Query psy606
Match_columns 210
No_of_seqs 194 out of 242
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:39:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v5r_A Growth-arrest-specific 100.0 4.6E-33 1.6E-37 212.2 7.2 76 132-209 4-82 (97)
2 3oss_C Type 2 secretion system 56.5 6.8 0.00023 27.5 2.4 42 153-194 19-65 (68)
3 3a1m_A Chimera of thrombin cle 56.4 2.7 9.3E-05 33.6 0.4 23 180-202 113-135 (139)
4 2lnv_A General secretion pathw 37.7 11 0.00039 28.4 1.2 34 164-197 52-88 (104)
5 1s21_A ORF2; predominantly bet 36.5 6.8 0.00023 33.1 -0.2 15 195-209 52-66 (206)
6 2ww6_A Fibritin, T4 fibritin; 36.3 14 0.00047 21.7 1.1 17 182-198 11-27 (27)
7 2oyz_A UPF0345 protein VPA0057 34.9 24 0.00081 26.3 2.6 35 160-195 30-66 (94)
8 1v5r_A Growth-arrest-specific 32.2 17 0.00058 27.3 1.4 23 57-79 4-28 (97)
9 3eo6_A Protein of unknown func 24.9 46 0.0016 25.2 2.7 35 160-195 43-79 (106)
10 3n3f_A Collagen alpha-1(XV) ch 23.5 33 0.0011 23.0 1.4 12 182-193 32-43 (54)
11 4euy_A Uncharacterized protein 22.6 94 0.0032 20.9 3.8 60 137-201 35-103 (105)
12 4i4k_A Uncharacterized protein 21.9 29 0.00098 25.9 1.0 11 182-192 121-131 (143)
13 3i99_A UDP-N-acetylenolpyruvoy 21.9 2.4E+02 0.0084 24.9 7.3 62 140-202 41-114 (357)
14 1avy_A Fibritin, gpwac M; bact 20.6 31 0.0011 24.6 0.9 15 185-199 58-72 (74)
15 2rcd_A Uncharacterized protein 20.2 35 0.0012 24.6 1.2 12 181-192 107-118 (129)
16 3ul3_B Thioredoxin, thioredoxi 20.2 81 0.0028 22.2 3.2 36 164-201 91-128 (128)
No 1
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=99.98 E-value=4.6e-33 Score=212.22 Aligned_cols=76 Identities=47% Similarity=1.006 Sum_probs=71.4
Q ss_pred cCCcchhhHHHHHHhh--ccCCCCCcCeeeecCCceeecCCceEEEEEeeCC-eeEEEecCCcccHHHhHhhcCCCcccc
Q psy606 132 TNDLKSLDEMVRDLVA--RCTCPTQFPMIRVSEGKYRIGDTKVLIFVRVLRS-HVMVRVGGGWDTLSHYLDKHDPCRCKT 208 (210)
Q Consensus 132 ~~d~~~LD~~V~~i~~--~c~c~~~~~v~r~~~GkYr~G~~~~~~~vRil~~-~vMVRVGGGW~tL~eyL~khdPcr~~~ 208 (210)
.++.+.||++|++|++ +|+|+++|+|+|+++|||+||++ ++|||++++ ||||||||||+||+|||.+|||||+.+
T Consensus 4 ~~~~~~LD~~V~~iv~~~~c~c~~~~~v~rv~eGkYr~G~k--~i~vRil~~~~vMVRVGGGW~~L~~yL~khdpcr~~~ 81 (97)
T 1v5r_A 4 GSSGNLLDDAVKRISEDPPCKCPTKFCVERLSQGRYRVGEK--ILFIRMLHNKHVMVRVGGGWETFAGYLLKHDPCRMLQ 81 (97)
T ss_dssp CCCCCHHHHHHHHHHTSSCCCSSSCCCEEEEETTEEEETTE--EEEEEEETTTEEEEEETTEEEEHHHHHHHHCHHHHTS
T ss_pred cCCCchHHHHHHHHhcCCCccccCCCceEEeCCCcEEeCCe--EEEEEEecCCEEEEEeCCcHHHHHHHHHHcCcceeee
Confidence 4667899999999998 59999999999999999999996 999999996 999999999999999999999999986
Q ss_pred C
Q psy606 209 Y 209 (210)
Q Consensus 209 ~ 209 (210)
.
