
253 KOG2563|consensus 95.4 0.023 5E-07 48.3 4.5 128 3-131 313-449 (480)
254 KOG3098|consensus 95.4 0.3 6.5E-06 42.2 11.0 93 6-100 294-407 (461)
255 PF02487 CLN3: CLN3 protein; 94.4 0.6 1.3E-05 39.6 10.2 63 41-104 331-394 (402)
256 PF12832 MFS_1_like: MFS_1 lik 94.2 0.041 9E-07 35.0 2.2 29 3-31 47-75 (77)
257 PF06779 DUF1228: Protein of u 93.5 0.14 3E-06 33.2 3.8 46 2-48 38-83 (85)
258 KOG1330|consensus 92.8 0.28 6E-06 42.1 5.6 108 3-111 295-417 (493)
259 PF13000 Acatn: Acetyl-coenzym 90.2 10 0.00022 33.4 12.2 38 64-101 136-174 (544)
260 TIGR00769 AAA ADP/ATP carrier 88.3 12 0.00025 32.8 11.6 71 53-123 273-345 (472)
261 KOG3574|consensus 88.0 3.6 7.7E-05 34.9 7.8 91 9-100 81-188 (510)
262 TIGR00806 rfc RFC reduced fola 87.3 1.2 2.6E-05 38.8 5.0 83 4-88 311-396 (511)
263 KOG2325|consensus 86.4 0.26 5.5E-06 42.8 0.5 74 54-127 396-470 (488)
264 TIGR00939 2a57 Equilibrative N 85.1 18 0.0004 31.2 11.1 45 50-98 110-154 (437)
265 KOG3097|consensus 84.6 3.5 7.5E-05 34.2 6.0 96 5-103 72-183 (390)
266 PF03219 TLC: TLC ATP/ADP tran 84.1 27 0.00058 30.8 11.7 68 54-121 290-359 (491)
267 KOG3810|consensus 81.8 3.3 7.1E-05 34.6 4.9 121 9-132 60-183 (433)
268 COG5336 Uncharacterized protei 80.4 2 4.4E-05 28.9 2.7 35 31-67 60-94 (116)
269 TIGR01667 YCCS_YHJK integral m 78.5 30 0.00065 32.0 10.4 53 8-61 40-96 (701)
270 PF03219 TLC: TLC ATP/ADP tran 78.3 48 0.001 29.3 15.7 101 5-106 73-205 (491)
271 KOG3762|consensus 77.7 1.6 3.5E-05 38.4 2.1 37 3-39 58-95 (618)
272 KOG4332|consensus 77.2 26 0.00057 28.5 8.5 72 53-124 351-423 (454)
273 KOG3880|consensus 77.0 20 0.00043 29.7 7.8 70 30-101 328-398 (409)
274 TIGR01666 YCCS hypothetical me 76.0 39 0.00085 31.3 10.4 53 7-60 39-95 (704)
275 TIGR00926 2A1704 Peptide:H+ sy 75.3 34 0.00074 31.4 9.9 52 53-104 572-624 (654)
276 PF12805 FUSC-like: FUSC-like 75.0 42 0.00092 27.0 9.9 13 27-39 5-17 (284)
277 PRK10263 DNA translocase FtsK; 72.1 67 0.0014 32.0 11.1 28 92-119 142-169 (1355)
278 PF06912 DUF1275: Protein of u 71.7 42 0.00091 25.6 12.4 25 86-110 167-191 (209)
279 PF06963 FPN1: Ferroportin1 (F 71.1 54 0.0012 28.4 9.7 97 4-100 306-411 (432)
280 KOG0637|consensus 68.2 3 6.4E-05 36.1 1.5 104 5-110 346-473 (498)
281 PF11947 DUF3464: Protein of u 68.0 26 0.00057 25.5 6.0 31 65-95 113-144 (153)
282 KOG1237|consensus 67.8 29 0.00062 31.3 7.6 58 50-107 462-520 (571)
283 PF10101 DUF2339: Predicted me 66.5 95 0.0021 28.8 11.0 110 18-131 1-111 (745)
284 PF01770 Folate_carrier: Reduc 66.3 36 0.00077 29.3 7.5 82 4-87 298-382 (412)
285 PF10225 DUF2215: Uncharacteri 64.6 70 0.0015 25.4 10.9 30 70-100 56-85 (249)
286 KOG3880|consensus 63.7 22 0.00047 29.5 5.4 121 9-135 80-203 (409)
287 PF07857 DUF1632: CEO family ( 60.5 86 0.0019 25.0 9.3 13 120-132 124-136 (254)
288 PF07672 MFS_Mycoplasma: Mycop 59.3 9.9 0.00021 30.3 2.8 54 78-131 3-61 (267)
289 PF03547 Mem_trans: Membrane t 57.2 91 0.002 26.2 8.5 15 5-19 9-23 (385)
290 TIGR00939 2a57 Equilibrative N 55.0 1.2E+02 0.0027 26.2 9.0 52 50-101 376-428 (437)
291 KOG1479|consensus 51.4 1.6E+02 0.0034 25.4 13.9 26 53-78 124-149 (406)
292 PF12273 RCR: Chitin synthesis 49.3 6.2 0.00013 27.8 0.2 10 111-120 1-10 (130)
293 PF11712 Vma12: Endoplasmic re 49.2 79 0.0017 22.6 5.9 48 18-65 75-124 (142)
294 PF09527 ATPase_gene1: Putativ 49.0 28 0.00061 20.2 3.0 8 53-60 38-45 (55)
295 PF07672 MFS_Mycoplasma: Mycop 48.8 1.4E+02 0.0031 24.0 8.1 35 3-37 153-192 (267)
296 COG5336 Uncharacterized protei 48.3 86 0.0019 21.4 6.3 31 78-108 39-69 (116)
297 PF02990 EMP70: Endomembrane p 47.9 1.2E+02 0.0026 27.0 8.0 60 54-113 266-332 (521)
298 KOG3810|consensus 47.8 31 0.00068 29.1 4.0 83 4-88 284-369 (433)
299 PF02694 UPF0060: Uncharacteri 47.6 14 0.0003 25.0 1.7 34 4-37 67-100 (107)
300 PRK02237 hypothetical protein; 46.2 19 0.0004 24.5 2.1 31 5-35 70-100 (109)
301 COG2076 EmrE Membrane transpor 45.4 96 0.0021 21.1 7.9 9 79-87 56-64 (106)
302 PHA03242 envelope glycoprotein 45.0 2.1E+02 0.0045 24.8 9.1 21 73-93 280-300 (428)
303 PF01528 Herpes_glycop: Herpes 44.9 2E+02 0.0042 24.5 12.6 16 74-89 267-282 (374)
304 PF12832 MFS_1_like: MFS_1 lik 44.5 78 0.0017 19.8 6.9 57 60-118 16-72 (77)
305 COG3202 ATP/ADP translocase [E 44.2 2.3E+02 0.005 25.2 14.6 101 4-106 75-209 (509)
306 PHA03231 glycoprotein BALF4; P 42.5 1.4E+02 0.0031 28.2 7.7 19 86-104 679-697 (829)
307 PF06779 DUF1228: Protein of u 40.1 1E+02 0.0022 19.9 8.1 55 63-120 11-66 (85)
308 PF15061 DUF4538: Domain of un 39.6 25 0.00055 20.9 1.7 20 109-128 4-23 (58)
309 PF03601 Cons_hypoth698: Conse 35.2 2.1E+02 0.0045 23.6 7.0 51 54-104 116-169 (305)
310 PF04632 FUSC: Fusaric acid re 32.7 3.8E+02 0.0083 24.4 10.8 22 110-131 130-151 (650)
311 PTZ00370 STEVOR; Provisional 32.4 1E+02 0.0022 25.0 4.5 19 109-127 256-274 (296)
312 PF05631 DUF791: Protein of un 31.8 2E+02 0.0043 24.3 6.4 42 84-125 72-113 (354)
313 COG3202 ATP/ADP translocase [E 30.3 4E+02 0.0086 23.8 11.9 71 54-124 292-365 (509)
314 PF11299 DUF3100: Protein of u 29.8 2.8E+02 0.0061 21.9 8.3 47 53-99 178-224 (241)
315 COG2855 Predicted membrane pro 28.6 3.3E+02 0.0072 22.7 7.1 52 54-105 125-179 (334)
316 KOG3626|consensus 28.6 5E+02 0.011 24.5 8.8 61 48-108 396-456 (735)
317 COG1268 BioY Uncharacterized c 28.5 99 0.0021 23.3 3.8 18 3-20 94-111 (184)
318 TIGR00805 oat sodium-independe 28.4 4.6E+02 0.01 24.0 9.8 19 93-111 379-397 (633)
319 TIGR00698 conserved hypothetic 27.6 3.5E+02 0.0077 22.6 7.2 52 54-105 122-176 (335)
320 PRK11099 putative inner membra 27.0 4.1E+02 0.0089 22.9 12.4 29 50-78 288-316 (399)
321 PF07760 DUF1616: Protein of u 26.1 3.6E+02 0.0077 21.9 9.7 25 53-78 26-50 (287)
322 PF14851 FAM176: FAM176 family 25.9 2.7E+02 0.0058 20.4 6.1 9 113-121 24-32 (153)
323 KOG1278|consensus 25.8 2.7E+02 0.0058 25.1 6.3 21 76-96 358-378 (628)
324 KOG3817|consensus 24.5 3.5E+02 0.0075 22.9 6.4 24 53-78 167-190 (452)
325 TIGR00383 corA magnesium Mg(2+ 24.1 1.4E+02 0.003 24.3 4.4 19 108-126 288-306 (318)
326 PRK09541 emrE multidrug efflux 24.1 2.4E+02 0.0052 19.2 7.5 20 24-44 7-26 (110)
327 PF10785 NADH-u_ox-rdase: NADH 23.9 1.3E+02 0.0029 19.5 3.3 34 6-39 33-73 (86)
328 KOG1479|consensus 23.9 2.4E+02 0.0053 24.3 5.7 51 50-100 347-398 (406)
329 PF06645 SPC12: Microsomal sig 23.9 2E+02 0.0043 18.1 6.5 33 86-121 13-45 (76)
330 PF13829 DUF4191: Domain of un 23.5 3.1E+02 0.0067 21.5 5.7 23 35-58 42-64 (224)
331 COG2274 SunT ABC-type bacterio 22.9 6.4E+02 0.014 23.7 11.4 14 5-18 171-184 (709)
332 KOG4112|consensus 22.8 2.4E+02 0.0052 18.7 7.1 31 80-111 22-52 (101)
333 PRK10692 hypothetical protein; 22.8 2.3E+02 0.0049 18.5 5.6 19 20-38 3-21 (92)
334 PRK09546 zntB zinc transporter 22.5 1.3E+02 0.0028 24.8 3.8 25 108-132 294-319 (324)
335 PF07274 DUF1440: Protein of u 21.9 2.7E+02 0.0059 19.8 4.8 28 57-84 59-89 (135)
336 PF13782 SpoVAB: Stage V sporu 21.5 2.8E+02 0.006 19.0 8.0 49 50-99 52-105 (110)
337 PHA03237 envelope glycoprotein 21.4 5.5E+02 0.012 22.3 11.3 19 75-93 285-303 (424)
338 PF12046 DUF3529: Protein of u 21.3 3.6E+02 0.0077 20.2 6.3 29 86-114 86-114 (173)
339 KOG3574|consensus 21.2 2.3E+02 0.005 24.6 4.9 58 53-110 376-434 (510)
340 PF01914 MarC: MarC family int 21.1 3.8E+02 0.0083 20.4 7.8 36 95-130 52-88 (203)
341 KOG3097|consensus 21.0 5.2E+02 0.011 21.9 7.4 48 83-130 312-359 (390)
342 PF01733 Nucleoside_tran: Nucl 20.1 34 0.00075 27.9 0.0 127 54-191 5-131 (309)
No 1
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.75 E-value=3.2e-17 Score=141.93 Aligned_cols=134 Identities=17% Similarity=0.152 Sum_probs=107.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWF 75 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~ 75 (235)
++.++++++|+++||+|||+++.++.++++++.++++ ++++++. +++++|++.|++.|..++....+++|++
T Consensus 69 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a-~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~ 147 (490)
T PRK10642 69 IRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIG-LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYS 147 (490)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhC
Confidence 4568999999999999999999999999999999999 9998864 3467799999999999999999999999
Q ss_pred cc-chhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHHHHHHHh-hccCCchh
Q psy6058 76 DK-KRTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQMCICGA-LMKDPEWW 137 (235)
Q Consensus 76 ~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (235)
|+ +||++.++...+..+|..+++.+...+. ..+|||+.|++.+++.++..++.. ..|+|++.
T Consensus 148 p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~ 219 (490)
T PRK10642 148 PDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ 219 (490)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH
Confidence 76 5999999998888888888876654443 357999999986654444333322 33444443
No 2
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.75 E-value=1.3e-17 Score=148.96 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=119.9
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
++++++++++|+++||+|||+++++++++.+++.++.+ ++++++.+ +++|++.|++.|+..+....++++++|++ |+
T Consensus 213 lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~a-fa~s~~~l-lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg 290 (742)
T TIGR01299 213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSS-FVQGYGFF-LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRG 290 (742)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 35678999999999999999999999999999999988 88898866 56699999999999999999999999875 99
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhh-------------CcHHHHHHHHHHHHHHHHH-HhhccCCchhHhhhhhcCC
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEY-------------GWRGTILLLAGTFLQMCIC-GALMKDPEWWIREQKRLQN 146 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~-------------gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 146 (235)
+..+++.+++.+|.++++.++..+...+ +||+.+++.++..++.+++ .+++++|+|+..+++.+++
T Consensus 291 ~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA 370 (742)
T TIGR01299 291 EHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHH
Confidence 9999999999999999998877766533 5888888776655544444 4567888998776665555
Q ss_pred CC
Q psy6058 147 PT 148 (235)
Q Consensus 147 ~~ 148 (235)
.+
T Consensus 371 ~~ 372 (742)
T TIGR01299 371 WM 372 (742)
T ss_pred HH
Confidence 44
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.74 E-value=4.5e-17 Score=141.40 Aligned_cols=139 Identities=18% Similarity=0.114 Sum_probs=113.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
++.++++++|+++||+|||+++.++.++..++.++.+ ++.+ ++.+ ++.|++.|++.|...+....+++|++|
T Consensus 68 g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~-~~~r~l~G~~~g~~~~~~~~~~~e~~p 145 (502)
T TIGR00887 68 GTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG-LSPGSSPKSVMATL-CFWRFWLGVGIGGDYPLSAIITSEFAT 145 (502)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-HccCcccchHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHhcC
Confidence 4678999999999999999999999999999988888 7654 4444 667999999999999999999999998
Q ss_pred cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHh-----------------------hhCcHHHHHHHHHHHHHHHHH-Hhhc
Q psy6058 77 KK-RTLATSLGACGTGIGTFVYAPLTQYWIE-----------------------EYGWRGTILLLAGTFLQMCIC-GALM 131 (235)
Q Consensus 77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~-----------------------~~gw~~~~~~~~~~~~~~~~~-~~~~ 131 (235)
++ ||++.++.+.+..+|..+++.+...+.. .++||+.+.+.++..++..+. .+++
T Consensus 146 ~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lp 225 (502)
T TIGR00887 146 KKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIP 225 (502)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 76 9999999999999999999888765532 247999998766655544443 4567
Q ss_pred cCCchhHhhhhh
Q psy6058 132 KDPEWWIREQKR 143 (235)
Q Consensus 132 ~~~~~~~~~~~~ 143 (235)
|+|+|+..++++
T Consensus 226 ESpr~l~~~~~~ 237 (502)
T TIGR00887 226 ETPRYTADVAKD 237 (502)
T ss_pred CCHHHHHHhCcc
Confidence 889998766554
No 4
>KOG0569|consensus
Probab=99.71 E-value=1e-16 Score=135.84 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=126.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK- 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~- 78 (235)
+.++|+++.++++||+|||..++++.++..++.+++. ++ +++. +++.+|++.|+..|......+.++.|..|++
T Consensus 72 G~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~-~s~~~~~~e-~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~ 149 (485)
T KOG0569|consen 72 GGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMG-LSKSAPSFE-MLILGRLIVGLACGLSTGLVPMYLTEISPKNL 149 (485)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-HHHHhhhHH-HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh
Confidence 5678999999999999999999999998888877776 54 5555 4588899999999999999999999999998
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHH-HHHH-hhhCcHHHHHHHHHHHHHHHHH-HhhccCCchhHh-hhhhcCCCCCCCccc
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLT-QYWI-EEYGWRGTILLLAGTFLQMCIC-GALMKDPEWWIR-EQKRLQNPTPSHSIA 154 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~-~~~~-~~~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 154 (235)
||....+.+.+..+|..++..++ ..+. +...|++.+.+..+..++.++. .+++|+|+|+.. +++++++++ .+
T Consensus 150 RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~----sl 225 (485)
T KOG0569|consen 150 RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARK----AL 225 (485)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHH----HH
Confidence 99999999999999999986664 3333 4557999888877765554444 667899999987 677777777 77
Q ss_pred cccCcCccc
Q psy6058 155 TKSNRNSIA 163 (235)
Q Consensus 155 ~~~~~~~~~ 163 (235)
+.+++.+++
T Consensus 226 ~~y~G~~~~ 234 (485)
T KOG0569|consen 226 KFYRGKEDV 234 (485)
T ss_pred HHHhCCCcc
Confidence 777776654
No 5
>KOG0255|consensus
Probab=99.71 E-value=5.4e-17 Score=141.50 Aligned_cols=142 Identities=15% Similarity=0.113 Sum_probs=123.9
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
.+.++|++++|+++||+|||++++++.++..++.+..+ +++|++.+ ++.|++.|++.+........+++|++++ +|+
T Consensus 129 ~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a-~a~~~~~~-~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~ 206 (521)
T KOG0255|consen 129 LGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA-FAPNYWMF-LIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG 206 (521)
T ss_pred HHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH-HhCcHHHH-HHHHHHHHhhccchhHHhHhhheeecCcchhh
Confidence 46789999999999999999999999999999999999 99999966 6669999999999999999999998755 599
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc-cCCchhHhhhhhcCCCC
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM-KDPEWWIREQKRLQNPT 148 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (235)
.+..+ ......++.+++.+++++.. +||+.+++..+..++.+++.+++ |+|+|+..+++.+++.+
T Consensus 207 ~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~ 272 (521)
T KOG0255|consen 207 LALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIK 272 (521)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHH
Confidence 99999 77788888889999899887 89999999888777776666655 89999888777665554
No 6
>PRK09952 shikimate transporter; Provisional
Probab=99.69 E-value=6.7e-16 Score=131.90 Aligned_cols=119 Identities=22% Similarity=0.249 Sum_probs=101.1
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
..+++++.|+++||+|||++++++.+++++++++++ +++++.. ++++.|++.|++.|..++....++.|++|
T Consensus 77 ~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 155 (438)
T PRK09952 77 RPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIG-LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP 155 (438)
T ss_pred HhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC
Confidence 457788899999999999999999999999999999 8988763 34667999999999999999999999997
Q ss_pred cc-hhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHH
Q psy6058 77 KK-RTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQ 123 (235)
Q Consensus 77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~ 123 (235)
++ |++..+..+.+..+|..+++.+...+. +.+|||..|++.++..++
T Consensus 156 ~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 156 KNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 75 999999999999999988877766654 357999999887665443
No 7
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.69 E-value=7.1e-16 Score=130.74 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=107.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
++.+++++.|++.||+|||+++..+.++..++.++.+ ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus 55 ~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~ 132 (412)
T TIGR02332 55 AYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATM-FATGPESL-YLLRILVGIAEAGFLPGILLYLTFWFPAYFRAR 132 (412)
T ss_pred HHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HhcCHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHH
Confidence 4678899999999999999999999999999999999 89999877 55699999999998888888999999875 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHh------hhCcHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIE------EYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~------~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+.++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++
T Consensus 133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~ 184 (412)
T TIGR02332 133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVM 184 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988864 369999999987766554444
No 8
>KOG2504|consensus
Probab=99.68 E-value=1.7e-16 Score=136.81 Aligned_cols=134 Identities=43% Similarity=0.853 Sum_probs=123.8
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhH
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTL 81 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~ 81 (235)
+++.+..|+.+.+.||+|.|.+.+.|.++..+++++.. +++++|.+++...++.|+|.|+.+.+...++..+|+|+|+.
T Consensus 92 ~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lss-F~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~l 170 (509)
T KOG2504|consen 92 GVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSS-FATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRAL 170 (509)
T ss_pred HHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHH
Confidence 45678899999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhccCCch
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEW 136 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (235)
+.|+...+.++|.++.|.+..++.+.+|||+.+++.+.+.+-.+++...+++...
T Consensus 171 A~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~ 225 (509)
T KOG2504|consen 171 ATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSP 225 (509)
T ss_pred HHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 9999999999999999999999999999999999999888777777766665433
No 9
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.68 E-value=6.2e-16 Score=133.26 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=105.8
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---------chH--HHHHHHHHHHHHhhhhhhhHhHHHH
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---------NSI--EAQYITFGCIAGCGLSLAYVTAVVS 70 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~--~~l~i~~~~l~G~~~g~~~~~~~~~ 70 (235)
.+++++++++|+++||+|||++++++.++.+++.+..+ ++ +++ ...++++|++.|++.|...+....+
T Consensus 66 ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~ 144 (479)
T PRK10077 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSA-WPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMY 144 (479)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-hhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHH
Confidence 34678999999999999999999999999988887776 53 121 2234677999999999999999999
Q ss_pred HHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHHHHHHH-hhccCCchh
Q psy6058 71 IAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQMCICG-ALMKDPEWW 137 (235)
Q Consensus 71 ~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (235)
++|++|++ ||++.++.+.+..+|.++++.++..+. +.+|||+.|++.++..++..+.. +++++|++.
T Consensus 145 i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l 221 (479)
T PRK10077 145 IAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL 221 (479)
T ss_pred HHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence 99999765 999999999999999998877765543 35699999998776555544433 344555554
No 10
>TIGR00898 2A0119 cation transport protein.
Probab=99.68 E-value=2.7e-16 Score=136.49 Aligned_cols=139 Identities=19% Similarity=0.296 Sum_probs=115.2
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
.++++++++.|+++||+|||++++++.++..++.++.+ ++++++.+ ++.|++.|++.+...+....++.|++|++ |+
T Consensus 138 ~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~ 215 (505)
T TIGR00898 138 VGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVF-LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRA 215 (505)
T ss_pred HHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-HcccHHHH-HHHHHHHHhhccchHHHHHHHhheecChhhhH
Confidence 35678999999999999999999999999999999999 89999866 56699999999999999999999998775 99
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH-hhccCCchhHhhhhhcC
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG-ALMKDPEWWIREQKRLQ 145 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 145 (235)
.+.++...+..+|.++++.++..+.+ ||+.+++.++..++..+.. +..++|++...+++.++
T Consensus 216 ~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~ 278 (505)
T TIGR00898 216 IVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEE 278 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHH
Confidence 99999999999999999888766543 9999998887655554443 44567777665544443
No 11
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.68 E-value=9.5e-16 Score=132.91 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=107.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-cc-chh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DK-KRT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~-~rg 80 (235)
.+.++.+++|+++||+|||++++++.++..++.++++ .+++++.+ ++.|++.|+|.+...+.....+.+.+ |+ +|+
T Consensus 53 ~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~-~a~~~~~l-i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~ 130 (495)
T PRK14995 53 VMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA-FSPTASWL-IATRALLAIGAAMIVPATLAGIRATFTEEKQRN 130 (495)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3457789999999999999999999999999999999 99999877 66699999999988887777777665 44 599
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
++.+++.....+|..++|.+++.+.++.|||+.|++...+.++..++.
T Consensus 131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~ 178 (495)
T PRK14995 131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLT 178 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998776655544443
No 12
>PRK03545 putative arabinose transporter; Provisional
Probab=99.67 E-value=1.5e-15 Score=127.75 Aligned_cols=124 Identities=20% Similarity=0.115 Sum_probs=109.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
.+.+++++.|++.||+|||+++..+.++..++++++. ++++++.+ ++.|++.|++.+...+....++.+++|+ +|++
T Consensus 56 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~ 133 (390)
T PRK03545 56 VVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSA-LAWNFTVL-LISRIGIAFAHAIFWSITASLAIRVAPAGKKAQ 133 (390)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhh
Confidence 4567889999999999999999999999999999999 89999977 5569999999988888888999998876 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+.++...+..+|..++|.+++.+.+.+|||+.|++.+++.++..+..
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887665554443
No 13
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.67 E-value=4.3e-16 Score=129.92 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=110.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
...+++++.|+++||+|||+++.++.++..++.++.+ ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus 41 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~ 118 (399)
T TIGR00893 41 GYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA-FAGAYVSL-YILRVLLGAAEAPFFPGIILIVASWFPASERAT 118 (399)
T ss_pred HHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH-HHcCHHHH-HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHH
Confidence 3567899999999999999999999999999999998 88898866 55699999999999999999999999764 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+.++......+|..+++.+.+.+.+..+||+.|++.+++.++..+..+
T Consensus 119 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (399)
T TIGR00893 119 AVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988776655544433
No 14
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.66 E-value=2.4e-15 Score=128.26 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=99.0
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
..++++++|+++||+|||+++.++.+++.++.++.+ +++++.. .+++.|++.|++.|..++....+++|++|
T Consensus 76 ~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p 154 (432)
T PRK10406 76 RPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIA-CLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV 154 (432)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh-hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC
Confidence 348899999999999999999999999999999998 8776531 34667999999999999999999999987
Q ss_pred c-chhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHHH
Q psy6058 77 K-KRTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQM 124 (235)
Q Consensus 77 ~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~~ 124 (235)
+ +||++.++...+...|.++++.+...+. +.+|||+.|++.++..++.
T Consensus 155 ~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 155 EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 6 5999999988888888877776654443 2579999998866655443
No 15
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.66 E-value=8.6e-16 Score=126.65 Aligned_cols=123 Identities=25% Similarity=0.365 Sum_probs=108.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
...+++++.|+++||+|||++++++.++.+++.++.. ++++.+ .++..|++.|++.+...+....++.+++|+ +|++
T Consensus 44 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~ 121 (352)
T PF07690_consen 44 GSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-FASNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGR 121 (352)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-HHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-hhhhHH-HHhhhccccccccccccccccccccccchhhhhhh
Confidence 4578899999999999999999999999999977766 667777 447779999999999999999999999987 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+.++...+..+|..++|.+++.+.+..+||+.|++.+++.++..++
T Consensus 122 ~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 122 AFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 9999999999999999999999998999999999988877776654
No 16
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.66 E-value=1.3e-15 Score=126.60 Aligned_cols=124 Identities=31% Similarity=0.515 Sum_probs=108.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA 82 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~ 82 (235)
.+.+++++.|+++||+|||+++.++.++.+++.++++ ++++++.+ ++.|++.|++.+..++.....+.+++|++|+++
T Consensus 50 ~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (377)
T TIGR00890 50 GLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA-IADSLAAL-YLTYGLASAGVGIAYGIALNTAVKWFPDKRGLA 127 (377)
T ss_pred HHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH-HHHHHHHH-HHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHH
Confidence 4678999999999999999999999999999999999 89999876 555899999999888888888889999899999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
.++...+..+|..+++++.+.+.+..|||+.|++.+++.++..+..
T Consensus 128 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 128 SGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888888888899999998887666555443
No 17
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.66 E-value=2.3e-15 Score=126.88 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=107.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
...+++++.|+++||+|||++++.+.++..++.++.. ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus 67 ~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~ 144 (394)
T PRK10213 67 VAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS-FANSFSLL-LIGRACLGLALGGFWAMSASLTMRLVPPRTVPK 144 (394)
T ss_pred HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH-HHChHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHH
Confidence 3567899999999999999999999999999999998 88999877 55599999999999999999999999765 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC 125 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~ 125 (235)
+.++...+..+|..++|.+++.+.+.+|||+.|++.+++.++..
T Consensus 145 a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 145 ALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998776554433
No 18
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.66 E-value=2.2e-15 Score=127.77 Aligned_cols=123 Identities=12% Similarity=0.088 Sum_probs=106.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
+++++++++|+++||+|||++++.+.++..++.++.. .+++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus 63 ~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~-~a~~~~~l-~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 140 (413)
T PRK15403 63 GGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL-FTTSMTQF-LIARFIQGTSICFIATVGYVTVQEAFGQTKGIK 140 (413)
T ss_pred HHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH-HcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4567899999999999999999999999999999999 89999866 56699999988866666667788888775 899
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+.++...+..+|..++|.+++.+.++.|||+.|++.+++.++..+.
T Consensus 141 ~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 141 LMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998899999999888766555444
No 19
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.66 E-value=2.5e-15 Score=126.68 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=105.6
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA 82 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~ 82 (235)
.+.+++++.|+++||+|||+++..+.++++++.++.+ ++++++.+ +..|++.|++.+...+....++.+++|++|+++
T Consensus 56 ~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~-~a~~~~~l-l~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~ 133 (393)
T PRK09705 56 TMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRE-LYPQSALL-LSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLV 133 (393)
T ss_pred HHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHH-HCcchHHH-HHHHHHHHhHHHHHhhhhhHHHHHHccccchhH
Confidence 4678899999999999999999999999999999999 99999977 566999999999988888889999999889999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFL 122 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~ 122 (235)
++++..+..+|..+++.+++++.++. +||+.+.+.++..+
T Consensus 134 ~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~ 174 (393)
T PRK09705 134 MGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAV 174 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999988875 89998876555443
No 20
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.66 E-value=1.7e-15 Score=129.99 Aligned_cols=127 Identities=35% Similarity=0.783 Sum_probs=109.3
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLAT 83 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~ 83 (235)
..++.++.|+++||+|||++++.+.++..+++++++ ++++++.+++..|++.|++.+...++...++.++++++|+++.
T Consensus 67 ~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~ 145 (455)
T TIGR00892 67 LYAGGPISSILVNRFGCRPVVIAGGLLASLGMILAS-FSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLAN 145 (455)
T ss_pred HHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHH
Confidence 457789999999999999999999999999999988 8888887755557888999887767777788889988899999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
++.+.+..+|..++|.+.+.+.+.+|||+.|++.+++.++..+..++.
T Consensus 146 g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 146 GLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888766555544443
No 21
>KOG1330|consensus
Probab=99.66 E-value=7.5e-18 Score=139.24 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=115.6
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
..+++++|++|+++||+.|++++.+|.+++.++.+..+ ++..+|++ +++|.+.|+|.+...+..+..+++.||. +|+
T Consensus 79 v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~-fs~~Fwq~-~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs 156 (493)
T KOG1330|consen 79 VVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG-FSNHFWQV-LLCRGFVGIGEASYSPIAPSLIADSFPDDKRS 156 (493)
T ss_pred HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH-HHHHHHHH-HHHHHHhccchhhhcccchhHhhhcCcchhhh
Confidence 46789999999999999999999999999999999999 99888866 6669999999999999999999999988 499
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhhc
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~ 131 (235)
++.++++.+..+|..+|...+..+.+..+ |||.|+..+++.+++.++.+++
T Consensus 157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence 99999999999999999999888888776 9999999888777776665443
No 22
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.66 E-value=2.6e-15 Score=124.32 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=106.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
.+++++++.|+++||+|||++++.+.++..++.++.. +.. +++.+ ++.|++.|++.+...+...+++.+++|+
T Consensus 46 ~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 123 (365)
T TIGR00900 46 PYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP-FVALLGGLNIWQV-YVLAGILAIAQAFFTPAYQAMLPDLVPE 123 (365)
T ss_pred HHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH-HHHHcCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4567899999999999999999999998888887777 666 77766 5559999999999999999999999876
Q ss_pred -chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 78 -KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 78 -~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+|+++.++.+.+..+|..++|.+++.+.+..||++.|++.++..++..+..
T Consensus 124 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 124 EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999988776555444443
No 23
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.9e-15 Score=123.65 Aligned_cols=126 Identities=21% Similarity=0.166 Sum_probs=115.1
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
++.+++|+...+.||+.||++++....++.++.++.+ +++|++.+ ++.|++.|++.|..++....+..+..|+ +|++
T Consensus 60 ~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~a-lAp~f~~L-l~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~ 137 (394)
T COG2814 60 GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA-LAPSFAVL-LLARALAGLAHGVFWSIAAALAARLVPPGKRGR 137 (394)
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCccchhh
Confidence 4578999999999999999999999999999999999 99999977 6669999999999999999999998755 6999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
++++...+..++..+|.+++.++.+.+|||+.|++.+.+.++.++..+.
T Consensus 138 Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~ 186 (394)
T COG2814 138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWK 186 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887776666443
No 24
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.65 E-value=3.6e-15 Score=124.54 Aligned_cols=123 Identities=15% Similarity=0.032 Sum_probs=96.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
.+++++++.|+++||+|||+++..+.+....+.+... ..++++.+ ++.|++.|++.+. ..+....+++++|+ +|++
T Consensus 38 g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~ 114 (368)
T TIGR00903 38 AFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL-DPFNYEWL-LACQLLAALGQPF-LLNAFAPAASQIREERRDL 114 (368)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHH
Confidence 4678899999999999999877655555545443333 34677766 6669999999986 45555566887766 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+.++...+..+|..+++.++..+.+++|||+.|++.+++.++..++.
T Consensus 115 a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 115 VISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998777665554443
No 25
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.65 E-value=4.3e-15 Score=124.84 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=105.3
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
...+++++.|+++||+|||++++++.++..++.++.. +.++++.+ +..|++.|++.+..++....++.+++|+ +|++
T Consensus 59 ~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~ 136 (405)
T TIGR00891 59 SRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG-FAPGYITM-FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNK 136 (405)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhH
Confidence 4578899999999999999999999999999999998 88999877 5569999999999999999999998876 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhC--cHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYG--WRGTILLLAGTFLQM 124 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g--w~~~~~~~~~~~~~~ 124 (235)
+.++...+..+|..+++.+.+.+.+..+ ||+.|++.++..++.
T Consensus 137 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 137 ASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888776 999998765544433
No 26
>KOG2532|consensus
Probab=99.65 E-value=2.6e-16 Score=134.15 Aligned_cols=127 Identities=20% Similarity=0.307 Sum_probs=112.8
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR 79 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r 79 (235)
+++++++..|+++||+|.|+++..+.++.++++++.. .+. +++ .+++.|+++|++.|..++....+.++|.|. ||
T Consensus 85 G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P-~aa~~~~~-~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er 162 (466)
T KOG2532|consen 85 GYILGQIPGGYLADKFGARRVFFISGLISALLTLLTP-LAASIGFY-LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER 162 (466)
T ss_pred HHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHH-HHHHhcch-hhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence 5678899999999999999999999999999998887 553 334 336679999999999999999999999876 69
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhh-hCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEE-YGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
++..++...+..+|.+++-++++++.+. +||+++|++.+++.++..++++++
T Consensus 163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 163 STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 999999999999888877776543
No 27
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.64 E-value=7.2e-15 Score=124.85 Aligned_cols=115 Identities=22% Similarity=0.304 Sum_probs=103.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.+.+++++.|+++||+|||++++++.++..++.++.. ++++++.+ ++.|++.|++.+..++....++.+++|++ |++
T Consensus 65 ~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~l-~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~ 142 (426)
T PRK12307 65 GRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG-LASGVIML-TLSRFIVGMGMAGEYACASTYAVESWPKHLKSK 142 (426)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhH
Confidence 4578899999999999999999999999999999999 88998866 55699999999999999999999998775 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG 119 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~ 119 (235)
+.++...+..+|.++++.+.+.+.+.++||+.|++..+
T Consensus 143 ~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 143 ASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 99999999999999999999999888999999987543
No 28
>KOG3764|consensus
Probab=99.63 E-value=6.1e-16 Score=125.73 Aligned_cols=129 Identities=21% Similarity=0.240 Sum_probs=117.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc--hh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK--RT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~--rg 80 (235)
.+.+.+|+.|.+.||+|+|..+++|.+++..++++++ +..+++.+ ++.|.++|+|.+...+...+++++.||++ |+
T Consensus 118 ~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa-fg~sy~~l-~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~ 195 (464)
T KOG3764|consen 118 VQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA-FGNSYPML-FVARSLQGVGSAFADTSGLAMLADVFPEDNERG 195 (464)
T ss_pred HHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH-HcchhHHH-HHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence 3567899999999999999999999999999999999 99999977 45599999999999999999999999874 89
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhccC
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKD 133 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~ 133 (235)
+++|+...+.++|..++|++++++.+..|.+..|.++++++++-..+.+++.+
T Consensus 196 ~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 196 SVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 99999999999999999999999999999999999999988887777665543
No 29
>KOG0254|consensus
Probab=99.63 E-value=2.3e-15 Score=131.08 Aligned_cols=150 Identities=21% Similarity=0.160 Sum_probs=124.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
+..++++++|+++|++|||+.++++.+++.++.++.+ ++++++++ +++|++.|+|.|......+.+++|..|++ ||.
T Consensus 101 ga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~-~a~~~~~l-~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~ 178 (513)
T KOG0254|consen 101 GALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA-LAPSWYQL-IVGRILTGLGVGGASVLAPVYISEIAPAHIRGT 178 (513)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHhccchhhhhhcchhhHhhcCChhhhHH
Confidence 3478999999999999999999999999999999999 99999866 67799999999999999999999999886 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhh--hCcHHHHHHHHHHHHHHHHH-HhhccCCchhHhhhhhcCCCCCCCccccccC
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEE--YGWRGTILLLAGTFLQMCIC-GALMKDPEWWIREQKRLQNPTPSHSIATKSN 158 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~--~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (235)
..+..+....+|..++ .+.+...++ .+||..+.+..+.+++..+. .+.+++|+|+.++++.+++++ .+++..
T Consensus 179 l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~----~l~~l~ 253 (513)
T KOG0254|consen 179 LVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKR----SLKRLR 253 (513)
T ss_pred HHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHH----HHHHHh
Confidence 9999999999888887 444555544 48998888877766555555 344589999988777766666 555555
Q ss_pred c
Q psy6058 159 R 159 (235)
Q Consensus 159 ~ 159 (235)
+
T Consensus 254 g 254 (513)
T KOG0254|consen 254 G 254 (513)
T ss_pred C
Confidence 4
No 30
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.63 E-value=1.8e-14 Score=103.00 Aligned_cols=125 Identities=25% Similarity=0.358 Sum_probs=107.3
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
...+++++.|++.||+|||+.+..+.++..++.+... ..++.+.+ ...+++.|++.+...+....++.+.+|++ |++
T Consensus 10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (141)
T TIGR00880 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA-LSSNITVL-IIARFLQGFGAAFALVAGAALIADIYPPEERGV 87 (141)
T ss_pred HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhH
Confidence 3467889999999999999999999999999988888 77887755 55589999999988888889999998775 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+.++.+....+|..++|.+.+.+.+..+|++.+++.+.+.++..+..+
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA 135 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999887776655555443
No 31
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.63 E-value=4.2e-16 Score=127.80 Aligned_cols=126 Identities=16% Similarity=0.189 Sum_probs=114.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.|.++-++.|.++||.++|..+.+|.++.++.+++++ ++++.+.+ .++-++.|...|..+|++...++.|++++ ||+
T Consensus 76 ~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~G-fs~s~~~~-~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~ 153 (448)
T COG2271 76 TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFG-FSPSLFLF-AVLWVLNGWFQGMGWPPCARTITHWFSRKERGT 153 (448)
T ss_pred HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHh-hhhHHHHH-HHHHHHHHHHhcCCCcHHHHHHHHHcCccccCc
Confidence 4678889999999999999999999999999999999 99988855 66688999999999999999999999875 999
Q ss_pred HHHHHHhhHHHHHHHHHHHH--HHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 82 ATSLGACGTGIGTFVYAPLT--QYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~--~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
..++.+++-++|+++.|++. +++..+.+||..|++.+++++++.++.++
T Consensus 154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 89999999999999999887776666544
No 32
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.63 E-value=2.1e-15 Score=130.08 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=110.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
+..++.++.|+++||+|||++++++.++..++.+++. .+++++.+ ++.|++.|++.+...+....++.+++|+ +|++
T Consensus 49 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~ 126 (485)
T TIGR00711 49 ANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG-VAPNLELM-IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGR 126 (485)
T ss_pred HHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-CcCCHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHH
Confidence 4568899999999999999999999999999999999 89999866 6669999999999999999999999876 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+.+++..+..+|..++|.+++++.++++||+.|++.+.+.++..++.
