Query psy606
Match_columns 210
No_of_seqs 194 out of 242
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 16:38:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00243 GAS2 Growth-Arrest- 100.0 1.7E-38 3.7E-43 231.6 8.1 73 136-208 1-73 (73)
2 PF02187 GAS2: Growth-Arrest-S 100.0 1.8E-37 4E-42 227.3 5.5 72 136-207 1-72 (73)
3 KOG0516|consensus 97.4 1.4E-05 3E-10 82.6 -3.7 139 70-208 272-414 (1047)
4 COG3900 Predicted periplasmic 45.6 11 0.00024 33.9 1.2 21 62-82 126-146 (262)
5 smart00243 GAS2 Growth-Arrest- 39.5 19 0.00041 26.8 1.5 19 62-80 2-20 (73)
6 PTZ00423 glideosome-associated 38.1 14 0.00031 31.3 0.8 23 55-77 146-168 (193)
7 PRK10579 hypothetical protein; 29.6 58 0.0013 25.3 2.8 35 160-195 30-66 (94)
8 PF13241 NAD_binding_7: Putati 28.4 36 0.00077 25.5 1.5 19 174-193 1-19 (103)
9 PF05862 IceA2: Helicobacter p 28.3 92 0.002 22.2 3.4 35 157-193 4-39 (59)
10 PF02996 Prefoldin: Prefoldin 27.7 84 0.0018 23.8 3.5 17 176-192 53-70 (120)
11 PF14776 UNC-79: Cation-channe 27.1 19 0.0004 35.7 -0.3 14 184-197 462-475 (525)
12 PRK09681 putative type II secr 24.8 65 0.0014 29.4 2.7 36 162-197 105-143 (276)
13 PF07934 OGG_N: 8-oxoguanine D 24.6 1.7E+02 0.0037 22.3 4.7 41 149-189 15-55 (117)
14 PF08830 DUF1806: Protein of u 24.5 53 0.0012 26.4 1.9 8 185-192 68-75 (114)
15 TIGR03231 anthran_1_2_B anthra 23.3 1.1E+02 0.0023 25.1 3.5 11 182-192 123-133 (155)
16 PF15017 AF1Q: Drug resistance 23.0 33 0.00072 26.3 0.4 9 188-196 72-80 (87)
17 PRK15231 fimbrial adhesin prot 22.7 92 0.002 26.2 3.0 40 148-193 59-107 (150)
18 cd00584 Prefoldin_alpha Prefol 22.0 1.1E+02 0.0024 23.7 3.2 12 181-192 69-80 (129)
19 PF10057 DUF2294: Uncharacteri 21.4 1.3E+02 0.0028 23.4 3.5 35 167-201 24-58 (118)
20 PF14534 DUF4440: Domain of un 20.1 1.4E+02 0.0029 20.7 3.1 17 176-192 90-106 (107)
No 1
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=100.00 E-value=1.7e-38 Score=231.62 Aligned_cols=73 Identities=58% Similarity=1.140 Sum_probs=70.6
Q ss_pred chhhHHHHHHhhccCCCCCcCeeeecCCceeecCCceEEEEEeeCCeeEEEecCCcccHHHhHhhcCCCcccc
Q psy606 136 KSLDEMVRDLVARCTCPTQFPMIRVSEGKYRIGDTKVLIFVRVLRSHVMVRVGGGWDTLSHYLDKHDPCRCKT 208 (210)
Q Consensus 136 ~~LD~~V~~i~~~c~c~~~~~v~r~~~GkYr~G~~~~~~~vRil~~~vMVRVGGGW~tL~eyL~khdPcr~~~ 208 (210)
++||++|+++++.|+|+++|+|+|+++|||+||++++++|+|++++||||||||||+||+|||.||||||++|
T Consensus 1 ~~id~~v~~~~~~C~C~~~f~i~ri~eGkYr~Gd~~~~~~vRil~~~VMVRVGGGW~tL~~fL~khDPCr~~~ 73 (73)
