RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6058
         (235 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 17/136 (12%), Positives = 39/136 (28%), Gaps = 3/136 (2%)

Query: 5   LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS--ATVANSIEAQYITFGCIAGCGLSL 62
                +  S  D+   R     G I++    +       A S  A       + G    +
Sbjct: 73  GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 132

Query: 63  AYVTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTF 121
            +     ++ +W+ + +R    S+  C   +G  +   L    +  +      L +    
Sbjct: 133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192

Query: 122 LQMCICGALMKDPEWW 137
             +    A     +  
Sbjct: 193 AILVALFAFAMMRDTP 208


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 7/137 (5%)

Query: 10  VASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVV 69
            A   +++ G +   +L G I     + S+   +++  + +    +    +    V    
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL--EVVILKTLHMFEVPFLLVGCFK 335

Query: 70  SIAYWFDKKR--TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127
            I   F+ +   T+          +     + L     E  G++G  L+L    L   + 
Sbjct: 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

Query: 128 GALM---KDPEWWIREQ 141
                    P   +R Q
Sbjct: 396 SVFTLSGPGPLSLLRRQ 412


>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation
           factor 3 subunit 12, eIF3k, C-terminal domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 27.0 bits (60), Expect = 0.71
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 8/48 (16%)

Query: 64  YVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWR 111
           ++  VV I Y    +  LA  LG         +     + W+ +YGW 
Sbjct: 10  FICHVVGITYQHIDRWLLAEMLG--------DLSDSQLKVWMSKYGWS 49


>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
           cereus [TaxId: 1396]}
          Length = 281

 Score = 28.3 bits (62), Expect = 0.76
 Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 11/104 (10%)

Query: 87  ACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEWWIREQKRLQN 146
            CG G    V  PL     +  G      LLA       +     +  E    E +    
Sbjct: 35  GCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDK 94

Query: 147 PTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEIRRVLMDGGNI 190
              +   A   +  +               ++++   +  GG I
Sbjct: 95  YDIAICHAFLLHMTTPETM-----------LQKMIHSVKKGGKI 127


>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 293

 Score = 25.9 bits (56), Expect = 4.0
 Identities = 10/71 (14%), Positives = 17/71 (23%), Gaps = 5/71 (7%)

Query: 88  CGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM-----CICGALMKDPEWWIREQK 142
                GT  Y  +  +   E   R  +  L   F+          G      +       
Sbjct: 170 KKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIG 229

Query: 143 RLQNPTPSHSI 153
             +  TP   +
Sbjct: 230 EKKQSTPLREL 240


>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
           flexneri [TaxId: 623]}
          Length = 250

 Score = 25.8 bits (56), Expect = 5.3
 Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 4/40 (10%)

Query: 120 TFLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNR 159
               +     ++K P         L N    +++ TK +R
Sbjct: 206 PARLLATKRVVVKRP----DYAPPLANVATPNAVVTKGHR 241


>d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus
           niger [TaxId: 5061]}
          Length = 394

 Score = 25.4 bits (54), Expect = 6.2
 Identities = 4/12 (33%), Positives = 8/12 (66%)

Query: 100 LTQYWIEEYGWR 111
           + + W+ E+ WR
Sbjct: 62  MREKWLSEFDWR 73


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 905,895
Number of extensions: 40624
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 11
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)