T Consensus 127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 173 (485)
T TIGR00711 127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVA 173 (485)
T ss_pred HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999998776655554443
No 33
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.63 E-value=6.5e-15 Score=123.60 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=108.3
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.+.+++++.|+++||+|||+++.++.++.+++.++++ ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus 50 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~-~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (382)
T PRK10091 50 GVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT-LSSSYLML-AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTA 127 (382)
T ss_pred HHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH-HhCcHHHH-HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhH
Confidence 4678899999999999999999999999999999999 89999877 45599999999988888888888998774 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+.++...+..+|..++|++++.+.+..+||+.|++.+++.++..+.
T Consensus 128 ~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 128 AVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888765554443
No 34
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.63 E-value=5.7e-15 Score=126.05 Aligned_cols=121 Identities=13% Similarity=0.143 Sum_probs=107.6
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.+.+++++.|+++||+|||+++.++.++..++.++.. ++++++.+ ++.|++.|++.|..++....++.+++|++ |++
T Consensus 70 ~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~ 147 (434)
T PRK11663 70 TYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG-FSSSLWAF-ALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGG 147 (434)
T ss_pred HHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHHHHHHHccchHHHHHHHHhCCHHHHHH
Confidence 4678899999999999999999999999999999998 88998866 55589999999988888889999999874 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC 125 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~ 125 (235)
++++++.+..+|..++|.+.+.+.+.+|||+.|++.+++.++..
T Consensus 148 ~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~ 191 (434)
T PRK11663 148 WWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG 191 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998777554443
No 35
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.61 E-value=3.3e-15 Score=124.23 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=107.3
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.+.+++++.|+++||+|||++++++.++..++.++.. ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus 42 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~ 119 (379)
T TIGR00881 42 AYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG-FSTSLWVM-AALWALNGIFQGMGWPPCGRTVTKWFSRSERGT 119 (379)
T ss_pred HHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHhhccccCCchHHHHHHhcCHhhhee
Confidence 4567899999999999999999999999999999999 88888866 55699999999999999999999998875 999
Q ss_pred HHHHHHhhHHHHHHHHH-HHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 82 ATSLGACGTGIGTFVYA-PLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~-~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+.++...+..+|..++| .+...+.+..+|++.|++.+++.++..+..+
T Consensus 120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 120 WVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred eEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 4666777788999999887776555444433
No 36
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.61 E-value=1.9e-14 Score=121.49 Aligned_cols=123 Identities=17% Similarity=0.128 Sum_probs=106.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
++.+++++.|+++||+|||+++..+.++..++.++.. +.++++.+ ++.|++.|++.+...+....++.+++|+ +|++
T Consensus 62 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 139 (406)
T PRK11551 62 GLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA-QAWDFPSL-LVARLLTGVGLGGALPNLIALTSEAVGPRLRGT 139 (406)
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHH
Confidence 4567899999999999999999999999999888888 88888866 5569999999999889889999999876 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+.++.+.+..+|..+++.++..+.+..+|++.|++.+++.++..+.
T Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888899999998877654444433
No 37
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.61 E-value=7.4e-14 Score=117.58 Aligned_cols=125 Identities=11% Similarity=0.036 Sum_probs=106.3
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.|+++.++.|+++||+|.|+++.++.+.+++..++.. +++++..+ .+.|++.|++.|..+ +...++..|+|++ |++
T Consensus 74 sYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~-fa~Sl~~L-~i~R~llGvaEA~~~-A~~syI~~WfP~kER~r 150 (511)
T TIGR00806 74 SHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL-LGTSVWHM-QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQR 150 (511)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHH
Confidence 4788999999999999999999999999999999999 99898877 566999999999998 8899999999885 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHH---HHHHHHHHHHHhhc
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLL---AGTFLQMCICGALM 131 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~---~~~~~~~~~~~~~~ 131 (235)
+.++..++..+|.++++++++. +..+|||+.+.+. ....++.++..+++
T Consensus 151 atsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 151 AAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999 6678999766442 23334444444444
No 38
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.61 E-value=1.3e-14 Score=121.26 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=109.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
...+++++.|+++||+|||+++..+.++..++.+... ..++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus 52 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (385)
T TIGR00710 52 GFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA-LSNNIETL-LVLRFVQAFGASAGSVISQALVRDIYPGEELSR 129 (385)
T ss_pred HHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHH
Confidence 3567899999999999999999999999999999998 88888866 55699999999999999999999998775 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+.++.+....+|..++|.+++.+.+..+|++.+++.+++.++..+..
T Consensus 130 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 176 (385)
T TIGR00710 130 IYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALI 176 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777655554443
No 39
>PRK15075 citrate-proton symporter; Provisional
Probab=99.61 E-value=2.9e-14 Score=121.70 Aligned_cols=114 Identities=19% Similarity=0.162 Sum_probs=96.6
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
.+++++.|+++||+|||++++.+.++..++.++++ ++++++. ++++.|++.|++.+...+....+++|++|+
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 148 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIA-FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP 148 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence 35788999999999999999999999999999999 8888763 236679999999999888888999999977
Q ss_pred c-hhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHH
Q psy6058 78 K-RTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAG 119 (235)
Q Consensus 78 ~-rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~ 119 (235)
+ |++++++...+..+|..+++.+++.+. +.+|||+.|++.+.
T Consensus 149 ~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 149 GRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 5 999999998888888887777766653 46899999987443
No 40
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.60 E-value=1.7e-18 Score=148.21 Aligned_cols=151 Identities=18% Similarity=0.203 Sum_probs=124.4
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN---SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK- 77 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~- 77 (235)
.+..+|++++|+++||+|||+.++++.++..++.++.+ +++ +++.+ .+.|++.|++.|...+....++.|..|+
T Consensus 57 ~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~-~~~R~~~G~~~g~~~~~~~~~~~E~~~~~ 134 (451)
T PF00083_consen 57 IGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA-FAPSYNNFWML-LIGRFLIGFGIGGAYVVSPIYISEIAPPK 134 (451)
T ss_pred hhhccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccccccccccccc
Confidence 45689999999999999999999999999999999999 888 88766 6669999999999999999999998766
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhh---hCcHHHHHHHHHHHHHHHHH-HhhccCCchhHhhhhhcCCCCCCCcc
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEE---YGWRGTILLLAGTFLQMCIC-GALMKDPEWWIREQKRLQNPTPSHSI 153 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~---~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (235)
+|+...++.+.++.+|..++..+...+... .+||..+.+.++..++..+. .+++|+|+|+..+++.+++++ .
T Consensus 135 ~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~----~ 210 (451)
T PF00083_consen 135 HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEK----V 210 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccc----c
Confidence 499999999999999988887775544332 45999998877765444333 567799999998888887777 5
Q ss_pred ccccC
Q psy6058 154 ATKSN 158 (235)
Q Consensus 154 ~~~~~ 158 (235)
+++.+
T Consensus 211 l~~~~ 215 (451)
T PF00083_consen 211 LRKLR 215 (451)
T ss_pred ccccc
Confidence 55544
No 41
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.60 E-value=2.7e-14 Score=119.31 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=108.3
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
...++.+++|+++||+|||+++..+.++..++.+++. +.++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus 38 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (377)
T PRK11102 38 GFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA-LAQTIDQL-IYMRFLHGLAAAAASVVINALMRDMFPKEEFSR 115 (377)
T ss_pred HHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3567899999999999999999999999999999998 88888866 55699999999988888889999998775 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+.++.+.+..+|..++|.+++.+.+..+|++.|++.+++.++..++
T Consensus 116 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 116 MMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877766555444
No 42
>PRK03699 putative transporter; Provisional
Probab=99.59 E-value=3e-14 Score=120.06 Aligned_cols=125 Identities=9% Similarity=0.049 Sum_probs=106.1
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
++.+++++.|++.||+|||+++..+.++..++.++.. ++++++.+ ++.|++.|++.+...+....++.+++|++ |+.
T Consensus 54 ~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~-~~~~~~~~-~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~ 131 (394)
T PRK03699 54 GILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLM-FSHSLALF-SIAMFVLGVVSGITMSIGTFLITHVYEGKQRGS 131 (394)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HcchHHHH-HHHHHHHHHhhHhhccchhHHhhhhcccchHHH
Confidence 4678899999999999999999999999999999998 88888866 56699999999988888888899988775 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+.+..+....+|+.++|.+.+.+.. ..|||+.|.+.+++.++..++.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999888889999999999888765 57999999987776655544433
No 43
>TIGR00895 2A0115 benzoate transport.
Probab=99.59 E-value=5.9e-15 Score=123.59 Aligned_cols=120 Identities=20% Similarity=0.247 Sum_probs=105.8
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.+.+++++.|+++||+|||+.+..+.++..++.++.. ..++++.+ ++.+++.|++.+...+....++.+++|++ |++
T Consensus 64 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~ 141 (398)
T TIGR00895 64 GMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCA-LATNVTQL-LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGT 141 (398)
T ss_pred HHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HccchHHH-HHHHHHHhcccccchhhHHHHHHHHcCHHhhch
Confidence 4568899999999999999999999999999998888 88888866 55699999999999999999999999875 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~ 124 (235)
+.++...+..+|..+++.+.+.+.+..||++.+++.+++.++.
T Consensus 142 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 142 AVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLL 184 (398)
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHH
Confidence 9999999999999999999999999999999998876444333
No 44
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.59 E-value=2.6e-14 Score=120.19 Aligned_cols=124 Identities=17% Similarity=0.147 Sum_probs=107.0
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
.+.+++++.|+++||+|||+.++.+.++..++.++.. .+++.+.+ ++.|++.|++.+..++....++.+++|+ +|++
T Consensus 50 ~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~ 127 (392)
T PRK10473 50 GMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS-LAETSSLF-LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAK 127 (392)
T ss_pred HHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH-HhCcHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHH
Confidence 3467789999999999999999999999999999888 88888766 5569999999998888888999998876 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+.++.+....+|..++|.+++.+.+..+|++.|++.+++.++..++.
T Consensus 128 ~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 128 VLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888999999998877655554443
No 45
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.58 E-value=1.6e-14 Score=123.62 Aligned_cols=124 Identities=19% Similarity=0.139 Sum_probs=102.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-c
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN---SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-K 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~ 78 (235)
++.++++++|+++||+|||++++++.++..++.++.. ... +++.+ ++.|++.|++.+...+....++.+++|+ +
T Consensus 83 ~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~ 160 (481)
T TIGR00879 83 GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG-LAAFALSVEML-IVGRVLLGIGVGIASALVPMYLSEIAPKAL 160 (481)
T ss_pred HHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHH-HhccccchHHH-HHHHHHHHhhhhHHHhHHHHHHHccCChhh
Confidence 4578999999999999999999999999999988886 443 33344 6669999999999999999999999876 4
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHH---HHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLT---QYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~---~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
|+++.++++.+..+|.++++.++ ....+..+||+.|++.++..++..+..
T Consensus 161 r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 161 RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL 213 (481)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 555567899999998665544444433
No 46
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.58 E-value=6.3e-15 Score=126.75 Aligned_cols=125 Identities=16% Similarity=0.266 Sum_probs=107.1
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR 79 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r 79 (235)
.+.+++++.|+++||+|+|+++.++.++.+++.++.. ++ .+++.+ ++.|++.|++.+...+....++.+++|+ +|
T Consensus 88 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r 165 (465)
T TIGR00894 88 GQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIP-WAAGGGIALV-VFCRVIQGLAQGSVSPATHKIIVKWAPPKER 165 (465)
T ss_pred HHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHH-HHHHcCchHH-HHHHHHHHHhcccchhhHHHHHHhcCCHHHH
Confidence 4678899999999999999999999999888887765 43 445544 6669999999999999999999999986 59
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHHHHHHHHh
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+++.++...+..+|.++++.+.+.+.+.+ |||+.|++.+++.++..++++
T Consensus 166 ~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 166 SRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999884 999999998877665555543
No 47
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.58 E-value=4.9e-14 Score=117.77 Aligned_cols=121 Identities=22% Similarity=0.232 Sum_probs=100.7
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
.+++++.|+++||+|||++++++.++..++.++.. +++++.. ++++.|++.|++.+...+....++.+++|+
T Consensus 49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~ 127 (394)
T TIGR00883 49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG-LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP 127 (394)
T ss_pred hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh-hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc
Confidence 46889999999999999999999999999999998 8877642 346669999999999889999999999866
Q ss_pred -chhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHHHHH
Q psy6058 78 -KRTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQMCI 126 (235)
Q Consensus 78 -~rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~~~~ 126 (235)
+|++..++...+..+|..+++.+...+. +.++||+.|++.+++.++...
T Consensus 128 ~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 128 GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 5999999999999999999988876653 357899999876665544433
No 48
>PRK10504 putative transporter; Provisional
Probab=99.58 E-value=4.6e-14 Score=121.52 Aligned_cols=124 Identities=12% Similarity=0.170 Sum_probs=107.6
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
...++.+++|+++||+|||++++.+.++..++.++.. ++++.+.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus 57 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (471)
T PRK10504 57 TVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA-LSGTLNEL-LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMA 134 (471)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HhCCHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHH
Confidence 3467899999999999999999999999999888888 88888866 56699999999999888888999998875 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+.++......+|..++|.+++.+.++.|||+.|++...+..+..+..
T Consensus 135 ~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~ 181 (471)
T PRK10504 135 AMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIAT 181 (471)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998776555444443
No 49
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.58 E-value=5.9e-14 Score=118.65 Aligned_cols=124 Identities=19% Similarity=0.151 Sum_probs=106.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.+.+++++.|+++||+|||++++++.++..++.++.. .+++++.+ +..|++.|++.+...+....++.+.+|++ |++
T Consensus 60 ~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (406)
T PRK15402 60 GGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAIL-LAQSIEQF-TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIK 137 (406)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHH
Confidence 4567889999999999999999999999999998888 88888866 55699999998888888888889988775 888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+.++......+|..++|.+++.+.+..+||+.|++.+++.++..+..
T Consensus 138 ~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK15402 138 ITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 89998888888999999999999998999999988777665554443
No 50
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.57 E-value=1e-13 Score=120.05 Aligned_cols=115 Identities=18% Similarity=0.274 Sum_probs=103.0
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.+++++++.|+++||+|||+.++++.++..++.++.. +.++++.+ ++.|++.|++.+..++....++.+++|++ |++
T Consensus 67 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~ 144 (496)
T PRK03893 67 SRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG-FAPGYWTL-FIARLVIGMGMAGEYGSSATYVIESWPKHLRNK 144 (496)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 4567889999999999999999999999999999998 88888866 55699999999998999999999988775 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG 119 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~ 119 (235)
+.++...+..+|..++|.+.+.+.+.++||+.|++..+
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL 182 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999886443
No 51
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.56 E-value=1.3e-13 Score=116.60 Aligned_cols=120 Identities=19% Similarity=0.189 Sum_probs=103.8
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLAT 83 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~ 83 (235)
.+.++++|+++||+|||+++.++.++..++.+.+. ..++++.+ +..|++.|++.+...+...+++.+++|+ +|+++.
T Consensus 60 ~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~ 137 (400)
T PRK11646 60 QGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA-IAHEPWLL-WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFF 137 (400)
T ss_pred HHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45578999999999999999999999999999998 88888866 5559999999888888888889998866 599999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
++......+|..++|.+++.+. .+||++.|++.++..++..++
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 789999999877665544433
No 52
>KOG2533|consensus
Probab=99.55 E-value=7.6e-15 Score=125.71 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=109.9
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
++|+++.++++.+.||++..+.+....+++.+-.++.. ..+|++.+ ++.|++.|+..+..+|....+++.|+.+ +|+
T Consensus 92 v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~-~~~s~~~~-ialr~llGl~es~~wP~~~~~lg~wy~~~e~g 169 (495)
T KOG2533|consen 92 VGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTA-AVHSFPGL-IALRFLLGLFESGGWPGVVAILGNWYGKSERG 169 (495)
T ss_pred HHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHH-HHhhhHHH-HHHHHHHHHHhcccchHHHHHHHhhcChhhhh
Confidence 57889999999999999988888777777777777777 78899866 7779999999999999999999999977 599
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH------hhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWI------EEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~------~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
..++++.+...+|+++|+.++..+. ...||||.|++.+++.+...++.++
T Consensus 170 ~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 170 LRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred hhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence 9999999999999999999988864 3469999999999887777666443
No 53
>PRK11043 putative transporter; Provisional
Probab=99.55 E-value=1.1e-13 Score=116.68 Aligned_cols=125 Identities=12% Similarity=0.093 Sum_probs=106.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.+.++++++|+++||+|||+.+..+.++..++.++.. +.++++.+ ++.|++.|++.+...+.....+.+++|++ ++.
T Consensus 53 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (401)
T PRK11043 53 GFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML-WVESAAQL-LVLRFVQAVGVCSAAVIWQALVIDRYPAQKANR 130 (401)
T ss_pred HHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH-HhcCHHHH-HHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHH
Confidence 4578999999999999999999999999999998888 88888866 55599999988877777778888988775 788
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
..+.......+|..++|.+++++.+.+|||+.|++.+++.++..+..+
T Consensus 131 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 178 (401)
T PRK11043 131 VFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL 178 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999988776665554443
No 54
>KOG2615|consensus
Probab=99.55 E-value=2.2e-14 Score=116.22 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=90.8
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
+++++.++.+|.++||+|||+++++|.+..+++.++.+ .+.|+ ..+++.|++.|+.-|. ....-++++|..++ +|+
T Consensus 79 ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~-~S~~F-~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~r~ 155 (451)
T KOG2615|consen 79 ILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWA-LSRNF-AAFVLARFLGGIFKGN-LSVIRAIISDVVSEKYRP 155 (451)
T ss_pred HHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhhhhccCc-hHHHHHHHHhhcChhhcc
Confidence 46789999999999999999999999999999999999 99999 4556679999997765 46677899998755 599
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIE 106 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~ 106 (235)
.+++...+++++|..+||.+++++.+
T Consensus 156 l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 156 LGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred ceeeeeehhhhcchhhcchhhhHHHh
Confidence 99999999999999999999999987
No 55
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.55 E-value=1.1e-13 Score=116.51 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=104.3
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
.+.++++++|+++||+|||++++++.++..++.++.. ..++++.+ ++.|++.|++.+...+....+..+.+++ +++.
T Consensus 55 ~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK11652 55 TYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL-FAHSLTVL-IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRH 132 (394)
T ss_pred HHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHH
Confidence 4578899999999999999999999999999999888 88888866 5569999998887777777777887765 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCI 126 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~ 126 (235)
+.++...+..++..++|.+++.+.+..|||+.|++.+++.++..+
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999989999999987765544433
No 56
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.55 E-value=5.8e-14 Score=121.39 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=100.0
Q ss_pred ccchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc---h
Q psy6058 4 PLLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK---R 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~---r 79 (235)
..+..+++|+++|| +|||++++++.+++.++.+++. ++.+...++.+.+++.|+|.|...+...+.+++.+|++ |
T Consensus 63 ~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~-~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~ 141 (489)
T PRK10207 63 VYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG-MSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRL 141 (489)
T ss_pred HHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhh
Confidence 34567799999999 9999999999999999999998 77664444445689999999999999999999988653 4
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHH
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~ 120 (235)
+.+.++++.+.++|.+++|.+++++.+++|||+.|++.++.
T Consensus 142 ~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 142 DGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 67899999999999999999999999999999999886543
No 57
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.54 E-value=1e-13 Score=113.97 Aligned_cols=123 Identities=28% Similarity=0.347 Sum_probs=109.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
...+++++.|+++||+|||+.+.++.++..++.++.. ..++++.+ +..|++.|++.+...+....++.+++|+ +|++
T Consensus 46 ~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (352)
T cd06174 46 GYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA-FASSLWLL-LVGRFLLGLGGGALYPAAAALIAEWFPPKERGR 123 (352)
T ss_pred HHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHcccccccHhHHHHHHHhCCccchhh
Confidence 4568899999999999999999999999999999998 88888866 5569999999999999999999999987 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
..++......+|..++|.+++.+.+..+|++.+++.+++.++..+.
T Consensus 124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (352)
T cd06174 124 ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169 (352)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877765554443
No 58
>PTZ00207 hypothetical protein; Provisional
Probab=99.54 E-value=1.4e-13 Score=120.07 Aligned_cols=126 Identities=19% Similarity=0.180 Sum_probs=101.5
Q ss_pred chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccch
Q psy6058 6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKR 79 (235)
Q Consensus 6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~r 79 (235)
+++++.|+++||+|+|++++++.+++.++.++++ ++ .+++.+ .+.|++.|+|.+..++.....+.+|||++|
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~a-la~~~~i~~s~~~l-~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~R 153 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFA-LTFQEVIEGSVVRL-SVYNGLMTLGCMLFDLGAVVTVLSVFPSNR 153 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHhcccccCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 4566789999999999999999999999999998 76 577766 555999999999888888888899999999
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH-hhccCC
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG-ALMKDP 134 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~-~~~~~~ 134 (235)
|++.|+...+.++|+++.+.+...+.. .+|+..|++.+++.+++.+++ ++.+.|
T Consensus 154 G~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p 208 (591)
T PTZ00207 154 GAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence 999999999999999865555444443 468888888887665555553 344444
No 59
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.53 E-value=2.1e-13 Score=118.21 Aligned_cols=150 Identities=14% Similarity=0.049 Sum_probs=97.4
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHH-HHH-hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVL-SAT-VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
..++.+++|+++||+|||++++++.++..++.+. ... .+++...+ ++.+++.|++.+........++.+.+|++ |+
T Consensus 299 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg 377 (490)
T PRK10642 299 MLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI-FAGLLMLAVILNCFTGVMASTLPAMFPTHIRY 377 (490)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCccch
Confidence 4567788999999999999988887654433322 220 23344434 45577778777766677777888888887 99
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHH-hhccCCchhHhh-----hhhcCCCCCCCcc
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICG-ALMKDPEWWIRE-----QKRLQNPTPSHSI 153 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~ 153 (235)
++.++.+....+++.++|.+.+++.+..+ |+..+++..+..++.++.. +++|+|++..++ ++.+++++ .
T Consensus 378 ~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~----~ 453 (490)
T PRK10642 378 SALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKE----I 453 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHH----H
Confidence 99997444455667889999999887654 6666655554444443333 345666665433 44444444 5
Q ss_pred ccccC
Q psy6058 154 ATKSN 158 (235)
Q Consensus 154 ~~~~~ 158 (235)
+++.+
T Consensus 454 l~~~~ 458 (490)
T PRK10642 454 LVEHY 458 (490)
T ss_pred hhccc
Confidence 55554
No 60
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.53 E-value=1.2e-13 Score=116.37 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=96.6
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.+.++++++|+++||+|||++++++.++..++.+++. ...+. +..|++.|++.+...+...+++.+++|++ |++
T Consensus 50 ~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~-~~~~~----~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~ 124 (393)
T PRK11195 50 AYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML-FGIHP----LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVK 124 (393)
T ss_pred HHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 4578899999999999999999999999988887776 65553 34589999999999999999999999875 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFL 122 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~ 122 (235)
++++......+|..+||.+++.+.+. .|+..+.+.+.+.+
T Consensus 125 a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 125 ANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999885 47766666554433
No 61
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.53 E-value=2.1e-13 Score=113.38 Aligned_cols=116 Identities=20% Similarity=0.262 Sum_probs=93.6
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
++++++++.|+++||+|||+.++++.++..++.+++. +++ +++.+ ++.|++.|++.+ .++....++++++|+ +|+
T Consensus 49 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~-~~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~ 125 (366)
T TIGR00886 49 AGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG-LAVQSYSVL-LLLRLFIGIAGG-SFASCMPWISFFFPKKIQG 125 (366)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHhhhHHHH-HHHHHHHHHhch-hhHhHHHHHHHhcCHhhhh
Confidence 4678999999999999999999999999999999998 888 88866 556999999865 456677888898876 599
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh----------hhCcHHHHHH-HHHHH
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIE----------EYGWRGTILL-LAGTF 121 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~----------~~gw~~~~~~-~~~~~ 121 (235)
++.++...+..+|..+++.+++.+.. +.+||+.|++ .+++.
T Consensus 126 ~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 126 TALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL 177 (366)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence 99999987778888777777766554 2489999844 34433
No 62
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.53 E-value=2.5e-13 Score=117.28 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=97.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
++.+++++.|+++||+|||+++.++.++.+++.++.+ ++++++.+ ++.|++.|++.+.. .+...++++++|+ +||+
T Consensus 83 ~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~-~~~s~~~l-~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~ 159 (476)
T PLN00028 83 GSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMS-LVSSATGF-IAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGT 159 (476)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HhcCHHHH-HHHHHHHHHHHHhh-HHHHHHHHHhcChhheeH
Confidence 4567889999999999999999999999999998888 88888866 45599999988754 4455678899976 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH----h-----hhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWI----E-----EYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~----~-----~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+.++......+|..+++.+.+.+. + ..|||+.|++.+++.++..+..+
T Consensus 160 a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 160 ANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999988777777777766654442 2 25899999998887665555543
No 63
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.52 E-value=2.9e-13 Score=114.26 Aligned_cols=122 Identities=17% Similarity=0.171 Sum_probs=101.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
.+.+++++.|+++||+|||++++.+.++..++.++.. ..++++.+ ++.|++.|++.+ ..+....++.+.+|+ +|++
T Consensus 66 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 142 (408)
T PRK09874 66 FSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMG-LAQNIWQF-LILRALLGLLGG-FVPNANALIATQVPRNKSGW 142 (408)
T ss_pred HHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhH
Confidence 3467889999999999999999999999999988888 88888866 556999998755 456666777777765 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+.++......+|..++|.+.+.+.+..+|++.|++.+++.++..+.
T Consensus 143 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 188 (408)
T PRK09874 143 ALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV 188 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887765554444
No 64
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.52 E-value=3.2e-14 Score=122.51 Aligned_cols=125 Identities=11% Similarity=0.043 Sum_probs=102.8
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV-----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
.+.+++++.|+++||+|||+++.++.++++++.++.+ . +++++.+ ++.|++.|++.+...+....++++++|+
T Consensus 76 ~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 153 (467)
T PRK09556 76 TYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFG-ASLGSGSVSLGLM-IALWALSGFFQSTGGPCSYSTITRWTPR 153 (467)
T ss_pred HHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHH-HHHhcccchHHHH-HHHHHHHHHHHhccchHHHHHHHHHcCc
Confidence 4678899999999999999999988888777776665 4 4778766 5569999999999999999999999987
Q ss_pred c-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhh---CcHHHHHHHHHHHHHHHHHHh
Q psy6058 78 K-RTLATSLGACGTGIGTFVYAPLTQYWIEEY---GWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 78 ~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~---gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+ ||+++|++..+..+|.++++.+..++.... +|+..|.+.+++.++..+..+
T Consensus 154 ~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 154 RKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred cceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence 4 999999999999999999999887776653 699988887766555544433
No 65
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.52 E-value=1.3e-13 Score=116.26 Aligned_cols=118 Identities=21% Similarity=0.087 Sum_probs=96.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---c-----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---N-----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYW 74 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~-----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~ 74 (235)
.+++++++.|+++||+|||++++.+.++..++.+... ++ + +++.+ ++.|++.|++.+...+....++.++
T Consensus 63 ~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~~~~~ 140 (399)
T PRK05122 63 ATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL-LAGLLAAWPVLSLLLL-LLGRLLLGIGESLAGTGSILWGIGR 140 (399)
T ss_pred HHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH-HhhhhhccchhHHHHH-HHHHHHHHhhHHhhcchHHHHHHhh
Confidence 4578899999999999999999999988877665544 32 2 34434 5669999999999888888888887
Q ss_pred ccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHH
Q psy6058 75 FDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFL 122 (235)
Q Consensus 75 ~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~ 122 (235)
.|+ +|+++.++...+..+|..+++.+++.+.+.+||++.+++.+++.+
T Consensus 141 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 141 VGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred cChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 765 599999999999999999999999999999999998876555443
No 66
>PRK12382 putative transporter; Provisional
Probab=99.51 E-value=3.3e-13 Score=113.53 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=93.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--h-----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--V-----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF 75 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~-----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~ 75 (235)
.+.++++++|+++||+|||++++.+.+...++.+.... . ..+++.+ ++.|++.|++.+...+....++.+++
T Consensus 63 ~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~~~~~~ 141 (392)
T PRK12382 63 ATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALL-VVGRLILGFGESQLLTGALTWGLGLV 141 (392)
T ss_pred HHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45678999999999999999999988877666543220 1 2355545 56699999999988888888888887
Q ss_pred cc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058 76 DK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG 119 (235)
Q Consensus 76 ~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~ 119 (235)
|+ +|++++++...+..+|..++|.+++.+.+.+||++.+.+..+
T Consensus 142 ~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~ 186 (392)
T PRK12382 142 GPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMV 186 (392)
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 65 599999999999999999999999999999999987665443
No 67
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.50 E-value=2.4e-13 Score=117.31 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=105.3
Q ss_pred cccchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc----
Q psy6058 3 VPLLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK---- 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~---- 77 (235)
.+.++++++|+++|| +|||++++++.++.+++.++.+ ++++.+.+ ...+++.|+|.|...+.....+++++|+
T Consensus 60 ~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~-~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~ 137 (475)
T TIGR00924 60 LVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA-MSIYPDLI-FYGLGTIAVGSGLFKANPSSMVGKLYERGDMP 137 (475)
T ss_pred HHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-hcccHhHH-HHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence 457889999999999 8999999999999999999998 88777655 4458889999999889999999998864
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+|+++.++++.+.++|.+++|.+++++.+++||++.|++.++..++..+.
T Consensus 138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 138 RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 28889999999999999999999999999999999999877554444333
No 68
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.50 E-value=4.1e-13 Score=113.80 Aligned_cols=124 Identities=15% Similarity=0.053 Sum_probs=102.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV---ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK- 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~- 78 (235)
.+.+++++.|++.||+|||++++++.++++++.+++. . .++++.+ +..|++.|+|.|...+....++.+..|++
T Consensus 50 g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~-~~~~~~~~~~~-l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~ 127 (410)
T TIGR00885 50 GYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW-PAAEIMNYTLF-LVGLFILTAGLGFLETAANPYILVMGPEST 127 (410)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHhhccHHHH-HHHHHHHHhhHHHHHhhhhHHHHHHCCHhH
Confidence 5678899999999999999999999999999988865 3 3567655 66699999999999999999998887664
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHh--------------------------hhCcHHHHHHHHHHHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIE--------------------------EYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~--------------------------~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
|++..++.+.+..+|..++|.+.+.+.. ..+||++|++.+++.++..++.
T Consensus 128 ~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 128 ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887742 2469999988887655544443
No 69
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.48 E-value=5.1e-13 Score=114.15 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=100.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK- 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~- 77 (235)
+..+++++.|+++||+|||+++.++.++.+++.++.. .. .+++.+ .+.|++.|++.+..++.....+.+++|+
T Consensus 73 ~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~l~g~~~g~~~~~~~~~i~~~~~~~ 150 (438)
T TIGR00712 73 AYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG-FVPWATSSIAIM-FVLLFLNGWFQGMGWPPCGRTMVHWWSQS 150 (438)
T ss_pred HHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHh-ccccccchHHHH-HHHHHHHHHHhhcchHHHHHHHHHhcCcc
Confidence 4568899999999999999999999999888888776 54 345444 4558999999998888888888999976
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHHHHHHHH
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+|++++++++.+..+|+.+++.+.+...+ ..+||+.|++.+++.++..+.
T Consensus 151 ~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~ 201 (438)
T TIGR00712 151 ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF 201 (438)
T ss_pred cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999888776544 569999999888766554444
No 70
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.48 E-value=6.1e-13 Score=114.13 Aligned_cols=123 Identities=13% Similarity=0.134 Sum_probs=96.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
.+++++++.|+++||+|||++++++.++.+++.++++ +.+ +++.+ +..|++.|++.+..++.....+.+++|++
T Consensus 75 ~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~~~~l~gi~~g~~~~~~~~~~~~~~~~~ 152 (452)
T PRK11273 75 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVM-FVLLFLCGWFQGMGWPPCGRTMVHWWSQK 152 (452)
T ss_pred HHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHH-hhhcccccHHHH-HHHHHHHHHHHhccchHHHHHHHHhCChH
Confidence 4678999999999999999999999999998888887 543 55544 55589999999888887778888888775
Q ss_pred -hhHHHHHHHhhHHHHHHH-HHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 79 -RTLATSLGACGTGIGTFV-YAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 79 -rg~~~~~~~~~~~~g~~l-~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
|+++.++++.+..+|..+ +|.+...+....+||+.|++.+++.++..++
T Consensus 153 ~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l 203 (452)
T PRK11273 153 ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF 203 (452)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999988755 4444333434459999999877765554333
No 71
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.48 E-value=1.3e-12 Score=117.29 Aligned_cols=125 Identities=15% Similarity=0.049 Sum_probs=101.6
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
+..++.+++|+++||+|||++++++.++.++++++.+ +.++...+ ++.+++.|++.+..++....+++|++|.+ |++
T Consensus 607 ~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~-~~~s~~~l-l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgt 684 (742)
T TIGR01299 607 AVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS-FGNSESAM-IALLCLFGGLSIAAWNALDVLTVELYPSDKRAT 684 (742)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3467889999999999999999999999999998888 77776655 44477778888888888889999999886 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
++|+..+...+|.+++|.+++.+.+. +...+|++.+++.++..++.++
T Consensus 685 a~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~ 732 (742)
T TIGR01299 685 AFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK 732 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888764 4556666666655554444443
No 72
>PRK10054 putative transporter; Provisional
Probab=99.48 E-value=7.6e-13 Score=111.67 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=100.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
.+.+++++.|+++||+|||++++++.++..++.++.. +.++++.+ ++.+.+.|.+.+...+....+..+..|+ +|++
T Consensus 55 ~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (395)
T PRK10054 55 IGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP-LVNNVTLV-VLFFALINCAYSVFSTVLKAWFADNLSSTSKTK 132 (395)
T ss_pred HHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHH
Confidence 3567889999999999999999999999999988888 88888755 4457777777776677777888887766 4999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+.++......+|.+++|.+++.+.+ .+|+..|++.+++.++..++
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~ 177 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVF 177 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 79999999877665554433
No 73
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.47 E-value=3.2e-13 Score=117.44 Aligned_cols=130 Identities=18% Similarity=0.255 Sum_probs=102.7
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
..++.++.|+++|.||||++++++.++..+|.++.+ .++|...+ +++..+.|+|.|.... ....++|..|.+ |+..
T Consensus 91 ~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a-tA~~~~~~-iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~ 167 (599)
T PF06609_consen 91 SAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA-TAQNMNTF-IAGMVLYGVGAGVQEL-AALAISELVPNKWRGLG 167 (599)
T ss_pred HHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh-cCCcHHHH-HHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhH
Confidence 467889999999999999999999999999999999 99999866 7778999999877654 345578888776 8888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH-HhhccCCch
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC-GALMKDPEW 136 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~ 136 (235)
.++......+....++.++..+..+.+|||.|++.+++..+.++. .+++++|++
T Consensus 168 ~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~ 222 (599)
T PF06609_consen 168 LAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPR 222 (599)
T ss_pred hHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 777776666666677777777766779999999988765555444 445555554
No 74
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.47 E-value=1.2e-12 Score=109.18 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=94.5
Q ss_pred ccchhhhhHHHhhhhchhHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTIL-GGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
..+.+++.|+++||+|||+.++. +.++..++.++.. ++++++.+ ++.|++.|.+.+...+....+..++.|++ |+.
T Consensus 46 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~ 123 (375)
T TIGR00899 46 GIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA-WNRNYFLL-LVLGVLLSSFASTANPQLFALAREHADRTGREA 123 (375)
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH-hcchHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhh
Confidence 45678999999999999887654 5555566777777 88888866 44588888777666777777777877654 554
Q ss_pred H--HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 A--TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~--~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+ .+....+..+|..++|.+++.+.+.+|||+.|++.+++.++..+..
T Consensus 124 ~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~ 172 (375)
T TIGR00899 124 VMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLV 172 (375)
T ss_pred HHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3 5777888899999999999999999999999999887655554443
No 75
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.46 E-value=1.5e-12 Score=110.72 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=95.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
.+.++.++.|++.||+|.|+++.++.++..+.++..+ ++ ++++.+ ++.|++.|++ +..++.....+++|||+
T Consensus 82 ~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~-~a~~~~~~s~~~l-li~r~l~Gig-g~~f~~~~~~vs~wfp~ 158 (462)
T PRK15034 82 SGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLG-IAVQNPNTPFGIF-IVIALLCGFA-GANFASSMGNISFFFPK 158 (462)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHH-HHHHHHHHHH-HHhHHHHHHHHHHHCCH
Confidence 3456778889999999999999999999999999888 76 788866 5559999997 67889999999999988
Q ss_pred c-hhHHHHHHHhhHHHHHHHHHHHHHHHH-----h-------------hhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 78 K-RTLATSLGACGTGIGTFVYAPLTQYWI-----E-------------EYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 78 ~-rg~~~~~~~~~~~~g~~l~~~~~~~~~-----~-------------~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
+ ||++.|+......+|..+++.+...+. . ..+|+.++++..++.++..++.++
T Consensus 159 ~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 159 AKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 999999997666667666555544432 2 234777777777666555555443
No 76
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.44 E-value=1.7e-12 Score=112.70 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=96.3
Q ss_pred hhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc---hhHH
Q psy6058 7 LGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK---RTLA 82 (235)
Q Consensus 7 ~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~---rg~~ 82 (235)
..+++|+++|| +|||+.++++.++..++.+++. ++++...++.+.+++.|++.|...+....++.+++|++ |..+
T Consensus 73 ~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~-~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~ 151 (500)
T PRK09584 73 LVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVA-WSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGA 151 (500)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhc
Confidence 35689999999 5999999999999999988888 66433223355588889999988888888999998753 4457
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC 125 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~ 125 (235)
.++++.+..+|.+++|.+.+++.+++|||+.|++.++..++..
T Consensus 152 ~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 152 FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999998765444433
No 77
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.43 E-value=3.3e-12 Score=106.07 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=97.0
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA 82 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~ 82 (235)
.+.+++++.|+++||+|||+++.++.++..++.+.. ..++.+.+ ++.|++.|++.+...+.....+.+++|++|+++
T Consensus 47 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~l-~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~ 123 (355)
T TIGR00896 47 CFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR--SAPGTALL-FAGTALIGVGIAIINVLLPSLIKRDFPQRVGLM 123 (355)
T ss_pred HHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH--HhccHHHH-HHHHHHHHHHHHHHhccchHHHHHhCcchhhHH
Confidence 457889999999999999999999988877776655 35666655 566999999999888778888889998889999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhh--CcHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEY--GWRGTILLLAGTFL 122 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~--gw~~~~~~~~~~~~ 122 (235)
.+++..+..+|..+++.+.+.+.+.. +||+.|.+.++..+
T Consensus 124 ~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 124 TGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999988887765 39988877665433
No 78
>PRK10133 L-fucose transporter; Provisional
Probab=99.43 E-value=3.9e-12 Score=108.74 Aligned_cols=101 Identities=15% Similarity=0.042 Sum_probs=86.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK- 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~- 78 (235)
.+++++++.|+++||+|||+++.++.+++.++.+++ . .+++++.+ ++.|++.|+|.+...+..+.++.++.|++
T Consensus 73 g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-~a~~~~~l-l~~r~l~G~g~g~~~~~~~~~v~~~~~~~~ 150 (438)
T PRK10133 73 GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTLF-LVGLFIIAAGLGCLETAANPFVTVLGPESS 150 (438)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhCChhh
Confidence 567899999999999999999999999999998775 4 56788766 56699999999999999999998887665
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWI 105 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~ 105 (235)
|....++.+..+.+|..+++.+++.+.