T smart00243 1 DKIDDEVKRIVEDCKCPTKFQVEKISEGKYRFGDSQILRLVRILRSTVMVRVGGGWETLDEYLLKHDPCRAKG 73 (73)
T ss_pred CcHHHHHHHHHhcCCCCCCcceEEecCCceEEcCCceEEEEEEeCCeEEEEECCcHHHHHHHHHhCCCcccCC
Confidence 4689999999999999999999999999999999989999999999999999999999999999999999985
No 2
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=100.00 E-value=1.8e-37 Score=227.32 Aligned_cols=72 Identities=72% Similarity=1.380 Sum_probs=62.6
Q ss_pred chhhHHHHHHhhccCCCCCcCeeeecCCceeecCCceEEEEEeeCCeeEEEecCCcccHHHhHhhcCCCccc
Q psy606 136 KSLDEMVRDLVARCTCPTQFPMIRVSEGKYRIGDTKVLIFVRVLRSHVMVRVGGGWDTLSHYLDKHDPCRCK 207 (210)
Q Consensus 136 ~~LD~~V~~i~~~c~c~~~~~v~r~~~GkYr~G~~~~~~~vRil~~~vMVRVGGGW~tL~eyL~khdPcr~~ 207 (210)
++||++|+++++.|+|+++|+|+|+++||||||++++++|+||+++||||||||||+||+|||.||||||++
T Consensus 1 ~~ld~~V~~iv~~C~C~~~f~v~rv~~GkYr~g~~~~l~~~ril~~~vMVRVGGGW~tL~~~L~khDPcR~~ 72 (73)
T PF02187_consen 1 NKLDDEVRRIVNQCSCPNKFPVERVSEGKYRFGDSKKLFFVRILRSHVMVRVGGGWDTLEEYLDKHDPCRCK 72 (73)
T ss_dssp -HHHHHHHHHHTS--SSS---EEEEETTEEE-ETTEEEEEEEETTTEEEEEETTEEEEHHHHHHHH-HHHHT
T ss_pred CcHHHHHHHHHhcCCCCCceeEEEeCCCceEeCCCceEEEEEEeCCEEEEEeCCcHHHHHHHhhccCCcccc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0516|consensus
Probab=97.35 E-value=1.4e-05 Score=82.55 Aligned_cols=139 Identities=26% Similarity=0.326 Sum_probs=94.4
Q ss_pred hccccCCCCCchhhhHHHHHHHHHhhhhcCCCCCCcc-ccccccCCCCCCC--ccccCCCCCCcccCCcchhhHHHHHHh
Q psy606 70 RGAKLGMPAPMLIQLEREIDREIAADKKKLGFSDNEY-YDADLEDDLSDSD--DEAQYGPLPQIVTNDLKSLDEMVRDLV 146 (210)
Q Consensus 70 ~~~~~g~~~P~lVqLEkEIe~E~r~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~P~P~~~~~d~~~LD~~V~~i~ 146 (210)
+.+..+.-.++..|.+..++.++..+.+.......-. +.+.....+.... ..+.....+.+..+..+.+|.......
T Consensus 272 ~~~~~~~~~~~~~q~~~~l~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~sl~~~~~~k~~~~~~~~~~~~~~l~~e~~~ 351 (1047)
T KOG0516|consen 272 RISREAYLAALLAQWSIELELEICAERHLKHNAAYFEFFEDVRSAEDELASLRDALDEKYSPDRSSSLLRLLDLLPEEEK 351 (1047)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHhhhhhHHHHHHhhhhhhhccCCccccchhhhhhchHHHH
Confidence 4455666689999999999999877654321100000 0000000000000 011112223333444566777777788
Q ss_pred hccCCCCCcCeeeecCCceeecC-CceEEEEEeeCCeeEEEecCCcccHHHhHhhcCCCcccc
Q psy606 147 ARCTCPTQFPMIRVSEGKYRIGD-TKVLIFVRVLRSHVMVRVGGGWDTLSHYLDKHDPCRCKT 208 (210)
Q Consensus 147 ~~c~c~~~~~v~r~~~GkYr~G~-~~~~~~vRil~~~vMVRVGGGW~tL~eyL~khdPcr~~~ 208 (210)
..|.|+.+|...+...|+|+.+. .....+.+..++++|||+++||++++.++.++++|+...