T Consensus 82 ~ 82 (97)
T 1v5r_A 82 I 82 (97)
T ss_dssp S
T ss_pred c
Confidence 4
No 2
>3oss_C Type 2 secretion system, GSPC; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=56.48 E-value=6.8 Score=27.46 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=30.8
Q ss_pred CCcCeeeec--CCceeecCCc---eEEEEEeeCCeeEEEecCCcccH
Q psy606 153 TQFPMIRVS--EGKYRIGDTK---VLIFVRVLRSHVMVRVGGGWDTL 194 (210)
Q Consensus 153 ~~~~v~r~~--~GkYr~G~~~---~~~~vRil~~~vMVRVGGGW~tL 194 (210)
..+.|+... .-.|++||+- ......|+.+||+++.+|-.++|
T Consensus 19 ~s~AII~~~g~q~~Y~vGd~i~g~~a~l~~V~~DrVIl~~~G~~E~L 65 (68)
T 3oss_C 19 RPGAVIEEGGKQQVYLQGERLDSHNAVIEEINRDHVMLRYQGKIERL 65 (68)
T ss_dssp SCEEEEEETTEEEEECTTCBCSSSSEEEEEECSSEEEEEETTEEEEE
T ss_pred CcEEEEecCCcEeEEECCCEeCCCCEEEEEEeCCEEEEecCCEEEEE
Confidence 345555422 2359999862 45678999999999999988876
No 3
>3a1m_A Chimera of thrombin cleavage site, tail-associate lysozyme, fibritin; bacteriophage T4, antimicrobial, bacteriolytic enzyme, glyco hydrolase; 2.00A {Synthetic}
Probab=56.39 E-value=2.7 Score=33.58 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=14.2
Q ss_pred CCeeEEEecCCcccHHHhHhhcC
Q psy606 180 RSHVMVRVGGGWDTLSHYLDKHD 202 (210)
Q Consensus 180 ~~~vMVRVGGGW~tL~eyL~khd 202 (210)
.+..-||+.|-|..|.-||..|+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~ 135 (139)
T 3a1m_A 113 DGQAYVRKDGEWVFLSTFLVEHH 135 (139)
T ss_dssp SSSEEEEETTEEECCC-------
T ss_pred CCceeEEEcCeEEEeehhhhhhc
Confidence 34788999999999999998775
No 4
>2lnv_A General secretion pathway protein C; transport protein; NMR {Dickeya dadantii}
Probab=37.65 E-value=11 Score=28.39 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=28.6
Q ss_pred ceeecCCc---eEEEEEeeCCeeEEEecCCcccHHHh
Q psy606 164 KYRIGDTK---VLIFVRVLRSHVMVRVGGGWDTLSHY 197 (210)
Q Consensus 164 kYr~G~~~---~~~~vRil~~~vMVRVGGGW~tL~ey 197 (210)
.|++|++- ......|+.++|+++.+|-.++|.=|
T Consensus 52 ~Y~vGd~I~g~~a~L~~I~~DrVII~~~Gr~E~L~l~ 88 (104)
T 2lnv_A 52 SRGVNEEVPGYNAKIVSIRPDRVVLQYQGRYEVLGLY 88 (104)
T ss_dssp EECTTEECSSSCCEEEEEETTEEEEEETTEEEEECCC
T ss_pred EEeCCCCcCCCCEEEEEEeCCEEEEecCCEEEEEEcc
Confidence 69999752 46688999999999999999998754
No 5
>1s21_A ORF2; predominantly beta-strand, chaperone; 2.00A {Pseudomonas syringae PV} SCOP: d.166.1.4
Probab=36.46 E-value=6.8 Score=33.11 Aligned_cols=15 Identities=40% Similarity=0.773 Sum_probs=12.9
Q ss_pred HHhHhhcCCCccccC
Q psy606 195 SHYLDKHDPCRCKTY 209 (210)
Q Consensus 195 ~eyL~khdPcr~~~~ 209 (210)
+.||.+|||||..++
T Consensus 52 ~~fL~~hDPMr~lgL 66 (206)
T 1s21_A 52 ENFLDAHDPMRVYDL 66 (206)
T ss_dssp HHHHHHHCHHHHTTC
T ss_pred HHHHhhcCcHHhhCC
Confidence 679999999998764
No 6
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=36.28 E-value=14 Score=21.70 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=14.2
Q ss_pred eeEEEecCCcccHHHhH
Q psy606 182 HVMVRVGGGWDTLSHYL 198 (210)
Q Consensus 182 ~vMVRVGGGW~tL~eyL 198 (210)
..-||..|-|..|..||
T Consensus 11 ~~Yvr~dg~WV~l~t~l 27 (27)
T 2ww6_A 11 QAYVRKFGEWVLLSTFL 27 (27)
T ss_dssp CEEEEETTEEEEGGGGC
T ss_pred ceeEEEcCeEEEccccC
Confidence 44599999999998876
No 7
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=34.86 E-value=24 Score=26.28 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=27.7
Q ss_pred ecCCceeecCCceEEEEEeeCCeeEEEecCC--cccHH
Q psy606 160 VSEGKYRIGDTKVLIFVRVLRSHVMVRVGGG--WDTLS 195 (210)
Q Consensus 160 ~~~GkYr~G~~~~~~~vRil~~~vMVRVGGG--W~tL~ 195 (210)
+.+|.|.||....= .+-|+.+.+-|+.-|. |.++.