T Consensus 151 ~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 151 GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556789999999999999998876544
No 79
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.43 E-value=1.8e-12 Score=122.84 Aligned_cols=125 Identities=14% Similarity=0.043 Sum_probs=95.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHH---HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTIL---GGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK- 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~- 78 (235)
.+.++++++|+++||+|||+++.. +.++.++..+... ..++++.+ +++|++.|++.+...+...+++.+++|++
T Consensus 64 ~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~-~~~s~~~l-~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~ 141 (1140)
T PRK06814 64 PFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGF-HLNSVPLL-FAALFLMGIHSALFGPIKYSILPDHLNKDE 141 (1140)
T ss_pred HHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHHHHHHHHHHHhhchHHHHhhHhhcCccc
Confidence 356788999999999999997533 2222222222222 34778766 55699999999999999999999988764
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
|++++|+.+++..+|.++||.+++++....+|++.|+..+++.++.+++.+
T Consensus 142 ~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1140)
T PRK06814 142 LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASL 192 (1140)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998444444444444333
No 80
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.42 E-value=2.5e-12 Score=110.49 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=93.2
Q ss_pred ccchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc---c
Q psy6058 4 PLLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK---K 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~---~ 78 (235)
..++++++|+++||+ |||+++++|.++..++.++.. ... +...+ .....+.++|.|...+...+++++.+|+ +
T Consensus 58 ~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~-~~~~~~~~~-~l~l~li~iG~G~~~~~~~alv~elfp~~~~~ 135 (493)
T PRK15462 58 VYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLG-ASEIHPSFL-YLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR 135 (493)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH-HhhcchhHH-HHHHHHHHHhcccccccHHHHHHHHCCCCCcc
Confidence 467888999999999 999999999999999987766 443 22222 2223344566666667777889998875 3
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC 125 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~ 125 (235)
|.++.++.+.+..+|++++|.+.+++.+.+||++.|.+.++..++.+
T Consensus 136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999988665443333
No 81
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.42 E-value=6.1e-12 Score=106.96 Aligned_cols=124 Identities=16% Similarity=0.243 Sum_probs=98.7
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-hH--HHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-SI--EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~--~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
.++.++.|+++||+|+|+++.++.++..++..+.. ... +. ..++++..++.|++.+...+....++.+.+|++ |+
T Consensus 265 i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~-~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g 343 (418)
T TIGR00889 265 IFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA-YGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA 343 (418)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 45678899999999999999999999888877666 532 22 123344588889998888888888999998875 99
Q ss_pred HHHHHHH-hhHHHHHHHHHHHHHHHHhh------hCcHHHHHHHHHHHHHHHHHHh
Q psy6058 81 LATSLGA-CGTGIGTFVYAPLTQYWIEE------YGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 81 ~~~~~~~-~~~~~g~~l~~~~~~~~~~~------~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
++.|+.+ ....+|.+++|.+++.+.++ +||+..|++.+++.++..++.+
T Consensus 344 ~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~ 399 (418)
T TIGR00889 344 SAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFM 399 (418)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999997 67889999999999999987 4699999887776655555543
No 82
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.42 E-value=1.3e-12 Score=110.87 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=100.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH----hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT----VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
.+.+++++.|+++||+|||+++..+.++.+++.+.... ..++++.+ .+.|++.|++.+...+....++.++.|++
T Consensus 64 ~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 142 (417)
T PRK10489 64 AMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAI-YLLGLWDGFFGSLGVTALLAATPALVGRE 142 (417)
T ss_pred HHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHHHHHHHHhhhhhhccCHH
Confidence 45678999999999999999998888777776655431 13556645 55699999988888788888888888765
Q ss_pred -hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 79 -RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 79 -rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
|+++.++......+|..++|.+++.+.+..+|++.|++.++..++..++.
T Consensus 143 ~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 143 NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998999999988776555444443
No 83
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.41 E-value=6.6e-12 Score=105.86 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=103.4
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
..++.++.|++.||+|+|+.+..+.++..++.++.. ..++.+.+ +...++.|++.+..++.....+.+..|++ ||++
T Consensus 262 ~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~ 339 (399)
T PRK05122 262 FVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW-LAPSPWMA-LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAA 339 (399)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456788999999999999999988888888888777 77777655 45578889999888887777777777664 9999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
.++++....+|..+++.+.+.+.+..||++.+++.+++.++.+++.++
T Consensus 340 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 340 LGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877766665555443
No 84
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.40 E-value=1e-11 Score=104.62 Aligned_cols=125 Identities=10% Similarity=0.103 Sum_probs=97.5
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATS 84 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~ 84 (235)
.++.++.|+++||+|||+.+..+.....+...... ..++.+.+ +..+++.+++.+...+....+..+.+|++||++.+
T Consensus 266 i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~ 343 (393)
T PRK15011 266 IPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML-MAHSPAIL-LGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATT 343 (393)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHH
Confidence 45678999999999999988877666555555444 55666544 44577777777776666677788888988999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 85 LGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 85 ~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+++....+|..++|.+++.+.+.+||+..|++.+++.++.++..+..
T Consensus 344 ~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 344 LYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99888999999999999999999999999988776666655554443
No 85
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.40 E-value=5.7e-12 Score=106.55 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=90.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--h-hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-cc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--V-ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD-KK 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~-~~ 78 (235)
.+.++.++.|+++||+|||+++..+.++..++.++... . ..+++.+ +..|++.|++.+...+.....+.+++| ++
T Consensus 60 ~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~ 138 (402)
T TIGR00897 60 AAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLI-LLFYGIRGLGYPLFAYSFLVWVVYNTKQDN 138 (402)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHH-HHHHHHHHcchHHHHhHHHHHHHHhCCHHH
Confidence 45788999999999999999999999988888665420 2 2456555 556999999888777777777777654 46
Q ss_pred hhHHHHHHHhhHHHHH-HHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGT-FVYAPLTQYWIEEYGWRGTILLLAG 119 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~-~l~~~~~~~~~~~~gw~~~~~~~~~ 119 (235)
|++++|+.+.+..+|. .++|.+++.+.+.+||+..++....
T Consensus 139 ~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 139 LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 9999999999999996 5789988898888897766554443
No 86
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.39 E-value=9.1e-12 Score=104.51 Aligned_cols=106 Identities=14% Similarity=0.065 Sum_probs=91.1
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~ 81 (235)
.+.+++++.|+++||+|||+++..+.++..++.++.. ++++++.+ ++.|++.|++.+...+.....+.+.. +++|++
T Consensus 53 ~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (381)
T PRK03633 53 GNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG-LMVGFWSW-LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGR 130 (381)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4578899999999999999999999999999999988 88998866 55699999999988887777676655 446999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
+.+++..+..+|..++|.+.+.+.+...|
T Consensus 131 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 131 LLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999988765433
No 87
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.39 E-value=1.3e-12 Score=116.17 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=102.6
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc---------------------------------------
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN--------------------------------------- 43 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 43 (235)
.++++.++.+++.||+|||+++.+|.++++++.++++ +.+
T Consensus 80 ~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a-lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 158 (633)
T TIGR00805 80 GNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS-LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQC 158 (633)
T ss_pred HHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh-ChHHhcCCccccccccccccccccccccccCCCCCCcccccc
Confidence 4578889999999999999999999999999999887 653
Q ss_pred ----------h-HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhh---
Q psy6058 44 ----------S-IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEY--- 108 (235)
Q Consensus 44 ----------~-~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~--- 108 (235)
+ .+.++++.|++.|+|.+..++....++.|++|++ |+.+.+++..+..+|.++|+.+++++.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~ 238 (633)
T TIGR00805 159 PSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDT 238 (633)
T ss_pred ccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhccccc
Confidence 1 2334466799999999999999999999998775 999999999999999999999999887543
Q ss_pred -------------------CcHHHHHHHHHHHHHHHHH
Q psy6058 109 -------------------GWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 109 -------------------gw~~~~~~~~~~~~~~~~~ 127 (235)
+|+..|++.+++.++..+.
T Consensus 239 ~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 239 GSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred ccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2666777777665554443
No 88
>PRK12382 putative transporter; Provisional
Probab=99.39 E-value=8.5e-12 Score=104.99 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=104.1
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~ 82 (235)
..+++++.|++.||+|+|+.+.++..+..++.++.. ..++.+.+ +...++.|++.+...+.....+.+.+|+ +||++
T Consensus 262 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 339 (392)
T PRK12382 262 FVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW-LAPTAWVA-LAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTA 339 (392)
T ss_pred HHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH-HcccHHHH-HHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHH
Confidence 356788999999999999999999988888888777 77776644 4457888998888888777777777655 59999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
.++++....+|..++|.+.+.+.++.||++.|.+.+++.++..+..+.
T Consensus 340 ~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 340 LGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888776666555443
No 89
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.37 E-value=2e-11 Score=105.91 Aligned_cols=123 Identities=13% Similarity=0.186 Sum_probs=99.5
Q ss_pred chhhhhHHHhhhh-----chhHH-HHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 6 LLGPVASSFVDKY-----GCRWM-TILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 6 i~~~~~g~l~dr~-----G~r~~-~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
++.+++|+++||+ |||+. ++++.+..+++...++ +. .+++.+ ...+++.|++.+...++..+++.+++|
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a-~~~~~~~l~~l-~~~~~l~~~~~a~~~i~~~a~~~~~~~ 137 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG-FLEPGTQLRWL-AALAVVIAFCSASQDIVFDAWKTDVLP 137 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH-HcCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999 99885 6677777777777766 54 355544 445888899888888888899999997
Q ss_pred c-chhHHHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 77 K-KRTLATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 77 ~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
+ +|+++.++...++.+|..+++.+..++.+ ..|||..|++.+++.++..+..++
T Consensus 138 ~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 138 AEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 5 59999999999999999999999999988 479999999988766555444443
No 90
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.37 E-value=1.3e-11 Score=105.00 Aligned_cols=123 Identities=17% Similarity=0.233 Sum_probs=101.4
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
..++.+++|++.||+|+|+.+.++.++..++.++.. +.++.+.+ +..+++.|++.+...+....++.+.+|++ +++.
T Consensus 275 ~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~ 352 (420)
T PRK09528 275 EALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG-FATGPLEV-SILKLLHAFEVPFLLVGVFKYITLNFDVRLSATI 352 (420)
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-hcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCccceeee
Confidence 357888999999999999999999999888888888 88888755 55588888888877777778888887775 7777
Q ss_pred HHH-HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 83 TSL-GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 83 ~~~-~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
.+. ++.+..+|.+++|.+.+.+.+.+||+..|.+.+++.++..++.
T Consensus 353 ~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 399 (420)
T PRK09528 353 YLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS 399 (420)
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence 655 6777889999999999999999999999998777665554443
No 91
>KOG0253|consensus
Probab=99.36 E-value=1.5e-12 Score=105.31 Aligned_cols=143 Identities=16% Similarity=0.137 Sum_probs=116.6
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
+.+.+++..+|.++|++|||+...+.....++...+.+ .++|+..+ +.+|.+.|+|.|+ .+...++-.+.-|. +|.
T Consensus 124 ~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~-~spnf~~L-~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~ 200 (528)
T KOG0253|consen 124 LGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISG-ASPNFASL-CVFRALWGFGVGG-LPVDSAIYLEFLPSSHRW 200 (528)
T ss_pred hhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhc-CCCCeehh-hHHHHHHhccCCC-ccHhHHHHHHhccCcCCC
Confidence 35678999999999999999999999999999989999 89999877 5559999999988 67666766777666 577
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH-HHHHHHHHHhhccCCchhHhhhhhcCCCC
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG-TFLQMCICGALMKDPEWWIREQKRLQNPT 148 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (235)
.-+=+. ..+.+|.++...++-..+.++||||.+...+. +.+.+..+.+.+|+|+++..+++++++.+
T Consensus 201 ~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAle 268 (528)
T KOG0253|consen 201 LLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALE 268 (528)
T ss_pred cchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHH
Confidence 665555 88999999999998888999999998887775 44445555677899999988887776655
No 92
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.36 E-value=2.7e-11 Score=100.97 Aligned_cols=123 Identities=11% Similarity=0.141 Sum_probs=99.2
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATS 84 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~ 84 (235)
.++.++.|++.||+|||+.+.++.++..+..+... ..++.+.+ +...++.|++.+...+....++.+.+|++++++.+
T Consensus 249 ~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 326 (375)
T TIGR00899 249 IPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLA-ADNSLWAL-LMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATT 326 (375)
T ss_pred HHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 34567889999999999998888776666655555 55666645 44577888888887777778888888888889999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 85 LGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 85 ~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+++....+|..++|.+.+.+.+..||+..|++.+++.++..++..
T Consensus 327 ~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 327 LYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988877666555543
No 93
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.34 E-value=1.4e-11 Score=116.69 Aligned_cols=104 Identities=14% Similarity=0.032 Sum_probs=87.0
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r 79 (235)
.+.++++++|+++||+|||++++++.++.+++.++..+ ..++++.+ ++.|++.|++.+...+...+++.+++|++ |
T Consensus 59 ~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r 137 (1146)
T PRK08633 59 PFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLA-FAVTFLLGAQSAIYSPAKYGIIPELVGKENL 137 (1146)
T ss_pred HHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHhhchHHHhhhHHhcCcccc
Confidence 35688899999999999999999888766555544430 34666655 56699999999999999999999998765 9
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEE 107 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~ 107 (235)
++++++..++..+|.++++.+++++.+.
T Consensus 138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 138 SRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998876
No 94
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.33 E-value=5.4e-11 Score=100.58 Aligned_cols=121 Identities=15% Similarity=0.216 Sum_probs=96.5
Q ss_pred cchhhhhHHHhhhh-----chhH-HHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058 5 LLLGPVASSFVDKY-----GCRW-MTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF 75 (235)
Q Consensus 5 ~i~~~~~g~l~dr~-----G~r~-~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~ 75 (235)
.+..+++|+++||+ |||+ .++++.++.+++..... +. .+++.+ ....++.++..+...++..+++.+++
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~-~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~al~~~~~ 123 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA-FCPPHAALWPL-AGLAVLVAFLSASQDIVFDAYSTDVL 123 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH-hcCccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999 7765 67788888877777776 55 345544 44456667778888888889999998
Q ss_pred ccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhh-hCcHHHHHHHHHHHHHHHHH
Q psy6058 76 DKK-RTLATSLGACGTGIGTFVYAPLTQYWIEE-YGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 76 ~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~ 127 (235)
|++ |+++.++...+..+|..+++.+...+.+. .|||..|++.+++.++..+.
T Consensus 124 ~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 124 HPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 876 99999999999999999999999998886 59999999888765544443
No 95
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.32 E-value=6.3e-11 Score=98.38 Aligned_cols=120 Identities=10% Similarity=0.026 Sum_probs=94.0
Q ss_pred hhhhHHHhhhh-----chhHH-HHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058 8 GPVASSFVDKY-----GCRWM-TILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK- 77 (235)
Q Consensus 8 ~~~~g~l~dr~-----G~r~~-~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~- 77 (235)
.+++|+++||+ |||+. ++.+.++.+++.+..+ +. .+.+.+ ....++.+++.+...++..+++.+++|+
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~-~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 115 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS-FLVPSTDLPLL-AGLAFLIAFFSATQDIALDAWRLEILSDE 115 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH-cCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence 88999999998 88886 4566777777766666 55 344434 3335666777777888888999999866
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC--------cHHHHHHHHHHHHHHHHHHh
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG--------WRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g--------w~~~~~~~~~~~~~~~~~~~ 129 (235)
+|+++.++...+..+|.++++.+++.+....| ||..|++.+++.++..+..+
T Consensus 116 ~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 116 ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999988888 99999888776555444433
No 96
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.31 E-value=4.7e-11 Score=100.65 Aligned_cols=120 Identities=17% Similarity=0.058 Sum_probs=84.2
Q ss_pred chhhhhHHHhhhhchhHHHH-HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h--hH
Q psy6058 6 LLGPVASSFVDKYGCRWMTI-LGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R--TL 81 (235)
Q Consensus 6 i~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r--g~ 81 (235)
++.+++++ .||+|||+.++ .+.++..++.++.+ ++++++.+++. +.+.|...+...+....++.++.+++ | +.
T Consensus 67 ~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (393)
T PRK15011 67 VSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA-WNRNYFVLLFV-GVFLSSFGSTANPQMFALAREHADKTGREAVM 143 (393)
T ss_pred HHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHhhhccchHHH
Confidence 34444455 99999998754 55555567777777 78888866445 44444334455566666666766543 4 34
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
..++.+.+..+|.+++|++++.+.+++|||..|++.++..++..+..
T Consensus 144 ~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 190 (393)
T PRK15011 144 FSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV 190 (393)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 45788888999999999999999999999999998877655554443
No 97
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.31 E-value=2.4e-11 Score=102.56 Aligned_cols=123 Identities=16% Similarity=0.108 Sum_probs=101.7
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLAT 83 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~ 83 (235)
.++.++.|+++||+|||+.+..+.++..++.+... ..++.+.+ .+.+++.|++.+...+.....+.+..|+ ++|+..
T Consensus 272 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 349 (408)
T PRK09874 272 LLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS-FVQTPLQL-GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIF 349 (408)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeee
Confidence 45667789999999999999998888887777776 66776655 4557888999988888888877776665 499999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
++++....+|..++|.+++.+.+..||+..|++.+++.++..+..+
T Consensus 350 ~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 350 SYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877766655544
No 98
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.30 E-value=5.1e-11 Score=97.85 Aligned_cols=125 Identities=20% Similarity=0.243 Sum_probs=108.7
Q ss_pred cccchhhhhHHHhhhhchhH-HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058 3 VPLLLGPVASSFVDKYGCRW-MTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
...++.++.+++.||+|||+ .+..+.++..++.+... ..++.+.. ....++.|++.+...+....++.+..|+ +|+
T Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (352)
T cd06174 223 GGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-LAPSLALL-LVALLLLGFGLGFAFPALLTLASELAPPEARG 300 (352)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHhccchhHHHHHHhhcCHHHHH
Confidence 34678899999999999999 99999999999999888 77776655 4558888999999999999999998875 599
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+..++......+|..++|.+.+.+.+..+|+..+++.+++.++..+..+
T Consensus 301 ~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 301 TASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999999999999988887766665543
No 99
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.30 E-value=3e-11 Score=100.29 Aligned_cols=120 Identities=10% Similarity=-0.003 Sum_probs=96.8
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-QYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
..+++++.|++.||+|||+.+.++.++..++.++.. ..++... .++...++.|++.+...+..+.++.+.+|++ |++
T Consensus 253 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 331 (377)
T TIGR00890 253 NGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML-FIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAA 331 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhh
Confidence 457889999999999999999999888888887776 5553321 2233356678877777777778888888765 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~ 124 (235)
+.|+.+....+|..++|.+.+.+.++.||++.|.+.+++.++.
T Consensus 332 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 332 NYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998877655543
No 100
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.29 E-value=7e-11 Score=102.42 Aligned_cols=117 Identities=11% Similarity=-0.074 Sum_probs=84.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r 79 (235)
+..++.++.|+++||+|||++++.+.++..++.++.. .. .+.+.+ ....++.++......+..+.++.+.+|++ |
T Consensus 323 ~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (496)
T PRK03893 323 GAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVF-AIGGANVWVL-GLLLFFQQMLGQGISGLLPKLIGGYFDTEQR 400 (496)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-hccccHHHHH-HHHHHHHHHHhcccchhhHHHHHhhCCHHHh
Confidence 3467889999999999999998888776666554443 32 222222 22233333333233455667788888775 9
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHH
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTF 121 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~ 121 (235)
+++.++.+....+|..++|.+.+.+.+++||+..+...++..
T Consensus 401 g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 401 AAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred hcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 999999999999999999999999999999998876655433
No 101
>KOG0252|consensus
Probab=99.29 E-value=8.3e-12 Score=103.68 Aligned_cols=128 Identities=17% Similarity=0.037 Sum_probs=97.1
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc------hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN------SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
+..+|++++|++.||+|||+++...+++++++.++.+ ++. +.-+.+.++|+++|+|.|+-+|...++.+|...
T Consensus 96 Gti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~-~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an 174 (538)
T KOG0252|consen 96 GTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSG-LSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESAN 174 (538)
T ss_pred HHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhc-cCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhh
Confidence 4578999999999999999999999999999998776 542 222344677999999999999999999999886
Q ss_pred cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhh---------------hCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 77 KK-RTLATSLGACGTGIGTFVYAPLTQYWIEE---------------YGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~---------------~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
++ ||...+...+++++|...|..++..+..- .-||..+.+.++..+.++..-+.+
T Consensus 175 ~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M 245 (538)
T KOG0252|consen 175 KKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKM 245 (538)
T ss_pred hccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 65 99999988888888877776665444321 127777766555555554444433
No 102
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.24 E-value=2.2e-10 Score=97.27 Aligned_cols=123 Identities=8% Similarity=-0.134 Sum_probs=98.4
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
..++.++.+++.||.++++.+..+.++..++.++.. ..++.+.+ +...++.|++.+...+....++.+..|++ ||++
T Consensus 272 ~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 349 (417)
T PRK10489 272 AALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-LMPMWILA-VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRI 349 (417)
T ss_pred HHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-ccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 456788889999998888888888888888877777 77776644 44467778888776677777888888875 9999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
.|++.....+|..++|.+.+.+.+.+|++..+++.+++.++..++.
T Consensus 350 ~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 395 (417)
T PRK10489 350 NGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL 395 (417)
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888887776555444443
No 103
>PRK03545 putative arabinose transporter; Provisional
Probab=99.23 E-value=3.7e-10 Score=95.05 Aligned_cols=125 Identities=14% Similarity=-0.000 Sum_probs=94.8
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLAT 83 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~ 83 (235)
..+++++.|+++||+|+|.. ..+.++..++........++.+.+ +...++.|++.+...+.....+.+..|++|+++.
T Consensus 254 ~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (390)
T PRK03545 254 GIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAANSEWHL-SVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAM 331 (390)
T ss_pred HHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHH
Confidence 46788999999999998865 444444444443332145666544 4457777888776666667777788888899999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
|++.....+|..+||.+++.+.+++|++..|++.+.+.++.++....
T Consensus 332 g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 332 ALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888776666555443
No 104
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.22 E-value=5.3e-11 Score=98.07 Aligned_cols=123 Identities=19% Similarity=0.249 Sum_probs=102.1
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN---SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r 79 (235)
..+.-++.|.+.||+|.|++..++.++..+.++..+ ++. +++++ ++.+++.|++.+ .+......++.||||+ +
T Consensus 62 GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~-~a~~~~~~~~l-l~~gll~G~~Ga-sFav~m~~~s~~fP~~~q 138 (417)
T COG2223 62 GALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLA-FAVTYPSTWQL-LVIGLLLGLAGA-SFAVGMPNASFFFPKEKQ 138 (417)
T ss_pred hHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHH-HHccCCchHHH-HHHHHHHhcccc-eehcccccccccCChhhh
Confidence 345667899999999999999999999999999888 764 34466 555899998654 5677788999999886 9
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhC---cHHHHHHHHHHHHHHHHHHhh
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYG---WRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~g---w~~~~~~~~~~~~~~~~~~~~ 130 (235)
|.++|++. ..++|..+...+++.+....| |+.+..+.....++..++.++
T Consensus 139 G~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~ 191 (417)
T COG2223 139 GLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL 191 (417)
T ss_pred hHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 899999999999999999999 998888877766665555444
No 105
>PRK03699 putative transporter; Provisional
Probab=99.21 E-value=2.9e-10 Score=95.87 Aligned_cols=122 Identities=11% Similarity=-0.009 Sum_probs=97.5
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLAT 83 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~ 83 (235)
..++.++.|+++||+++|+.+.....+..+..++.. ..++.+.+ ....++.|++.+..++....+..+..|++++...
T Consensus 254 ~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (394)
T PRK03699 254 YMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV-NTDDPSHL-LYAILGLGFFSSAIYTTIITLGSQQTKVASPKLV 331 (394)
T ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH-HcCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH
Confidence 468899999999999999998888777777666666 66666544 3346777887777777777777777777778888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+....+..+|..++|.+.+++.+..|++..+++.+++.++..+.
T Consensus 332 g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 332 NFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 88888889999999999999999999999998877766555444
No 106
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.21 E-value=1.7e-10 Score=96.90 Aligned_cols=117 Identities=13% Similarity=-0.007 Sum_probs=84.5
Q ss_pred cccchhhhhHHHhhhhchh----HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 3 VPLLLGPVASSFVDKYGCR----WMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r----~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
...++++++|+++||+||+ +.+.++.++. ...... ..++++.+ +..|++.|++.+...+...+++.++ .++
T Consensus 51 ~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l-~i~~~l~g~~~~~~~~~~~a~~~~~-~~~ 125 (382)
T PRK11128 51 ARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWF-GAHSFWLL-FVAIGLFNLFFSPLVPLTDALANTW-QKQ 125 (382)
T ss_pred HHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHH-hcccHHHH-HHHHHHHHHHHcccccHHHHHHHHH-Hhh
Confidence 3467789999999999984 2222222221 222233 45778766 4558988988887777766666655 456
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~ 124 (235)
|+++.+.......+|.+++|.+++++.+++|||..|++.++..++.
T Consensus 126 ~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~ 171 (382)
T PRK11128 126 IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM 171 (382)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 8888888888889999999999999999999999998776544433
No 107
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.20 E-value=2.9e-10 Score=98.05 Aligned_cols=126 Identities=15% Similarity=-0.031 Sum_probs=86.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT-VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
+..++.+++|+++||+|||+.++.+..+..++..+... ..++.+.+ .+..++.|++...........+.+.+|++ ||
T Consensus 306 ~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g 384 (467)
T PRK09556 306 GALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMY-LASLFALGFLVFGPQLLIGVAAVGFVPKKAIG 384 (467)
T ss_pred HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhcchhhHH
Confidence 45789999999999999998776655444433322220 23444433 34466667543333333335566888885 99
Q ss_pred HHHHHHHhhHHH-HHHHHHHHHHHHHh------------hhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 81 LATSLGACGTGI-GTFVYAPLTQYWIE------------EYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 81 ~~~~~~~~~~~~-g~~l~~~~~~~~~~------------~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
++.|+.+....+ |.+++|.+.+++.+ ..||+..|++..++.++..++.+
T Consensus 385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 999999888886 77999999999999 57899999887776666555544
No 108
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.20 E-value=3.4e-10 Score=95.61 Aligned_cols=124 Identities=13% Similarity=0.027 Sum_probs=94.6
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
..++.++.|+++||+|+|+.+..+.+...++.++.. ..++.+.+ ....++.|++.+...+....++.+.+|.+ |+++
T Consensus 268 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 345 (406)
T PRK11551 268 GALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA-AAPSFAGM-LLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTG 345 (406)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCcHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhh
Confidence 467889999999999999998887777777766666 66666645 34467778877777777888888888775 9999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHh
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~ 129 (235)
.|+.+....+|..++|.+.+.+.++.+ |...++....+.+...++.+
T Consensus 346 ~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 346 VGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred hhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988754 55555555544444444443
No 109
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.20 E-value=5e-10 Score=94.46 Aligned_cols=126 Identities=13% Similarity=-0.019 Sum_probs=84.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--hhc----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--VAN----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
.+.+++++.|+++||+|||+.++.+.+...++...... ..+ +.....++.+++.|++.+...+....++.+..
T Consensus 50 ~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 128 (396)
T TIGR00882 50 FSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS- 128 (396)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-
Confidence 45788999999999999999998877665544432210 111 12222234467777777766666666655532
Q ss_pred cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 77 KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
++++...+.......+|.+++|.+++.+.+ .+|+..|++.+++.++..++.+.
T Consensus 129 ~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 129 RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence 234556677777788999999999887765 59999998877766655544433
No 110
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.19 E-value=1.3e-10 Score=99.93 Aligned_cols=120 Identities=8% Similarity=0.084 Sum_probs=89.8
Q ss_pred cchhhhhHHHhhh--hchhHHHHHH--HHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch
Q psy6058 5 LLLGPVASSFVDK--YGCRWMTILG--GIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR 79 (235)
Q Consensus 5 ~i~~~~~g~l~dr--~G~r~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r 79 (235)
.++.++.|+++|| +++|+...++ .++.+++.++.. ..++++.+ ++.+++.|++.+...+....++.+.+|+ ++
T Consensus 290 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~-~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~ 367 (455)
T TIGR00892 290 IFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA-LAGDYTGL-VIYCIFFGLSFGSVGALLFEVLMDLVGAQRF 367 (455)
T ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH-HhchHHHH-HHHHHHHHHHhchHHHHHHHHHHHHhhHHHH
Confidence 4567778999997 3444433333 333344445555 66777755 4558888999988888888888888766 49
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHHHHHH
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFLQMCI 126 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~ 126 (235)
+++.+++++...+|..++|.+++.+.+.. +|+..|++.+++.++..+
T Consensus 368 g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 368 SSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999887 599999887776554443
No 111
>PRK09952 shikimate transporter; Provisional
Probab=99.18 E-value=9.6e-10 Score=94.09 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=89.0
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT-V-ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
+++.++.|+++||+|||++++.+.++..++.+.... . ..+...+++...++.+++.+...+....++.|.+|.+ |+.
T Consensus 300 ~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~t 379 (438)
T PRK09952 300 CLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYS 379 (438)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHH
Confidence 456778999999999999988887766555433320 1 2222223233355667777777788888999999886 998
Q ss_pred HHHH-HHhhHHHHHHHHHHHHHHHHhhh--CcHHHHHHHHHHHHHHHHHHhh
Q psy6058 82 ATSL-GACGTGIGTFVYAPLTQYWIEEY--GWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 82 ~~~~-~~~~~~~g~~l~~~~~~~~~~~~--gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
+.++ +..+..+|+.++|.+.+++.+.. +|...+.+.+++.++..+..+.
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9988 44555689999999999998754 4888777766666665555443
No 112
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.18 E-value=3.1e-10 Score=95.35 Aligned_cols=115 Identities=10% Similarity=-0.084 Sum_probs=83.6
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHH-HHHH-HHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGII-SGTG-FVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg 80 (235)
...++++++|+++||+||+........+ ..+. ..... .+++++.+ ++.|++.|.+.+...+...++..+ .+++|+
T Consensus 51 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l-~~~~~l~~~~~~~~~p~~~al~~~-~~~~~~ 127 (382)
T TIGR00902 51 ARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA-GAHNAWLL-FIAIGLFALFFSAGMPIGDALANT-WQKQFG 127 (382)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-hhhhHHHH-HHHHHHHHHHHccchhHHHHHHHH-HHHHcC
Confidence 3457788999999999985433222211 1111 12333 56778766 445888888877777776666554 456789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHH
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~ 120 (235)
++.|.......+|.+++|.+++.+.+++|||..|++....
T Consensus 128 ~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 128 LDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 9999999999999999999999999999999999876654
No 113
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.18 E-value=8.8e-10 Score=93.24 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=91.0
Q ss_pred cccchhhhhHHHhhhhchhHHHH-HHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTI-LGGIISGTGFVLSATV----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
+..++.++.|+++||+|||+.+. .+.+...++.+..... .++.+.+ +...++.|++.+...+ ....+.+..|+
T Consensus 269 ~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~-~~~~~~~~~~~ 346 (402)
T TIGR00897 269 TNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA-LIIAIALGIFLAGYVP-LAAVFPTLAPK 346 (402)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH-HHHHHHHHHHHHHHHH-HHHHHHhhCcc
Confidence 35788899999999999888764 3333333333222201 2344433 4446777887766533 44556677787
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+||++.|+.+....+|..++|.+.+.+.+..||...+++.+++.++..+...+.
T Consensus 347 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 347 HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999998887776666655443
No 114
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.18 E-value=9.7e-10 Score=92.35 Aligned_cols=120 Identities=9% Similarity=0.099 Sum_probs=100.7
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~ 82 (235)
..++.++.+++.||+|+|+.+.++.+...+..++.+ +.++.+.+ +...++.|++.+...+....++.+. |+ +|+++
T Consensus 253 ~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~ 329 (382)
T TIGR00902 253 EIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG-AIEAFPLI-FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKL 329 (382)
T ss_pred HHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH-hHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHH
Confidence 345678889999999999999999999999999998 88988866 4458999999999999999999987 55 59999
Q ss_pred HHHHH-hhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 83 TSLGA-CGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 83 ~~~~~-~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+++++ ...++|..++|.+++++.+++|+ ..|++.+++.++.+++
T Consensus 330 q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 330 QALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 99976 57789999999999999999986 6666666666555444
No 115
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.14 E-value=1.7e-09 Score=87.72 Aligned_cols=124 Identities=21% Similarity=0.261 Sum_probs=110.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA 82 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~ 82 (235)
+..+.+++..++..|+|..+.+.++.++..++.++-. .. +.+.+ ...-++.|.|.+...+..+..+.+.||++-+..
T Consensus 59 ~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~-~~-~~~~L-~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~m 135 (395)
T COG2807 59 AFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRS-LG-GLPLL-FLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLM 135 (395)
T ss_pred HHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh-cc-cHHHH-HHHHHHHHhhHHHHHHhhhHHHHhhcccchhhH
Confidence 4567889999999999999999999999999999988 66 44435 555788899999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHHHHHHHHh
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+|+|.+...+|.++++.+...+.++. |||....+.+...++.++.++
T Consensus 136 tglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl 183 (395)
T COG2807 136 TGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL 183 (395)
T ss_pred HhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998887 799999999998887777755
No 116
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.12 E-value=8.2e-10 Score=95.29 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=87.6
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--ch-HHHHHHHHHHHHHhhhhhhh-HhHHHHHHhhcccc-
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--NS-IEAQYITFGCIAGCGLSLAY-VTAVVSIAYWFDKK- 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~-~~~l~i~~~~l~G~~~g~~~-~~~~~~~~~~~~~~- 78 (235)
..++.+++++++||+|||+.++.+.++.+++.++.. .. .+ .+...+...++.+.+.+..+ +....++.|.+|++
T Consensus 319 ~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 397 (479)
T PRK10077 319 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG-TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 397 (479)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH-HHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence 357789999999999999999999998888877765 33 11 11121222334444444333 45567888998875
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHH------HhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYW------IEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~------~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
|+++.|+......+|.++++.+.+.+ .+.++|++.|++.+++.++..++.+
T Consensus 398 r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (479)
T PRK10077 398 RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 454 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence 99999999998888888886665543 3578888888887766555555443
No 117
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.12 E-value=1.4e-09 Score=92.49 Aligned_cols=126 Identities=15% Similarity=0.010 Sum_probs=76.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--hhc----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--VAN----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
.+.++++++|+++||+|||++++++..+..++...... ... +.....+..+++.|.+.....+....+. +..+
T Consensus 58 ~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 136 (420)
T PRK09528 58 FALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERVS 136 (420)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHHH
Confidence 45788999999999999999988876655544332210 111 1110111112223332222222222222 2223
Q ss_pred cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 77 KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
++++...+.......+|..++|.+++.+.+ .+|++.|++.++..++..++.++
T Consensus 137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 137 RRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred hhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 457778888888889999999999998876 48999998877666555555443
No 118
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.12 E-value=5.3e-10 Score=95.68 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=90.8
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-----ch-----HHHHHHHHHHHHHhhhhhhh-HhHHHHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-----NS-----IEAQYITFGCIAGCGLSLAY-VTAVVSI 71 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~l~i~~~~l~G~~~g~~~-~~~~~~~ 71 (235)
+..++.++.|+++||+|||+.+.++.++..++.++.. +. ++ .+..+.. ..+.+.+.+... +....++
T Consensus 331 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 408 (481)
T TIGR00879 331 VNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG-ILGASFVTGSSKSSGNVAIVF-ILLFIAFFAMGWGPVPWVIV 408 (481)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHhhcccCCcccchhHHHHHH-HHHHHHHHHccccCeehhhh
Confidence 3467889999999999999999988877777766554 21 11 1212122 223333333322 4445566
Q ss_pred Hhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 72 AYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 72 ~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
.+.+|++ |+++.++......+|.+++|.+.+.+.++.+|++.|++.++++++..++.++
T Consensus 409 ~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 409 SEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhe
Confidence 8888875 9999999999999999999999999999999999998888776666665543
No 119
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.11 E-value=2.6e-09 Score=89.70 Aligned_cols=120 Identities=10% Similarity=0.030 Sum_probs=91.5
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~ 82 (235)
..+++++.|++.||+|+|+++..+..+..++.+... .... . +...++.|++.+...+.....+.+..|+ +++..
T Consensus 248 ~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~-~-~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~ 322 (381)
T PRK03633 248 GILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAA-M-APALFILGAAGFTLYPVAMAWACEKVEHHELVAM 322 (381)
T ss_pred HHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHH-H-HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHH
Confidence 456888899999999999998888877777655432 2222 2 2235666777667778888888887766 47777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
.+.+...+.+|.+++|.+++.+.+++||++.|.+.+.+.++..+..
T Consensus 323 ~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 323 NQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999998777666554443
No 120
>TIGR00898 2A0119 cation transport protein.
Probab=99.09 E-value=1.8e-09 Score=93.86 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=92.6
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSI-EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
.++.++.+++.||+|||+.+.++.++.++++++.. +.++. ..+.+...++.+++.+..++....+..|.+|.+ |+++
T Consensus 369 i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 447 (505)
T TIGR00898 369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL-FVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLG 447 (505)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhh
Confidence 45778899999999999999999998888887777 55433 122233345556677777788888899999886 9999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
.|+.+....+|++++|.+.+ + ...++...+++.+++.++..++.++
T Consensus 448 ~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
T TIGR00898 448 VGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF 493 (505)
T ss_pred HhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988 3 4456666777766655555444443
No 121
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.09 E-value=3.8e-10 Score=95.07 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=104.7
Q ss_pred cchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-c--
Q psy6058 5 LLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-K-- 78 (235)
Q Consensus 5 ~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~-- 78 (235)
.+.+.++||++|| .|+|+.++.|.++..++.++.+ .+. +...+++. .++.++|.|..-+...+.+++.+|+ +
T Consensus 75 Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~-~~~~~~~~gl~i~-L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 75 YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLA-ISSVSGPGGLYIG-LALIIVGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh-ccccccccHHHHH-HHHHHhccccccccHHHHHHHhcCCCCcc
Confidence 4567899999999 5999999999999999999998 663 55556555 6666799999999999999998765 3
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
|-.+.++++++.++|+.++|.+.+++.+++||...|...++-....++..++.
