Query psy6058
Match_columns 235
No_of_seqs 207 out of 2059
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 16:36:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6058.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6058hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.7 1.9E-18 6.5E-23 147.6 7.3 144 3-148 67-238 (491)
2 3o7q_A L-fucose-proton symport 99.7 2.1E-16 7.1E-21 132.9 14.9 126 3-130 73-228 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.7 1.2E-16 4E-21 134.8 11.2 123 3-127 74-202 (451)
4 4aps_A DI-OR tripeptide H+ sym 99.6 1.5E-15 5.1E-20 129.7 13.2 125 3-129 66-194 (491)
5 2gfp_A EMRD, multidrug resista 99.6 5.5E-16 1.9E-20 127.9 7.9 122 3-126 47-169 (375)
6 2xut_A Proton/peptide symporte 99.6 3.6E-14 1.2E-18 122.1 13.8 125 3-129 66-196 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.3 1.6E-11 5.3E-16 103.3 14.1 126 3-130 300-432 (451)
8 2cfq_A Lactose permease; trans 99.3 1.2E-11 4.2E-16 103.6 11.3 123 5-129 273-397 (417)
9 3o7q_A L-fucose-proton symport 99.2 2.2E-10 7.5E-15 96.0 13.1 121 3-127 307-428 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.1 2.8E-10 9.7E-15 96.9 7.5 124 4-130 332-470 (491)
11 4gc0_A D-xylose-proton symport 99.0 4.4E-09 1.5E-13 89.4 13.7 125 4-129 325-460 (491)
12 2cfq_A Lactose permease; trans 98.9 9.6E-11 3.3E-15 98.2 -1.4 119 3-123 55-179 (417)
13 2xut_A Proton/peptide symporte 98.7 5.5E-08 1.9E-12 83.4 8.4 106 22-129 374-500 (524)
14 2gfp_A EMRD, multidrug resista 98.4 5.2E-08 1.8E-12 80.0 2.3 111 4-118 248-363 (375)
15 2g9p_A Antimicrobial peptide l 67.9 3.1 0.00011 18.7 1.5 14 10-23 2-15 (26)
16 2iub_A CORA, divalent cation t 23.7 40 0.0014 27.1 2.3 29 108-136 333-362 (363)
17 4ev6_A Magnesium transport pro 23.6 28 0.00095 27.7 1.3 29 108-136 309-338 (339)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.74 E-value=1.9e-18 Score=147.59 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=116.5
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh------------------hchHHHHHHHHHHHHHhhhhhhh
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV------------------ANSIEAQYITFGCIAGCGLSLAY 64 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~i~~~~l~G~~~g~~~ 64 (235)
++++|++++|+++||+|||++++++.+++.++.++.+ + +++++.+ ++.|++.|++.|...
T Consensus 67 G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a-~~~~~~~~~~~~~~~~~~~a~~~~~l-~~~R~l~G~g~G~~~ 144 (491)
T 4gc0_A 67 GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSA-WPELGFTSINPDNTVPVYLAGYVPEF-VIYRIIGGIGVGLAS 144 (491)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-CTTTTTSCSSSSSSCCGGGGGCHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHhhhhhhhcchhHHHHHHhhhHHHH-HHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999998887 4 5678766 666999999999999
Q ss_pred HhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhh--------hCcHHHHHHHHHHHHHHHHH-HhhccCC
Q psy6058 65 VTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEE--------YGWRGTILLLAGTFLQMCIC-GALMKDP 134 (235)
Q Consensus 65 ~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~--------~gw~~~~~~~~~~~~~~~~~-~~~~~~~ 134 (235)
+..+.+++|+.|++ |++..++.+.+..+|..+++.+...+... .+||..+.+..+..++..+. .+.+|+|
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp 224 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESP 224 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCH
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCCh
Confidence 99999999998775 99999999999999999888887766543 34676666655554444444 4456888
Q ss_pred chhHhhhhhcCCCC
Q psy6058 135 EWWIREQKRLQNPT 148 (235)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (235)
+++..+++.+++.+
T Consensus 225 ~~L~~~~~~~~a~~ 238 (491)
T 4gc0_A 225 RWLMSRGKQEQAEG 238 (491)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHcCchhHHHH
Confidence 88887776665544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.71 E-value=2.1e-16 Score=132.86 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=109.3
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK- 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~- 78 (235)
.+.++++++|+++||+|||++++++.++.+++.++. . .+++++.+ ++.|++.|++.+...+....++++++|++
T Consensus 73 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~ 150 (438)
T 3o7q_A 73 GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTLF-LVGLFIIAAGLGCLETAANPFVTVLGPESS 150 (438)
T ss_dssp HHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred HHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc-ccccHHHH-HHHHHHHHhhHHHhhhhHHHHHHHHcCchh
Confidence 457899999999999999999999999999999988 7 78899866 56699999999999999999999998765
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHH-hhhC-------------------------cHHHHHHHHHHHHHHHHHHhh
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWI-EEYG-------------------------WRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~-~~~g-------------------------w~~~~~~~~~~~~~~~~~~~~ 130 (235)
|+++.++.+.+..+|..++|.+++.+. +..+ ||+.|++.+++.++..++.++
T Consensus 151 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988 5544 999998777665555554443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.69 E-value=1.2e-16 Score=134.80 Aligned_cols=123 Identities=13% Similarity=0.183 Sum_probs=110.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK- 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~- 77 (235)
++.++++++|+++||+|||++++++.++.+++.++.+ + +++++.+ ++.|++.|++.+...+....++.+++|+
T Consensus 74 ~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~i~~~~~~~ 151 (451)
T 1pw4_A 74 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVM-FVLLFLCGWFQGMGWPPCGRTMVHWWSQK 151 (451)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCHHHHSSSSHH-HHHHHHHHHHHHHTHHHHHHHHHTTCTTT
T ss_pred HHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhccccHHHH-HHHHHHHHHHhhhccchHHHHHHHHCCch