T Consensus 352 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~~~~~ 414 (1047)
T KOG0516|consen 352 EKCVLPNQFEEVRGLQGKERVGVQLPLREPDEPLRSPISVRLGCDYEQLEKYLEKGDECRLKL 414 (1047)
T ss_pred HHHhhhhHHHHHHHHHhhhhcccccCCcccccCccCCCCcccccchhhHHHHHHhchhhhhhc
Confidence 89999999999999999999998 456778889999999999999999999999999998764
No 4
>COG3900 Predicted periplasmic protein [Function unknown]
Probab=45.59 E-value=11 Score=33.90 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.2
Q ss_pred chhHHHhhhccccCCCCCchh
Q psy606 62 SLDEMVARRGAKLGMPAPMLI 82 (210)
Q Consensus 62 nLde~V~~~~~~~g~~~P~lV 82 (210)
++||+|.+|..+||++.|+-=
T Consensus 126 TiD~lvdei~~kyG~~lp~ad 146 (262)
T COG3900 126 TIDELVDEIDDKYGITLPGAD 146 (262)
T ss_pred cHHHHHHHHHhhcCCCccchh
Confidence 799999999999999999843
No 5
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=39.50 E-value=19 Score=26.82 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.8
Q ss_pred chhHHHhhhccccCCCCCc
Q psy606 62 SLDEMVARRGAKLGMPAPM 80 (210)
Q Consensus 62 nLde~V~~~~~~~g~~~P~ 80 (210)
+||+.|++++++|+|+.|-
T Consensus 2 ~id~~v~~~~~~C~C~~~f 20 (73)
T smart00243 2 KIDDEVKRIVEDCKCPTKF 20 (73)
T ss_pred cHHHHHHHHHhcCCCCCCc
Confidence 6899999999999999654
No 6
>PTZ00423 glideosome-associated protein 45; Provisional
Probab=38.08 E-value=14 Score=31.35 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.5
Q ss_pred cccccccchhHHHhhhccccCCC
Q psy606 55 IVTNDLKSLDEMVARRGAKLGMP 77 (210)
Q Consensus 55 ~~~~dlrnLde~V~~~~~~~g~~ 77 (210)
.++||+..+||.-.-++.||||.
T Consensus 146 ~TPcDM~k~DEtAk~~s~RCGcd 168 (193)
T PTZ00423 146 VTPCDMNKLDETAKVFSRRCGCD 168 (193)
T ss_pred cCccchhhHHHHHHHHHHhhCCC
Confidence 47899999999999999999997
No 7
>PRK10579 hypothetical protein; Provisional
Probab=29.62 E-value=58 Score=25.28 Aligned_cols=35 Identities=20% Similarity=0.443 Sum_probs=27.5
Q ss_pred ecCCceeecCCceEEEEEeeCCeeEEEecC--CcccHH
Q psy606 160 VSEGKYRIGDTKVLIFVRVLRSHVMVRVGG--GWDTLS 195 (210)
Q Consensus 160 ~~~GkYr~G~~~~~~~vRil~~~vMVRVGG--GW~tL~ 195 (210)
+.+|-|.||....= .+-|+.+.+-|+..| .|.++.
T Consensus 30 m~pGey~F~T~~~E-~MeivsG~l~V~Lpg~~ew~~~~ 66 (94)
T PRK10579 30 MAEGEYTFSTAEPE-EMTVISGALNVLLPGATDWQVYE 66 (94)
T ss_pred EeeeEEEEcCCCcE-EEEEEeeEEEEECCCCcccEEeC
Confidence 56788999986543 457899999999998 698764
No 8
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=28.39 E-value=36 Score=25.54 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=11.5
Q ss_pred EEEEeeCCeeEEEecCCccc
Q psy606 174 IFVRVLRSHVMVRVGGGWDT 193 (210)
Q Consensus 174 ~~vRil~~~vMVRVGGGW~t 193 (210)
+|+.+.+.+|+| ||||=..
T Consensus 1 l~l~l~~~~vlV-vGgG~va 19 (103)
T PF13241_consen 1 LFLDLKGKRVLV-VGGGPVA 19 (103)
T ss_dssp EEE--TT-EEEE-EEESHHH
T ss_pred CEEEcCCCEEEE-ECCCHHH
Confidence 466777778888 9998443
No 9
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=28.26 E-value=92 Score=22.23 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=24.3
Q ss_pred eeeecCCceeecCCceEEEEEeeCC-eeEEEecCCccc
Q psy606 157 MIRVSEGKYRIGDTKVLIFVRVLRS-HVMVRVGGGWDT 193 (210)
Q Consensus 157 v~r~~~GkYr~G~~~~~~~vRil~~-~vMVRVGGGW~t 193 (210)
|.++..||..--+. -.+=|+.++ .|=|.|+|||..