T Consensus 153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~ 205 (498)
T COG3104 153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205 (498)
T ss_pred cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 66778889999999999999999999999999999998887666665555443
No 122
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.08 E-value=2.3e-09 Score=93.22 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=99.8
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK- 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~- 78 (235)
.++.++++|.++||+.||++++.+-++..+..+...++. .+.+.+ ++..++.|++.+...+...+++.+..|++
T Consensus 58 ~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~L-l~~~fl~g~~~a~~~PA~~A~ip~lV~~~~ 136 (524)
T PF05977_consen 58 ILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLL-LILTFLLGIGSAFFNPAWQAIIPELVPKED 136 (524)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 357889999999999999999999887766554443111 355655 45578889999999999999999998885
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
...++++..+..++...+||.+++.+....|-.+.|.+.++..++...+
T Consensus 137 L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~ 185 (524)
T PF05977_consen 137 LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA 185 (524)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999888998877655544433
No 123
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.07 E-value=2e-09 Score=93.67 Aligned_cols=122 Identities=13% Similarity=0.006 Sum_probs=81.9
Q ss_pred chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS---IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
++.+++++++||+|||+.++++.++.++++++.. ...+ .....+...+...++.....+....+.+|.+|.+ |++
T Consensus 350 ~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~ 428 (502)
T TIGR00887 350 PGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG-FAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRST 428 (502)
T ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH-HHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHH
Confidence 4667789999999999999888888777766555 3321 1111111111111111122344556778999987 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhh----------hCcHHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEE----------YGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~----------~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+.++.+....+|++++|.+.+++.+. .++...|++.+++.++..+..
T Consensus 429 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 429 AHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998874 345566776666555544443
No 124
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.06 E-value=7.8e-10 Score=95.65 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=82.1
Q ss_pred ccchhhhhHHHhhhhchh-------HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 4 PLLLGPVASSFVDKYGCR-------WMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
..++.+++|+++||++|| ..+.+..++..++.++.. ..++.+.. +...++.+++.+...+....++.+..|
T Consensus 301 ~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~ 378 (476)
T PLN00028 301 NLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG-RANSLGAA-IVVMILFSIFVQAACGATFGIVPFVSR 378 (476)
T ss_pred HHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-ccchHHHH-HHHHHHHHHHHHHhhhhhcccCcccCh
Confidence 467889999999999875 222233333333334444 44554433 333455566555555555555666677
Q ss_pred cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhccCCch
Q psy6058 77 KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEW 136 (235)
Q Consensus 77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (235)
+++|.+.|+...+..+|+.++|.+.+ ..+..+|+..|++.+++.++..++.++.+.+.+
T Consensus 379 ~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~~ 437 (476)
T PLN00028 379 RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIHFPQW 437 (476)
T ss_pred hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHheeccch
Confidence 78999999988877777777776643 222346999999888777777666666554443
No 125
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.06 E-value=4e-09 Score=86.75 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=103.8
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK- 77 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~- 77 (235)
.+|.++++..|++.+|+|+|+.++.|..++++++.++. -+ .++. ++++..++.|.|.+...+..+.+++...++
T Consensus 59 ~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~-pAa~~~~y~-~FL~~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 59 GGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW-PAASSKSYG-FFLVALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred HHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-hhhhhhhHH-HHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence 46788999999999999999999999999999999885 33 4444 446667888999999999999999998766
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhh-------------------hCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEE-------------------YGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-------------------~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+-...+.+.+.++.+|..++|.+++.+..+ -.|++.|...+...++..+.....
T Consensus 137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~ 209 (422)
T COG0738 137 SAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS 209 (422)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence 477889999999999999999999988762 137777777776655555554443
No 126
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.05 E-value=7.8e-09 Score=88.14 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=84.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-----
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD----- 76 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~----- 76 (235)
...++.+++++++||+|+|+.+.++.++.+++.++.. +. ++.+.+ +...++.|++.+...+...+++++..+
T Consensus 269 ~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 346 (437)
T TIGR00792 269 AGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF-FAGSNLPLI-LVLIILAGFGQNFVTGLVWALVADTVDYGEWK 346 (437)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3467888999999999999999999888888877776 54 344433 444677788888888888888777543
Q ss_pred --cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 77 --KK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 77 --~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
++ +|...|+.+.+..+|..+++.+.+.+.+..||
T Consensus 347 ~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 347 TGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33 79999999999999999999999999887666
No 127
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.05 E-value=5.3e-09 Score=88.95 Aligned_cols=112 Identities=13% Similarity=-0.022 Sum_probs=78.2
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhh--hhhhhHhHHHHHHhhcccc-h
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCG--LSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~--~g~~~~~~~~~~~~~~~~~-r 79 (235)
..++.+++|++.||+|||+.+..+.++..+..+... ..+ +...+ +. .++.|++ .....+..+.++.+.+|++ |
T Consensus 279 ~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 355 (426)
T PRK12307 279 TVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLF-RIPQDNYLL-LG-ACLFGLMATNVGVGGLVPKFLYDYFPLEVR 355 (426)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HHccccHHH-HH-HHHHHHHHhcccHhHHHHHHHHHhCcHHHH
Confidence 467788999999999999998888877666655443 322 22212 22 2233332 2223344556778888876 9
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHH
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLA 118 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~ 118 (235)
|++.|+......+|+.++|.+.+++.+.+|+....++..
T Consensus 356 g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~ 394 (426)
T PRK12307 356 GLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIV 394 (426)
T ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999999999999999999999999988765444333
No 128
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.05 E-value=3.4e-09 Score=89.41 Aligned_cols=122 Identities=14% Similarity=0.210 Sum_probs=96.0
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLAT 83 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~ 83 (235)
.++.+..|++.||+|+|+.+.++.++.+++..+.. ..++.+.+ +...++.|++..........+..+.++++ +++..
T Consensus 268 ~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~ 345 (396)
T TIGR00882 268 ALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS-FATTALEV-VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIY 345 (396)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-hcCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEee
Confidence 45678889999999999999999988888888777 77777755 44478888877665555555666666665 77766
Q ss_pred HH-HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 84 SL-GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 84 ~~-~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+. ++....+|+.+++.+++++.+..||+.+|++.+++.++..+..
T Consensus 346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 65 6788899999999999999999999999999888766555543
No 129
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.05 E-value=6.3e-09 Score=87.78 Aligned_cols=126 Identities=10% Similarity=-0.064 Sum_probs=91.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-cc-chh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DK-KRT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~-~rg 80 (235)
...++.++.|++.||+|||+.+.++..+..++.++......+...+ . .++.|++.+...+.......+.. |+ +++
T Consensus 252 ~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g 328 (393)
T PRK09705 252 GQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL-W--AMVCGLGLGGAFPLCLLLALDHSVQPAIAG 328 (393)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-H--HHHHHHhccchHHHHHHHHHhhcCCHHHHH
Confidence 3568899999999999999998888877777766554123332212 1 24557777777777666666655 44 499
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhhc
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+..++.+....++..++|.+.+++.+..| |...|++.+++.+...++.+.+
T Consensus 329 ~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 329 KLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999986 7777777666555555554443
No 130
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.04 E-value=1.4e-08 Score=88.38 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=101.0
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
..+|+++.+++.+|+++++.+..+.++.+++.+.++ +.++.+.. +...++.|++.....+...+.+-+..|++ ||++
T Consensus 267 ai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la-l~~~~~~~-~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv 344 (524)
T PF05977_consen 267 AILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA-LSPSFWLA-LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRV 344 (524)
T ss_pred HHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh-cchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHH
Confidence 456666777777888888888899999999999999 88888855 44477889888888777777777788886 9999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
++++.+....+..+|..+.|.+.+.+|.+.++.+.++..++..++.+
T Consensus 345 ~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 345 FSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998876665544444433
No 131
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.04 E-value=1.9e-09 Score=90.01 Aligned_cols=116 Identities=15% Similarity=0.031 Sum_probs=85.5
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHH--HHHHHhh--chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGF--VLSATVA--NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK- 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~--~~~~~~~--~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~- 78 (235)
..++.++.|+++||+|||+.+..+..+..+.. +... .. ++.+.+ +...++.|++.+...+....++.+.+|++
T Consensus 268 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 345 (394)
T TIGR00883 268 FFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA-LLDSGSFTLF-FFLVLGLALIGGMYTGPMGSFLPELFPTEV 345 (394)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-HhcCCchHHH-HHHHHHHHHHHHHHhhhHHHHHHHhCCccc
Confidence 45778899999999999998775554443332 2222 22 344433 44467778888888888889999998875
Q ss_pred hhHHHHH-HHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHH
Q psy6058 79 RTLATSL-GACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTF 121 (235)
Q Consensus 79 rg~~~~~-~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~ 121 (235)
|+++.++ ++.+..+|..++|.+.+.+.++.| |+..++...++.
T Consensus 346 ~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 346 RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 9999987 566677888999999999999988 887776655543
No 132
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.02 E-value=6.1e-09 Score=85.14 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=90.1
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA 82 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~ 82 (235)
++.++.++.+++.||+|+|+.+.++.++..++.++.. ..++...+ . .-++.|++.+..+|...+...+.+|++.+.+
T Consensus 190 ~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~-~~~~~~~~-~-~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~a 266 (310)
T TIGR01272 190 GAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAA-LTHGYVAM-W-FVLALGLFNSIMFPTIFSLALNALGRHTSQG 266 (310)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-HcCCHHHH-H-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 4578999999999999999998888888777776665 54544323 2 2456799999999999998888888876777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~ 120 (235)
.++. .+..+|++++|.+.+.+.|..|.+..|++..++
T Consensus 267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 7775 556789999999999999999998888754443
No 133
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.02 E-value=8.7e-09 Score=88.55 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=77.7
Q ss_pred ccchhhhhHHHhhhh--chhHHH-HHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 4 PLLLGPVASSFVDKY--GCRWMT-ILGGIISGTGFVLSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~--G~r~~~-~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
..++.+++|+++||+ +||... .....+..++.++.. . ..+.+.. +...++.|.+..........++.+.+|++
T Consensus 302 ~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~ 379 (452)
T PRK11273 302 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-LNPAGNPTVD-MACMIVIGFLIYGPVMLIGLHALELAPKK 379 (452)
T ss_pred HHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH-HhcccChHHH-HHHHHHHHHHHHhHHHHHHHHHHHHcChh
Confidence 356788999999999 555432 222233333333332 2 2233322 22234444433222223334566788775
Q ss_pred -hhHHHHHHHhhHHHHHHH-HHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 79 -RTLATSLGACGTGIGTFV-YAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 79 -rg~~~~~~~~~~~~g~~l-~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
||++.|+.+....+|+.+ +|.+.+.+.++.||+..|++.++++++..++..
T Consensus 380 ~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 380 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999998888887655 799999999999999999887776655555544
No 134
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.01 E-value=4.9e-09 Score=87.35 Aligned_cols=123 Identities=14% Similarity=0.037 Sum_probs=81.3
Q ss_pred ccchhhhhHHHhhhhchhHHH-HHHHHHHHH-----HHHHHHH-hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMT-ILGGIISGT-----GFVLSAT-VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~-~~~~~~~~~-----~~~~~~~-~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
..++.++.|+++||+|||+.. ........+ +...... ..++.+ ..+...++.+.+.+ ..+....++.+.+|
T Consensus 264 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 341 (399)
T TIGR00893 264 GFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPY-AALALVALGFFGLG-AGAIGWALISDNAP 341 (399)
T ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHhchh-hhhHHHHHHHhhcC
Confidence 457889999999999999511 111111111 1111110 112333 22332333333333 67778888999887
Q ss_pred cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHH
Q psy6058 77 KK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~ 128 (235)
++ |+++.++.+....+|..++|.+.+.+.+..| |++.+++.+++.++..+..
T Consensus 342 ~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 342 GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 75 9999999999999999999999999999988 9999988777665554443
No 135
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.01 E-value=1.4e-08 Score=88.18 Aligned_cols=127 Identities=9% Similarity=0.109 Sum_probs=91.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhh-chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVA-NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~-~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
+..++.+++|+++||+|+|+.+.++.++..++.++. . .. ++.+.+ ....++..++.|...+....+..+..+++
T Consensus 271 ~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~-~~~~~~~~l-~~~~~l~~~~~g~~~~~~~a~~~~l~~~~ 348 (491)
T PRK11010 271 ATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLS-ITDKNLYSM-GAAVFFENLCGGMGTAAFVALLMTLCNKS 348 (491)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 346889999999999999888776666555544332 2 22 344333 22244444445555566667777877775
Q ss_pred -hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 79 -RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 79 -rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+++..++.+....+|..+++.+++.+.+.+||+..|.+.+++.+..++..+..
T Consensus 349 ~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 349 FSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988887777666665443
No 136
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.01 E-value=3.1e-09 Score=89.33 Aligned_cols=112 Identities=8% Similarity=-0.023 Sum_probs=85.0
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFV-LSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
+..++.++.|++.||+|||+.+.++.++..+..+ +.. ..++.+.+ ....++.|+..+...+....++.+.+|++ |+
T Consensus 286 ~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (405)
T TIGR00891 286 GAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA-IGANVAVL-GLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA 363 (405)
T ss_pred HHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH-hCCchHHH-HHHHHHHHHHHccchhhHHHHHhhhCCcchhH
Confidence 3467889999999999999998888776533333 333 34454433 33345666666666677778888988775 99
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHH
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILL 116 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~ 116 (235)
++.|+.+....+|..++|.+.+.+.++.| |+..+..
T Consensus 364 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 364 AGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 99999999999999999999999999988 7766554
No 137
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.00 E-value=1.4e-08 Score=85.30 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=92.8
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATS 84 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~ 84 (235)
.+..++.|++.||+|+|+++.++.+...++.++.. ..++.+.+ ++..++.|++.+...+....++.+..+.++++..+
T Consensus 254 ~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (382)
T PRK11128 254 VLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG-STTALPWL-IVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQA 331 (382)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHH
Confidence 45667889999999999999999998888888777 78887755 55588889999888888888888776666888888
Q ss_pred HHH-hhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHH
Q psy6058 85 LGA-CGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQ 123 (235)
Q Consensus 85 ~~~-~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~ 123 (235)
++. ....+|..++|.+++.+.+.+|+ ..++..+++.+.
T Consensus 332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 332 LYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 875 55678889999999999999987 455555554443
No 138
>PRK10504 putative transporter; Provisional
Probab=98.99 E-value=1.6e-08 Score=87.18 Aligned_cols=103 Identities=9% Similarity=-0.007 Sum_probs=80.5
Q ss_pred chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
++.++.|++.||+|+|+++.++.++..++.++.. +. .+.+.+ ....++.|++.+..++.....+.+..|++ ++.
T Consensus 312 ~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 389 (471)
T PRK10504 312 GMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFM-LVALLGWYYLL-PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASS 389 (471)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH-hccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccc
Confidence 4457899999999999999988887777766665 43 222222 33356668888888888888888877765 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
+.++.+....+|..+++.+.+.+.+..|+
T Consensus 390 ~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 390 GNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999998877655
No 139
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.99 E-value=8.3e-09 Score=88.20 Aligned_cols=126 Identities=13% Similarity=-0.091 Sum_probs=77.8
Q ss_pred cccchhhhhHHHhhhh--ch-hHHHHHHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058 3 VPLLLGPVASSFVDKY--GC-RWMTILGGIISGTGFVLS-ATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK- 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~--G~-r~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~- 77 (235)
+..++.++.|+++||+ ++ +.......+...++.... .....+...+ ....++.|++...........+.+.+|+
T Consensus 291 ~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 369 (434)
T PRK11663 291 GGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQ-AACFFTIGFFVFGPQMLIGMAAAECSHKE 369 (434)
T ss_pred HHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHH-HHHHHHHHHHHhhHHHHHHHHHHhcccHh
Confidence 3567889999999998 33 332222211111111111 1012232222 2223333433222222333456787866
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+|+++.|+.+....+|.+++|.+.+++.++.||+..|++.+++.++..+..+
T Consensus 370 ~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 370 AAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred hHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999988877666555433
No 140
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.97 E-value=2.4e-08 Score=86.07 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=103.4
Q ss_pred cccchhhhhHHHhhhhchh--HHHHHHHHHHHHHHHHHHHh--------hchHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058 3 VPLLLGPVASSFVDKYGCR--WMTILGGIISGTGFVLSATV--------ANSIEAQYITFGCIAGCGLSLAYVTAVVSIA 72 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~ 72 (235)
..++|++++|++.||+|.| ++++++.+++.+..+... + .++.+.+++. .++.|+..|..++..=++.+
T Consensus 329 ~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~-~G~~~~~~g~~~~~~f~~~-a~~~G~~~G~~qs~sRs~~~ 406 (477)
T PF11700_consen 329 VAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGL-FGFWPSFFGLKSPWEFWVL-AVLIGLFMGGIQSASRSLFS 406 (477)
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH-HHhhhcccCcccHHHHHHH-HHHHHHHhhhHHHHHHHHHH
Confidence 3568999999999999999 888888877755555444 4 4566656454 78899999999999999999
Q ss_pred hhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhhc
Q psy6058 73 YWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 73 ~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+..|+ +.+...|++.+..-..+.+||.+.+.+.+..| .|..+....++.++.+++.+..
T Consensus 407 ~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 407 RLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred HhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence 98877 58999999999999999999999999999887 7888887777766666665443
No 141
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.94 E-value=3.7e-08 Score=82.62 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=105.1
Q ss_pred chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHH
Q psy6058 6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATS 84 (235)
Q Consensus 6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~ 84 (235)
+...+..++.+|+|.|+.++++.+++++=.++++ ++++.+.+ +..+.+.|+..+.......-++++.+|++ .++...
T Consensus 274 ~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~-~~~~~~~i-~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~ 351 (412)
T PF01306_consen 274 LMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG-FATNPWVI-SLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYL 351 (412)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-T--SHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHH
T ss_pred HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh-hhcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHH
Confidence 4556788999999999999999999999999999 99999866 66699999999999999999999999988 678888
Q ss_pred H-HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 85 L-GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 85 ~-~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
+ .+.+.++|..+.+.++|.+.|+.|.+.+|++.+.+.++..++..+
T Consensus 352 v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 352 VGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 7 578889999999999999999999999999988877766666544
No 142
>PRK10054 putative transporter; Provisional
Probab=98.93 E-value=3.4e-08 Score=83.47 Aligned_cols=120 Identities=11% Similarity=-0.033 Sum_probs=92.5
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
....++.|++.||+++|+.+.++.++..++.+... +. ++.+.+ +...++.|+|.+...+.....+.+..|++ |++.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~ 335 (395)
T PRK10054 258 VSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI-FSGNSLLLW-GMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASY 335 (395)
T ss_pred eeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH-HcchHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhCCcccceeh
Confidence 34457889999999999999999888888877776 54 455534 44477888888877777777888877764 8888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
.+..+ ...+|.++||.+++.+.+++|....|++.+.+.++..++
T Consensus 336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 379 (395)
T PRK10054 336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL 379 (395)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence 88655 556899999999999999999988888766655444444
No 143
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.92 E-value=3.2e-08 Score=85.06 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=87.9
Q ss_pred cccchhhhhHHHhh----hhchhHHHHHH-HHHHHHHHHHHHHhhchHH----------------HHHHHHHHHHHhhhh
Q psy6058 3 VPLLLGPVASSFVD----KYGCRWMTILG-GIISGTGFVLSATVANSIE----------------AQYITFGCIAGCGLS 61 (235)
Q Consensus 3 ~~~i~~~~~g~l~d----r~G~r~~~~~~-~~~~~~~~~~~~~~~~~~~----------------~l~i~~~~l~G~~~g 61 (235)
..++.+|+.|+++| |+|||+.++++ .+...++.+++. ++++.. ..++....+..++.+
T Consensus 51 ~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n 129 (477)
T TIGR01301 51 SGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG-FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANN 129 (477)
T ss_pred HHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH-hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 34688999999999 59999988774 566666666666 655432 122222334455777
Q ss_pred hhhHhHHHHHHhhcccc-h--hHHHHHHHhhHHHHHHHHHHHHHHH--Hhhh-------------CcHHHHHHHHHHHHH
Q psy6058 62 LAYVTAVVSIAYWFDKK-R--TLATSLGACGTGIGTFVYAPLTQYW--IEEY-------------GWRGTILLLAGTFLQ 123 (235)
Q Consensus 62 ~~~~~~~~~~~~~~~~~-r--g~~~~~~~~~~~~g~~l~~~~~~~~--~~~~-------------gw~~~~~~~~~~~~~ 123 (235)
...++..++++|..|++ | +.+.++.+.+.++|+.+++.++++. ...+ +.+..|++.+++.++
T Consensus 130 ~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i 209 (477)
T TIGR01301 130 MLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAI 209 (477)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHH
Confidence 77888888999988764 4 5789999999999999999988764 2111 567888876665555
Q ss_pred HHHHHh
Q psy6058 124 MCICGA 129 (235)
Q Consensus 124 ~~~~~~ 129 (235)
..+...
T Consensus 210 ~~l~t~ 215 (477)
T TIGR01301 210 LTYIAL 215 (477)
T ss_pred HHHHHe
Confidence 444433
No 144
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.91 E-value=5.8e-08 Score=81.73 Aligned_cols=121 Identities=15% Similarity=0.154 Sum_probs=85.7
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-c-c
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV-----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-D-K 77 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~-~ 77 (235)
.++.++.|++.||+|+|+.+..+.++..+..+..... ..+...+ ....++.+++.+...+.....+.+.. + +
T Consensus 258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 336 (390)
T TIGR02718 258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA-WSCSAFGSLITGITSVAIYTAFMRFAGDGD 336 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4567889999999999999888776653332222201 1222222 22234445666777777777776665 4 3
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHH
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCI 126 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~ 126 (235)
++++..++.+....+|..++|.+++.+.+..|++..|++.+++.++..+
T Consensus 337 ~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 337 QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999887665555433
No 145
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.91 E-value=3.5e-08 Score=82.01 Aligned_cols=125 Identities=17% Similarity=0.138 Sum_probs=99.4
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLAT 83 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~ 83 (235)
..+|..+.|++.|| +.|+.+.....+..+..+.+....++.+ +.++.-++.|++.+.........+++..|+.+..+.
T Consensus 260 ~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~-~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~ 337 (394)
T COG2814 260 GFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPA-LALALLFLWGFAFSPALQGLQTRLARLAPDAADLAG 337 (394)
T ss_pred HHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHH
Confidence 46899999999999 9999998888888888777772344444 334445566777666656556666666678899999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
+++...+++|..+|..+++.+.+++|+....++.+++.++.+++.++
T Consensus 338 sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 338 SLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877777666554
No 146
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.91 E-value=1.7e-08 Score=87.18 Aligned_cols=124 Identities=18% Similarity=0.142 Sum_probs=88.6
Q ss_pred hhhhhHHHhhhhc-----hhHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchh
Q psy6058 7 LGPVASSFVDKYG-----CRWMTILGGIISG-TGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRT 80 (235)
Q Consensus 7 ~~~~~g~l~dr~G-----~r~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg 80 (235)
.-+++|.++||++ ||+.++++.++.. ++....+ ..++.....+...++.+++.+...+..-.+..|..+++++
T Consensus 76 ~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~ 154 (468)
T TIGR00788 76 LKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLP-GKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPS 154 (468)
T ss_pred HHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCC
Confidence 3567999999997 7787888877763 4433344 3345444444457888999999999888999988764343
Q ss_pred H---HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 81 L---ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 81 ~---~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
. ..++......+|..+++.+++.+.+.++|+..|++.+++.++..+..+++
T Consensus 155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 155 AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence 3 33344444558999999999999999999999998887666554444443
No 147
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.91 E-value=1.9e-08 Score=83.13 Aligned_cols=104 Identities=8% Similarity=-0.056 Sum_probs=87.1
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS-IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
..++.++.+++.||+|||+.+..+..+..++.++.. +.++ .+.+ ++..++.|++.+...+....++.+..|++ |++
T Consensus 260 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 337 (365)
T TIGR00900 260 ALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG-LTPPNFPLF-LVLWFAIGVGYGPINVPQGTLLQRRVPAELLGR 337 (365)
T ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH-hhchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 457788999999999999999888877777777777 6653 5544 45578889999988888888999988765 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYG 109 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g 109 (235)
+.++.+....+|..++|.+.+.+.+++|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988654
No 148
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.90 E-value=9.1e-09 Score=87.72 Aligned_cols=125 Identities=16% Similarity=0.164 Sum_probs=88.0
Q ss_pred cccchhhhhHHHhhh----hchh-HHHHHHHHHHHHHHHHHHHhhchH-----HHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058 3 VPLLLGPVASSFVDK----YGCR-WMTILGGIISGTGFVLSATVANSI-----EAQYITFGCIAGCGLSLAYVTAVVSIA 72 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~~~l~G~~~g~~~~~~~~~~~ 72 (235)
..++..|+.|+++|| +||| +.++++.....++.+++. ..++. ...+++.+++.+++.+...++..++..
T Consensus 47 ~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 125 (437)
T TIGR00792 47 LDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF-TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVP 125 (437)
T ss_pred HHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH-hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcc
Confidence 357889999999998 6774 467777777777777666 55432 112244467778888777777777777
Q ss_pred hhc--ccchhHHHHHHHhhHHHHHHHHHHHHHHHHh-------hhCcHHHHHHHHHHHHHHHHHH
Q psy6058 73 YWF--DKKRTLATSLGACGTGIGTFVYAPLTQYWIE-------EYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 73 ~~~--~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
+.. +++|++..++...+..+|..+++.+.+.+.. ..+|++.+.+.+++.++..+..
T Consensus 126 ~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~ 190 (437)
T TIGR00792 126 AITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIIC 190 (437)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 764 3469999999888888888777666555542 4589999888777665554443
No 149
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.90 E-value=3.5e-08 Score=83.47 Aligned_cols=119 Identities=13% Similarity=-0.073 Sum_probs=87.8
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
..++.++.|+++||+|+|+.+.++.++..++.++.. .. .+.+.+ +...++.|++.+...+..........+++
T Consensus 264 ~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 341 (406)
T PRK15402 264 LIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAA-LATVISSHAYLWL-TAGLSLYAFGIGLANAGLYRLTLFSSDVS 341 (406)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHcccccHHHH-HHHHHHHHHHHHHHhhhHHHHHhhhcccc
Confidence 456788999999999999999988888777776665 33 233333 44467778888877666655544445667
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~ 124 (235)
||+..++++....+|..+|+.+.+.+.+..++....+...+..++.
T Consensus 342 ~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 342 KGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988878765554444333333
No 150
>PRK15075 citrate-proton symporter; Provisional
Probab=98.90 E-value=4.2e-08 Score=83.86 Aligned_cols=107 Identities=16% Similarity=0.084 Sum_probs=71.5
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHH-HHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFV-LSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r 79 (235)
..++.+++|+++||+|||++++.+.++..+... ..... .++...+ ....++.|++.+...+....++.|.+|++ |
T Consensus 287 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~r 365 (434)
T PRK15075 287 NFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARM-LAVELWLSFLYGSYNGAMVVALTEVMPAEVR 365 (434)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHH-HHHHHHHHHHHHHHHhhHHHHHHHHCCCCcc
Confidence 357788999999999999988776554433221 11101 2233222 23244456666666666667888988775 9
Q ss_pred hHHHHHH-HhhHHHHHHHHHHHHHHHHhhhCcH
Q psy6058 80 TLATSLG-ACGTGIGTFVYAPLTQYWIEEYGWR 111 (235)
Q Consensus 80 g~~~~~~-~~~~~~g~~l~~~~~~~~~~~~gw~ 111 (235)
+++.++. ..+..+++.++|.+.+.+.++.|++
T Consensus 366 g~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 366 TAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred chheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 9999985 4444556788999999999988864
No 151
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.89 E-value=4e-08 Score=82.58 Aligned_cols=122 Identities=11% Similarity=0.014 Sum_probs=81.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHH-hhcccc-hh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIA-YWFDKK-RT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~-~~~~~~-rg 80 (235)
...++.++.|++.||+|+|+.+..+..+..++.++.....++.+.. +...++.+++.....++...... +..+.+ ++
T Consensus 247 ~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (382)
T PRK10091 247 GMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTAS-LIFAFICCAGLFALSAPLQILLLQNAKGGELLG 325 (382)
T ss_pred HHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHH
Confidence 3467889999999999999999888888777765554134444433 33355556655544444443333 333333 44
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhh-hCcHHHHHHHHHHHHHHHHH
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEE-YGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~ 127 (235)
.+ ..+....+|..+||.+++.+.+. .+|++.+.+.+++.++...+
T Consensus 326 ~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 326 AA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 43 34667889999999999999985 68999998877655544444
No 152
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.89 E-value=4.2e-08 Score=77.12 Aligned_cols=122 Identities=14% Similarity=0.184 Sum_probs=84.3
Q ss_pred hhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchh
Q psy6058 8 GPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRT 80 (235)
Q Consensus 8 ~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg 80 (235)
.++.|.+.|++|++.++++|.+...++..+.. .+ .++|.+ ....++.|.+.+...........+.||++||
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~-l~~~~~i~~~~~~~~-~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG 130 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLW-LAVSGRIPSLPVWLM-CLFLFLGGNSSCWFNTASLVTCVRNFPRSRG 130 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHhCccCccchHHH-HHHHHHHcccHHHhhhHHHHHHHHhCccccC
Confidence 58889999999999999999999999988776 43 234444 3334555555544445555555578899999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH-HHHHHHHHHhhcc
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG-TFLQMCICGALMK 132 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~-~~~~~~~~~~~~~ 132 (235)
++.|+.-...++++++...+...+.+...- ..+.+.+. ..++.++..++.+
T Consensus 131 ~vvgilk~~~GLSaai~t~i~~~~f~~~~~-~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 131 TVVGILKGFFGLSAAIFTQIYSAFFGDDPS-SFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred ceehhhhHHHHhHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHHHhhhee
Confidence 999999999999999988887776665323 33333343 3333344444444
No 153
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.89 E-value=7.6e-09 Score=85.61 Aligned_cols=124 Identities=19% Similarity=0.087 Sum_probs=87.1
Q ss_pred ccchhhhhHHHhhhh--chhHHHH-HHHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 4 PLLLGPVASSFVDKY--GCRWMTI-LGGIISGTGFVLSATVANSI--EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~--G~r~~~~-~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
...|++++|+++||+ |||..+- +.++...++.+... .+++. + +..++.+..|+..-+..-.......|..||+
T Consensus 301 gl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w-~~~~~~~~-l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~ 378 (448)
T COG2271 301 GLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYW-LAPNGSYL-LDAILLFIIGFLIYGPQMLIGLAAAEFVPKK 378 (448)
T ss_pred hhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH-cCCCccHH-HHHHHHHHHHHHHhhHHHHHHHHHhccccHh
Confidence 467899999999994 7776554 44445555555555 66544 4 3344455556554443333334555888998
Q ss_pred -hhHHHHHHHhhHHH-HHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 79 -RTLATSLGACGTGI-GTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 79 -rg~~~~~~~~~~~~-g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
-|++.|+...+..+ |..++....+++.|.+||.+.|++..+.+++..++..
T Consensus 379 AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 379 AAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred hccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence 99999999888888 8888888889998999999999987776655555433
No 154
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.85 E-value=9.2e-08 Score=80.91 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=80.2
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhh-chHHHHHHHHH----HHHHhhhhhhhHhHHHHHHhhc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVA-NSIEAQYITFG----CIAGCGLSLAYVTAVVSIAYWF 75 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~-~~~~~l~i~~~----~l~G~~~g~~~~~~~~~~~~~~ 75 (235)
..++.+++|++.||+|+|+.+.++..+..++.+.. + .. ++.+.+ +... +..|++.+...+....++.+.+
T Consensus 259 ~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 336 (402)
T PRK11902 259 TIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLA-VTPKHLWTM-ALAIGIENLCGGMGTAAFVALLMALCNRSF 336 (402)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45778899999999999998877776655554333 3 32 344433 2222 3345555555566666666666
Q ss_pred ccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 76 DKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 76 ~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
|. +..+++.....+|..+++.+++.+.+.+||+..|.+.+++.++..++.
T Consensus 337 ~~---~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 337 SA---TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 54 334555556677887777889999999999999988777766655543
No 155
>PRK10133 L-fucose transporter; Provisional
Probab=98.85 E-value=5.3e-08 Score=83.42 Aligned_cols=121 Identities=14% Similarity=0.075 Sum_probs=92.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA 82 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~ 82 (235)
++.++.++.|++.||+|+|+++..+.++..+++++.. +.++.+ . +...++.|++.+..+|...+...+.+|++.+.+
T Consensus 307 ~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~a 383 (438)
T PRK10133 307 CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-FAGGHV-G-LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYG 383 (438)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCChH-H-HHHHHHHHHHHHHHHHHHHHHHHcccchhhccc
Confidence 4578899999999999999999888877777766665 555533 2 233567899999999999999998888877777
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~ 127 (235)
.++..+ ..+|+.++|.+.+.+.+..| .+..|++..++.+...+.
T Consensus 384 s~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 384 SSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred hhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 777754 44688899999999999887 788887655554444433
No 156
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.84 E-value=5e-08 Score=83.39 Aligned_cols=125 Identities=14% Similarity=0.033 Sum_probs=84.7
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK- 77 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~- 77 (235)
..++.|++|+++||+|+++++.++.+...++........+ +.+.. ....+...++.|......+.++.+.||+
T Consensus 299 ~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~-~~~~~~l~~~~G~gngsvfk~ip~~f~~~ 377 (462)
T PRK15034 299 GAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAF-YAVFMGLFLTAGLGSGSTFQMIAVIFRQI 377 (462)
T ss_pred HHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhcccchHHHHhhHHHHhhh
Confidence 4577899999999999999999998877776643221222 33322 3323333344444445555566665553
Q ss_pred ---------------------chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHh
Q psy6058 78 ---------------------KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 78 ---------------------~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~ 129 (235)
+-|.+.|+......+|+++.|.+.+...+..| +...|+...+..+++.++.+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 378 TIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred hhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999988888877654 77788877776665555543
No 157
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.83 E-value=1.1e-07 Score=81.28 Aligned_cols=126 Identities=14% Similarity=0.037 Sum_probs=71.8
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH-h--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT-V--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r 79 (235)
..++.++.|+++||+|||+.+.++.++..+....... . ..+.... +....+.+++.+...+....++.|++|++ |
T Consensus 292 ~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r 370 (432)
T PRK10406 292 FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA-FGLVMCALLIVSFYTSISGILKAEMFPAQVR 370 (432)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 3567788999999999999887766554333322210 1 1222222 12112222333333445567788999886 9
Q ss_pred hHHHHHHHhhHH-HHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhhc
Q psy6058 80 TLATSLGACGTG-IGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 80 g~~~~~~~~~~~-~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+++.|+.+.... +++...|.+.+.+ +..| |...+++.++..++..+..+++
T Consensus 371 ~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 371 ALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred chhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999765444 3344567776644 5555 5555555555555444444443
No 158
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.82 E-value=1.7e-07 Score=79.24 Aligned_cols=118 Identities=13% Similarity=0.078 Sum_probs=85.7
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHH-HHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGII-SGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~ 82 (235)
..++.++.+++.||.+++ .++.+..+ .....++.. ..++.+.+ ....++.|++.+...+....++.+..|++++++
T Consensus 265 ~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~-~~~~~~~~-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (394)
T PRK10213 265 SFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTL-WGSDKIVA-TGVAIIWGLTFALVPVGWSTWITRSLADQAEKA 341 (394)
T ss_pred HHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHH
Confidence 456777888888886544 43444444 333344444 55566545 445778899998888888888888778777788
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~ 124 (235)
.++......+|..+|+.+++.+.+..|++..++..+++.++.
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~ 383 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT 383 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence 888888889999999999999999999988888766544333
No 159
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.82 E-value=1.4e-07 Score=78.80 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=77.1
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccch
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKR 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~r 79 (235)
..++.++.|++.||+|+|+.+..+..+..++.+++. ... +.+..++...++.|++.+...+.......+.+|+++
T Consensus 255 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 333 (385)
T TIGR00710 255 MIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE-ITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVA 333 (385)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 467889999999999999998888877777766655 321 222233444567788888888888788888788889
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHH
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTIL 115 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~ 115 (235)
+++.++.+.....++.+++.+.+.+.+..+|...+.
T Consensus 334 g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 369 (385)
T TIGR00710 334 GTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS 369 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence 999999877766555555555555444444544443
No 160
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.82 E-value=2.1e-07 Score=78.61 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=86.5
Q ss_pred hhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-chHHHHHHH---HHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 7 LGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-NSIEAQYIT---FGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 7 ~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~---~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
.-.+.+++..|+|.+++++++.+..++=..+.+ .. ++.+..++. ..++.|+..+..+.....++.+..|++ |++
T Consensus 259 ~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a-~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at 337 (400)
T PF03825_consen 259 FFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA-YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRAT 337 (400)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHH
Confidence 345778999999999999999999999988888 65 454433222 134689999999999999999999887 999
Q ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHhhhCcHHH
Q psy6058 82 ATSLGAC-GTGIGTFVYAPLTQYWIEEYGWRGT 113 (235)
Q Consensus 82 ~~~~~~~-~~~~g~~l~~~~~~~~~~~~gw~~~ 113 (235)
+++++.. ..++|..+|..++|++.+++|-+..
T Consensus 338 ~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~ 370 (400)
T PF03825_consen 338 AQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM 370 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence 9999765 5689999999999999998875543
No 161
>KOG0253|consensus
Probab=98.77 E-value=1.5e-08 Score=82.60 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=84.6
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--chHHH-HHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--NSIEA-QYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~-l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
+-|.++.+++.||+|||+.+..+.++++++.++.. .+ +|... ++...|++ ..+.+...+.|.-|.+|.. |+
T Consensus 395 fPGlLIt~~iverlGRKkTMal~l~~f~iflfll~-~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 395 FPGLLITGVIVERLGRKKTMALSLILFGIFLFLLT-TCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred CCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchhhhh
Confidence 45788999999999999999999999998887776 55 33322 22233544 3445566677888999997 99
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
++.|....+..+|+++.|.++ +.....-..+..+.+.++++..++.
T Consensus 470 tgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIav 515 (528)
T KOG0253|consen 470 TGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAV 515 (528)
T ss_pred cchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHh
Confidence 999999999999999999998 3333333344455555555555553
No 162
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.75 E-value=3.7e-08 Score=83.66 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=73.2
Q ss_pred ccchhhhhHHHhhhhchhHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 4 PLLLGPVASSFVDKYGCRWM-TILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
..++.+++|+++||+++|+. +....++..++.++.. ...+.... +...++.+++.....+.......+.+|. +|++
T Consensus 292 ~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 369 (412)
T TIGR02332 292 TIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS-ATDHNLIQ-LLGIIMASMGSFSAMAIFWTTPDQSISLQARAI 369 (412)
T ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH-hcCCHHHH-HHHHHHHHHHhhhhhhHHHhhcccccchHHHHH
Confidence 45678999999999997764 4444444444433332 22232211 2112222333322223333344556666 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGT 120 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~ 120 (235)
+.|+.+....+|.+++|.+.+.+.+..| |++.+++.+++
T Consensus 370 a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 370 AIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999999999999875 99988876554
No 163
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.75 E-value=2.9e-08 Score=82.16 Aligned_cols=123 Identities=17% Similarity=0.138 Sum_probs=94.4
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-------hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-------SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
.+.-+++|+++||+|.++++++....++++..+.. ... +.. .++...+..++..|......+..+...||+
T Consensus 268 ~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~-~~~~~~~~~~~~~-~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~ 345 (417)
T COG2223 268 ALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLS-LFLTGFGHGGSFV-VFVAVFLALFVFAGLGNGSVFKMIPVIFPK 345 (417)
T ss_pred HHHHhccchhhhhccchhHHHHHHHHHHHHHHHHH-ccccccccCcchH-HHHHHHHHHHHHhccCcchheeechHHHHh
Confidence 45678999999999999999999999988888777 442 222 222223333444444445566778888889
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHh
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~ 129 (235)
+-|.+.|+.....++|++..|...+...+..| +...|++...+.+++++..+
T Consensus 346 ~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~ 398 (417)
T COG2223 346 ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW 398 (417)
T ss_pred hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888 88888888877766666543
No 164
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.75 E-value=1.5e-07 Score=79.94 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=89.8
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA 82 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~ 82 (235)
+..++.++++++.||+++|+++.+..++..+++++.. ..++...+ .+ .++.|++.+..+|.......+..+++...+
T Consensus 281 ~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~-~~~~~~~~-~~-l~~~glf~s~~fp~i~sl~~~~~g~~~~~~ 357 (410)
T TIGR00885 281 IFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI-FAGGHVGL-YC-LTLCSAFMSLMFPTIYGIALKGLGQDTKYG 357 (410)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCChHHH-HH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3568899999999999999999898888888888887 66665433 33 566788899999999998888888775444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhh------CcHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEY------GWRGTILLLAGTFLQM 124 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~------gw~~~~~~~~~~~~~~ 124 (235)
.+...++ .+|++++|++.+.+.|.. +.+..|++...+.+..