T Consensus 30 m~pGeytF~T~~~E-~M~vvsG~~~V~lpg~~ew~~~~ 66 (94)
T 2oyz_A 30 MLPGEYTFGTQAPE-RMTVVKGALVVKRVGEADWTTYS 66 (94)
T ss_dssp ECSEEEEEEESSCE-EEEEEESEEEEEETTCSSCEEEE
T ss_pred EeceEEEEcCCCeE-EEEEEEeEEEEEcCCCCcCEEEC
Confidence 56899999976433 5578999999999887 98764
No 8
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=32.15 E-value=17 Score=27.33 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=18.8
Q ss_pred cccccchhHHHhhhccc--cCCCCC
Q psy606 57 TNDLKSLDEMVARRGAK--LGMPAP 79 (210)
Q Consensus 57 ~~dlrnLde~V~~~~~~--~g~~~P 79 (210)
-|+.++||++|++++.+ |.|+.+
T Consensus 4 ~~~~~~LD~~V~~iv~~~~c~c~~~ 28 (97)
T 1v5r_A 4 GSSGNLLDDAVKRISEDPPCKCPTK 28 (97)
T ss_dssp CCCCCHHHHHHHHHHTSSCCCSSSC
T ss_pred cCCCchHHHHHHHHhcCCCccccCC
Confidence 47889999999999985 777644
No 9
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=24.85 E-value=46 Score=25.25 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=27.5
Q ss_pred ecCCceeecCCceEEEEEeeCCeeEEEecC--CcccHH
Q psy606 160 VSEGKYRIGDTKVLIFVRVLRSHVMVRVGG--GWDTLS 195 (210)
Q Consensus 160 ~~~GkYr~G~~~~~~~vRil~~~vMVRVGG--GW~tL~ 195 (210)
+.+|-|.||....= .+-|+.+.+-|+.-| .|.++.
T Consensus 43 m~PGeY~F~T~~~E-~MevvsG~l~V~LpG~~eW~~~~ 79 (106)
T 3eo6_A 43 LHPGVYTLSSEVAE-TIRVLSGMAYYHAEGANDVQELH 79 (106)
T ss_dssp ECSEEEEECCSSCE-EEEEEEEEEEEECTTCSSCEEEE
T ss_pred EeeeEEEecCCCcE-EEEEEEeEEEEECCCCccCEEEC
Confidence 56899999986543 456889999999998 698764
No 10
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=23.54 E-value=33 Score=22.98 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=10.0
Q ss_pred eeEEEecCCccc
Q psy606 182 HVMVRVGGGWDT 193 (210)
Q Consensus 182 ~vMVRVGGGW~t 193 (210)
.+-|||-+||..