Confidence 4568899999999999999999999999999999999 8 8888866 5569999999999999999999999976
Q ss_pred chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHH
Q psy6058 78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~ 127 (235)
+|+++.++...+..+|..++|.+++++.+..| ||+.|++.+++.++..++
T Consensus 152 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~ 202 (451)
T 1pw4_A 152 ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 202 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999989898 999999888766555444
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.65 E-value=1.5e-15 Score=129.70 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=109.2
Q ss_pred cccchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-c--
Q psy6058 3 VPLLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-K-- 78 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~-- 78 (235)
++.++++++|+++|| +|||++++++.++..++.++.+ ++++++.+ ++.|++.|++.+...+....++++++|+ +
T Consensus 66 ~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 143 (491)
T 4aps_A 66 MVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-LPFGASAL-FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR 143 (491)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-SCCSTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHHHHHhccchHHHHHHHHcCccccc
Confidence 457889999999999 8999999999999999999999 89998866 5569999999999999999999999865 4
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
|+.+.++++.+..+|..++|.+++.+.+..||++.|++.++..++..+..+
T Consensus 144 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 144 RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999999999987766555544433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.62 E-value=5.5e-16 Score=127.94 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=109.4
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL 81 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~ 81 (235)
.+.+++++.|+++||+|||++++++.++..++.++.. ++++++.+ +..|++.|++.+...+....++.+++|+ +|++
T Consensus 47 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (375)
T 2gfp_A 47 TYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TTSSLTVL-IAASAMQGMGTGVGGVMARTLPRDLYERTQLRH 124 (375)
T ss_dssp HHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHH
Confidence 4568899999999999999999999999999999999 88888866 5569999999999999999999999875 5999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHH
Q psy6058 82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCI 126 (235)
Q Consensus 82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~ 126 (235)
+.++...+..+|..++|.+++.+.+..|||+.|++.+++.++..+
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 125 ANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999989999999987776655544
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.56 E-value=3.6e-14 Score=122.12 Aligned_cols=125 Identities=12% Similarity=0.058 Sum_probs=107.9
Q ss_pred cccchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058 3 VPLLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R 79 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r 79 (235)
.+.++++++|+++||+ |||+++.++.++..++.++.. +++ +++.+ ++.|++.|++.+...+....++.+++|++ |
T Consensus 66 ~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 143 (524)
T 2xut_A 66 GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA-IFEHSVQGF-YTGLFLIALGSGGIKPLVSSFMGDQFDQSNK 143 (524)
T ss_dssp HHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH-HTSSCHHHH-HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HhcccHHHH-HHHHHHHHHhccccchhHHHHHHHHcCccch
Confidence 4567899999999999 999999999999999999998 888 88866 55699999999999999999999998775 8
Q ss_pred hHHHHH---HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 80 TLATSL---GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 80 g~~~~~---~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
+++.+. +..+..+|..++|.+++.+.+..||++.|++.+++.++..+..+
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 776666 88999999999999999999989999999987776655544443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.35 E-value=1.6e-11 Score=103.33 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=102.0
Q ss_pred cccchhhhhHHHhhhh--chhHHHHHHHHHHH-HHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058 3 VPLLLGPVASSFVDKY--GCRWMTILGGIISG-TGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK 77 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~--G~r~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~ 77 (235)
+..++.++.|++.||+ |+|+.+.++.++.. ++.++.. +.+ +.+.+ +...++.|++.+...+....++.+.+|+
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-MNPAGNPTVD-MICMIVIGFLIYGPVMLIGLHALELAPK 377 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT-SCCTTCHHHH-HHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HhcccCHHHH-HHHHHHHHHHHhchHHHHHHHHHHHhch
Confidence 3467889999999999 99999888887766 6666666 553 45534 4446777888888888888899999887
Q ss_pred c-hhHHHHHHHhhHHH-HHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 78 K-RTLATSLGACGTGI-GTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 78 ~-rg~~~~~~~~~~~~-g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
+ |+++.|+.+....+ |..++|.+.+.+.+..||+..|++.+++.++..++.++
T Consensus 378 ~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 378 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 6 99999999999999 99999999999999999999999888776666555443
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=1.2e-11 Score=103.65 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=98.5
Q ss_pred cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHH
Q psy6058 5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLAT 83 (235)
Q Consensus 5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~ 83 (235)
.++.++.|+++||+|||+++..+.++..++.++.. +.++.+.+ ++..++.+++.+...+....++.+.+|++ |+++.