T Consensus 358 s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 358 AAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 4444443 399999999999999964 4777887655544433
No 165
>KOG3762|consensus
Probab=98.74 E-value=6.7e-08 Score=82.22 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=106.8
Q ss_pred chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHH
Q psy6058 6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATS 84 (235)
Q Consensus 6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~ 84 (235)
+.-++.+++..|+|+-+++..++....+=.+..+ ...|.|+. +-.-++.|+..+..|..+.+|++...|++ |.++.+
T Consensus 421 ~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S-~L~n~W~v-LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~ 498 (618)
T KOG3762|consen 421 LFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS-YLQNPWMV-LPIEILQGITHALIWAAIISYASHVAPPGLRATAQG 498 (618)
T ss_pred HHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH-HhcCchhe-eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence 4456788999999999999999999999999888 89999976 44489999999999999999999988776 999999
Q ss_pred HH-HhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 85 LG-ACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 85 ~~-~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+. ....++|-.+|.++++.+...+|-+..|.+.++.+++.+++...+
T Consensus 499 l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 499 LLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 85 455688999999999999999999999999888777766665543
No 166
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.74 E-value=1.1e-06 Score=71.84 Aligned_cols=121 Identities=12% Similarity=0.145 Sum_probs=80.7
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHH-HHHhhc----ccc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVV-SIAYWF----DKK 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~-~~~~~~----~~~ 78 (235)
.++..++.|.++||+|||+..+.-+++..+++++.. .++++.+ ++.|++.|++....+...-+ ++.|+- |++
T Consensus 82 s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~--~~~~~~L-~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~ 158 (354)
T PF05631_consen 82 SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH--SSNYPVL-LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE 158 (354)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh--ccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 356788899999999999999999999999998665 6777756 66699999999999888877 445653 222
Q ss_pred -hhHHHHHHH-hhHHHHHHHHHHHHHHHHhhhCc--HHHHHHHHHHHHHHHHH
Q psy6058 79 -RTLATSLGA-CGTGIGTFVYAPLTQYWIEEYGW--RGTILLLAGTFLQMCIC 127 (235)
Q Consensus 79 -rg~~~~~~~-~~~~~g~~l~~~~~~~~~~~~gw--~~~~~~~~~~~~~~~~~ 127 (235)
.+...+... ...++-.++...++.++.+..+. .++|.....+.++..++
T Consensus 159 ~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~ 211 (354)
T PF05631_consen 159 WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL 211 (354)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 222222222 22233334445556666666554 66776655554444443
No 167
>TIGR00895 2A0115 benzoate transport.
Probab=98.73 E-value=1e-07 Score=79.76 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=75.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
+..++.++.|+++||+|+|..+. +.++..+...+......+.+.+ +...++.|++.+...+....++.+.+|++ |++
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 374 (398)
T TIGR00895 297 GGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTLFSPTLL-LLLGAIAGFFVNGGQSGLYALMALFYPTAIRAT 374 (398)
T ss_pred HHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 34678899999999999995444 4444333333333024555544 44477889999888888889999988775 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYW 104 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~ 104 (235)
+.|+......+|..++|.+.+++
T Consensus 375 ~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 375 GVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhc
Confidence 99999999999999999998875
No 168
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.72 E-value=1.5e-07 Score=89.60 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=89.8
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
+.+++++++|++.||+++++.+.++.++.+++.++.. +..+.+.+ ++..++.|++.+...+....++.+..|++ ||+
T Consensus 281 g~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~ 358 (1146)
T PRK08633 281 GIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP-TAPSLASV-LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGK 358 (1146)
T ss_pred HHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhh
Confidence 3467889999999999999988888888888888877 67776655 44478889988888888888888887765 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTF 121 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~ 121 (235)
+.++.++...+|.++++.+++.+.. .+++...+++.+.+.
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 9999999999998888777665543 234555555544433
No 169
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.71 E-value=2.7e-07 Score=78.11 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=75.5
Q ss_pred hHHHhh-hhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHHHHHh
Q psy6058 11 ASSFVD-KYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATSLGAC 88 (235)
Q Consensus 11 ~g~l~d-r~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~~~~~ 88 (235)
.+++.| |++.++.+..+.++..++.++.. ..++.+.+ +...++.|++.+...+....++.+..|+ +||++.|+++.
T Consensus 263 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~ 340 (400)
T PRK11646 263 IARWSEKRFRLEHRLMAGLLIMSLSMFPIG-MVSNLQQL-FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRL 340 (400)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHH
Confidence 345554 56666677778878888877777 77777644 4446677888887778888888888876 59999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q psy6058 89 GTGIGTFVYAPLTQYWIEEY 108 (235)
Q Consensus 89 ~~~~g~~l~~~~~~~~~~~~ 108 (235)
...+|..++|.+.+.+.++.
T Consensus 341 ~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 341 GLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHhcccchHHHHHHH
Confidence 99999999999999998874
No 170
>PRK09848 glucuronide transporter; Provisional
Probab=98.70 E-value=6.3e-07 Score=76.94 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=82.6
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc----
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK---- 77 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~---- 77 (235)
.+++.++++++.||+|+|+.+.++.++..++.++.. +.+ +.+.+ +...++.|+|.+...+...+..++..+.
T Consensus 277 ~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~-~~~~~~~~~~-~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~ 354 (448)
T PRK09848 277 TVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF-WVSVWSLPVA-LVALAIASIGQGVTMTVMWALEADTVEYGEYL 354 (448)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HcCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 356788899999999999999999988888877776 543 44433 3446778899888888888877776542
Q ss_pred ----chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 78 ----KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 78 ----~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
++|...|+.+....+|..+++.+.+.+.+..|+
T Consensus 355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 258889999999999999999999888766554
No 171
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.70 E-value=5.6e-07 Score=75.79 Aligned_cols=125 Identities=17% Similarity=0.095 Sum_probs=78.2
Q ss_pred chhhhh-HHHhhhhchhHHHHHHHHHH-HHHHHHHHH--hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 6 LLGPVA-SSFVDKYGCRWMTILGGIIS-GTGFVLSAT--VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 6 i~~~~~-g~l~dr~G~r~~~~~~~~~~-~~~~~~~~~--~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
+.+|+. ++..||+|||+..+++..+. .++...... ...+...+.+...++.++..+...+..-.+..+..+++ ++
T Consensus 53 l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~ 132 (390)
T TIGR02718 53 LWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLA 132 (390)
T ss_pred HHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhh
Confidence 345555 34577789888876665332 222222220 12221212233234444555556666666666666554 68
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
...+....+..+|..+++...+++.+++|||..|++.+++.++..+..++
T Consensus 133 ~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 133 KGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999988899999999999999988776655554443
No 172
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.66 E-value=3.2e-07 Score=78.14 Aligned_cols=116 Identities=8% Similarity=-0.034 Sum_probs=72.9
Q ss_pred cccchhhhhHHHhhhhch-hHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhh-------
Q psy6058 3 VPLLLGPVASSFVDKYGC-RWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYW------- 74 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~------- 74 (235)
...++++++|+++||+|+ |+++.++.++..++..+.. +.++++.++ ..+++.|++.+...+...+....+
T Consensus 50 ~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~ 127 (418)
T TIGR00889 50 AAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA-QVTTPAGMF-PVLLANSLAYMPTIALTNSISYANLPQAGLD 127 (418)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-HhcCHHHHH-HHHHHHHHHHccHHHHHHHHHHHHHhhcCCC
Confidence 457899999999999964 7788888888877777777 778887664 447888887665555444432111
Q ss_pred -ccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 75 -FDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 75 -~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
... .|.+..| .+|.+++|.+++.+.....|.. |++.++..++..++
T Consensus 128 ~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~ 175 (418)
T TIGR00889 128 VVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVF 175 (418)
T ss_pred chhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHH
Confidence 111 2334333 3677788888777743333543 44444444433333
No 173
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.65 E-value=1.8e-07 Score=80.06 Aligned_cols=124 Identities=10% Similarity=0.040 Sum_probs=74.1
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHH---HHHHHHHHhh--chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISG---TGFVLSATVA--NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK- 77 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~---~~~~~~~~~~--~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~- 77 (235)
..++.+++|+++||+++++....+..+.. ++.++.. .. .+.+.. ....++.|++.............+.+|+
T Consensus 300 ~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 377 (438)
T TIGR00712 300 GIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-MNPAGNPLVD-MICMIVIGFLIYGPVMLIGLHALELAPKK 377 (438)
T ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-hcCCCchHHH-HHHHHHHHHHHccHHHHHHHHHHHhcChh
Confidence 45788899999999964432222332221 2222222 21 233322 2223334443222212222345677776
Q ss_pred chhHHHHHHHhhHHHHH-HHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 78 KRTLATSLGACGTGIGT-FVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~-~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+|+++.|+.+....+|+ +++|.+.+.+.++.||...+++.+++.++..+..+
T Consensus 378 ~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 430 (438)
T TIGR00712 378 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 430 (438)
T ss_pred heeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 59999999988777764 68999999999999999999887765555544433
No 174
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.65 E-value=2.2e-07 Score=77.20 Aligned_cols=123 Identities=17% Similarity=0.112 Sum_probs=97.0
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
+.+++++++|++.||+|.|+++.++.++..+.++... +....... ..+.++.|...|..+...=++.++..|+ +-++
T Consensus 300 vA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~-~~~~~~~f-~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~ 377 (438)
T COG2270 300 VAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI-FLEGELDF-WILGLLVGTSLGGAQASSRSYLARLVPKGKEGR 377 (438)
T ss_pred HHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH-HccccHHH-HHHHHHHHHhcchHHHHHHHHHHHhCCCccccc
Confidence 3468999999999999999999999998888877666 55443333 4447888999999999999999998877 4889
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~ 127 (235)
..|+++.....++.++|.+.+.+.+..| -|..+....++..+.++.
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~ 424 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL 424 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence 9999999999999999999999988765 455554444444433333
No 175
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.63 E-value=6.6e-07 Score=74.96 Aligned_cols=121 Identities=17% Similarity=0.038 Sum_probs=79.8
Q ss_pred cchhhhhHHHhhhhch---hHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058 5 LLLGPVASSFVDKYGC---RWMTIL-GGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~---r~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r 79 (235)
..+.+..++++||..| |+.... ..++..++..... ...+.... +....+.|++....++....+.+|.+|++ |
T Consensus 237 ~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r 314 (368)
T TIGR00903 237 LAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA-FELNRLAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELH 314 (368)
T ss_pred HHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HccccHHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhc
Confidence 3455556788888754 333232 3333444444444 44444323 33344556666666677778889999886 9
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+++.|+.+....+|+.++|.+.+.+.. +.+..|.+.++..++..+..+
T Consensus 315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 315 GKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887773 677788777766555555443
No 176
>KOG4686|consensus
Probab=98.62 E-value=3.7e-07 Score=72.26 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=80.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGT-GFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
+.++.+|+.|.++||+|++...+.+.++..+ +..... ++. +.-++. ..+.|++...........++...|++ .|
T Consensus 312 Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~-Ft~--lsPy~~-m~~lGLsysllAcslWP~va~~vpE~qLG 387 (459)
T KOG4686|consen 312 ISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLF-FTF--LSPYTS-MTFLGLSYSLLACSLWPCVASLVPEEQLG 387 (459)
T ss_pred hhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHH-hhh--ccHHHH-HHHHhhhHHHHHHHHhhhhhhhCCHHHhc
Confidence 3567899999999999999877766655444 433333 321 112234 45568777766555667777777775 99
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhC---cHHHHHHHHH
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYG---WRGTILLLAG 119 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g---w~~~~~~~~~ 119 (235)
++.|..+...++|-++.|.+++++.++.| |--+|.+...
T Consensus 388 Taygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~ 429 (459)
T KOG4686|consen 388 TAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG 429 (459)
T ss_pred chHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence 99999999999999999999999998765 4444444333
No 177
>PRK09669 putative symporter YagG; Provisional
Probab=98.61 E-value=1.9e-06 Score=73.86 Aligned_cols=105 Identities=8% Similarity=-0.019 Sum_probs=78.0
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-------
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV-ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD------- 76 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~------- 76 (235)
.++.+++++++||+|+|+.+.++.++..++.+..... .++.+.+ ++..++.|++.+...+...+++++..+
T Consensus 278 ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G 356 (444)
T PRK09669 278 LFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLI-FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSG 356 (444)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 4677889999999999999988887666544333203 2455434 444678899999888888888887653
Q ss_pred cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 77 KK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
++ .|...++...+..+|.++++.+.+.+.+..|+
T Consensus 357 ~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 357 RRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 12 45677888888899999999999998877665
No 178
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.61 E-value=3.7e-07 Score=75.82 Aligned_cols=110 Identities=15% Similarity=0.012 Sum_probs=72.3
Q ss_pred cccchhhhhHHHhhhhc-hhHH-HHHHH-HHHHHHHHHHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 3 VPLLLGPVASSFVDKYG-CRWM-TILGG-IISGTGFVLSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G-~r~~-~~~~~-~~~~~~~~~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
...++.++.|++.||.+ +|+. +.... ....++..... . ..+.+.. +...++.|+......+....++.+.+|+
T Consensus 264 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 341 (379)
T TIGR00881 264 GGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW-LNPAANPLMD-LICLFALGFLVYGPQMLIGVIASELAPK 341 (379)
T ss_pred HcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh-cCcchhHHHH-HHHHHHHHHHHhhhhHHHHHHHHHhcCc
Confidence 35678899999999864 3332 22222 22222222222 2 2233323 3335556665544445555677888876
Q ss_pred c-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHH
Q psy6058 78 K-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTI 114 (235)
Q Consensus 78 ~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~ 114 (235)
+ |+++.++.+....+|..++|.+.+.+.+++||++.|
T Consensus 342 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 342 KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred chhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 5 999999999999999999999999999999998754
No 179
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.60 E-value=4.5e-07 Score=78.36 Aligned_cols=103 Identities=20% Similarity=0.241 Sum_probs=81.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK- 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~- 77 (235)
+..++.++.|++.||+|||+.+.++.++..++.++.. +. .+.+.+ +...++.|++.+...++......+..|+
T Consensus 303 ~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~g~g~~~~~~~~~~~~~~~~~~~ 380 (485)
T TIGR00711 303 APMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRA-FTFTPDTPFLAI-ALPQFIRGFGMGCFFMPLTTIALSGLPPH 380 (485)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh-ccCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 3467889999999999999999999888888877665 32 233433 3446778999888877777666666665
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEE 107 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~ 107 (235)
+|+.+.++.+....+|+.+++.+.+.+.++
T Consensus 381 ~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 381 KIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999988765
No 180
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.59 E-value=1.7e-06 Score=74.86 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=78.1
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc---
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD--- 76 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~--- 76 (235)
..++.++++++.||+|+|+.+.++.++.+++.+..... ..+.+.+ ++..++.|++.+...+...+++++..+
T Consensus 279 ~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~l~g~~~~~~~~~~~am~ad~id~~e 357 (473)
T PRK10429 279 NLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLI-VIAGILLNIGTALFWVLQVIMVADTVDYGE 357 (473)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 45778899999999999999988887766665554311 2334433 444677788888888888888887643
Q ss_pred ----cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 77 ----KK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 77 ----~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
++ .|...+......-+|..+++.+.+.+.+..|+
T Consensus 358 ~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 358 YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 45678888888999999999999998876554
No 181
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.59 E-value=4e-07 Score=86.82 Aligned_cols=119 Identities=12% Similarity=-0.057 Sum_probs=87.3
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--------------------chHHHHHHHHHHHHHhhhhh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--------------------NSIEAQYITFGCIAGCGLSL 62 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~i~~~~l~G~~~g~ 62 (235)
++++++++.|+++++.++++.+..+.++..++.+... +. .+.+.+ ++..++.|++.+.
T Consensus 273 g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~ 350 (1140)
T PRK06814 273 GVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLA-FASSSVPAEPAQLKSILVFLSKRHGWRI-LIDLFGLAAAGGL 350 (1140)
T ss_pred HHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHH-hcccccccccccccchhhhhcccccHHH-HHHHHHHHHHHHH
Confidence 4578889999999888777666666655555544333 32 455544 4457778999988
Q ss_pred hhHhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHHHH
Q psy6058 63 AYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTFLQ 123 (235)
Q Consensus 63 ~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~~~ 123 (235)
..++..+++.+..|++ ||+++|+.++...+|..+++.+.+.+.+ ..++...+++.+++.++
T Consensus 351 ~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~ 413 (1140)
T PRK06814 351 YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI 413 (1140)
T ss_pred hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 8888888888888775 9999999999999999999999888874 44666666655544333
No 182
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.58 E-value=1e-06 Score=76.78 Aligned_cols=113 Identities=7% Similarity=0.020 Sum_probs=83.1
Q ss_pred HHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 12 SSFVDKYGCRWMTILGGIISGTGFVLSATVANS---------IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 12 g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
+++.+|++....+.+|.++.+++.+... ...+ .+++ +...++.|+|+....+....++.+..|++ ||+
T Consensus 341 ~~l~~r~~~~~~~~~G~~l~~l~f~~l~-~~~~~~~~~~~vs~~~~-~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~ 418 (500)
T PRK09584 341 NKMGDRLPMPHKFAIGMVLCSGAFLVLP-LGAKFANDAGIVSVNWL-IASYGLQSIGELMISGLGLAMVAQLVPQRLMGF 418 (500)
T ss_pred HHhCcCCCcHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCccCHHHH-HHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHH
Confidence 5556666677888999999999988877 5544 3333 55689999999999999999999998886 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHh----------hhCcHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIE----------EYGWRGTILLLAGTFLQMCI 126 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~----------~~gw~~~~~~~~~~~~~~~~ 126 (235)
++|++.....+|..++..+...... ..+..+.|...++..++..+
T Consensus 419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~ 473 (500)
T PRK09584 419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAV 473 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999888887887777666643221 11356777776665443333
No 183
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.58 E-value=5.6e-07 Score=78.34 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=81.6
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r 79 (235)
..+++++.|++.||+|+|+.+..+.++..++.++.. .. ++.+.. ....++.|+|.|...++....+.+..|+ ++
T Consensus 308 ~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~-~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~ 385 (495)
T PRK14995 308 SGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLA-MTDFSTQQWQA-WGLMALLGFSAASALLASTSAIMAAAPPEKA 385 (495)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH-HhcCCCchHHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhc
Confidence 467889999999999999999989888877776554 32 344433 4447788999998888787777777666 59
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEE 107 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~ 107 (235)
+.+.++++....+|..+|+.+.+.+.++
T Consensus 386 g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 386 AAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888653
No 184
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.58 E-value=7.6e-07 Score=75.20 Aligned_cols=122 Identities=10% Similarity=-0.020 Sum_probs=87.5
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc--hhH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK--RTL 81 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~--rg~ 81 (235)
..+++++.+++.||+++++++..+.+ ..+..+... +.++++.. +...++.|++.+...++....+.+..|++ +|+
T Consensus 254 ~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~-~~~~~~~~-~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~ 330 (393)
T PRK11195 254 IAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMA-LQHSLLPA-YPLLILIGALGGFFVVPMNALLQHRGHVLVGAGH 330 (393)
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHH-HHhHHHHH-HHHHHHHHHhhhhhhhhHHHHHHhhCcccccchh
Confidence 45778888899999998888777753 344444445 55665533 44466778888887777777777766654 699
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+.++.+....+|..++..+.+.+ +.+|-+..+++.+...++...+.+
T Consensus 331 ~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 331 SIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888754 677888777776655544444433
No 185
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.55 E-value=1.4e-06 Score=75.42 Aligned_cols=115 Identities=12% Similarity=-0.004 Sum_probs=88.4
Q ss_pred HHhhh-hchhHHH--HHHHHHHHHHHHHHHHh---------hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058 13 SFVDK-YGCRWMT--ILGGIISGTGFVLSATV---------ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 13 ~l~dr-~G~r~~~--~~~~~~~~~~~~~~~~~---------~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r 79 (235)
++.+| .+++... .+|.++.+++.+..+ + ..+++++ +...++.|+|.....+....++++..|++ |
T Consensus 338 ~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~-~~~~~~~~~~~~s~~~~-i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~ 415 (475)
T TIGR00924 338 RLGRKGKDPTTPLKFTLGMLFCGASFLTFA-ASIWFADAGGLTSPWFM-VLIYLFQTLGELMISPLGLSWWTKIAPQRLM 415 (475)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCccCHHHH-HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 44444 3333433 778888888877766 4 3467755 55688999999999999999999998886 9
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
|+.+|++..+..+|..+++.+.....+..+|.+.|...++..++..++.+
T Consensus 416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (475)
T TIGR00924 416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMA 465 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988877777888888777766555544443
No 186
>PRK11043 putative transporter; Provisional
Probab=98.55 E-value=3e-06 Score=71.56 Aligned_cols=108 Identities=13% Similarity=-0.005 Sum_probs=74.2
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--h--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccch
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--V--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKR 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~r 79 (235)
..++.++.+++.||+|+|+.+..+.....++.+.... . .++.+.+ +....+.|++.+..++.......+..|+++
T Consensus 251 ~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (401)
T PRK11043 251 FLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPL-LIPFCVMAAANGAIYPIVVAQALRPFPQAT 329 (401)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhCcccC
Confidence 3466777889999999998766655544444332220 1 2344333 333556688888888877777767778789
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHH
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRG 112 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~ 112 (235)
|++.++++.....+..+++.+.+.+.+......
T Consensus 330 g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 330 GKAAALQNTLQLGLCFLASLLVSALISTPLLTT 362 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence 999999998888888888888888876533333
No 187
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.54 E-value=1e-06 Score=73.10 Aligned_cols=104 Identities=9% Similarity=0.002 Sum_probs=78.7
Q ss_pred cccchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-cc-ch
Q psy6058 3 VPLLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DK-KR 79 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~-~r 79 (235)
+..++.++.|++.||+ +||+.+.++.++..++.++.. +..+.... . ..++.|++.+..++.....+.+.. ++ ++
T Consensus 244 ~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~ 320 (355)
T TIGR00896 244 AQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL-FAPMHGLW-A-WALVLGLGQGGAFPLALTLIGLRSRQAAQA 320 (355)
T ss_pred HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH-HhhhhHHH-H-HHHHHHHhhhhHhHHHHHHHHHhccCHHHH
Confidence 3568899999999999 566777777777777776666 55443322 2 246779999888887777666544 34 47
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYG 109 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~g 109 (235)
+...++.+....+|..++|.+.+.+.++.|
T Consensus 321 g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 321 AALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888999888888999999999999998876
No 188
>KOG0569|consensus
Probab=98.54 E-value=2.3e-06 Score=73.33 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=86.9
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---ch-H--HH--HHHHHHHHHHhhhhhhh-HhHHHHHHhh
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NS-I--EA--QYITFGCIAGCGLSLAY-VTAVVSIAYW 74 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~-~--~~--l~i~~~~l~G~~~g~~~-~~~~~~~~~~ 74 (235)
..+.++++.++.||+|||+.++++..++.+..+++. .. .+ . |. ..++..++..++.+... |...-+.+|.
T Consensus 318 ~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~-~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aEL 396 (485)
T KOG0569|consen 318 NLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMS-IALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAEL 396 (485)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHh
Confidence 457788999999999999999999999888887776 33 11 1 21 12343444455554443 4445677899
Q ss_pred cccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 75 FDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 75 ~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+|.+ |..+.++......++.++.......+.+.+|- +.|+...+.+++..+..+
T Consensus 397 f~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 397 FPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLY 451 (485)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Confidence 9886 99999999999999988887877777777775 555555555544444433
No 189
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.53 E-value=7.4e-07 Score=76.85 Aligned_cols=125 Identities=13% Similarity=0.002 Sum_probs=74.4
Q ss_pred cccchhhhhHHHhhhhchhHH--------HHHHHHHHHHH--HHHHHHh-hchHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWM--------TILGGIISGTG--FVLSATV-ANSIEAQYITFGCIAGCGLSLAYVTAVVSI 71 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~--------~~~~~~~~~~~--~~~~~~~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~ 71 (235)
+..++.++.|+++||+++|+. +..+......+ .+... . ..+.+.. +....+.+.+.+...+......
T Consensus 309 ~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 386 (465)
T TIGR00894 309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP-YLSAAFYLT-IIILTLANAVSSGPLAGVLINS 386 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchHHH-HHHHHHHHHHhhhhhhhhhhch
Confidence 346788999999999865421 11111111111 11112 2 2233322 3323333444443444433444
Q ss_pred HhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhh---CcHHHHHHHHHHHHHHHHHHh
Q psy6058 72 AYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEY---GWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 72 ~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~---gw~~~~~~~~~~~~~~~~~~~ 129 (235)
.+..|+.+|.+.++.+....+|+.++|.+.+.+.+.. +|+..|++.++..++..++..
T Consensus 387 ~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 387 LDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 5667778999999999999999999999999887653 378888877766665554433
No 190
>KOG2816|consensus
Probab=98.51 E-value=1.4e-06 Score=74.76 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=96.6
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh--hhhhhhHhHHHHHHhhccc-chh
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGC--GLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~--~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
..+.+++.|.++||+|||..+....+...+..++.. +.. +| .++ +.++ +.+..+....+++++...+ +|.
T Consensus 75 ~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~-~~~-~~-~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~ 147 (463)
T KOG2816|consen 75 TLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLL-FQG-YW-FFL----LLGLSGGFSAIFSVGFAYVADISSEEERS 147 (463)
T ss_pred HHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHH-HHH-HH-Hhh----hcccccchhhhhhhhhhheeeccchhHHH
Confidence 467889999999999999999999999998888877 544 33 322 3333 3444566677888887655 499
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
...|+....+..+..++|.+++++....|.-..|.+.++..++..+...+.
T Consensus 148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~ 198 (463)
T KOG2816|consen 148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLF 198 (463)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998888777776665543
No 191
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.51 E-value=3.6e-06 Score=67.02 Aligned_cols=115 Identities=24% Similarity=0.336 Sum_probs=86.3
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc--chh
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS--IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK--KRT 80 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~--~rg 80 (235)
.++.++.|.+.||+|||+.+..+.....++.+... +..+ .+.+ +..|++.|++.+...+....++.++.|+ +|+
T Consensus 53 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (338)
T COG0477 53 AIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLA-LAPNVGLALL-LILRLLQGLGGGGLLPVASALLSEWFPEATERG 130 (338)
T ss_pred HHHhhhhhhccccccchHHHHHHHHHHHHHHHHHH-hCccchHHHH-HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHH
Confidence 45568999999999999888888876556555555 5554 5544 6668888999998889999999999986 688
Q ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHhh--hCcHHHHHHHHHHH
Q psy6058 81 LATSLGAC-GTGIGTFVYAPLTQYWIEE--YGWRGTILLLAGTF 121 (235)
Q Consensus 81 ~~~~~~~~-~~~~g~~l~~~~~~~~~~~--~gw~~~~~~~~~~~ 121 (235)
...+.... ...+|..+++.+++.+... .+|+..+.......
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 131 LAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 88888777 5778888888776666544 57888655544433
No 192
>PRK09669 putative symporter YagG; Provisional
Probab=98.50 E-value=1.1e-06 Score=75.39 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=79.7
Q ss_pred ccchhhhhHHHhhh----hchh-HHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058 4 PLLLGPVASSFVDK----YGCR-WMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIA 72 (235)
Q Consensus 4 ~~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~ 72 (235)
-++..|+.|+++|| +||| +.++++....+++.++.. ..++ .+.. .+..++.+.+......+..++.+
T Consensus 58 dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f-~~p~~~~~~~~~~~-~~~~~l~~~~~t~~~ip~~al~~ 135 (444)
T PRK09669 58 DAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTF-YTPDFGATGKIIYA-CVTYILLSLVYTAINVPYCAMPG 135 (444)
T ss_pred HHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHH-hCCCCCcchHHHHH-HHHHHHHHHHHHhhcchHHHhHH
Confidence 46788999999999 6764 556677777767665544 4432 2223 33345556666667777778888
Q ss_pred hhcc--cchhHHHHHHHhhHHHHHHHHHHHHHHHHh-------hhCcHHHHHHHHHHHHHHHHHH
Q psy6058 73 YWFD--KKRTLATSLGACGTGIGTFVYAPLTQYWIE-------EYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 73 ~~~~--~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
++.+ ++|++..++...+..+|..+++.+...+.. ..||+..+.+.+++.++..+..
T Consensus 136 ~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~ 200 (444)
T PRK09669 136 AITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCC 200 (444)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 8763 459988888877777777777665444332 2467777776666555444433
No 193
>KOG2504|consensus
Probab=98.50 E-value=3.6e-07 Score=79.39 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=102.9
Q ss_pred cchhhhhHHHhhhhc--hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 5 LLLGPVASSFVDKYG--CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
.++.++.|+++|+.. ++.+..++.+..+++.+... +.++++.+ +...++.|++.|.........+.+..+. +-..
T Consensus 347 i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p-~~~~~~~l-~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~ 424 (509)
T KOG2504|consen 347 IIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLP-FATTYVGL-IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSN 424 (509)
T ss_pred hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcch
Confidence 578899999999987 55666677777777777777 88999866 6668899999998877777788888766 4889
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhh
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~ 130 (235)
+.|+...+.+++..+||++++.+.+..| |...|+..+++.++...++++
T Consensus 425 a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 425 AYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred HHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 9999999999999999999999998887 999999988877776666554
No 194
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.50 E-value=4.2e-06 Score=70.45 Aligned_cols=109 Identities=11% Similarity=0.030 Sum_probs=66.5
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~ 82 (235)
..++.++.+++.||+|+|+.+.++.++..++.++.. +.++.+.. +....+.+.|.+..++.. ...+..|. +|+
T Consensus 252 ~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~-- 325 (392)
T PRK10473 252 SMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA-LSPSHAVS-LFGITLICAGFSVGFGVA--MSQALGPFSLRA-- 325 (392)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHhHHH--HHHHhccCcccc--
Confidence 457789999999999999999999988888887777 65544422 222333344443333322 22233343 332
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG 119 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~ 119 (235)
+.......++..+++.+++++.+..|+.....+.+.
T Consensus 326 -g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 326 -GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 333344456666777777777777777655544443
No 195
>KOG3764|consensus
Probab=98.46 E-value=9.2e-07 Score=72.96 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=95.4
Q ss_pred cccchhhhhHHHhhhhc--hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-c---
Q psy6058 3 VPLLLGPVASSFVDKYG--CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-D--- 76 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~--- 76 (235)
.+.+++.+.|.+.||++ |......+.+...+++...- +++++.++ ++-++..|++.+.............. +
T Consensus 318 ~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP-~~~~~~~L-~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~ 395 (464)
T KOG3764|consen 318 SYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIP-FATSIAQL-WVPNFGLGFGIGLADASLIPTLGYLVDPRHV 395 (464)
T ss_pred chhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhH-hhhhHHHH-hhhhHHHHHHHHHHHHHHhhhhHHhcchhhc
Confidence 46899999999999999 54445555556666666666 78888877 44466667777666666555554433 1
Q ss_pred c---chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 77 K---KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 77 ~---~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+ -.|...++...++.+|.++||.+++.+.+..|++|.-.+.++..++...++.+.
T Consensus 396 s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 396 SGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred cccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 258899999999999999999999999999999999988888777666665443
No 196
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.44 E-value=4.2e-06 Score=72.76 Aligned_cols=123 Identities=11% Similarity=0.042 Sum_probs=87.2
Q ss_pred cchhhhhHHHhhhhchhH-------HHHHHHHHHHHHHHHHH----Hhh-----chHHHHHHHHHHHHHhhhhhhhHhHH
Q psy6058 5 LLLGPVASSFVDKYGCRW-------MTILGGIISGTGFVLSA----TVA-----NSIEAQYITFGCIAGCGLSLAYVTAV 68 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~-------~~~~~~~~~~~~~~~~~----~~~-----~~~~~l~i~~~~l~G~~~g~~~~~~~ 68 (235)
.+.+|+.+++.||+++|+ -+.+|.++.+++.+..+ ... .+.+++ +..-++.|+|.+...++..
T Consensus 323 ii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~-i~~~~l~g~Ge~~~~~~g~ 401 (489)
T PRK10207 323 VVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFI-VLVYLFQSLGELFISALGL 401 (489)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHH-HHHHHHHHHHHHHHhHHHH
Confidence 477888999999999886 36677777776664331 011 234544 4557888999999999999
Q ss_pred HHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHh----------hhCcHHHHHHHHHHHHHHHHHH
Q psy6058 69 VSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIE----------EYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 69 ~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~----------~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
.++.+..|++ +|.++|++.....+|+.++..++..... .....+.|...++..++..++.
T Consensus 402 ~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~ 472 (489)
T PRK10207 402 AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVM 472 (489)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999888886 9999999999999999999888765521 0124556666665444444443
No 197
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.39 E-value=2.9e-06 Score=72.49 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=87.0
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc---
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK--- 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~--- 77 (235)
...++.+++++++||+|+|+.+..+.++.+++.++.. +.+ +.+.+ ++..++.|++.+..++...++++|..+.
T Consensus 272 ~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~ 349 (428)
T PF13347_consen 272 ASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF-FLGPGSPWLV-LILFILAGIGYGAFFVIPWAMLADVIDYDEW 349 (428)
T ss_pred HHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH-HHHhhhHHHH-HHHHHHhHhhhcccccccccccccchhhHHH
Confidence 4567889999999999999999999999999998887 654 66655 5557888999999888888888876541
Q ss_pred -----chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 78 -----KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 78 -----~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
+.|...|+.....-+|..+++.+.+.+.+..|+
T Consensus 350 ~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 350 KTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 257888899999999999999998888765543
No 198
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.36 E-value=1.1e-05 Score=72.11 Aligned_cols=125 Identities=11% Similarity=-0.033 Sum_probs=94.1
Q ss_pred ccchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhch-----H--HHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058 4 PLLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANS-----I--EAQYITFGCIAGCGLSLAYVTAVVSIAYWF 75 (235)
Q Consensus 4 ~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~-----~--~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~ 75 (235)
..+.+.++|+++|+ +|+++.++++.++..++.++.+ +... . ..+.+.+..+..+|.|+.-+...+...+-+
T Consensus 36 ~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf 114 (654)
T TIGR00926 36 CYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF 114 (654)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhc
Confidence 35678889999998 6999999999999999988887 5421 1 112233356667888888888888888766
Q ss_pred cc-c---hhHHHHHHHhhHHHHHHHHHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHHHh
Q psy6058 76 DK-K---RTLATSLGACGTGIGTFVYAPLTQYWIEEY-------GWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 76 ~~-~---rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~-------gw~~~~~~~~~~~~~~~~~~~ 129 (235)
++ + |-....+++.+.++|+++++.+.+++.+.+ +|...|.+.+++.++.+++..
T Consensus 115 ~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 115 EERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 43 2 567778888999999999999998887543 699999888777666655543
No 199
>KOG0252|consensus
Probab=98.36 E-value=2.8e-07 Score=77.26 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=94.4
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch-H---HHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS-I---EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK- 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~-~---~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~- 78 (235)
+..+-.+...++|++||+++.+.|.+++++..+..+ ...+ . ...++.+.+.+-++.-+.......+-+|.||.+
T Consensus 361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~-~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv 439 (538)
T KOG0252|consen 361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIA-GPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV 439 (538)
T ss_pred cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHc-CCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence 344667778899999999999999999999988888 6655 1 112122122211222222344445678999998
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHh-----hhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIE-----EYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~-----~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
|++..|+.....-.|..++.....++.+ ..|.+.++++.+.+.++..+..+++
T Consensus 440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~ 497 (538)
T KOG0252|consen 440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI 497 (538)
T ss_pred hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence 9999999999999999999999999988 6789999999888887776665544
No 200
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.34 E-value=3.3e-06 Score=69.52 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=72.2
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
.++.++.|++.||+|+|+...+......++.+... .. .+.... +...++.|++.+...+....++.+..|+ +||
T Consensus 257 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 334 (352)
T PF07690_consen 257 IIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL-LLPFSSSPVWL-IIALFLIGFGFGIVFPILFSLIQELVPPEYRG 334 (352)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC-CSHHHCHHHHH-HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45688999999999988777777776666665554 33 233434 3446778999999999999999998876 499
Q ss_pred HHHHHHHhhHHHHHHHHH
Q psy6058 81 LATSLGACGTGIGTFVYA 98 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~ 98 (235)
++.|+.+....+|..++|
T Consensus 335 ~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 335 TAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 999999999999999887
No 201
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.32 E-value=3.9e-06 Score=69.67 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=67.0
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-----------chHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-----------NSIEAQYITFGCIAGCGLSLAYVTAVVSIA 72 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~ 72 (235)
..++.+++|++.||+|+|+.+..+.++..++..+.. +. ++.+.+ +...++.+++.+...+....++.
T Consensus 258 ~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~ 335 (356)
T TIGR00901 258 AILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFV-WLASNGHHDGITFPHLLML-FLTITLEAVTGGLGTVAFVAFLS 335 (356)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHhcCcccccccchHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence 357888999999999999998888888777766554 32 233433 44467779999999999999999
Q ss_pred hhcccc-hhHHHHHHHhhHH
Q psy6058 73 YWFDKK-RTLATSLGACGTG 91 (235)
Q Consensus 73 ~~~~~~-rg~~~~~~~~~~~ 91 (235)
+.+|++ ||+..|++++..+
T Consensus 336 ~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 336 KLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HhcCCCccHHHHHHHHHHHh
Confidence 988775 9999999877543
No 202
>KOG2325|consensus
Probab=98.32 E-value=4.8e-06 Score=71.16 Aligned_cols=101 Identities=16% Similarity=0.107 Sum_probs=77.4
Q ss_pred cccchhhhhHHHhhhhch-hHHHHHHHHHHHHHHHHHHHhh---c-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHh-hcc
Q psy6058 3 VPLLLGPVASSFVDKYGC-RWMTILGGIISGTGFVLSATVA---N-SIEAQYITFGCIAGCGLSLAYVTAVVSIAY-WFD 76 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~---~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~-~~~ 76 (235)
+.++++++.|+...|.+. |+.++.|.++.++++++...+. + ..+ +++++|++.|+|.|.. ...=.|++. ..+
T Consensus 83 g~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y-~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~ 160 (488)
T KOG2325|consen 83 GHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKY-LMLVARILTGVGVGNF-AVLRAYIADASTV 160 (488)
T ss_pred HHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence 457889999999999885 7788999999999998883132 3 334 3356699999987754 444467776 467
Q ss_pred cchhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058 77 KKRTLATSLGACGTGIGTFVYAPLTQYWI 105 (235)
Q Consensus 77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~ 105 (235)
++|.++.+....+..+|..+||.+...+.