T Consensus 4 vvKvvnGki~eyen--G~~kRTYGsN~v~v~~~g~~VA 39 (59)
T PF05862_consen 4 VVKVVNGKIEEYEN--GSYKRTYGSNAVAVQVDGGIVA 39 (59)
T ss_pred EEEEeccEEEEeeC--CceEeecCCceEEEeeCCCEEE
Confidence 56788888765443 224466675 588999999964
No 10
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=27.70 E-value=84 Score=23.75 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=12.1
Q ss_pred EEeeC-CeeEEEecCCcc
Q psy606 176 VRVLR-SHVMVRVGGGWD 192 (210)
Q Consensus 176 vRil~-~~vMVRVGGGW~ 192 (210)
.++.. ++|+|-+|.||-
T Consensus 53 g~i~~~~~vlV~lG~~~~ 70 (120)
T PF02996_consen 53 GKIPDTDKVLVSLGAGYY 70 (120)
T ss_dssp EE-SSTTEEEEEEETTEE
T ss_pred EEeCCCCEEEEEeeCCeE
Confidence 34544 689999999973
No 11
>PF14776 UNC-79: Cation-channel complex subunit UNC-79
Probab=27.09 E-value=19 Score=35.73 Aligned_cols=14 Identities=57% Similarity=1.030 Sum_probs=11.0
Q ss_pred EEEecCCcccHHHh
Q psy606 184 MVRVGGGWDTLSHY 197 (210)
Q Consensus 184 MVRVGGGW~tL~ey 197 (210)
-+||||.|++|..=
T Consensus 462 yarvg~~wd~l~~~ 475 (525)
T PF14776_consen 462 YARVGGHWDTLCSR 475 (525)
T ss_pred hhhhcccccccCCH
Confidence 38999999986543
No 12
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=24.75 E-value=65 Score=29.40 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=27.8
Q ss_pred CCceeecCCc---eEEEEEeeCCeeEEEecCCcccHHHh
Q psy606 162 EGKYRIGDTK---VLIFVRVLRSHVMVRVGGGWDTLSHY 197 (210)
Q Consensus 162 ~GkYr~G~~~---~~~~vRil~~~vMVRVGGGW~tL~ey 197 (210)
...|++|++. ......|..+||+++.+|-.+||.=+
T Consensus 105 Q~tY~iGd~i~g~~a~L~~V~~DrVIl~~~Gr~EtL~L~ 143 (276)
T PRK09681 105 QQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLA 143 (276)
T ss_pred EeEEeCCcccCCCCeEEEEEcCCEEEEecCCEEEEEEec
Confidence 3459999863 34566788899999999999998543
No 13
>PF07934 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal domain; InterPro: IPR012904 The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations. This enzyme is found in archaeal, bacterial and eukaryotic species, and is specifically responsible for the process which leads to the removal of 8-oxoguanine residues. It has DNA glycosylase activity (3.2.2.23 from EC) and DNA lyase activity (4.2.99.18 from EC) []. The region featured in this family is the N-terminal domain, which is organised into a single copy of a TBP-like fold. The domain contributes residues to the 8-oxoguanine binding pocket []. ; GO: 0003684 damaged DNA binding, 0008534 oxidized purine base lesion DNA N-glycosylase activity, 0006289 nucleotide-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 1N39_A 1LWV_A 1YQM_A 2NOL_A 1YQL_A 1LWY_A ....
Probab=24.61 E-value=1.7e+02 Score=22.27 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=29.5
Q ss_pred cCCCCCcCeeeecCCceeecCCceEEEEEeeCCeeEEEecC
Q psy606 149 CTCPTQFPMIRVSEGKYRIGDTKVLIFVRVLRSHVMVRVGG 189 (210)
Q Consensus 149 c~c~~~~~v~r~~~GkYr~G~~~~~~~vRil~~~vMVRVGG 189 (210)
..|...|.-.+...+.|..--.++++.+|-..+++.+++-+
T Consensus 15 L~sGQ~FrW~~~~~~~~~gv~~~~~~~l~q~~~~~~~~~~~ 55 (117)
T PF07934_consen 15 LFSGQSFRWRKIDDGEWSGVIGDRVVQLRQDDDNLLYRCLS 55 (117)
T ss_dssp CCTTS-SSEEEECTTEEEEEETTEEEEEEEETTEEEEECE-
T ss_pred hcccCcccCEEeCCCeEEEEcCCeEEEEEECCCEEEEEEec
Confidence 36678899999988855522224688899889999999876
No 14
>PF08830 DUF1806: Protein of unknown function (DUF1806); InterPro: IPR014934 This entry consists of bacterial uncharacterised proteins. The structure of one of the proteins has been solved and it adopts a beta barrel-like structure. ; PDB: 1NJH_A.
Probab=24.53 E-value=53 Score=26.38 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=5.5
Q ss_pred EEecCCcc
Q psy606 185 VRVGGGWD 192 (210)
Q Consensus 185 VRVGGGW~ 192 (210)
.++.+||.