T Consensus 273 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~ 350 (417)
T 2cfq_A 273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEV-VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY 350 (417)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHH-HHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 46788999999999999999988888888777776 66676645 44456667776666666778889998876 99999
Q ss_pred HH-HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 84 SL-GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 84 ~~-~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
++ ++....+|+.++|.+.+.+.+..|++..|.+.+++.++..+..+
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 98 58888999999999999999988888888887776666555543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.20 E-value=2.2e-10 Score=95.98 Aligned_cols=121 Identities=15% Similarity=0.080 Sum_probs=98.0
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA 82 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~ 82 (235)
+..++.++.|+++||+|||+.+.++.++..++.++.. +.++.+.+ +. .++.|++.+..++....+..+.+|++++.+
T Consensus 307 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (438)
T 3o7q_A 307 CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-FAGGHVGL-IA-LTLCSAFMSIQYPTIFSLGIKNLGQDTKYG 383 (438)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCCHHHHH-HH-HHHHHHHHTTHHHHHHHHHHSSCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HcCCcHHH-HH-HHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 3467889999999999999999999999988888887 77776543 33 477788888888888888888888778888
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHH
Q psy6058 83 TSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCIC 127 (235)
Q Consensus 83 ~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~ 127 (235)
.++.. ...+|..++|.+.+.+.+..| ++..|++.+++.++..++
T Consensus 384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 88776 556999999999999999999 998888765554444333
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.05 E-value=2.8e-10 Score=96.91 Aligned_cols=124 Identities=13% Similarity=0.058 Sum_probs=92.0
Q ss_pred ccchhhhhHHHhhhhchhHHHH-----HHHHHHHHHHHHHHHhhc---------hHHHHHHHHHHHHHhhhhhhhHhHHH
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTI-----LGGIISGTGFVLSATVAN---------SIEAQYITFGCIAGCGLSLAYVTAVV 69 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~-----~~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~l~G~~~g~~~~~~~~ 69 (235)
..++.++.+++.||+|||+... ++.++..++.++.. ... +.+.+ +...++.|++.+...+....
T Consensus 332 ~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~ 409 (491)
T 4aps_A 332 IMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA-IPGALYGTSGKVSPLWL-VGSWALVILGEMLISPVGLS 409 (491)
T ss_dssp HHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH-HHHHHCCCCTTCCTHHH-HHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCccHHHH-HHHHHHHHHHHHHHhHHHHH
Confidence 4567888999999999986544 77777777776665 432 44434 44467789998888888899
Q ss_pred HHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058 70 SIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL 130 (235)
Q Consensus 70 ~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 130 (235)
++.+.+|++ |+++.|+.+....+|..+++.+.+.+.+. ++.+.|.+.+++.++..++.++
T Consensus 410 ~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 410 VTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 999988876 99999999999999999999998777654 6666777766665555555444
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.02 E-value=4.4e-09 Score=89.43 Aligned_cols=125 Identities=11% Similarity=0.029 Sum_probs=84.6
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhh-hhHhHHHHHHhhcccc-
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSL-AYVTAVVSIAYWFDKK- 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~-~~~~~~~~~~~~~~~~- 78 (235)
..++.++++++.||+|||+.++.+.....++.+..+ .. .......+...++...+.+. ..+....+.+|.+|.+
T Consensus 325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~ 403 (491)
T 4gc0_A 325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG-TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 403 (491)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT
T ss_pred HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH
Confidence 456788999999999999999999888887776654 32 11111112212222222222 2345567889999987
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHh------hhCcHHHHHHHHHHHHHHHHHHh
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIE------EYGWRGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~------~~gw~~~~~~~~~~~~~~~~~~~ 129 (235)
|+++.|+......+|+++++.+.+.+.+ ..++.+.|++.++++++..++.+
T Consensus 404 R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 404 RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877666533 34566677777776666555543
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.89 E-value=9.6e-11 Score=98.20 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=76.8
Q ss_pred cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc---
Q psy6058 3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD--- 76 (235)
Q Consensus 3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~--- 76 (235)
++.++++++|+++||+|||++++++.++..++.... . +........+..+++.|++.+..++.....+..+.+
T Consensus 55 ~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 133 (417)
T 2cfq_A 55 FSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI-FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133 (417)
T ss_dssp HHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT-HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 457889999999999999999998887765432111 1 221111001222444455454444444444444443
Q ss_pred cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHH
Q psy6058 77 KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQ 123 (235)
Q Consensus 77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~ 123 (235)
++++...+....+..+|..++|.+++++.+ .+|++.|++.++..++
T Consensus 134 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 134 RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALI 179 (417)
T ss_dssp HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTT
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence 346667788888889999999999998886 5899998876555433
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.66 E-value=5.5e-08 Score=83.42 Aligned_cols=106 Identities=16% Similarity=-0.002 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHHHHHhhHH
Q psy6058 22 WMTILGGIISGTGFVLSATVA---------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATSLGACGTG 91 (235)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~ 91 (235)
+.+.++.++.+++.++.. +. .+.+.+ +...++.|++.+...+....++.+..|++ ||+++|+.++...