T Consensus 161 ~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 161 EDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred cchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 78999999988888889889888876654
No 203
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.31 E-value=8.8e-06 Score=70.47 Aligned_cols=117 Identities=14% Similarity=0.166 Sum_probs=74.3
Q ss_pred cchhhhhHHHhh----hhch-hHHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHHh
Q psy6058 5 LLLGPVASSFVD----KYGC-RWMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIAY 73 (235)
Q Consensus 5 ~i~~~~~g~l~d----r~G~-r~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~ 73 (235)
++..|+.|+++| |+|| |+.++++....+++.+++. ..++ ++.+ ++..++.+++.....++..++..+
T Consensus 56 ai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf-~~p~~~~~~~~~~~-~~~~~l~~~~~t~~~ip~~al~~~ 133 (473)
T PRK10429 56 AINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF-SAHLFEGTAQYVFV-CVTYILWGMTYTIMDIPFWSLVPT 133 (473)
T ss_pred HHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH-cCCCCCccHHHHHH-HHHHHHHHHHHHHHcchHHhhhHH
Confidence 567889999999 5698 5667778777777765554 4331 1222 333456677787788888888888
Q ss_pred hc--ccchhHHHHHHHhhHHHHHHHHHHHHHHHHhh-------hCcHHHHHHHHHHHHH
Q psy6058 74 WF--DKKRTLATSLGACGTGIGTFVYAPLTQYWIEE-------YGWRGTILLLAGTFLQ 123 (235)
Q Consensus 74 ~~--~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-------~gw~~~~~~~~~~~~~ 123 (235)
.. +++|.+..++-..+..+|+.+.+.+...+.+. .+|+....+.+++.++
T Consensus 134 lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~ 192 (473)
T PRK10429 134 LTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIV 192 (473)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence 76 44599988886666677766655554433222 2455555554444433
No 204
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.31 E-value=1.5e-05 Score=58.25 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=77.9
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
..+++++.+.+.+++|.|+.+++|.+...+-.+... . ++.+.+ +...++.|++.+..++....++.+...++ +++.
T Consensus 50 ~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~-~~~~~l-~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~ 126 (156)
T PF05978_consen 50 FAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-Y-PNSYTL-YPASALLGFGAALLWTAQGTYLTSYSTEETIGRN 126 (156)
T ss_pred HHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-h-hhHHHH-HHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhH
Confidence 467788899999999999999999998887666654 3 444445 44478899999999999999999987665 9999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYW 104 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~ 104 (235)
.+++......+.++|..+.-.+
T Consensus 127 ~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 127 TGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877777777776665444
No 205
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.30 E-value=2.8e-05 Score=65.49 Aligned_cols=104 Identities=10% Similarity=-0.058 Sum_probs=68.0
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHH-HHHHHHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISG-TGFVLSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTL 81 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~-~~~~~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~ 81 (235)
.+++++.+++.||++++.......+... +...... . ..+.+.+ +...++.|++.+...+....+..+.+|+++|.
T Consensus 257 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 334 (394)
T PRK11652 257 FFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPG-WFGVMNVWTL-LVPAALFFFGAGMLFPLATSGAMEPFPYLAGT 334 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccchH
Confidence 4556667777777763332222222111 2111111 1 1233433 44467788888888888888888888888999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
+.++.+....+|..+++.+++.+.....+
T Consensus 335 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 363 (394)
T PRK11652 335 AGALLGGLQNIGSGLAALLSAMLPQTGQF 363 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 99999999999999999998887655333
No 206
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.28 E-value=3.2e-05 Score=64.57 Aligned_cols=98 Identities=21% Similarity=0.073 Sum_probs=59.7
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchh
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV---ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRT 80 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg 80 (235)
..++.++.|++.||+|+|+.+..+..+..+..+..... ..+.+.+ +....+.+.+.+.........+.+..|++++
T Consensus 243 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 321 (377)
T PRK11102 243 LFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWAL-VVGVAAFVGCVSMISSNAMAVILDEFPHMAG 321 (377)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHhhHHHHHHHhccccccch
Confidence 45778899999999999999888887654433322201 1233322 2223333444444444555566667787799
Q ss_pred HHHHHHHhh-HHHHHHHHHHHHH
Q psy6058 81 LATSLGACG-TGIGTFVYAPLTQ 102 (235)
Q Consensus 81 ~~~~~~~~~-~~~g~~l~~~~~~ 102 (235)
++.++.+.. ..+|..+++.+..
T Consensus 322 ~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 322 TASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999886543 4566666666543
No 207
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.28 E-value=6.7e-06 Score=68.08 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=92.9
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhH
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTL 81 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~ 81 (235)
.+.++|-+++.++..|+...+.+.+.+++..+.++..+ ++++.+.++ . .++.|+..+..+|...+...+..|++ ..
T Consensus 283 ~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~-l~~g~v~~~-~-l~~ig~F~simfPTIfslal~~l~~~-ts 358 (422)
T COG0738 283 VGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVA-LIGGVVALY-A-LFLIGLFNSIMFPTIFSLALKNLGEH-TS 358 (422)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-HhcChHHHH-H-HHHHHHHhHHHHHHHHHHHHhccCcc-cc
Confidence 34567778888888999999999999988888888888 888876553 3 47779999999999999988888743 33
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC 125 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~ 125 (235)
..|..-.+..+|+++.|.+.+++.|++|-...+.....++.+..
T Consensus 359 ~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 359 VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33444555678999999999999999998888774444443333
No 208
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.26 E-value=5.8e-06 Score=71.50 Aligned_cols=105 Identities=14% Similarity=0.058 Sum_probs=83.4
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhh
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYW 74 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~ 74 (235)
.+++..+.+++.+|++.|+++.++.++..++.+...... ++.+ +++...++.+++.+..+.+...++.+.
T Consensus 301 ~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~ 379 (468)
T TIGR00788 301 SLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV-FVLGDSIIAEVLAQLKFMPFLVLLARL 379 (468)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee-eeeehhHHHHHHHHHHHccHHHHHHHh
Confidence 356778888888999999999999998888775442011 2222 223446777888888889999999998
Q ss_pred cccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058 75 FDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYG 109 (235)
Q Consensus 75 ~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g 109 (235)
.|++ +|+..+++++..++|..+++.+++.+.+..|
T Consensus 380 ~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 380 CPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred CCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8876 9999999999999999999999999988877
No 209
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.22 E-value=2.7e-06 Score=72.68 Aligned_cols=124 Identities=18% Similarity=0.196 Sum_probs=86.8
Q ss_pred ccchhhhhHHHhh----hhchhHH-HHHHHHHHHHHHHHHHHhh-c-h------HHHHHHHHHHHHHhhhhhhhHhHHHH
Q psy6058 4 PLLLGPVASSFVD----KYGCRWM-TILGGIISGTGFVLSATVA-N-S------IEAQYITFGCIAGCGLSLAYVTAVVS 70 (235)
Q Consensus 4 ~~i~~~~~g~l~d----r~G~r~~-~~~~~~~~~~~~~~~~~~~-~-~------~~~l~i~~~~l~G~~~g~~~~~~~~~ 70 (235)
-++..|+.|.++| |+|||+. +++|....+++.+++. .. + + ...+ .+..++..++......+..++
T Consensus 50 dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf-~~~p~~~~~~~~~~~~-~~~~~l~~~~~t~~~i~~~al 127 (428)
T PF13347_consen 50 DAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLF-SPPPAGLSFTAKLVWL-FVFYILFDIAYTFVQIPYNAL 127 (428)
T ss_pred hhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhh-ccccchhhhhhHHHHH-HHHHHHHHHhhhhccCchhhc
Confidence 4577899999999 7896655 5577788888877776 44 3 1 1222 333556688888888888889
Q ss_pred HHhhccc--chhHHHHHHHhhHHHHHHHHHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHHHh
Q psy6058 71 IAYWFDK--KRTLATSLGACGTGIGTFVYAPLTQYWIEEY-------GWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 71 ~~~~~~~--~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~-------gw~~~~~~~~~~~~~~~~~~~ 129 (235)
..+..+. +|.+..+.-..+..+|.++...+.+.+.+.. +|++..++.+++.++..+..+
T Consensus 128 ~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~ 195 (428)
T PF13347_consen 128 IPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITF 195 (428)
T ss_pred CccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhh
Confidence 9998753 5999999988888888876666666555332 588887777766655544433
No 210
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.20 E-value=2.1e-05 Score=64.36 Aligned_cols=89 Identities=18% Similarity=0.063 Sum_probs=70.2
Q ss_pred hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhh------------
Q psy6058 41 VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEE------------ 107 (235)
Q Consensus 41 ~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~------------ 107 (235)
...+++.+ ++.-++.|.|.+...+..+.+++...++ ++.+.+++.+.++++|..++|.+++.+...
T Consensus 6 ~~~~~~~~-l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 6 SQRYYVLF-LGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HhhHHHHH-HHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 34566645 5558889999999999999999998765 599999999999999999999999987732
Q ss_pred ----hCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 108 ----YGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 108 ----~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
..|+++|++.+++.++..+.+.+
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~ 111 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAF 111 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899988776655444444333
No 211
>PRK11462 putative transporter; Provisional
Probab=98.17 E-value=4.1e-05 Score=66.15 Aligned_cols=121 Identities=13% Similarity=0.088 Sum_probs=81.4
Q ss_pred cchhhhhHHHhhh----hchh-HHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHHh
Q psy6058 5 LLLGPVASSFVDK----YGCR-WMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIAY 73 (235)
Q Consensus 5 ~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~ 73 (235)
++..|+.|+++|| +||| +.++++....+++.+++. ..++ ...+ .+.-++..++......+..++..+
T Consensus 59 ai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf-~~p~~s~~~~~~y~-~~~~~~~~~~~t~~~ipy~al~~~ 136 (460)
T PRK11462 59 AISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAY-STPDLSMNGKMIYA-AITYTLLTLLYTVVNIPYCALGGV 136 (460)
T ss_pred HHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHH-hCCCCCcchHHHHH-HHHHHHHHHHHHHHhccHHHHHHH
Confidence 4678999999997 6876 555667777777766654 4432 2212 333555677888888888888888
Q ss_pred hcc--cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHH
Q psy6058 74 WFD--KKRTLATSLGACGTGIGTFVYAPLTQYWIEEY-------GWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 74 ~~~--~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~-------gw~~~~~~~~~~~~~~~~~ 127 (235)
..+ ++|.+..++-..+..+|..+++.+...+.... ||+....+.+++.++...+
T Consensus 137 lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 137 ITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 764 45999999999888888888877765554433 4666665555544444333
No 212
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.15 E-value=0.00029 Score=59.33 Aligned_cols=129 Identities=16% Similarity=0.070 Sum_probs=91.1
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~ 82 (235)
++...++...+.|..+.|++++++.+...+..++.. +.++...+ -+.-+..|++.+. ..+..+++-...|+ +--++
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll-~~~sv~~m-q~~q~~yg~~~a~-evay~sYiys~v~~~~yq~v 130 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLL-FGTSVLAM-QLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKV 130 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHCcHHHH-HHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHH
Confidence 345667788999999999999999999999988888 89999877 5558888887764 56666777665555 45667
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHh--hhCcHHHHHHHHHHHHHHHHHHhhccCCc
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIE--EYGWRGTILLLAGTFLQMCICGALMKDPE 135 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~--~~gw~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (235)
.+....+..+|..++..++..+.. ...+....++......+.++..+++.+++
T Consensus 131 ts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 131 TSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 777777777777777777666554 33455565555554555555544443333
No 213
>KOG0254|consensus
Probab=98.11 E-value=4e-05 Score=67.08 Aligned_cols=122 Identities=22% Similarity=0.271 Sum_probs=76.7
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchH-----------HHHHHHHHHHHHhhhhhhhHhH-HHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSI-----------EAQYITFGCIAGCGLSLAYVTA-VVSI 71 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~i~~~~l~G~~~g~~~~~~-~~~~ 71 (235)
..++..++.++.||+|||+.++.+...+.++.++.+ ..... ..+.++...+.-...+....+. ..+.
T Consensus 342 ~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~ 420 (513)
T KOG0254|consen 342 NFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILA-VVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIV 420 (513)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH-HHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhh
Confidence 356677778999999999999999999999988777 43111 1111121122222222223333 3577
Q ss_pred Hhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHH
Q psy6058 72 AYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCI 126 (235)
Q Consensus 72 ~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~ 126 (235)
+|.+|.+ |+.+.++......+.+.+............++...|...+..+.+...
T Consensus 421 sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~ 476 (513)
T KOG0254|consen 421 SEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI 476 (513)
T ss_pred hccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 8999998 999999988777777766555555555544444555555554444444
No 214
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.07 E-value=0.00016 Score=60.43 Aligned_cols=110 Identities=14% Similarity=0.039 Sum_probs=78.7
Q ss_pred chhhhhHHHhhhhc-----hhHHHH-HHHHHHHHHHHHHHHhh-----c-------hHH-H--HHHHHHHHHHhhhhhhh
Q psy6058 6 LLGPVASSFVDKYG-----CRWMTI-LGGIISGTGFVLSATVA-----N-------SIE-A--QYITFGCIAGCGLSLAY 64 (235)
Q Consensus 6 i~~~~~g~l~dr~G-----~r~~~~-~~~~~~~~~~~~~~~~~-----~-------~~~-~--l~i~~~~l~G~~~g~~~ 64 (235)
...+.+|+.+|+.+ ||..++ .|.++...+..+.. ++ . +.+ . +.....++.|+|.+...
T Consensus 29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap-~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~ 107 (403)
T PF03209_consen 29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAP-FALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG 107 (403)
T ss_pred HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHH-HHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence 35678999999988 775554 55555555554443 22 2 222 1 12233566788888888
Q ss_pred HhHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHH
Q psy6058 65 VTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILL 116 (235)
Q Consensus 65 ~~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~ 116 (235)
++..+.+++..|+ +|+++.++..++..+|..++..+.+.+.+.+.-.....+
T Consensus 108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v 160 (403)
T PF03209_consen 108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV 160 (403)
T ss_pred HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 8888999997755 699999999999999999999999999888765444433
No 215
>PRK11462 putative transporter; Provisional
Probab=98.05 E-value=0.00012 Score=63.36 Aligned_cols=105 Identities=13% Similarity=-0.003 Sum_probs=64.0
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc------c
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD------K 77 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~------~ 77 (235)
+++.+++++++||+|+|..+..+.++..+..++...... +.+.+ +..-++.|++.+...+....++++..+ .
T Consensus 277 iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG 355 (460)
T PRK11462 277 LIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITM-FVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNG 355 (460)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcC
Confidence 567788999999999998877655544443333330222 22222 233455677666655555555555433 1
Q ss_pred ch--hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 78 KR--TLATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 78 ~r--g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
+| |...+......-+|.++++.+.+.+.+..|+
T Consensus 356 ~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 356 KRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23 4445666677888999998888887765444
No 216
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.05 E-value=7.3e-05 Score=64.06 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=89.9
Q ss_pred chhhhhHHHhhhh-----chhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc--
Q psy6058 6 LLGPVASSFVDKY-----GCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-- 75 (235)
Q Consensus 6 i~~~~~g~l~dr~-----G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-- 75 (235)
..-|+.|.++|-+ .||+-++++.++..++.+..+... .+.... .+..++..+|........-+.+.|..
T Consensus 39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~-~~~l~la~~g~a~~DV~aDa~vvE~~~~ 117 (433)
T PF03092_consen 39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA-VVLLFLASFGYAFADVAADALVVELARR 117 (433)
T ss_pred HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH-HHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence 4568899999986 355666677777655555555122 233323 44456677888888888888888765
Q ss_pred -ccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 76 -DKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 76 -~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
|..||...+.......+|++++..+.+.+.+..+++..|.+.+++.++..+..++
T Consensus 118 ~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~ 173 (433)
T PF03092_consen 118 EPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALF 173 (433)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHH
Confidence 3348888999999999999999999999999999999998877766655554443
No 217
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.02 E-value=0.00017 Score=59.17 Aligned_cols=124 Identities=16% Similarity=0.087 Sum_probs=92.3
Q ss_pred cchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc--ccchhH
Q psy6058 5 LLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF--DKKRTL 81 (235)
Q Consensus 5 ~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~--~~~rg~ 81 (235)
...++....+.+|. .+|+..+...+++.++.+.+. +.+....++. .++.|+|.|..++.....+.... |++-+.
T Consensus 257 ~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~-~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~ 333 (395)
T COG2807 257 LPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL-LAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAA 333 (395)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHH
Confidence 45666777888864 577777777788888887777 5544332222 47789999999999988888654 334677
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
..++.+....+=.++||.+.+++-|.. +|+..++......+...++-+..
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a 384 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA 384 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence 788888888888899999999999887 49988888777766666665443
No 218
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.01 E-value=8.1e-05 Score=65.66 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=88.7
Q ss_pred cchhhhhHHHhhhhch-hHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058 5 LLLGPVASSFVDKYGC-RWMTILGGIISGTGFVLSATV-ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL 81 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~ 81 (235)
++++.+.|.+..++++ |+.++++.+++.+++.+++.. .+|.... +.+-++.|++.|....+....+.-..|.+ .|.
T Consensus 363 ~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~-i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~ 441 (599)
T PF06609_consen 363 CAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAA-IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGT 441 (599)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchH-HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHH
Confidence 4566777888887764 455567777776655555412 2344333 45567788888876666655554455665 999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHh-------------------------------------------------------
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIE------------------------------------------------------- 106 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~------------------------------------------------------- 106 (235)
+.++..+...+|+.++..+...+..
T Consensus 442 a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~ 521 (599)
T PF06609_consen 442 ATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVV 521 (599)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHH
Confidence 9999999999998888777533221
Q ss_pred -------hhCcHHHHHHHHHHHHHHHHHHhhccCCch
Q psy6058 107 -------EYGWRGTILLLAGTFLQMCICGALMKDPEW 136 (235)
Q Consensus 107 -------~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (235)
..++|++|+....+..+.++++++.++.+.
T Consensus 522 ~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~ 558 (599)
T PF06609_consen 522 AAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDK 558 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 025788888888888888888888876554
No 219
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.00019 Score=61.38 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=79.2
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc------c
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF------D 76 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~------~ 76 (235)
+++.+++.++++|+|+|+++.++.++.+++.+++. +.+ +.+ +.++..++.++|.+...+...+.+++.. .
T Consensus 286 l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~-f~~~~~~~-l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~T 363 (467)
T COG2211 286 LIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY-FTPAGSVV-LIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKT 363 (467)
T ss_pred HHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH-hhcCcchH-HHHHHHHHHHHHhhccccccHHHhcchhhHHHHHh
Confidence 44588999999999999999999999999998888 554 444 4355578888888888888777776543 2
Q ss_pred c-c-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058 77 K-K-RTLATSLGACGTGIGTFVYAPLTQYWIEEYG 109 (235)
Q Consensus 77 ~-~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g 109 (235)
. + -|...+....+.=+|.+++..+.++.....|
T Consensus 364 G~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 364 GVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2 2 4666777777788888888888888776544
No 220
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.92 E-value=7.6e-05 Score=62.62 Aligned_cols=107 Identities=21% Similarity=0.136 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---chH------HHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc----chhHHHHHHHh
Q psy6058 22 WMTILGGIISGTGFVLSATVA---NSI------EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK----KRTLATSLGAC 88 (235)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~---~~~------~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~----~rg~~~~~~~~ 88 (235)
+.+++|.++..+|.++.. ++ ... +.+ .++.++.++|.|+.-+.....+++-+++ +|.....+++.
T Consensus 2 ktI~~g~~~~~~G~~ll~-l~~~~~~~~~~~~~~~~-~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~ 79 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLT-LSAIPPSLPSGIQLGLF-YIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYW 79 (372)
T ss_dssp HHHHHHHHHHHHHHHH---HHHTSSSC------CHH-HHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhH-HHHhcchhhhhHHHHHH-HHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 567888999999988854 33 222 334 4446778999999999999999986633 26777888999
Q ss_pred hHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 89 GTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 89 ~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
+.++|..+++.+.+++.+++||...|.+.++..++.++..+.
T Consensus 80 ~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 80 GINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988777666555443
No 221
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.00015 Score=61.93 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=86.6
Q ss_pred cchhhhhHHHhhh----hchh-HHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHHh
Q psy6058 5 LLLGPVASSFVDK----YGCR-WMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIAY 73 (235)
Q Consensus 5 ~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~ 73 (235)
++..|+.|.++|| +||+ +.++++.+..++.+.++. .+++ ....++. -++.+++......+..++..+
T Consensus 62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F-~~p~~~~~~k~~ya~vt-Y~l~~l~YT~vniPy~al~~~ 139 (467)
T COG2211 62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLF-ITPDFSMTGKLIYALVT-YMLLGLGYTLVNIPYGALGPE 139 (467)
T ss_pred HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHH-cCCCcccCcchHHHHHH-HHHHHHHHHheeCchhhcchh
Confidence 4667899999997 5654 567778777777777666 5542 2222233 677788898888888888888
Q ss_pred hc--ccchhHHHHHHHhhHHHHHHHHHHHHHHHHh-------hhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 74 WF--DKKRTLATSLGACGTGIGTFVYAPLTQYWIE-------EYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 74 ~~--~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
.- |+||.+..+.-..+..+|..+...+...+.. ..||+....+.+++.++.++.+++
T Consensus 140 iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~ 205 (467)
T COG2211 140 ITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF 205 (467)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 75 5569999999888888887776666555543 246777777766666555555443
No 222
>KOG0255|consensus
Probab=97.86 E-value=0.00036 Score=61.15 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=75.8
Q ss_pred hhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH--HHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHH
Q psy6058 8 GPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA--QYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATS 84 (235)
Q Consensus 8 ~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~--l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~ 84 (235)
....+.+.|++|||.....+.++..+++++.+ +...... +......+..++.+..+.....+.+|.+|.. |..+.+
T Consensus 367 ~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~ 445 (521)
T KOG0255|consen 367 YFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFG-WLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVG 445 (521)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34557889999999999999999999999888 6543322 2233345555666667777788889999986 999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHh
Q psy6058 85 LGACGTGIGTFVYAPLTQYWIE 106 (235)
Q Consensus 85 ~~~~~~~~g~~l~~~~~~~~~~ 106 (235)
...+...+|++++|.+......
T Consensus 446 ~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 446 AISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888655443
No 223
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.85 E-value=6.6e-05 Score=63.29 Aligned_cols=125 Identities=13% Similarity=-0.013 Sum_probs=61.9
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHH--HHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIIS--GTGFVLSATVA----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~--~~~~~~~~~~~----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
.++.+|+.|.++||+|.|+-++....+. ..+.+...++. .|.+...+++.+..|+......+..-+++.++. +
T Consensus 56 ~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s-r 134 (412)
T PF01306_consen 56 ALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS-R 134 (412)
T ss_dssp HHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH-H
T ss_pred HHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH-H
Confidence 4678899999999999666554333222 22222221021 333222122223334333333344444444432 1
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
+.+.-.|-.-+...+|.+++..++|.+.+. +-...|++..+..++..++.++
T Consensus 135 ~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 135 RNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp HHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHH
Confidence 223333444555667777777888877753 3346666655544444444343
No 224
>KOG2532|consensus
Probab=97.84 E-value=4.3e-05 Score=65.82 Aligned_cols=126 Identities=12% Similarity=0.055 Sum_probs=78.3
Q ss_pred cccchhhhhHHHhhhhch---------hHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058 3 VPLLLGPVASSFVDKYGC---------RWMTILGGIISGTGFVLSATVANSIEA-QYITFGCIAGCGLSLAYVTAVVSIA 72 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~---------r~~~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~~~l~G~~~g~~~~~~~~~~~ 72 (235)
.+.+..+++|.++||.-+ |..-.++....+++.+..+ +.++... +.++ .+..+++..+........-.
T Consensus 306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~-~~~~~~~~~a~~-~l~~~~~~~g~~~~Gf~~~~ 383 (466)
T KOG2532|consen 306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA-FTSDEHRLLAVI-LLTIAIGLSGFNISGFYKNH 383 (466)
T ss_pred HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee-ecCCCcchHHHH-HHHHHHHHcccchhhhHhhh
Confidence 356778899999998744 3333344445555555555 4442111 1112 12222222222222222222
Q ss_pred -hhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHh---hhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 73 -YWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIE---EYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 73 -~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~---~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
+..|++-+..+|+.+....+.++++|.+.+.+.. ...|+.+|++.+++.++..+...+
T Consensus 384 ~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 384 QDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 3377789999999999999999999999999984 347999999988877666555433
No 225
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.83 E-value=0.00063 Score=57.91 Aligned_cols=73 Identities=12% Similarity=-0.032 Sum_probs=48.7
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHH
Q psy6058 50 ITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQ 123 (235)
Q Consensus 50 i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~ 123 (235)
+...++.++|.+...+......-.-.+..+|++.+++......+..+++...+++.++ +-...|...+++..+
T Consensus 316 ~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 388 (413)
T PRK15403 316 VLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV 388 (413)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence 4446777888887766665433221222489999998888888888888888887665 556666655544433
No 226
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.82 E-value=2.7e-05 Score=64.62 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=60.2
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-c---hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccch
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-N---SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKR 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~r 79 (235)
..++.+++|+++||+|+|+.+..+......+..+.. .. . +.+.. +...++.+++.|...+.....+.+.+|+++
T Consensus 274 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 351 (366)
T TIGR00886 274 GSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV-LGLVSPLSLAVF-IVLFVALFFFSGAGNGSTFALVPHIFRRAT 351 (366)
T ss_pred HHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHH-hcCCCcchHHHH-HHHHHHHHHHhccccchhhhcchhhchhhc
Confidence 457788999999999999888777766666655544 32 2 34322 232344455555555666677778888889
Q ss_pred hHHHHHHHhhHHHH
Q psy6058 80 TLATSLGACGTGIG 93 (235)
Q Consensus 80 g~~~~~~~~~~~~g 93 (235)
|.+.|+.+....+|
T Consensus 352 g~~~g~~~~~~~~g 365 (366)
T TIGR00886 352 GAVSGLVGAIGNLG 365 (366)
T ss_pred ccHHHHHHHhccCC
Confidence 99999988776654
No 227
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.79 E-value=1.6e-07 Score=80.45 Aligned_cols=124 Identities=23% Similarity=0.237 Sum_probs=79.2
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHH---HhhchH----HHHHHHHHHHHHhhhhh-hhHhHHHHHHhhc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSA---TVANSI----EAQYITFGCIAGCGLSL-AYVTAVVSIAYWF 75 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~---~~~~~~----~~l~i~~~~l~G~~~g~-~~~~~~~~~~~~~ 75 (235)
..++.+++.++.||+|||+.++++.++.+++.+.++ ....+. ..+.++...+...+.+. ..+....+..|.|
T Consensus 299 ~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~Elf 378 (451)
T PF00083_consen 299 NFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELF 378 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccc
Confidence 356677777999999999999999988877776552 011211 11111212222222222 2244447789999
Q ss_pred ccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 76 DKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 76 ~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
|.+ |+++.++......++.++++.+...+.+..+-...+.+.+++.++..+.
T Consensus 379 Pt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 379 PTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 987 9999999988888999999888888877766233444444444444433
No 228
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.79 E-value=0.00089 Score=57.96 Aligned_cols=123 Identities=10% Similarity=0.080 Sum_probs=89.5
Q ss_pred chhhhhHHHhhhhch-hHHHHHHHHHHHHHHHHHHHhhch---------------------HHHHHHHHHHHHHhhhhhh
Q psy6058 6 LLGPVASSFVDKYGC-RWMTILGGIISGTGFVLSATVANS---------------------IEAQYITFGCIAGCGLSLA 63 (235)
Q Consensus 6 i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~i~~~~l~G~~~g~~ 63 (235)
+.+++..++.+|+|+ |.+..++.++.+++.+... +.++ .+.. ++...+.|+..+..
T Consensus 320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~Gi~~A~~ 397 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATV-LVTYVAKNSRYYDGDGESLPPPTGIKASA-LIVFAILGIPLAIT 397 (477)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH-HHHhhhhccccccccccccCcchhhHHHH-HHHHHHhhHHHHHH
Confidence 455667788899985 6777888888888877766 4432 1323 44467779999988
Q ss_pred hHhHHHHHHhhccc---chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC--cHHHHHHHHHHHHHHHHHHhh
Q psy6058 64 YVTAVVSIAYWFDK---KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG--WRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 64 ~~~~~~~~~~~~~~---~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g--w~~~~~~~~~~~~~~~~~~~~ 130 (235)
+..-++++++..++ +.|..+|+.+.+..+...+.....+.+.+.+| -.+++.+.++..++..++.++
T Consensus 398 ~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~ 469 (477)
T TIGR01301 398 YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI 469 (477)
T ss_pred HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence 88888899987663 36999999999999999998888787666554 455666666666666555443
No 229
>KOG4686|consensus
Probab=97.69 E-value=1.2e-05 Score=63.88 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=79.4
Q ss_pred cchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-cchh
Q psy6058 5 LLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSAT--VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD-KKRT 80 (235)
Q Consensus 5 ~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~-~~rg 80 (235)
.+-++++|++.|| +|-|+.-++-+++..++-++++. ..+.+|.+ +++|++.|+|.-...+.-+.+...||. |+.+
T Consensus 93 vVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M-~~GRF~FGIGgESlAVaQN~yav~wFKGKELn 171 (459)
T KOG4686|consen 93 VVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTM-LAGRFLFGIGGESLAVAQNKYAVYWFKGKELN 171 (459)
T ss_pred EEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHH-HhhheeeccCchhhhhhhcceeEEEecCcccc
Confidence 3567889999998 79998888888888888777761 34677766 777999999887777777788888885 4699
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058 81 LATSLGACGTGIGTFVYAPLTQYWIEE 107 (235)
Q Consensus 81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~ 107 (235)
.+.|+..+...+|+.+--.+.+++.+.
T Consensus 172 ~vfGlqlSvAR~GstvNf~lm~~ly~~ 198 (459)
T KOG4686|consen 172 FVFGLQLSVARLGSTVNFLLMPFLYDT 198 (459)
T ss_pred chhhHHHHHHHhhceeeeeecHHHHHH
Confidence 999999998899887665556665544
No 230
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.64 E-value=0.0029 Score=54.92 Aligned_cols=122 Identities=19% Similarity=0.092 Sum_probs=77.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch-
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGG-IISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR- 79 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r- 79 (235)
..++..|+.|-++|+-|+|+.++... .+..++++++....++.+.+..++-++..++.+...+...+++.+..++ ++
T Consensus 82 ~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~ 161 (477)
T PF11700_consen 82 LQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRV 161 (477)
T ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhh
Confidence 45678899999999988776655544 4555566666612344443434434555567777777788888887654 36
Q ss_pred -------------------------hHHHHHHHhhHHHHHHHHHHHHHHHHhh--------hCcHHHHHHHHHHHHHH
Q psy6058 80 -------------------------TLATSLGACGTGIGTFVYAPLTQYWIEE--------YGWRGTILLLAGTFLQM 124 (235)
Q Consensus 80 -------------------------g~~~~~~~~~~~~g~~l~~~~~~~~~~~--------~gw~~~~~~~~~~~~~~ 124 (235)
++..+.-.....+|+.+.-.+.-.+... .+.|.++.+.++.-++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vf 239 (477)
T PF11700_consen 162 RAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVF 239 (477)
T ss_pred hhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHH
Confidence 8888888877888887766654444322 22466666666644333
No 231
>PRK09848 glucuronide transporter; Provisional
Probab=97.55 E-value=0.001 Score=57.15 Aligned_cols=98 Identities=13% Similarity=-0.048 Sum_probs=55.6
Q ss_pred ccchhhhhHHHhhhh----chhHHH-HHHHHHHHHHHHH-HHHhh----chH-HHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058 4 PLLLGPVASSFVDKY----GCRWMT-ILGGIISGTGFVL-SATVA----NSI-EAQYITFGCIAGCGLSLAYVTAVVSIA 72 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~----G~r~~~-~~~~~~~~~~~~~-~~~~~----~~~-~~l~i~~~~l~G~~~g~~~~~~~~~~~ 72 (235)
.++..++.|+++||. |||+.. +++.+...+..++ +. .. .+. ...+....++.+++.+...++..++..
T Consensus 57 ~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 135 (448)
T PRK09848 57 DAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFW-VPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLAT 135 (448)
T ss_pred HHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHh-CcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhh
Confidence 467899999999996 666644 5555544444333 32 22 111 111122245667778777777777666
Q ss_pred hhc--ccchhHHHHHHHhhHH-----HHHHHHHHHHH
Q psy6058 73 YWF--DKKRTLATSLGACGTG-----IGTFVYAPLTQ 102 (235)
Q Consensus 73 ~~~--~~~rg~~~~~~~~~~~-----~g~~l~~~~~~ 102 (235)
+.. +++|.+..++-..+.. ++..++|.+.+
T Consensus 136 ~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 136 AMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 3458877666544333 44445555544
No 232
>KOG2563|consensus
Probab=97.55 E-value=0.00049 Score=58.09 Aligned_cols=104 Identities=25% Similarity=0.310 Sum_probs=71.9
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchH-----HH--HHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSI-----EA--QYITFGCIAGCGLSLAYVTAVVSIAYWF 75 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~--l~i~~~~l~G~~~g~~~~~~~~~~~~~~ 75 (235)
++....+.+-|+.||+|-|..++++..+.+++..+-. .+... .. +...+..+.+.+.-.....-.-..+-||
T Consensus 91 v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~-iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF 169 (480)
T KOG2563|consen 91 VSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRL-ISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWF 169 (480)
T ss_pred HHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhh-hccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhC
Confidence 4455667778999999999999999999999998877 55222 11 2233344444444333222234455688
Q ss_pred cc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058 76 DK-KRTLATSLGACGTGIGTFVYAPLTQYWIEE 107 (235)
Q Consensus 76 ~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~ 107 (235)
+. +|..+..+-.++..+|.+++-.+...+..+
T Consensus 170 ~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 170 PPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred CcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 65 699999998888888888887777776654
No 233
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.54 E-value=0.0042 Score=52.07 Aligned_cols=121 Identities=17% Similarity=0.065 Sum_probs=87.4
Q ss_pred ccchhhhhHHHhh-hhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-cc
Q psy6058 4 PLLLGPVASSFVD-KYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD-KK 78 (235)
Q Consensus 4 ~~i~~~~~g~l~d-r~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~-~~ 78 (235)
..++..+.|++.. |.++++...+|+....++..+.. .+ .+.+.+ ...-++.|++.|.......+.+.+... .+
T Consensus 257 ~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii-~a~~~~~~~~~-~~~~~l~G~g~G~f~vgals~mM~lt~~~~ 334 (403)
T PF03209_consen 257 TLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII-LAGPLGSPWLF-RPGVFLLGLGNGLFTVGALSLMMDLTSAGR 334 (403)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-HHHhcccchHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCCcc
Confidence 4566677777666 67888888888888887776654 33 455544 565788999999988888888878764 46
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHhh----------hCcHHHHHHHHHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIEE----------YGWRGTILLLAGTFLQMCI 126 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~----------~gw~~~~~~~~~~~~~~~~ 126 (235)
.|..+|.+...+.++..++..+++.+.|- .+|..+|.+.++..+...+
T Consensus 335 aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 335 AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888877653 2455566555554443333
No 234
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.53 E-value=0.0028 Score=53.76 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=47.2
Q ss_pred ccchhhhhHHHhhhhc-hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058 4 PLLLGPVASSFVDKYG-CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF 75 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G-~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~ 75 (235)
..++++++|.++||.+ +|+.+.+..++..+..+... ..++++.++.. .++..+......+...++..+..
T Consensus 50 ~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~-~~~~f~~~~~~-~~l~~~~~~p~~pl~dsi~~~~~ 120 (400)
T PF03825_consen 50 RIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA-FSSSFWWLFVI-MLLFSFFFSPTMPLSDSIALSYL 120 (400)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHccHHHHHHHHHHHHc
Confidence 4678899999999986 56667676677666666666 67777755443 55566666555555555555543
No 235
>PTZ00207 hypothetical protein; Provisional
Probab=97.45 E-value=0.0031 Score=55.98 Aligned_cols=124 Identities=12% Similarity=0.012 Sum_probs=83.5
Q ss_pred cchhhhhHHHh---hhhc-----hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058 5 LLLGPVASSFV---DKYG-----CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD 76 (235)
Q Consensus 5 ~i~~~~~g~l~---dr~G-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~ 76 (235)
++|-+..|.+. .|.+ +|...+....++.++.+++. +.-....+++. -++.|++.|..++.....++|.|.
T Consensus 405 ~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~-~~~p~~~L~~~-~~lvg~~~G~~~~~~~~i~selFg 482 (591)
T PTZ00207 405 AVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLF-LTLPKAALPLP-YFIAAFANGFMAATIALVTRTIFA 482 (591)
T ss_pred HhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHH-HHCCccHhHHH-HHHHHHHhhHhHHHHHHHHHHHhc
Confidence 45555666655 1221 22333333333666666665 44221335444 788899999999999999999999
Q ss_pred cchhHHHHHHHhhHHHHHHHH-HHHHHHHHhhh----------C---cHHHHHHHHHHHHHHHHHHhh
Q psy6058 77 KKRTLATSLGACGTGIGTFVY-APLTQYWIEEY----------G---WRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 77 ~~rg~~~~~~~~~~~~g~~l~-~~~~~~~~~~~----------g---w~~~~~~~~~~~~~~~~~~~~ 130 (235)
|+-|+-..+..+...+|+.+. ..+.+.+.|+- | ++..|++.+++++...+....
T Consensus 483 k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 483 KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 779999888888888998877 55667666542 2 678888888777776666443
No 236
>KOG2533|consensus
Probab=97.42 E-value=0.0013 Score=57.06 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=65.0
Q ss_pred cccchhhhhHHHhhh----hchhHHHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 3 VPLLLGPVASSFVDK----YGCRWMTILGGIISGTGF-VLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr----~G~r~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
+.+++.+++|+++|| ..+|.......++..+.. +... ...+....... .+....+.....+......+.....
T Consensus 321 ~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~s~~~~g 398 (495)
T KOG2533|consen 321 GGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLL-AAAVLPGAYGA-FLIGPYGLIATAIIALSWTSANLAG 398 (495)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-hhccchHHhHH-HHhcchhhHHHHHHHHhhccccccc
Confidence 457899999999999 677777666665544444 4333 33323322111 2222334444445555566654433
Q ss_pred c--hhHHHHHHHhhHHHHHHHHHHH-HHHHHhhhCcHHHHHHHHH
Q psy6058 78 K--RTLATSLGACGTGIGTFVYAPL-TQYWIEEYGWRGTILLLAG 119 (235)
Q Consensus 78 ~--rg~~~~~~~~~~~~g~~l~~~~-~~~~~~~~gw~~~~~~~~~ 119 (235)
+ |-...+....+.+.++++.|.+ .+....+++|...|+....
T Consensus 399 ~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~ 443 (495)
T KOG2533|consen 399 NTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA 443 (495)
T ss_pred hHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence 2 4455555666666665555444 4445566788888855443
No 237
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=97.42 E-value=2.6e-05 Score=68.42 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=2.9
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc----h-----------------------------------
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN----S----------------------------------- 44 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~----~----------------------------------- 44 (235)
.++..++..++.+|..|-+.+-+|.++++++.++++ +.+ .
T Consensus 51 ~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~-lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 129 (539)
T PF03137_consen 51 SLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA-LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDC 129 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh-ccHhhcCCCccccccccccccccccccccccccccccCccccc
Confidence 356667777888888788888899999999988776 420 0
Q ss_pred ----------HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058 45 ----------IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWI 105 (235)
Q Consensus 45 ----------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~ 105 (235)
+..+++++.++.|+|....++...+|+.|..++ +-+...|++..+..+|.++|-.+++.+.