T Consensus 68 LK~~~GWv 75 (114)
T PF08830_consen 68 LKLEIGWV 75 (114)
T ss_dssp EEESSSEE
T ss_pred EecCCCEE
Confidence 45688884
No 15
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=23.27 E-value=1.1e+02 Score=25.14 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=9.0
Q ss_pred eeEEEecCCcc
Q psy606 182 HVMVRVGGGWD 192 (210)
Q Consensus 182 ~vMVRVGGGW~ 192 (210)
++++|.||||-
T Consensus 123 ~~Lrr~~~g~k 133 (155)
T TIGR03231 123 YVLKPTGDSWL 133 (155)
T ss_pred EEEEEeCCEEE
Confidence 56888999994
No 16
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=23.03 E-value=33 Score=26.27 Aligned_cols=9 Identities=67% Similarity=1.250 Sum_probs=6.8
Q ss_pred cCCcccHHH
Q psy606 188 GGGWDTLSH 196 (210)
Q Consensus 188 GGGW~tL~e 196 (210)
||||.|...
T Consensus 72 ~gGWITPsN 80 (87)
T PF15017_consen 72 GGGWITPSN 80 (87)
T ss_pred CCccccchh
Confidence 788888654
No 17
>PRK15231 fimbrial adhesin protein SefD; Provisional
Probab=22.69 E-value=92 Score=26.15 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=22.4
Q ss_pred ccCCCCCcCeeeec--------CCceeecCCceEEEEEeeCCeeEEEecC-Cccc
Q psy606 148 RCTCPTQFPMIRVS--------EGKYRIGDTKVLIFVRVLRSHVMVRVGG-GWDT 193 (210)
Q Consensus 148 ~c~c~~~~~v~r~~--------~GkYr~G~~~~~~~vRil~~~vMVRVGG-GW~t 193 (210)
...|.-.|.|+=-+ +|.|.|-+++- -++++=||+|| ||..
T Consensus 59 ri~cregfhiwmns~~~q~gg~P~~YIvqGk~d------sqh~LrVRlgGeGWqP 107 (150)
T PRK15231 59 HLFNREGKKILISSSLEKIKNTPGAYIIRGQNN------SAHKLRIRIGGEDWQP 107 (150)
T ss_pred eEEecCCeEEEEecchhhcCCCccEEEEECCCC------CcceEEEEecCCCccC
Confidence 45566677765332 45666654311 01236688876 7875
No 18
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.99 E-value=1.1e+02 Score=23.72 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=10.5
Q ss_pred CeeEEEecCCcc
Q psy606 181 SHVMVRVGGGWD 192 (210)
Q Consensus 181 ~~vMVRVGGGW~ 192 (210)
++|.|.+|+||-
T Consensus 69 ~~v~v~iG~g~~ 80 (129)
T cd00584 69 DKVLVDLGTGYY 80 (129)
T ss_pred CEEEEEcCCCEE
Confidence 689999999974
No 19
>PF10057 DUF2294: Uncharacterized conserved protein (DUF2294); InterPro: IPR018745 This domain of unknown function is found in a family of hypothetical bacterial proteins with no known function. It is also found at the C terminus of proteins provisionally annotated as response regulators.
Probab=21.35 E-value=1.3e+02 Score=23.41 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=29.0
Q ss_pred ecCCceEEEEEeeCCeeEEEecCCcccHHHhHhhc
Q psy606 167 IGDTKVLIFVRVLRSHVMVRVGGGWDTLSHYLDKH 201 (210)
Q Consensus 167 ~G~~~~~~~vRil~~~vMVRVGGGW~tL~eyL~kh 201 (210)
||-...-+.|.+.++.+.|+.-|--...+.||.+.
T Consensus 24 ~GkGP~~i~~~i~~~~iiv~l~g~LTp~Ek~L~~~ 58 (118)
T PF10057_consen 24 FGKGPKSIKVTISDDMIIVRLEGFLTPAEKFLAET 58 (118)
T ss_pred hCCCCcEEEEEEECCEEEEEEECCCCHHHHHHHhC
Confidence 45444467889999999999999999999998765
No 20
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=20.10 E-value=1.4e+02 Score=20.75 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=12.3
Q ss_pred EEeeCCeeEEEecCCcc
Q psy606 176 VRVLRSHVMVRVGGGWD 192 (210)
Q Consensus 176 vRil~~~vMVRVGGGW~ 192 (210)
++.....|++|.||+|.
T Consensus 90 ~~~~~~~v~~k~~g~W~ 106 (107)
T PF14534_consen 90 IRGRFTSVWKKQDGKWR 106 (107)
T ss_dssp EEEEEEEEEEEETTEEE
T ss_pred EEEEEEEEEEEeCCEEE
Confidence 34444578999999994
Done!