T Consensus 374 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 451 (524)
T 2xut_A 374 RKMGAGIAITGLSWIVVG-TIQLMMDGGSALSIFWQ-ILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT 451 (524)
T ss_dssp HHHHTHHHHHHHHHHTTT-TTTTTTTTTCCCCSHHH-HHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH
Confidence 456677777777777666 53 245544 44577889999988888888999988775 9999999999999
Q ss_pred HHHHHHHHHHHHHHhhh--Cc---------HHHHHHHHHHHHHHHHHHh
Q psy6058 92 IGTFVYAPLTQYWIEEY--GW---------RGTILLLAGTFLQMCICGA 129 (235)
Q Consensus 92 ~g~~l~~~~~~~~~~~~--gw---------~~~~~~~~~~~~~~~~~~~ 129 (235)
+|..++|.+.+.+.+.. +| +..|++.+++.++..++.+
T Consensus 452 ~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (524)
T 2xut_A 452 VGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFA 500 (524)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999887632 23 2335555555554444433
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.45 E-value=5.2e-08 Score=79.96 Aligned_cols=111 Identities=13% Similarity=-0.008 Sum_probs=79.9
Q ss_pred ccchhhhhHHHhhhhchhHHHHHHHHH-HHHHHH--HHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058 4 PLLLGPVASSFVDKYGCRWMTILGGII-SGTGFV--LSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK 78 (235)
Q Consensus 4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~-~~~~~~--~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~ 78 (235)
..++.++.+++.||+|++ +..+... ...+.. ... . .++.+.+ +...++.|++.+...+....++.+.+|++
T Consensus 248 ~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 323 (375)
T 2gfp_A 248 AFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPD-WFGVMNVWTL-LVPAALFFFGAGMLFPLATSGAMEPFPFL 323 (375)
T ss_dssp HHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHH-HHHHHHHHHH-HHHHHHHHHHHHHTSSTTHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh-hhccccHHHH-HHHHHHHHHHHHHhhHHHHHHHHHhCCcc
Confidence 456778888888888873 2333332 222222 222 1 1244433 44467789999988899999999988867
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHH
Q psy6058 79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLA 118 (235)
Q Consensus 79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~ 118 (235)
|+++.++.+....+|..++|.+.+.+.+..+++..+++.+
T Consensus 324 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 324 AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999999999988878877776543
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=67.93 E-value=3.1 Score=18.69 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=11.7
Q ss_pred hhHHHhhhhchhHH
Q psy6058 10 VASSFVDKYGCRWM 23 (235)
Q Consensus 10 ~~g~l~dr~G~r~~ 23 (235)
++|.+..+|||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 47899999999865
No 16
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.74 E-value=40 Score=27.08 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=10.1
Q ss_pred hCcHHHHHHHHHHH-HHHHHHHhhccCCch
Q psy6058 108 YGWRGTILLLAGTF-LQMCICGALMKDPEW 136 (235)
Q Consensus 108 ~gw~~~~~~~~~~~-~~~~~~~~~~~~~~~ 136 (235)
..|++.|++..+++ +++++..++++..+|
T Consensus 333 l~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 333 LRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp ------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45777776544433 333334444444444
No 17
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.63 E-value=28 Score=27.71 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=14.1
Q ss_pred hCcHHHHHHHHHHH-HHHHHHHhhccCCch
Q psy6058 108 YGWRGTILLLAGTF-LQMCICGALMKDPEW 136 (235)
Q Consensus 108 ~gw~~~~~~~~~~~-~~~~~~~~~~~~~~~ 136 (235)
..|++.|++..+++ +++++..++++..+|
T Consensus 309 l~~~~gy~~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 309 ANNPQGFWLVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp SSCTTHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35777776554433 333333444444443
Done!