T Consensus 130 ~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 130 CSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------SSS-----------------------------------------------
T ss_pred cccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 112445668999999999999999999998755 4888899999999999888888877665
No 238
>KOG3626|consensus
Probab=97.35 E-value=0.0013 Score=59.08 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=80.0
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-------------------h---------------------
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-------------------S--------------------- 44 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-------------------~--------------------- 44 (235)
.+...+..++.-|..|-+.+-+|.++++++.++++ +.+ .
T Consensus 146 ~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~a-lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 224 (735)
T KOG3626|consen 146 LLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFA-LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPE 224 (735)
T ss_pred hhhhHhHHHhccccCccceeeechhHHHHHHHHHh-ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCC
Confidence 45566777888888888888899999988888776 420 0
Q ss_pred -----------HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy6058 45 -----------IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIE 106 (235)
Q Consensus 45 -----------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~ 106 (235)
.+.+++...++.|+|....++...+|+-+...+ +-....|+..++..+|.++|-++++++..
T Consensus 225 ~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 225 NSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred cccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 233455668889999999999999999998755 58888999999999999999888888754
No 239
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.27 E-value=0.0093 Score=50.32 Aligned_cols=115 Identities=20% Similarity=0.170 Sum_probs=76.3
Q ss_pred chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHHH
Q psy6058 6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSL 85 (235)
Q Consensus 6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~ 85 (235)
+.-+++.++.+|+.-+.-+.+..++..++.++.+ ++++.+.- +++-++.+++.|........+.+ .+++ ...+-
T Consensus 74 ~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va-~~~~v~~~-l~Gv~las~ssg~GE~tfL~lt~-~y~~---~~l~~ 147 (402)
T PF02487_consen 74 LVKLIAPFFIHRVPYWIRILICVALSAAGMLLVA-FSPSVWVR-LLGVVLASLSSGLGEVTFLSLTH-FYGK---SSLSA 147 (402)
T ss_pred HHHHHhHhhhhhccchHHHHHHHHHHHHHHhhee-eccchhHH-HHHHHHHhhhhhhhHHHHHHHHH-hcCc---ccccc
Confidence 3445677788887655555667778888888888 88888744 55567778888877776666544 4554 34566
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhCc--HHHHHHHHHHHHHHHHH
Q psy6058 86 GACGTGIGTFVYAPLTQYWIEEYGW--RGTILLLAGTFLQMCIC 127 (235)
Q Consensus 86 ~~~~~~~g~~l~~~~~~~~~~~~gw--~~~~~~~~~~~~~~~~~ 127 (235)
+.++.+.++.+|+..-..+.+ .|+ |..+.+...+.++..+.
T Consensus 148 wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~ 190 (402)
T PF02487_consen 148 WSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLS 190 (402)
T ss_pred ccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHH
Confidence 777777788888777655555 555 55666655554434333
No 240
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=96.98 E-value=0.023 Score=49.55 Aligned_cols=97 Identities=15% Similarity=0.117 Sum_probs=66.3
Q ss_pred chhhhhHHHhhhhch--h----H-HHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHhhhhhhhHhHHH
Q psy6058 6 LLGPVASSFVDKYGC--R----W-MTILGGIISGTGFVLSATVA---------NSIEAQYITFGCIAGCGLSLAYVTAVV 69 (235)
Q Consensus 6 i~~~~~g~l~dr~G~--r----~-~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~l~G~~~g~~~~~~~~ 69 (235)
+.+|+.+++-.|.++ | + =+.+|.++.+++.+++. ++ .+.+++ +..-++.++|+-...|...+
T Consensus 323 ~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~-~~~~~~~~~~~~s~~wl-~~~~~~~t~gEl~~sPvgls 400 (493)
T PRK15462 323 LCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILT-LSARWSAMYGHSSLPLM-VLGLAVMGFAELFIDPVAMS 400 (493)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCcCHHHH-HHHHHHHHHHHHHHChHHHH
Confidence 445666666555522 1 1 15677777777776664 32 134444 55578889999999999999
Q ss_pred HHHhhcccc-hhHHHHHHHhh-HHHHHHHHHHHHHHH
Q psy6058 70 SIAYWFDKK-RTLATSLGACG-TGIGTFVYAPLTQYW 104 (235)
Q Consensus 70 ~~~~~~~~~-rg~~~~~~~~~-~~~g~~l~~~~~~~~ 104 (235)
.+++..|++ +|..+|++... ..+|..++..+++..
T Consensus 401 ~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 401 QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999987 99999998663 356766666665554
No 241
>PRK03612 spermidine synthase; Provisional
Probab=96.97 E-value=0.029 Score=49.31 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=39.1
Q ss_pred HHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHH-hhhCcHHHHHHH
Q psy6058 53 GCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWI-EEYGWRGTILLL 117 (235)
Q Consensus 53 ~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~-~~~gw~~~~~~~ 117 (235)
.++.++..|+..|....+..+...++-|...|-.+....+|+++|..+.+++. ..+|-....++.
T Consensus 117 ~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~ 182 (521)
T PRK03612 117 VLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALT 182 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44557777777666665555433323456667777777778888877766654 355644443333
No 242
>KOG3098|consensus
Probab=96.95 E-value=0.0027 Score=54.39 Aligned_cols=97 Identities=12% Similarity=-0.009 Sum_probs=78.3
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA 82 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~ 82 (235)
+.+++++++.+.|+.|+|+.+.++......-.+.+. ..+++. + .....+.|+|.+..+.....++++..+++ +.+.
T Consensus 63 ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl-~~N~y~-~-yfssallG~Gaallw~GqG~ylt~~st~~tie~N 139 (461)
T KOG3098|consen 63 FTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFL-FPNSYY-L-YFSSALLGFGAALLWTGQGGYLTSNSTRETIERN 139 (461)
T ss_pred HHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHH-hcchHH-H-HHHHHHhhhhHHheecccceehhhcCChhhHHHH
Confidence 467889999999999999999999999888888776 556554 4 44478889999999999999999988765 8888
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQY 103 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~ 103 (235)
.++.......+.++|..+...
T Consensus 140 isi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 140 ISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred HHHHHHHHHHHHHhhhHhhee
Confidence 888777777777766555433
No 243
>KOG4332|consensus
Probab=96.42 E-value=0.0081 Score=47.82 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=51.3
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHH-HHHhhc
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVV-SIAYWF 75 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~-~~~~~~ 75 (235)
++...+.|.++||-|||+.-+.-++...++|+.- .++++-.+ .++|++.|++.+..+...-+ +++|.-
T Consensus 86 mLFGtivgSLaDkqGRKracvtycitYiLsCiTK--hSpqYkVL-mVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 86 MLFGTIVGSLADKQGRKRACVTYCITYILSCITK--HSPQYKVL-MVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHhhhccccceeeehHHHHHHHHhh--cCCceEEE-eehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4556778899999999998777777777776655 46777655 66699999999988888776 455544
No 244
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.36 E-value=0.032 Score=47.08 Aligned_cols=93 Identities=17% Similarity=0.089 Sum_probs=64.4
Q ss_pred ccchhhhhHHHhhhhchhHHHH-HHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTI-LGGIISGTGFVLSATVANS--IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r 79 (235)
.++.+|+.|.++|..|+|+..+ +...+..++.++.. +.++ ++.+.++..++..++.....+...+++.+..+++ -
T Consensus 71 ia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~-~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~ 149 (438)
T COG2270 71 IALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLW-FIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNM 149 (438)
T ss_pred HHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCcccc
Confidence 3567899999999999776555 44455555666666 5544 6555455567777888888888889999988774 6
Q ss_pred hHHHHHHHhhHHHHHHHH
Q psy6058 80 TLATSLGACGTGIGTFVY 97 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~ 97 (235)
++..++-.....+|+.+.
T Consensus 150 ~riS~lg~~~gylgs~i~ 167 (438)
T COG2270 150 GRISGLGWALGYLGSVIL 167 (438)
T ss_pred CcccccccccccccchHH
Confidence 777777555556665543
No 245
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.25 E-value=0.33 Score=41.68 Aligned_cols=124 Identities=10% Similarity=0.052 Sum_probs=68.9
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHH----HHHHHHHHH-hh--ch----HHHH--HHHHHHHHHhhhhhhhHhHHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIIS----GTGFVLSAT-VA--NS----IEAQ--YITFGCIAGCGLSLAYVTAVVS 70 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~----~~~~~~~~~-~~--~~----~~~l--~i~~~~l~G~~~g~~~~~~~~~ 70 (235)
.++.++..|.+.||..|.+++..+.++. ++++.+... +. .. .+.. +.+.-++.|.-.-.........
T Consensus 51 ~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~ia 130 (432)
T PF06963_consen 51 AILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIA 130 (432)
T ss_pred HHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 4577889999999999988876665433 333322220 11 10 1111 1111222232222222222222
Q ss_pred HH-hhcc-------cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 71 IA-YWFD-------KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 71 ~~-~~~~-------~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
+. ||.. ..+.+.++...-.=.+...++|.+.+.+.+..+.+....+.++..++..+.
T Consensus 131 vERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 131 VERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred eccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 32 4531 124455555544445688999999999999888888777777766665555
No 246
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.21 E-value=0.27 Score=42.75 Aligned_cols=97 Identities=10% Similarity=-0.092 Sum_probs=65.4
Q ss_pred hhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh----ch---------------------------HHHHHHHHHHH
Q psy6058 7 LGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA----NS---------------------------IEAQYITFGCI 55 (235)
Q Consensus 7 ~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~---------------------------~~~l~i~~~~l 55 (235)
..++.+++++|++|++.+.+....+....++++ +. ++ .| .+.+.-+.
T Consensus 60 ~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~-~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W-~~~~FYv~ 137 (472)
T TIGR00769 60 FMLIYTKLSNILSKEALFYTVISPFLGFFALFA-FVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIW-SFALFYVM 137 (472)
T ss_pred HHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHH-HHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhh-hHHHHHHH
Confidence 378899999999999988777766666666555 32 11 11 11121222
Q ss_pred HHhhhhhhhH-hHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058 56 AGCGLSLAYV-TAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWI 105 (235)
Q Consensus 56 ~G~~~g~~~~-~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~ 105 (235)
.-+-...... .....++|.+.. |-.+-.++...+.++|..+++.+..++.
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333444 455778887755 5778899999999999999999988876
No 247
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.01 E-value=0.13 Score=44.47 Aligned_cols=122 Identities=12% Similarity=0.090 Sum_probs=78.8
Q ss_pred cchhhhhHHHhhhhchh-------HHHHHHHHHHHHHHHHHHHhh----------chHHHHHHHHHHHHHhhhhhhhHhH
Q psy6058 5 LLLGPVASSFVDKYGCR-------WMTILGGIISGTGFVLSATVA----------NSIEAQYITFGCIAGCGLSLAYVTA 67 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r-------~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~l~G~~~g~~~~~~ 67 (235)
++.+|+..++.-+.+++ .-+-+|..+++.+.+++. .. .+.+++ +..-+++++|+=+..+..
T Consensus 338 ii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~-~~~~~~~~~~~~~s~~~l-il~y~l~s~gEL~iSpvG 415 (498)
T COG3104 338 ILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILL-LAGIWFGGPSGLVSVWWL-VLSYVLQSFGELFISPVG 415 (498)
T ss_pred HHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCcCHHHH-HHHHHHHHHHHHHhCHHH
Confidence 35566666666664433 224455556666655554 32 234434 555788899998888999
Q ss_pred HHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHH------HHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 68 VVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQY------WIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 68 ~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~------~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
.+++++..|+. .+..++++......|..++..+++. ..+...-...|+..+...++..+..
T Consensus 416 Ls~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~ 483 (498)
T COG3104 416 LSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL 483 (498)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999998887 8899999888888888877777663 2233344556666665554444443
No 248
>KOG1237|consensus
Probab=95.93 E-value=0.046 Score=48.58 Aligned_cols=124 Identities=14% Similarity=0.072 Sum_probs=86.4
Q ss_pred ccchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhchH----------------------HH--HHHHHHHHHHh
Q psy6058 4 PLLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVANSI----------------------EA--QYITFGCIAGC 58 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~--l~i~~~~l~G~ 58 (235)
....++++++++|-| ||-+.+.++.++..++.++.. .+... .+ ++....-+..+
T Consensus 86 ~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt-~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~ 164 (571)
T KOG1237|consen 86 QFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLT-LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIAL 164 (571)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHhee
Confidence 345678899999985 888999999998888865554 32111 11 11222344466
Q ss_pred hhhhhhHhHHHHHHhhcc----cc-h--hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058 59 GLSLAYVTAVVSIAYWFD----KK-R--TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~----~~-r--g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~ 128 (235)
|.|+.-+.....-++-++ ++ + ..-..++.....+|..++..+..++.++.||...|.+..+..++.++++
T Consensus 165 G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 165 GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 788877888888887665 22 2 3566778888899999998888888889999999988776555544443
No 249
>KOG0637|consensus
Probab=95.78 E-value=0.024 Score=48.33 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=68.1
Q ss_pred ccchhhhhHHHhhh----hchhHH-HHHHHHHHHHHHHHHHHhhchHHH----------------HHHHHHHHHHhhhhh
Q psy6058 4 PLLLGPVASSFVDK----YGCRWM-TILGGIISGTGFVLSATVANSIEA----------------QYITFGCIAGCGLSL 62 (235)
Q Consensus 4 ~~i~~~~~g~l~dr----~G~r~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------l~i~~~~l~G~~~g~ 62 (235)
..+.+|+.|..+|| +|||+. +..+.+...++.++.. ++.++.. ++++..-+.=++...
T Consensus 80 G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig-~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~ 158 (498)
T KOG0637|consen 80 GLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIG-YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNT 158 (498)
T ss_pred cceecccccccccccccccccccchHHHhhHHHHHHHhhhh-hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhh
Confidence 46778999999997 687765 4566677777777776 6544321 222223333455656
Q ss_pred hhHhHHHHHHhhcc-cchhH-HHHHHHhhHHHHHHHHHHHHHHH
Q psy6058 63 AYVTAVVSIAYWFD-KKRTL-ATSLGACGTGIGTFVYAPLTQYW 104 (235)
Q Consensus 63 ~~~~~~~~~~~~~~-~~rg~-~~~~~~~~~~~g~~l~~~~~~~~ 104 (235)
...++=+++.+... .++.+ +++.+..+.++|+.+|..++++.
T Consensus 159 ~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 159 LQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 77777788888763 33433 99999999999999988776643
No 250
>KOG2816|consensus
Probab=95.73 E-value=0.083 Score=45.75 Aligned_cols=99 Identities=10% Similarity=0.057 Sum_probs=77.6
Q ss_pred cchhhhhH-HHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhHH
Q psy6058 5 LLLGPVAS-SFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTLA 82 (235)
Q Consensus 5 ~i~~~~~g-~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~ 82 (235)
.+++.+.. .+...+|-|+.+..|.+.-.++.++.+ ++++.|+++.. .++.+ ..+...+..-+.++.+. ++++|++
T Consensus 291 ~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~a-f~~~~w~~~~~-~v~~~-~~~~~~pa~~s~~s~~v~~~e~g~v 367 (463)
T KOG2816|consen 291 IISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFA-FATETWMMFAA-GVVVA-LAGIVFPAIRAFASILVSPEEQGKV 367 (463)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHH-HhccchhhhHH-HHHHH-hhcchhHHHHhHHHhhcccccccch
Confidence 34455555 677778999999999999999999999 99999977555 44433 35566677777888765 5569999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHh
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIE 106 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~ 106 (235)
.++......+...++|.+-+.+..
T Consensus 368 ~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 368 FGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999998777643
No 251
>KOG2615|consensus
Probab=95.70 E-value=0.053 Score=45.33 Aligned_cols=97 Identities=6% Similarity=0.058 Sum_probs=70.0
Q ss_pred hhhhHHHhhhhc--hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHH
Q psy6058 8 GPVASSFVDKYG--CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATS 84 (235)
Q Consensus 8 ~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~ 84 (235)
+....+..+|.. -+-.+..+..++.-..++.+ .++....+++. ..+..+..+...+.....+....|. +||.++|
T Consensus 314 ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls-~~~~~~~l~~~-s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~G 391 (451)
T KOG2615|consen 314 QLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS-LARTPVVLYLG-STLKSFSTASVVTCLTSLVHKYGPQSQRGTLNG 391 (451)
T ss_pred HHhccccccccccchhhHHHHHHHHHHHHHHHHh-ccccchhhhHH-HHHHHHHHHHhhHHHHHHHHhcCCcccchHHHH
Confidence 333444455554 55566666667666667777 66666555444 5666777777767777788888766 5999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHh
Q psy6058 85 LGACGTGIGTFVYAPLTQYWIE 106 (235)
Q Consensus 85 ~~~~~~~~g~~l~~~~~~~~~~ 106 (235)
+..+...++-++||.++|.+..
T Consensus 392 i~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 392 IFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred HHHHHHHHHHHhhhhhhheeEE
Confidence 9999999999999999988764
No 252
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.58 E-value=0.1 Score=44.88 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=69.7
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF 75 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~ 75 (235)
+++..+..++.-+..-|+++.+..++.++..+...++. ++.+ +.+.--++..+..+..+.+....+++..
T Consensus 269 l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~-f~lgd~~l~~~~~~i~~mP~lvl~a~lc 347 (433)
T PF03092_consen 269 LLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQW-FALGDTILEEVIGMIAFMPSLVLAARLC 347 (433)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeE-EEEEhHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34444454555555667777766666655544322111 1111 2223345566667777788888999999
Q ss_pred ccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058 76 DKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYG 109 (235)
Q Consensus 76 ~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g 109 (235)
|+. -|+..++..+..++|..++..++..+.+.++
T Consensus 348 P~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 348 PKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 886 9999999999999999999999988887665
No 253
>KOG2563|consensus
Probab=95.44 E-value=0.023 Score=48.30 Aligned_cols=128 Identities=13% Similarity=-0.009 Sum_probs=77.2
Q ss_pred cccchhhhhHHHhhhhc-hhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHh-hccc
Q psy6058 3 VPLLLGPVASSFVDKYG-CRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAY-WFDK 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G-~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~-~~~~ 77 (235)
+.++++.++|.+.||.+ -|..+++......++.+...... ...+.++.. ..+.|.+....+|...-...| .+|.
T Consensus 313 ~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t-~~~~g~~~~~~~Pig~ElgvE~TyPv 391 (480)
T KOG2563|consen 313 AGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTT-CGLLGFFGTGYLPIGFELGVETTYPV 391 (480)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhh-HHHHHHhhcCCCCcceeeeeeecccc
Confidence 45789999999999976 44555555555555532222011 112223333 455677777777766666666 5788
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC----cHHHHHHHHHHHHHHHHHHhhc
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG----WRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g----w~~~~~~~~~~~~~~~~~~~~~ 131 (235)
.-+...|+.+....+-+.+...+.+...+..+ |...-+..+..+++..++..+.
T Consensus 392 ~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~ 449 (480)
T KOG2563|consen 392 AEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFF 449 (480)
T ss_pred CCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhh
Confidence 77777888777777777777788888877665 4333344444444444444443
No 254
>KOG3098|consensus
Probab=95.35 E-value=0.3 Score=42.17 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=66.7
Q ss_pred chhhhhHHHhhh---hchhHHHHHHHHHHHHHHHHHHHhh-c-----------------hHHHHHHHHHHHHHhhhhhhh
Q psy6058 6 LLGPVASSFVDK---YGCRWMTILGGIISGTGFVLSATVA-N-----------------SIEAQYITFGCIAGCGLSLAY 64 (235)
Q Consensus 6 i~~~~~g~l~dr---~G~r~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~l~i~~~~l~G~~~g~~~ 64 (235)
++....+.+.+| +|+++.+.++..+..+++++.. .. + ++... .+..++.|++-+...
T Consensus 294 ~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~-l~~p~dap~~~t~~~~~~~~~~~~~~-~ii~~l~G~~D~~~~ 371 (461)
T KOG3098|consen 294 IGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIH-LSFPNDAPLRPTDSPPLLFTPSYYLA-LIIGFLLGFGDACFN 371 (461)
T ss_pred HHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHh-ccccccCCCCCCcccccccccchhHH-HHHHHHHhhHHHHHH
Confidence 345556666654 7999999999998888887765 33 1 22222 344788899888888
Q ss_pred HhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHHH
Q psy6058 65 VTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPL 100 (235)
Q Consensus 65 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~ 100 (235)
.....++....|++|..+.++.-.-..++..++-..
T Consensus 372 t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 372 TQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 888889998888888888888777777776654333
No 255
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=94.37 E-value=0.6 Score=39.63 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=48.2
Q ss_pred hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy6058 41 VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTLATSLGACGTGIGTFVYAPLTQYW 104 (235)
Q Consensus 41 ~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~l~~~~~~~~ 104 (235)
+.++.|.++ +..+..|+..|..++.....+.+-. +++|..++|...++-.+|..++..++-.+
T Consensus 331 fipsi~ivf-~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 331 FIPSIWIVF-VLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HhhHHHHHH-HHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 346777553 4477789999999999988887654 45699999999999888888877765443
No 256
>PF12832 MFS_1_like: MFS_1 like family
Probab=94.15 E-value=0.041 Score=35.04 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=23.7
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIIS 31 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~ 31 (235)
...++++++|.++||+++++.++.+..++
T Consensus 47 ~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 47 IRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34678999999999999998887776554
No 257
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=93.51 E-value=0.14 Score=33.24 Aligned_cols=46 Identities=15% Similarity=-0.033 Sum_probs=40.1
Q ss_pred ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHH
Q psy6058 2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQ 48 (235)
Q Consensus 2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l 48 (235)
++|++|.+...++.++..+++.+..+.+...++.+.++ +.++.+.+
T Consensus 38 ~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma-~~~~~~~w 83 (85)
T PF06779_consen 38 LGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA-LTHSFWLW 83 (85)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHhchHHH
Confidence 46889999999999998889999999999999999999 88877643
No 258
>KOG1330|consensus
Probab=92.81 E-value=0.28 Score=42.14 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=54.7
Q ss_pred cccchhhhhHHHhhhhc----hhHHHHHHHHHH-------HHHHHHHHHhhchHHHHHHHHHHHHHhhhhh-hhHhHHHH
Q psy6058 3 VPLLLGPVASSFVDKYG----CRWMTILGGIIS-------GTGFVLSATVANSIEAQYITFGCIAGCGLSL-AYVTAVVS 70 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G----~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~-~~~~~~~~ 70 (235)
+..+|..++|.++||+. +-....+.-+.. +...++.. ...+....+....++.|..... .+.+..-+
T Consensus 295 ~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~-~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i 373 (493)
T KOG1330|consen 295 GGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP-AFTSSSMIFGLILFLVGETISWFNWATNNPI 373 (493)
T ss_pred hchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhcccccccce
Confidence 56788889999999842 211111111111 11112222 2222221212224444543333 23333345
Q ss_pred HHhhc-ccchhHHHHHHHhhHH-HHHHHHHHHHHHHHhhh-CcH
Q psy6058 71 IAYWF-DKKRTLATSLGACGTG-IGTFVYAPLTQYWIEEY-GWR 111 (235)
Q Consensus 71 ~~~~~-~~~rg~~~~~~~~~~~-~g~~l~~~~~~~~~~~~-gw~ 111 (235)
..+.. |++|..+.++..+..- +|.+-+|.+.+.+.++. ||+
T Consensus 374 ~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~ 417 (493)
T KOG1330|consen 374 FLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK 417 (493)
T ss_pred eeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence 55654 5569999998665554 44455565888888763 565
No 259
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=90.18 E-value=10 Score=33.40 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=24.0
Q ss_pred hHhHHHHHHhh-cccchhHHHHHHHhhHHHHHHHHHHHH
Q psy6058 64 YVTAVVSIAYW-FDKKRTLATSLGACGTGIGTFVYAPLT 101 (235)
Q Consensus 64 ~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~l~~~~~ 101 (235)
..+.=.+.-.. .+++++.|.....++...|-+++-.+.
T Consensus 136 DIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF 174 (544)
T PF13000_consen 136 DIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF 174 (544)
T ss_pred CceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence 33333433333 355688888888888888877765553
No 260
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=88.31 E-value=12 Score=32.79 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=51.6
Q ss_pred HHHHHhhhhhhhHhHHHHHHhhccc--chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHH
Q psy6058 53 GCIAGCGLSLAYVTAVVSIAYWFDK--KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQ 123 (235)
Q Consensus 53 ~~l~G~~~g~~~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~ 123 (235)
-++.|+.....+..--..+.+.+|. +|...+|-+....++.+.+...+.+.+.+.+||.....+.-++.++
T Consensus 273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445666666666555677777665 3888899888888888877777778999999999877665554444
No 261
>KOG3574|consensus
Probab=88.03 E-value=3.6 Score=34.95 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=49.3
Q ss_pred hhhHHHhh-----hhchhHHHH------HHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058 9 PVASSFVD-----KYGCRWMTI------LGGIISGTGFVLSATVA-----NSIEAQYITFGCIAGCGLSLAYVTAVVSIA 72 (235)
Q Consensus 9 ~~~g~l~d-----r~G~r~~~~------~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~ 72 (235)
+++.++.| |+|||+.-+ +|.++..++...--... ++...+ ....++.-+..+....+.-.+.-
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~l-t~~f~LLnflaAtQDIAVDgwAL 159 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVAL-TLLFLLLNFLAATQDIAVDGWAL 159 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHH-HHHHHHHHHHHhhhhhhhhHHHH
Confidence 46777888 999997633 33333222221111001 222212 11234445555555566555555
Q ss_pred hh-cccchhHHHHHHHhhHHHHHHHHHHH
Q psy6058 73 YW-FDKKRTLATSLGACGTGIGTFVYAPL 100 (235)
Q Consensus 73 ~~-~~~~rg~~~~~~~~~~~~g~~l~~~~ 100 (235)
.. -|++.|-+.....++...|.+++..+
T Consensus 160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 160 TMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 54 46678888888888777777776554
No 262
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=87.31 E-value=1.2 Score=38.84 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=53.8
Q ss_pred ccchhhhhHHHhhhhchh--HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 4 PLLLGPVASSFVDKYGCR--WMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
.+++++..|++-.++.+- ..+-+..++.+...++++ ..+|+|..++. -++.+.......+....-++....++ .|
T Consensus 311 ga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-~t~~Iw~~Y~~-yvlf~~~y~flitia~~~iA~~L~~~~~a 388 (511)
T TIGR00806 311 GAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-QSHDIWVLYVT-YVLFRGIYQFLVPIATFQIASSLSKELCA 388 (511)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-cccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccceE
Confidence 456778888887666442 334444455666667777 88999976555 56667667666666666666555454 57
Q ss_pred HHHHHHHh
Q psy6058 81 LATSLGAC 88 (235)
Q Consensus 81 ~~~~~~~~ 88 (235)
...|+.+.
T Consensus 389 LvFGiNtf 396 (511)
T TIGR00806 389 LVFGINTF 396 (511)
T ss_pred EEEecHHH
Confidence 77776554
No 263
>KOG2325|consensus
Probab=86.44 E-value=0.26 Score=42.81 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=56.0
Q ss_pred HHHHhhhhhhhHhHHHHHHhhc-ccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058 54 CIAGCGLSLAYVTAVVSIAYWF-DKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 54 ~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 127 (235)
++.|++.-.......+.-++.. |++++.+.+++.....++..++|.+.......+|.|+.+.+.+...++...+
T Consensus 396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l 470 (488)
T KOG2325|consen 396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAAL 470 (488)
T ss_pred heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHH
Confidence 4445555444455556666765 7789999999999999999999999999999999998887766655444444
No 264
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=85.06 E-value=18 Score=31.25 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHH
Q psy6058 50 ITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYA 98 (235)
Q Consensus 50 i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~ 98 (235)
++..++.|++.+........+.+...|+. +..+..+.++++.++.
T Consensus 110 ~~~v~~~g~~~~~~q~s~~gla~~fp~~~----~~a~~~G~g~aGv~~s 154 (437)
T TIGR00939 110 MASVVIINSGMALLQGSLFGLAGVFPSTY----SSAVMSGQGLAGVLTS 154 (437)
T ss_pred HHHHHHHHhhhhhhcccchhhcccCCHHH----HHHHHhcchhHHHHHH
Confidence 33456678888777777777666544332 2333344444444433
No 265
>KOG3097|consensus
Probab=84.63 E-value=3.5 Score=34.16 Aligned_cols=96 Identities=9% Similarity=0.106 Sum_probs=61.5
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc---ch--
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK---KR-- 79 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~---~r-- 79 (235)
+.++++.+.+..++|-|+.+.++...........- -+.+..+ +-..+..|++.+..+..--.|+++.-.+ .|
T Consensus 72 ~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl--~pr~~tl-VPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~ 148 (390)
T KOG3097|consen 72 IDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL--EPRYETL-VPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGE 148 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc--chhHHhh-ccHHHhhccccccccccCcceecHHHHHHHHhhhh
Confidence 45677788999999999999888777665544332 2444445 5557888999988887776666654322 24
Q ss_pred -----------hHHHHHHHhhHHHHHHHHHHHHHH
Q psy6058 80 -----------TLATSLGACGTGIGTFVYAPLTQY 103 (235)
Q Consensus 80 -----------g~~~~~~~~~~~~g~~l~~~~~~~ 103 (235)
|....+++.+.-.|..+...+...
T Consensus 149 q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~ 183 (390)
T KOG3097|consen 149 QAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTL 183 (390)
T ss_pred hccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445555555665555555433
No 266
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=84.13 E-value=27 Score=30.81 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=47.1
Q ss_pred HHHHhhhhhhhHhHHHHHHhhccc--chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHH
Q psy6058 54 CIAGCGLSLAYVTAVVSIAYWFDK--KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTF 121 (235)
Q Consensus 54 ~l~G~~~g~~~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~ 121 (235)
+..|+........--..+.+.+|. ++...+|-+....++-+.+...+++.+....||+....+.-++.
T Consensus 290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~ 359 (491)
T PF03219_consen 290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVI 359 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHH
Confidence 334555555555555666666655 37777887777777777777788899999999998877654433
No 267
>KOG3810|consensus
Probab=81.78 E-value=3.3 Score=34.65 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=75.0
Q ss_pred hhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhHHHHHHH
Q psy6058 9 PVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTLATSLGA 87 (235)
Q Consensus 9 ~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~~~~~~ 87 (235)
.+.=.+.|-.--|++++.-.+.......+.. +.++.+.+-+. -+..|...+ ...+.++++-.-. |+++-++.+..-
T Consensus 60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv-~g~sV~~mQvl-E~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~R 136 (433)
T KOG3810|consen 60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLV-FGPSVKAMQVL-EFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCR 136 (433)
T ss_pred HHHHHHhhhhhcceeeeeeccchhHHHHHHH-hcCCchheeee-hhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhH
Confidence 3344566777778888777777777777777 88888766333 666676553 3355556665543 555778888888
Q ss_pred hhHHHHHHHHHHHHHHHHhhh--CcHHHHHHHHHHHHHHHHHHhhcc
Q psy6058 88 CGTGIGTFVYAPLTQYWIEEY--GWRGTILLLAGTFLQMCICGALMK 132 (235)
Q Consensus 88 ~~~~~g~~l~~~~~~~~~~~~--gw~~~~~~~~~~~~~~~~~~~~~~ 132 (235)
.+...|-.+|..++..+...- .+...-++......+..+...+..
T Consensus 137 aA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP 183 (433)
T KOG3810|consen 137 AAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLP 183 (433)
T ss_pred HHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCC
Confidence 887788877777766665432 233333343333444444444433
No 268
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.41 E-value=2 Score=28.95 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhH
Q psy6058 31 SGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTA 67 (235)
Q Consensus 31 ~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~ 67 (235)
..++.++--++.++.|.+ ++ .++.|++.|...+.-
T Consensus 60 a~iG~llD~~agTsPwgl-Iv-~lllGf~AG~lnv~R 94 (116)
T COG5336 60 AGIGWLLDKFAGTSPWGL-IV-FLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHhcCCCcHHH-HH-HHHHHHHHHHHHHHH
Confidence 334445545133555544 55 567788887655443
No 269
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=78.47 E-value=30 Score=31.99 Aligned_cols=53 Identities=13% Similarity=-0.022 Sum_probs=29.8
Q ss_pred hhhhHHHhhh----hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhh
Q psy6058 8 GPVASSFVDK----YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLS 61 (235)
Q Consensus 8 ~~~~g~l~dr----~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g 61 (235)
..+++-+.|. .||.+-++++.++++++.+... +...+.++++...++.+++.+
T Consensus 40 G~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~-ll~~~p~~~~~~l~~~tf~~~ 96 (701)
T TIGR01667 40 GIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQ-LLFPKPWLFPFLLTLLTFGFI 96 (701)
T ss_pred hhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHH
Confidence 3444555654 3566777777777777777666 544444343443444444433
No 270
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=78.30 E-value=48 Score=29.27 Aligned_cols=101 Identities=16% Similarity=0.013 Sum_probs=60.2
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---------chH-H------------HH--------HHHHHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---------NSI-E------------AQ--------YITFGC 54 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~-~------------~l--------~i~~~~ 54 (235)
.+...+..++++++++.++..+....+....++++ +. ++. + .+ +...-+
T Consensus 73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~-~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFA-FVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-HHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 45567788999999999987766655555554444 21 111 0 00 001011
Q ss_pred HHHhhhhhhhH-hHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy6058 55 IAGCGLSLAYV-TAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIE 106 (235)
Q Consensus 55 l~G~~~g~~~~-~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~ 106 (235)
..-+-.....+ ......++.++. |-.+..++...+.++|..+++.+..++.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112222 234566777644 57788999999999999999888888777
No 271
>KOG3762|consensus
Probab=77.73 E-value=1.6 Score=38.45 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=26.2
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHH-HHHHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTG-FVLSA 39 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~-~~~~~ 39 (235)
+.+++.|++|+++||+-+|+.+++|.++..+. .++..
T Consensus 58 v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~ 95 (618)
T KOG3762|consen 58 VEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLV 95 (618)
T ss_pred HHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhee
Confidence 45788999999999998777776666554443 44443
No 272
>KOG4332|consensus
Probab=77.16 E-value=26 Score=28.53 Aligned_cols=72 Identities=7% Similarity=-0.050 Sum_probs=40.7
Q ss_pred HHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058 53 GCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124 (235)
Q Consensus 53 ~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~ 124 (235)
..+.-.+.|..+|.+..+-+++.|++ |...+.++-.-..+-..++-...-.-....+-|..|-+..+...+.
T Consensus 351 F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 351 FCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred HHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence 44456778889999988888998886 8887776554333332222111000011134556666655544443
No 273
>KOG3880|consensus
Probab=77.00 E-value=20 Score=29.72 Aligned_cols=70 Identities=19% Similarity=0.018 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHH-hhcccchhHHHHHHHhhHHHHHHHHHHHH
Q psy6058 30 ISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIA-YWFDKKRTLATSLGACGTGIGTFVYAPLT 101 (235)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~-~~~~~~rg~~~~~~~~~~~~g~~l~~~~~ 101 (235)
++.+.-.+.. +.++++..+++ -+.-|+-.|..++...--+. |.-|.+|-.+++...++-.+|..++..++
T Consensus 328 ~ff~~~a~~~-ftpsi~ivf~l-I~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la 398 (409)
T KOG3880|consen 328 LFFLLQAWYW-FTPSIWIVFAL-ILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA 398 (409)
T ss_pred HHHHHHHHHH-hccHHHHHHHH-HHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence 3333344455 66787755333 55558877777777765554 57788899999998888777777666554
No 274
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=75.98 E-value=39 Score=31.28 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=28.3
Q ss_pred hhhhhHHHhhh----hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhh
Q psy6058 7 LGPVASSFVDK----YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60 (235)
Q Consensus 7 ~~~~~g~l~dr----~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~ 60 (235)
...+++-++|. -||.+-++++.+++.++.+... +...+.++++...++.+++.
T Consensus 39 LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~-ll~~~p~lf~~~l~~~tf~~ 95 (704)
T TIGR01666 39 LGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVE-LLFGKPWLFAVGLTVSTFGF 95 (704)
T ss_pred HHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcHHHHHHHHHHHHHH
Confidence 34445556664 3566666777777776666665 44433334344344444443
No 275
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=75.27 E-value=34 Score=31.35 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=35.1
Q ss_pred HHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy6058 53 GCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYW 104 (235)
Q Consensus 53 ~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~ 104 (235)
-++.++|.........-....-.|++ +..+.+++....++|..+...+...-
T Consensus 572 ~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~ 624 (654)
T TIGR00926 572 YVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFE 624 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667777665555544444455666 88888888888888888776664443
No 276
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=75.00 E-value=42 Score=27.04 Aligned_cols=13 Identities=8% Similarity=-0.110 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy6058 27 GGIISGTGFVLSA 39 (235)
Q Consensus 27 ~~~~~~~~~~~~~ 39 (235)
+.+.++++.++..
T Consensus 5 ~~~~~~~~s~~~~ 17 (284)
T PF12805_consen 5 TLLCFALASLLVG 17 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 3333434433333
No 277
>PRK10263 DNA translocase FtsK; Provisional
Probab=72.12 E-value=67 Score=31.95 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058 92 IGTFVYAPLTQYWIEEYGWRGTILLLAG 119 (235)
Q Consensus 92 ~g~~l~~~~~~~~~~~~gw~~~~~~~~~ 119 (235)
.|+++|..+...+...+|..+.++++.+
T Consensus 142 gGGIIG~lLs~lL~~LfG~vGa~LILLl 169 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSGGTIALLC 169 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4666666666666666665555444333
No 278
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=71.74 E-value=42 Score=25.56 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=13.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 86 GACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 86 ~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
......++-.+|..+++.+.+..+.
T Consensus 167 ~~~~~i~~f~~Ga~~ga~l~~~~~~ 191 (209)
T PF06912_consen 167 RYLLIILSFFIGAILGALLYRRLGF 191 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444445555555666666664
No 279
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=71.06 E-value=54 Score=28.39 Aligned_cols=97 Identities=10% Similarity=-0.065 Sum_probs=57.2
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHH--Hhhch----HHHH--HHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSA--TVANS----IEAQ--YITFGCIAGCGLSLAYVTAVVSIAYWF 75 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~--~~~~~----~~~l--~i~~~~l~G~~~g~~~~~~~~~~~~~~ 75 (235)
...+..++.++.+|+|..+.-+++......+..+.. ++.+. .... ++.+-++.=+|.=...-...-++-|..
T Consensus 306 Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V 385 (432)
T PF06963_consen 306 GLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENV 385 (432)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccC
Confidence 456788889999999988888888775554443332 02211 2111 122122222333233344445666666
Q ss_pred cc-chhHHHHHHHhhHHHHHHHHHHH
Q psy6058 76 DK-KRTLATSLGACGTGIGTFVYAPL 100 (235)
Q Consensus 76 ~~-~rg~~~~~~~~~~~~g~~l~~~~ 100 (235)
|+ +||...|.-.....+...+...+
T Consensus 386 ~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 386 PESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred CHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 66 59999999888887777665444
No 280
>KOG0637|consensus
Probab=68.19 E-value=3 Score=36.06 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=58.5
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc---------
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF--------- 75 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~--------- 75 (235)
.+.+....++++|+|-|+.+..+...+.++..+.. ...+.+..... +-..|+-.+.....-...++.+.
T Consensus 346 gi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~g-l~~~~~~~~~~-~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t 423 (498)
T KOG0637|consen 346 GIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAG-LVLNTYVVLSH-RSTAGILSSPLLTVPYGALALYAILGIPLAIT 423 (498)
T ss_pred HHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHh-hhhhHHHHHHH-HhhcceeecchhcccHHHHHHHHHhCCccccc
Confidence 46677888999999977777777766666666666 55555434222 44445333222222222222110
Q ss_pred -------------ccc--hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 76 -------------DKK--RTLATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 76 -------------~~~--rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
+.. +|...|+.+++..+-..+.....+.+.+..|-
T Consensus 424 ~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~ 473 (498)
T KOG0637|consen 424 FSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGG 473 (498)
T ss_pred cccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCC
Confidence 111 45556667777777766666666776666553
No 281
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=67.96 E-value=26 Score=25.48 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=20.3
Q ss_pred HhHHHHHH-hhcccchhHHHHHHHhhHHHHHH
Q psy6058 65 VTAVVSIA-YWFDKKRTLATSLGACGTGIGTF 95 (235)
Q Consensus 65 ~~~~~~~~-~~~~~~rg~~~~~~~~~~~~g~~ 95 (235)
...+.+++ .|-|.+-|...|+-..-.+++-+
T Consensus 113 GisYGilSaSWD~~r~GSllG~~e~~~N~~r~ 144 (153)
T PF11947_consen 113 GISYGILSASWDPEREGSLLGWEEFKRNWGRM 144 (153)
T ss_pred hhhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence 44445555 57777788888887766666543
No 282
>KOG1237|consensus
Probab=67.78 E-value=29 Score=31.25 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058 50 ITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEE 107 (235)
Q Consensus 50 i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~ 107 (235)
+---++.|++.....+...-...+-+|++ |+.+.+++....++|..+...+.......
T Consensus 462 iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~ 520 (571)
T KOG1237|consen 462 IPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFS 520 (571)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44467889999888777776666666776 99999999999999999998887665443
No 283
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=66.52 E-value=95 Score=28.83 Aligned_cols=110 Identities=17% Similarity=0.121 Sum_probs=53.5
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHH
Q psy6058 18 YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVY 97 (235)
Q Consensus 18 ~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~ 97 (235)
+|.|+..-+|.+...++.....-.+-+...+--..|+..|...|... ...+++..+++.+..+..-.+.+++....
T Consensus 1 ig~n~l~~iG~~~l~lG~~fl~kya~~~g~l~p~~Rv~~g~~~g~~l----~~~g~~l~~k~~~~~~~~L~g~G~a~ly~ 76 (745)
T PF10101_consen 1 IGGNWLVRIGILVLLLGVVFLLKYAIDAGWLGPAVRVALGAALGLAL----LAAGERLRRKGYRAFAQALAGGGIAVLYL 76 (745)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 46677777888777777655431332222232345888777665443 33445554432233333334444444444
Q ss_pred HHHHHHH-HhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 98 APLTQYW-IEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 98 ~~~~~~~-~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
..++++. .+-.+....|....+..+....+....
T Consensus 77 t~~aa~~~y~l~~~~~af~~~~~v~~~~~~la~r~ 111 (745)
T PF10101_consen 77 TVFAAYHLYGLIPPPVAFALLALVTAAAVALALRY 111 (745)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 3443332 233344555555444444444444433
No 284
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=66.31 E-value=36 Score=29.25 Aligned_cols=82 Identities=11% Similarity=-0.002 Sum_probs=45.1
Q ss_pred ccchhhhhHHHhhhhchhHHHH--HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTI--LGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT 80 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg 80 (235)
.+++++..|++-.++.+..-+. ...++.+.+.++++ ..+++|..++. -++.+.......+....-++....++ -|
T Consensus 298 gA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~-~t~~Iwv~Y~~-yIif~~~y~fliTiA~~qIA~~l~~e~ya 375 (412)
T PF01770_consen 298 GAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMS-FTGNIWVCYAG-YIIFRSLYMFLITIASFQIAKNLSEERYA 375 (412)
T ss_pred HHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccee
Confidence 4566777888766665543333 33445556666777 78888866555 44444444444444444444433333 45
Q ss_pred HHHHHHH
Q psy6058 81 LATSLGA 87 (235)
Q Consensus 81 ~~~~~~~ 87 (235)
...|+.+
T Consensus 376 LVFGiNt 382 (412)
T PF01770_consen 376 LVFGINT 382 (412)
T ss_pred eeeeeHH
Confidence 5555443
No 285
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=64.60 E-value=70 Score=25.40 Aligned_cols=30 Identities=10% Similarity=0.235 Sum_probs=15.6
Q ss_pred HHHhhcccchhHHHHHHHhhHHHHHHHHHHH
Q psy6058 70 SIAYWFDKKRTLATSLGACGTGIGTFVYAPL 100 (235)
Q Consensus 70 ~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~ 100 (235)
.++...| +|.....+...++.+|..+...+
T Consensus 56 ~~~k~lP-rk~~~~~~l~gg~~~~~y~l~~~ 85 (249)
T PF10225_consen 56 QLSKLLP-RKSMFYAVLYGGWSFGLYFLQQL 85 (249)
T ss_pred HHHHHcc-CcchhHHHHhhhhHHHHHHHHHH
Confidence 4556778 44444444444445555444444
No 286
>KOG3880|consensus
Probab=63.69 E-value=22 Score=29.50 Aligned_cols=121 Identities=18% Similarity=0.135 Sum_probs=60.0
Q ss_pred hhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHh
Q psy6058 9 PVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGAC 88 (235)
Q Consensus 9 ~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~ 88 (235)
+.+..+.||+.-..=+.+..++.+.+.++.+ ++++.++- +++-.+..++.|........+.+.+.+. ..+.+..
T Consensus 80 l~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVa-fs~s~~~s-L~GV~~aSissGlGEiTFL~lss~Y~~~----~i~~WSS 153 (409)
T KOG3880|consen 80 LTAPFFIHRFPFGFRIALVVLLSALSFFLVA-FSNSVPMS-LLGVVFASISSGLGEITFLALSSRYPSI----VIAGWSS 153 (409)
T ss_pred HhchhhhhhcccchHHHHHHHHHhcceEEEE-eccchhHH-HhhhhhhhhcCCcceeehhhhhccCCCc----eeccccC
Confidence 4455677775333223445566677777777 78888744 4445555666666555444443333222 2223333
Q ss_pred hHHHHHHHHHHHHHHHHhh--hCcHHHHHHHHHHHH-HHHHHHhhccCCc
Q psy6058 89 GTGIGTFVYAPLTQYWIEE--YGWRGTILLLAGTFL-QMCICGALMKDPE 135 (235)
Q Consensus 89 ~~~~g~~l~~~~~~~~~~~--~gw~~~~~~~~~~~~-~~~~~~~~~~~~~ 135 (235)
+.+.++.+|..--..+.+. ..-|...++...+.+ .....++..++|+
T Consensus 154 GTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pe 203 (409)
T KOG3880|consen 154 GTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPE 203 (409)
T ss_pred CCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCc
Confidence 3334444544433344432 344555555554433 3333344444443
No 287
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=60.49 E-value=86 Score=25.02 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=5.3
Q ss_pred HHHHHHHHHhhcc
Q psy6058 120 TFLQMCICGALMK 132 (235)
Q Consensus 120 ~~~~~~~~~~~~~ 132 (235)
+.++...+..+++
T Consensus 124 l~~~~~~~f~fik 136 (254)
T PF07857_consen 124 LVLVSGIIFSFIK 136 (254)
T ss_pred HHHHHHHheeeec
Confidence 3444444434443
No 288
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=59.27 E-value=9.9 Score=30.34 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=31.4
Q ss_pred chhHHHHHHHhhHHHHHHHH--HHHHH---HHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058 78 KRTLATSLGACGTGIGTFVY--APLTQ---YWIEEYGWRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~--~~~~~---~~~~~~gw~~~~~~~~~~~~~~~~~~~~~ 131 (235)
+|+..+.+...++.+|+++. |.+.. .-.-...|++.+.+.+++.++.+++..++
T Consensus 3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555666667776654 22222 01112359999988887776666665554
No 289
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=57.19 E-value=91 Score=26.17 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=10.0
Q ss_pred cchhhhhHHHhhhhc
Q psy6058 5 LLLGPVASSFVDKYG 19 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G 19 (235)
.+.....|++..|+|
T Consensus 9 i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 9 IFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHhC
Confidence 445567778887764
No 290
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=55.04 E-value=1.2e+02 Score=26.22 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhHHHHHHHhhHHHHHHHHHHHH
Q psy6058 50 ITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTLATSLGACGTGIGTFVYAPLT 101 (235)
Q Consensus 50 i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~l~~~~~ 101 (235)
++..++.|+..|-.......+..+.. +++|..+..+...+..+|-.+|..++
T Consensus 376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 376 IILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44478889988887777777777654 44588888888888888877776664
No 291
>KOG1479|consensus
Probab=51.42 E-value=1.6e+02 Score=25.36 Aligned_cols=26 Identities=0% Similarity=-0.181 Sum_probs=16.9
Q ss_pred HHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 53 GCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 53 ~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
-++.+++.|..........+...++.
T Consensus 124 vv~~~~a~a~~qgs~~G~a~~~P~~y 149 (406)
T KOG1479|consen 124 VVLLNLANAVVQGSLYGLAGLFPSEY 149 (406)
T ss_pred HHHHhhhhhhhccchhhhhhcCCHHH
Confidence 55667777777776666666655554
No 292
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=49.27 E-value=6.2 Score=27.78 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy6058 111 RGTILLLAGT 120 (235)
Q Consensus 111 ~~~~~~~~~~ 120 (235)
||+++++.++
T Consensus 1 RW~l~~iii~ 10 (130)
T PF12273_consen 1 RWVLFAIIIV 10 (130)
T ss_pred CeeeHHHHHH
Confidence 3445444433
No 293
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=49.23 E-value=79 Score=22.56 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=26.6
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHhhch-HH-HHHHHHHHHHHhhhhhhhH
Q psy6058 18 YGCRWMTILGGIISGTGFVLSATVANS-IE-AQYITFGCIAGCGLSLAYV 65 (235)
Q Consensus 18 ~G~r~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~i~~~~l~G~~~g~~~~ 65 (235)
+.+...+++..++..++++.++++... .+ .+-...|+++|+..|....
T Consensus 75 ~~~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vl 124 (142)
T PF11712_consen 75 VKRQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVL 124 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 345556666667777776666621222 11 1234458888877665443
No 294
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=48.99 E-value=28 Score=20.18 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=3.2
Q ss_pred HHHHHhhh
Q psy6058 53 GCIAGCGL 60 (235)
Q Consensus 53 ~~l~G~~~ 60 (235)
.++.|+..
T Consensus 38 g~llG~~~ 45 (55)
T PF09527_consen 38 GLLLGIAA 45 (55)
T ss_pred HHHHHHHH
Confidence 33444433
No 295
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=48.81 E-value=1.4e+02 Score=24.00 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=17.2
Q ss_pred cccchhhhhHHHhhh-hchhHHHH----HHHHHHHHHHHH
Q psy6058 3 VPLLLGPVASSFVDK-YGCRWMTI----LGGIISGTGFVL 37 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr-~G~r~~~~----~~~~~~~~~~~~ 37 (235)
++++|.+..|.+... +.||+.+. .+.++..++.++
T Consensus 153 g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~ 192 (267)
T PF07672_consen 153 GYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVV 192 (267)
T ss_pred HHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555556665554 45665543 334444444444
No 296
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.28 E-value=86 Score=21.37 Aligned_cols=31 Identities=6% Similarity=0.141 Sum_probs=21.1
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEY 108 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 108 (235)
.++.+.++-...=.+++.+...+.+++.+++
T Consensus 39 ~k~~~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 39 IKGYAQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777755555666666666678888876
No 297
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=47.89 E-value=1.2e+02 Score=27.02 Aligned_cols=60 Identities=12% Similarity=0.320 Sum_probs=34.8
Q ss_pred HHHHhhhhhhhHhHHHH----HHhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhh---CcHHH
Q psy6058 54 CIAGCGLSLAYVTAVVS----IAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEY---GWRGT 113 (235)
Q Consensus 54 ~l~G~~~g~~~~~~~~~----~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~---gw~~~ 113 (235)
.+.|.|.-........+ +....|.+||.........+.+++.++..+++.+...+ .|+..
T Consensus 266 ~lvG~G~Qll~~~~~~~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~ 332 (521)
T PF02990_consen 266 ALVGTGIQLLFMALVTLFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKN 332 (521)
T ss_pred hHhcchhhhhHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeeh
Confidence 44555555444333322 22234666888887777777777777777776665543 36543
No 298
>KOG3810|consensus
Probab=47.83 E-value=31 Score=29.11 Aligned_cols=83 Identities=12% Similarity=0.044 Sum_probs=49.2
Q ss_pred ccchhhhhHHHhhhhchh--HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058 4 PLLLGPVASSFVDKYGCR--WMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT 80 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg 80 (235)
.+++.+..|.+--++.|. ..+.++.+..+.+.++++ .++++|..++. -++...-.....+....-++....+ .-|
T Consensus 284 Ga~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~-~t~~Iw~~Ya~-yvlfr~~y~l~itiA~~~iA~nL~~e~~g 361 (433)
T KOG3810|consen 284 GAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA-QTQHIWVCYAG-YVLFRVIYQLTITIATFQIARNLSSELFG 361 (433)
T ss_pred HHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh-cccceehhhhh-HHHHHhhHhhhhhHHHHHHHHhhhhhhhe
Confidence 456777778777666554 445555666666677777 78888866444 4444444444444444445544333 366
Q ss_pred HHHHHHHh
Q psy6058 81 LATSLGAC 88 (235)
Q Consensus 81 ~~~~~~~~ 88 (235)
...|+.+.
T Consensus 362 LvFGiNTF 369 (433)
T KOG3810|consen 362 LVFGINTF 369 (433)
T ss_pred eeeehHHH
Confidence 66666543
No 299
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=47.58 E-value=14 Score=24.97 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=18.2
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVL 37 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~ 37 (235)
+.+.++++++..|+.-+-+.=.+|..++.++..+
T Consensus 67 fI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 67 FIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred HHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHh
Confidence 4455666666666655555445555554444433
No 300
>PRK02237 hypothetical protein; Provisional
Probab=46.21 E-value=19 Score=24.46 Aligned_cols=31 Identities=16% Similarity=0.016 Sum_probs=13.6
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGF 35 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~ 35 (235)
.+.++++++..|+.-+-+.=.+|..++.++.
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~ 100 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGM 100 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhH
Confidence 3444455555554444433344444433333
No 301
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=45.39 E-value=96 Score=21.07 Aligned_cols=9 Identities=11% Similarity=-0.016 Sum_probs=3.7
Q ss_pred hhHHHHHHH
Q psy6058 79 RTLATSLGA 87 (235)
Q Consensus 79 rg~~~~~~~ 87 (235)
-|.+.+++.
T Consensus 56 vgvAYAiW~ 64 (106)
T COG2076 56 LGVAYAIWT 64 (106)
T ss_pred hHHHHHHHH
Confidence 344444433
No 302
>PHA03242 envelope glycoprotein M; Provisional
Probab=44.97 E-value=2.1e+02 Score=24.83 Aligned_cols=21 Identities=5% Similarity=-0.132 Sum_probs=10.4
Q ss_pred hhcccchhHHHHHHHhhHHHH
Q psy6058 73 YWFDKKRTLATSLGACGTGIG 93 (235)
Q Consensus 73 ~~~~~~rg~~~~~~~~~~~~g 93 (235)
++.+..-|...|.+.....+|
T Consensus 280 ~Yv~vl~G~~lG~lia~~~l~ 300 (428)
T PHA03242 280 HYVRVLPGPHLGALVAAGIVG 300 (428)
T ss_pred HhhhccccchHHHHHHHHHHH
Confidence 333444666666555444444
No 303
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=44.93 E-value=2e+02 Score=24.52 Aligned_cols=16 Identities=0% Similarity=-0.242 Sum_probs=7.5
Q ss_pred hcccchhHHHHHHHhh
Q psy6058 74 WFDKKRTLATSLGACG 89 (235)
Q Consensus 74 ~~~~~rg~~~~~~~~~ 89 (235)
+.+.+-|...|.....
T Consensus 267 Yv~v~~G~~~G~lia~ 282 (374)
T PF01528_consen 267 YVKVQFGPHLGTLIAC 282 (374)
T ss_pred HhhccccchHHHHHHH
Confidence 3344455555554433
No 304
>PF12832 MFS_1_like: MFS_1 like family
Probab=44.52 E-value=78 Score=19.83 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=33.8
Q ss_pred hhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHH
Q psy6058 60 LSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLA 118 (235)
Q Consensus 60 ~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~ 118 (235)
.|...|-.+.+..+.- --..-.|+......+-..+++++.+.+.|+++.+......+
T Consensus 16 ~g~~~Pfl~~~~~~~G--l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 16 LGCLYPFLPLYLKQLG--LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHhhhhHhhhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 3344444444444311 02233455555556667888999999999988776655433
No 305
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=44.23 E-value=2.3e+02 Score=25.16 Aligned_cols=101 Identities=12% Similarity=-0.059 Sum_probs=61.3
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---------chH-----------------------HHHHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---------NSI-----------------------EAQYIT 51 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~-----------------------~~l~i~ 51 (235)
..+..++.+++.+++.+.++...-...+....++++ +. ++. |. +..
T Consensus 75 avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa-~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws-~s~ 152 (509)
T COG3202 75 AVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFA-FVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWS-YSL 152 (509)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH-HHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchH-HHH
Confidence 456778889999999999987777666666666665 32 110 11 111
Q ss_pred HHHHHHhhhhhhhHhH-HHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy6058 52 FGCIAGCGLSLAYVTA-VVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIE 106 (235)
Q Consensus 52 ~~~l~G~~~g~~~~~~-~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~ 106 (235)
.-++.=+=...+.... .....|.+.. |-.+-.++++.+.+++..++..+..++..
T Consensus 153 ~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 153 FYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1111112122222322 2445566644 46788889999888888888888777765
No 306
>PHA03231 glycoprotein BALF4; Provisional
Probab=42.54 E-value=1.4e+02 Score=28.23 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=9.9
Q ss_pred HHhhHHHHHHHHHHHHHHH
Q psy6058 86 GACGTGIGTFVYAPLTQYW 104 (235)
Q Consensus 86 ~~~~~~~g~~l~~~~~~~~ 104 (235)
..+..+++++++..+.|++
T Consensus 679 g~vv~~v~ga~~SiVsG~~ 697 (829)
T PHA03231 679 GNVVSGVAGAVGSIVSGVI 697 (829)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 3344455556665555554
No 307
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=40.12 E-value=1e+02 Score=19.93 Aligned_cols=55 Identities=13% Similarity=-0.168 Sum_probs=28.7
Q ss_pred hhHhHHHHHHhh-cccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHH
Q psy6058 63 AYVTAVVSIAYW-FDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120 (235)
Q Consensus 63 ~~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~ 120 (235)
..+..+.++.+. +... ..|...++..+|-.+|......+..+...+..+....+.
T Consensus 11 yTplLP~M~~~~~ls~~---~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~ 66 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLS---QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLL 66 (85)
T ss_pred HHhHhHHHHHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 345555666653 3332 224455555666666666666666654444444443333
No 308
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=39.64 E-value=25 Score=20.87 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=14.4
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q psy6058 109 GWRGTILLLAGTFLQMCICG 128 (235)
Q Consensus 109 gw~~~~~~~~~~~~~~~~~~ 128 (235)
|||...++.+.+.++.+.+.
T Consensus 4 g~r~~~~~ggfVg~iG~a~Y 23 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAALY 23 (58)
T ss_pred cccchhhHHHHHHHHHHHHh
Confidence 78888887777766665553
No 309
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=35.22 E-value=2.1e+02 Score=23.57 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHhhhhhhhHhHHHHHHhhc---ccchhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy6058 54 CIAGCGLSLAYVTAVVSIAYWF---DKKRTLATSLGACGTGIGTFVYAPLTQYW 104 (235)
Q Consensus 54 ~l~G~~~g~~~~~~~~~~~~~~---~~~rg~~~~~~~~~~~~g~~l~~~~~~~~ 104 (235)
.+.+.|.+.+.+.....++-.. +++...+.+....+..+..++.|.++.++
T Consensus 116 ~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 116 ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666655555555432 33477788888888888888888887665
No 310
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=32.74 E-value=3.8e+02 Score=24.35 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhc
Q psy6058 110 WRGTILLLAGTFLQMCICGALM 131 (235)
Q Consensus 110 w~~~~~~~~~~~~~~~~~~~~~ 131 (235)
||..-.+.++++...+-..+++
T Consensus 130 ~R~~ei~iGi~~a~~v~~l~~P 151 (650)
T PF04632_consen 130 WRVLEILIGILCATLVSMLFFP 151 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 6766666666554443334444
No 311
>PTZ00370 STEVOR; Provisional
Probab=32.42 E-value=1e+02 Score=25.04 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=7.1
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q psy6058 109 GWRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 109 gw~~~~~~~~~~~~~~~~~ 127 (235)
.|..+-+++.++.++.+++
T Consensus 256 Pygiaalvllil~vvliil 274 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIIL 274 (296)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 3433333333333333333
No 312
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=31.83 E-value=2e+02 Score=24.28 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=23.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058 84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC 125 (235)
Q Consensus 84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~ 125 (235)
+.........+.+...+.+.+.|.+|.|....+.+++..+.+
T Consensus 72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~sc 113 (354)
T PF05631_consen 72 AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSC 113 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 333333444444555555777777777766665555444333
No 313
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=30.34 E-value=4e+02 Score=23.77 Aligned_cols=71 Identities=17% Similarity=0.083 Sum_probs=44.5
Q ss_pred HHHHhhhhhhhHhHHHHHHhhccc--chhHHHHHHHhhHHHH-HHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058 54 CIAGCGLSLAYVTAVVSIAYWFDK--KRTLATSLGACGTGIG-TFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124 (235)
Q Consensus 54 ~l~G~~~g~~~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g-~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~ 124 (235)
+..|++.......--.-+.+.+|. ++...+|-++...++- ..+.-.+++.+....||-+.-.+.-++.++.
T Consensus 292 l~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit 365 (509)
T COG3202 292 LAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT 365 (509)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334555555555555566666655 3777777776666666 4455566788888899977666554444444
No 314
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.82 E-value=2.8e+02 Score=21.88 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=31.3
Q ss_pred HHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHH
Q psy6058 53 GCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAP 99 (235)
Q Consensus 53 ~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~ 99 (235)
..-.|+|.|.........+.+.+|+......++....+.+.+..|-.
T Consensus 178 AMasGvGSgSMMaAa~~aL~~~~P~~a~~i~A~AaaSNllt~~~G~Y 224 (241)
T PF11299_consen 178 AMASGVGSGSMMAAASGALAAAYPEMADQILAFAAASNLLTSVTGLY 224 (241)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34468888888888888888888876655555555554444444433
No 315
>COG2855 Predicted membrane protein [Function unknown]
Probab=28.60 E-value=3.3e+02 Score=22.74 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=34.0
Q ss_pred HHHHhhhhhhhHhHHHHHHhhccc---chhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058 54 CIAGCGLSLAYVTAVVSIAYWFDK---KRTLATSLGACGTGIGTFVYAPLTQYWI 105 (235)
Q Consensus 54 ~l~G~~~g~~~~~~~~~~~~~~~~---~rg~~~~~~~~~~~~g~~l~~~~~~~~~ 105 (235)
.+.|.|.+.+.......++-..+. +-..+.+....+..++..+.|.+..++.
T Consensus 125 ~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 125 LLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 345666666655555555544432 3556667788888888888888877763
No 316
>KOG3626|consensus
Probab=28.55 E-value=5e+02 Score=24.47 Aligned_cols=61 Identities=13% Similarity=-0.023 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q psy6058 48 QYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEY 108 (235)
Q Consensus 48 l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 108 (235)
+.++.+++.-....+..+-.+.++..-|.-..+.+.-+..+....+.++|-.++|+++.++
T Consensus 396 ~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf 456 (735)
T KOG3626|consen 396 LVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF 456 (735)
T ss_pred HHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence 3344455544455555555556666555333344444444444556677778888887765
No 317
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=28.50 E-value=99 Score=23.34 Aligned_cols=18 Identities=6% Similarity=-0.057 Sum_probs=12.6
Q ss_pred cccchhhhhHHHhhhhch
Q psy6058 3 VPLLLGPVASSFVDKYGC 20 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~ 20 (235)
.+.+++.+.|++.||..+
T Consensus 94 gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 94 GFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 345677777888888764
No 318
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=28.44 E-value=4.6e+02 Score=23.98 Aligned_cols=19 Identities=0% Similarity=0.032 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhCcH
Q psy6058 93 GTFVYAPLTQYWIEEYGWR 111 (235)
Q Consensus 93 g~~l~~~~~~~~~~~~gw~ 111 (235)
+.+++.++++.+.++++.+
T Consensus 379 ~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 379 AAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHhhhhheeeeeccc
Confidence 5567888888888887743
No 319
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=27.64 E-value=3.5e+02 Score=22.60 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=34.5
Q ss_pred HHHHhhhhhhhHhHHHHHHhhc---ccchhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058 54 CIAGCGLSLAYVTAVVSIAYWF---DKKRTLATSLGACGTGIGTFVYAPLTQYWI 105 (235)
Q Consensus 54 ~l~G~~~g~~~~~~~~~~~~~~---~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~ 105 (235)
.+.+.|.+.+.......++... +++.+.+.+....+..+..++.|.+..++.
T Consensus 122 ~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 122 ILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566665555554444432 234778888888888889888888876653
No 320
>PRK11099 putative inner membrane protein; Provisional
Probab=27.00 E-value=4.1e+02 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 50 ITFGCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 50 i~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
++..++.|+|+..........+...-.-+
T Consensus 288 ~lGg~lFG~GmvLaGGC~~g~L~~~GeG~ 316 (399)
T PRK11099 288 VIGGLLFGFGIVLAGGCETGWMYRAVEGQ 316 (399)
T ss_pred HHHHHHHHHHHHHcCCChhhHHHHHcCCC
Confidence 55578888887665554444444443333
No 321
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=26.11 E-value=3.6e+02 Score=21.86 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=18.1
Q ss_pred HHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 53 GCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 53 ~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
|.+.|+-. ..+.+.++.+.-.||++
T Consensus 26 r~~~g~~~-vlf~PGy~l~~~lfp~~ 50 (287)
T PF07760_consen 26 RVILGFPF-VLFLPGYALVAALFPRK 50 (287)
T ss_pred HHHHHHHH-HHHhccHHHHHHHccCc
Confidence 77777655 45577788888888864
No 322
>PF14851 FAM176: FAM176 family
Probab=25.90 E-value=2.7e+02 Score=20.36 Aligned_cols=9 Identities=0% Similarity=-0.215 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy6058 113 TILLLAGTF 121 (235)
Q Consensus 113 ~~~~~~~~~ 121 (235)
.|++.+++.
T Consensus 24 LYFv~gVC~ 32 (153)
T PF14851_consen 24 LYFVSGVCA 32 (153)
T ss_pred HHHHHHHHH
Confidence 344444433
No 323
>KOG1278|consensus
Probab=25.79 E-value=2.7e+02 Score=25.12 Aligned_cols=21 Identities=14% Similarity=-0.132 Sum_probs=8.2
Q ss_pred ccchhHHHHHHHhhHHHHHHH
Q psy6058 76 DKKRTLATSLGACGTGIGTFV 96 (235)
Q Consensus 76 ~~~rg~~~~~~~~~~~~g~~l 96 (235)
|.+||..+......+.+.+.+
T Consensus 358 Ps~RGsLmT~~~~l~v~~G~~ 378 (628)
T KOG1278|consen 358 PSSRGSLMTAMVLLFVFMGFV 378 (628)
T ss_pred ccccccHHHHHHHHHHHHHHh
Confidence 444444444333333333333
No 324
>KOG3817|consensus
Probab=24.49 E-value=3.5e+02 Score=22.95 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=12.2
Q ss_pred HHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 53 GCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 53 ~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
+...|+..+.. ...-++..++||+
T Consensus 167 G~v~GilaSLl--~Viflv~rf~PKk 190 (452)
T KOG3817|consen 167 GIVIGILASLL--VVIFLVARFFPKK 190 (452)
T ss_pred ccHHHHHHHHH--HHHHHHHHhcccc
Confidence 44445544332 2233556778875
No 325
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=24.13 E-value=1.4e+02 Score=24.35 Aligned_cols=19 Identities=5% Similarity=0.156 Sum_probs=10.7
Q ss_pred hCcHHHHHHHHHHHHHHHH
Q psy6058 108 YGWRGTILLLAGTFLQMCI 126 (235)
Q Consensus 108 ~gw~~~~~~~~~~~~~~~~ 126 (235)
..|.+.|++..++++++.+
T Consensus 288 l~~~~gy~~~l~~m~~i~~ 306 (318)
T TIGR00383 288 LNWKYGYPAVLIVMAVIAL 306 (318)
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 4587777765554433333
No 326
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=24.11 E-value=2.4e+02 Score=19.18 Aligned_cols=20 Identities=10% Similarity=-0.110 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhch
Q psy6058 24 TILGGIISGTGFVLSATVANS 44 (235)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~ 44 (235)
++++.++-.++...+- .+++
T Consensus 7 L~~a~~~Ev~~~~~lK-~s~g 26 (110)
T PRK09541 7 LGGAILAEVIGTTLMK-FSEG 26 (110)
T ss_pred HHHHHHHHHHHHHHHH-HhcC
Confidence 3344455555555555 5543
No 327
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=23.95 E-value=1.3e+02 Score=19.46 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=16.2
Q ss_pred chhhhhHHHhhhhch-------hHHHHHHHHHHHHHHHHHH
Q psy6058 6 LLGPVASSFVDKYGC-------RWMTILGGIISGTGFVLSA 39 (235)
Q Consensus 6 i~~~~~g~l~dr~G~-------r~~~~~~~~~~~~~~~~~~ 39 (235)
.+++..+++..|..+ +..+..+.++...+.++++
T Consensus 33 a~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~a 73 (86)
T PF10785_consen 33 AASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLA 73 (86)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence 344455555555433 4444444444444444444
No 328
>KOG1479|consensus
Probab=23.91 E-value=2.4e+02 Score=24.26 Aligned_cols=51 Identities=12% Similarity=-0.075 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhHHHHHHHhhHHHHHHHHHHH
Q psy6058 50 ITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTLATSLGACGTGIGTFVYAPL 100 (235)
Q Consensus 50 i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~l~~~~ 100 (235)
+....+.|+..|-.......+..+-. |+++..+..+...+...|..+|..+
T Consensus 347 ~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 347 IFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred HHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45577788888766565556665544 4445555555555555555555444
No 329
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.88 E-value=2e+02 Score=18.12 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=15.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHH
Q psy6058 86 GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTF 121 (235)
Q Consensus 86 ~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~ 121 (235)
.+....+++ +.+.+.|++.+.+ +..+++.++..
T Consensus 13 ~~~il~~~~-iisfi~Gy~~q~~--~~~~~~~~~g~ 45 (76)
T PF06645_consen 13 MQYILIISA-IISFIVGYITQSF--SYTFYIYGAGV 45 (76)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 333333443 3345667776653 44555444433
No 330
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.46 E-value=3.1e+02 Score=21.48 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=9.3
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHh
Q psy6058 35 FVLSATVANSIEAQYITFGCIAGC 58 (235)
Q Consensus 35 ~~~~~~~~~~~~~l~i~~~~l~G~ 58 (235)
.++.+++..++| +++...++.|+
T Consensus 42 ~v~ig~l~~~~~-~~~i~gi~~g~ 64 (224)
T PF13829_consen 42 FVLIGLLFGSWW-YWLIIGILLGL 64 (224)
T ss_pred HHHHHHHHccHH-HHHHHHHHHHH
Confidence 334441334443 33443455444
No 331
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=22.91 E-value=6.4e+02 Score=23.67 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=8.7
Q ss_pred cchhhhhHHHhhhh
Q psy6058 5 LLLGPVASSFVDKY 18 (235)
Q Consensus 5 ~i~~~~~g~l~dr~ 18 (235)
.+++++.-.+.|+.
T Consensus 171 l~~p~~~q~viD~V 184 (709)
T COG2274 171 LATPLFSQIVIDKV 184 (709)
T ss_pred HHHHHHHHHHHHhh
Confidence 34556666777774
No 332
>KOG4112|consensus
Probab=22.80 E-value=2.4e+02 Score=18.68 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=18.8
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcH
Q psy6058 80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWR 111 (235)
Q Consensus 80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~ 111 (235)
+.+-=+++....+|+++| .+.|+..+.++|.
T Consensus 22 kkaEr~~q~ilti~aiVg-~i~Gf~~Qqls~t 52 (101)
T KOG4112|consen 22 KKAERFQQLILTIGAIVG-FIYGFAQQQLSVT 52 (101)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344445566666666655 5557777777774
No 333
>PRK10692 hypothetical protein; Provisional
Probab=22.76 E-value=2.3e+02 Score=18.46 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy6058 20 CRWMTILGGIISGTGFVLS 38 (235)
Q Consensus 20 ~r~~~~~~~~~~~~~~~~~ 38 (235)
||...++|.+++.++.+.+
T Consensus 3 Rk~a~~~GN~lMglGmv~M 21 (92)
T PRK10692 3 RKNASLLGNVLMGLGLVVM 21 (92)
T ss_pred chhhHHHhhHHHHHHHHHH
Confidence 3444444554444444433
No 334
>PRK09546 zntB zinc transporter; Reviewed
Probab=22.45 E-value=1.3e+02 Score=24.77 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=12.6
Q ss_pred hCcHHHHHHHHHHH-HHHHHHHhhcc
Q psy6058 108 YGWRGTILLLAGTF-LQMCICGALMK 132 (235)
Q Consensus 108 ~gw~~~~~~~~~~~-~~~~~~~~~~~ 132 (235)
..|++.|++..+++ +++++..++++
T Consensus 294 l~~~~gy~~~l~im~~i~~~~~~~fk 319 (324)
T PRK09546 294 GGWPFGFSIFCLLLVVLIGGVAWWLK 319 (324)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 35777777554433 33333344443
No 335
>PF07274 DUF1440: Protein of unknown function (DUF1440); InterPro: IPR009898 This family contains a number of bacterial proteins of unknown function approximately 180 residues long. These are possibly integral membrane proteins.
Probab=21.95 E-value=2.7e+02 Score=19.84 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=17.2
Q ss_pred HhhhhhhhHhHHHHHHhhccc-c--hhHHHH
Q psy6058 57 GCGLSLAYVTAVVSIAYWFDK-K--RTLATS 84 (235)
Q Consensus 57 G~~~g~~~~~~~~~~~~~~~~-~--rg~~~~ 84 (235)
-++.+..++..++++++.+|+ + +|...|
T Consensus 59 H~~FSi~fa~~Y~~~ae~~p~i~l~~G~~fG 89 (135)
T PF07274_consen 59 HFGFSIVFAVAYCVLAEYWPKIKLWQGAAFG 89 (135)
T ss_pred hHHHHHHHHHHHHHHHHHCCccchhhhHHHH
Confidence 344555666777788888777 3 444444
No 336
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=21.52 E-value=2.8e+02 Score=19.00 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhhhhhHhHHHHHHhhccc--ch---hHHHHHHHhhHHHHHHHHHH
Q psy6058 50 ITFGCIAGCGLSLAYVTAVVSIAYWFDK--KR---TLATSLGACGTGIGTFVYAP 99 (235)
Q Consensus 50 i~~~~l~G~~~g~~~~~~~~~~~~~~~~--~r---g~~~~~~~~~~~~g~~l~~~ 99 (235)
....++.|+..|+. ...-+-+-+.+|- +| .......-.+..+|-.+|+.
T Consensus 52 ~i~GL~~GiFvG~l-a~ALaEvlnv~PIlarRi~l~~~i~~li~aialGK~~GsL 105 (110)
T PF13782_consen 52 IIFGLFAGIFVGCL-AAALAEVLNVFPILARRIGLRRGIPYLIMAIALGKVIGSL 105 (110)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHh
Confidence 44466666666543 3333333344553 22 22233344444555555543
No 337
>PHA03237 envelope glycoprotein M; Provisional
Probab=21.44 E-value=5.5e+02 Score=22.35 Aligned_cols=19 Identities=11% Similarity=-0.209 Sum_probs=9.2
Q ss_pred cccchhHHHHHHHhhHHHH
Q psy6058 75 FDKKRTLATSLGACGTGIG 93 (235)
Q Consensus 75 ~~~~rg~~~~~~~~~~~~g 93 (235)
.+..-|...|.+.....+|
T Consensus 285 v~vl~G~~lG~lia~~~l~ 303 (424)
T PHA03237 285 VHVLPGPALGLLIAYGMLA 303 (424)
T ss_pred hhccccchHHHHHHHHHHH
Confidence 3344566665554443333
No 338
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=21.32 E-value=3.6e+02 Score=20.17 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=18.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhhCcHHHH
Q psy6058 86 GACGTGIGTFVYAPLTQYWIEEYGWRGTI 114 (235)
Q Consensus 86 ~~~~~~~g~~l~~~~~~~~~~~~gw~~~~ 114 (235)
......+|.+...++...+....||-+..
T Consensus 86 Lt~l~~~Gl~cl~LVL~~l~P~~g~~~~~ 114 (173)
T PF12046_consen 86 LTFLAAIGLACLGLVLSILFPDLGWWPLL 114 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccHHHH
Confidence 34445666666667777777777874443
No 339
>KOG3574|consensus
Probab=21.17 E-value=2.3e+02 Score=24.61 Aligned_cols=58 Identities=9% Similarity=-0.047 Sum_probs=40.4
Q ss_pred HHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058 53 GCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGW 110 (235)
Q Consensus 53 ~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw 110 (235)
-.+.+...-..+....+.-++..+.. -|+.+++.++...+|+-.=..++..+.+.++|
T Consensus 376 y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 376 YAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred HHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence 34444444455566666677776665 89999999999999987777777777665443
No 340
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=21.10 E-value=3.8e+02 Score=20.43 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhCcH-HHHHHHHHHHHHHHHHHhh
Q psy6058 95 FVYAPLTQYWIEEYGWR-GTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 95 ~l~~~~~~~~~~~~gw~-~~~~~~~~~~~~~~~~~~~ 130 (235)
.+....+..+.+.+|.. ..|.+.+.+.+....+-..
T Consensus 52 l~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml 88 (203)
T PF01914_consen 52 LIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEML 88 (203)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666666754 4666666655554444333
No 341
>KOG3097|consensus
Probab=21.02 E-value=5.2e+02 Score=21.95 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=27.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
.++...+++++.++.+.+.+.+....|-...+...++..+..+...++
T Consensus 312 igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~ 359 (390)
T KOG3097|consen 312 IGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFF 359 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHh
Confidence 345556666776777777777777666655555544444433333333
No 342
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=20.14 E-value=34 Score=27.89 Aligned_cols=127 Identities=6% Similarity=-0.077 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhccC
Q psy6058 54 CIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKD 133 (235)
Q Consensus 54 ~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~ 133 (235)
++.|++.+........+.+...|+.....+.=...+..+.+++--.......+...-...|+..+.+..+..+..++...
T Consensus 5 ~~~~~~~~~~q~s~~glas~~p~~y~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~~~~l~ 84 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASLFPPKYTQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIILYFILP 84 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhcCCHHHHHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHHHHHhc
Q ss_pred CchhHhhhhhcCCCCCCCccccccCcCccccccCCCCCchhhhHHHHHHHhhcCCCcc
Q psy6058 134 PEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEIRRVLMDGGNIE 191 (235)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (235)
.....++..+.+... +..+.+++.+.+.+..+.++.....++.+..+
T Consensus 85 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (309)
T PF01733_consen 85 RSPFYRYYLEREAKG-----------DERETEEELSSDGEEESESRSEGTFENSKPQE 131 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cChHHHHHHhhhccc-----------chhhhhhhhhhhcccccccccccccccccccc
Done!