T Consensus 32 eLyiRVr~Gwr~ 43 (54)
T 3n3f_A 32 EFFIRVRDGWKK 43 (54)
T ss_dssp EEEEEETTEEEE
T ss_pred eEEEEEcCceee
Confidence 566999999975
No 11
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=22.64 E-value=94 Score=20.86 Aligned_cols=60 Identities=10% Similarity=0.164 Sum_probs=32.7
Q ss_pred hhhHHHHHHhhccCCCCCcCeeeec-------CCceeecCCceEEEEEeeCCeeEEEecCC--cccHHHhHhhc
Q psy606 137 SLDEMVRDLVARCTCPTQFPMIRVS-------EGKYRIGDTKVLIFVRVLRSHVMVRVGGG--WDTLSHYLDKH 201 (210)
Q Consensus 137 ~LD~~V~~i~~~c~c~~~~~v~r~~-------~GkYr~G~~~~~~~vRil~~~vMVRVGGG--W~tL~eyL~kh 201 (210)
.+...+.++.... + .+.+.++. -.+|.+..-..+++. .++.++.|..|. ...|.++|.++
T Consensus 35 ~~~p~~~~~~~~~--~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~--~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 35 VMLRKVNYVLENY--N-YVEKIEILLQDMQEIAGRYAVFTGPTVLLF--YNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp HHHHHHHHHHHTC--T-TEEEEEEEECCC---------CCCCEEEEE--ETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--C-CceEEEEECCCCHHHHHhcCCCCCCEEEEE--eCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 4455555555544 1 34444432 235666655555554 478888887774 67788888765
No 12
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=21.92 E-value=29 Score=25.89 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=9.4
Q ss_pred eeEEEecCCcc
Q psy606 182 HVMVRVGGGWD 192 (210)
Q Consensus 182 ~vMVRVGGGW~ 192 (210)
.|+||.+|||-
T Consensus 121 ~v~~r~~g~Wr 131 (143)
T 4i4k_A 121 WLAVEQDGQWR 131 (143)
T ss_dssp EEEEEETTEEE
T ss_pred EEEEEECCcEE
Confidence 37899999995
No 13
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=21.89 E-value=2.4e+02 Score=24.93 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=39.7
Q ss_pred HHHHHHhhccCCCCCcCeeeecCCc-eeecCCceEEEEEe-eC--------CeeEEEecCC--cccHHHhHhhcC
Q psy606 140 EMVRDLVARCTCPTQFPMIRVSEGK-YRIGDTKVLIFVRV-LR--------SHVMVRVGGG--WDTLSHYLDKHD 202 (210)
Q Consensus 140 ~~V~~i~~~c~c~~~~~v~r~~~Gk-Yr~G~~~~~~~vRi-l~--------~~vMVRVGGG--W~tL~eyL~khd 202 (210)
+.|..++..|. ....++.-++.|. ..|++...-+.+++ ++ ....|+||+| |.+|.+|+.+|.
T Consensus 41 eel~~~v~~a~-~~~ipv~vlGgGSNll~~d~~~GvVI~l~~~~i~v~~~~~~~~v~v~AG~~~~~l~~~a~~~G 114 (357)
T 3i99_A 41 DDLKALYCSAE-WASLPKLIIGKGSNMLFTCHYTGMIVVNRLNGIEHQQDDDYHRLHVAGGEDWPSLVSWCVEQG 114 (357)
T ss_dssp HHHHHHHSSST-TTTSCEEEESSCTTEEECSCEEEEEEEECCCCEEEEECSSEEEEEEETTSBHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCCEEEECCCcCcccCCCCCeEEEEcCCCceEEeccCCceEEEEeCCCcHHHHHHHHHHcC
Confidence 45667777664 3567888787776 34444322222222 22 2457999999 999999998875
No 14
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.64 E-value=31 Score=24.61 Aligned_cols=15 Identities=47% Similarity=0.840 Sum_probs=13.6
Q ss_pred EEecCCcccHHHhHh
Q psy606 185 VRVGGGWDTLSHYLD 199 (210)
Q Consensus 185 VRVGGGW~tL~eyL~ 199 (210)
||+.|-|..|.-||.
T Consensus 58 VrkDgaWVlL~t~ln 72 (74)
T 1avy_A 58 VRKDGEWVLLSTFLS 72 (74)
T ss_dssp EEETTEEEEGGGGSS
T ss_pred EEecCeeEEeecccc
Confidence 999999999999963
No 15
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=20.18 E-value=35 Score=24.58 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=10.2
Q ss_pred CeeEEEecCCcc
Q psy606 181 SHVMVRVGGGWD 192 (210)
Q Consensus 181 ~~vMVRVGGGW~ 192 (210)
..|.+|.+|||-
T Consensus 107 t~v~~r~~~gWr 118 (129)
T 2rcd_A 107 MQTWVKMPEGWR 118 (129)
T ss_dssp EEEEEEETTEEE
T ss_pred EEEEEECCCcEE
Confidence 358999999995
No 16
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=20.17 E-value=81 Score=22.21 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=24.3
Q ss_pred ceeecCCceEEEEEeeCCeeEEEecCC--cccHHHhHhhc
Q psy606 164 KYRIGDTKVLIFVRVLRSHVMVRVGGG--WDTLSHYLDKH 201 (210)
Q Consensus 164 kYr~G~~~~~~~vRil~~~vMVRVGGG--W~tL~eyL~kh 201 (210)
+|.+..-..++++ .++.++.|..|. .+.|.+||.+|
T Consensus 91 ~~~v~~~Pt~~~~--~~G~~~~~~~G~~~~~~l~~~l~~~ 128 (128)
T 3ul3_B 91 KFSVKSLPTIILL--KNKTMLARKDHFVSSNDLIALIKKH 128 (128)
T ss_dssp HTTCCSSSEEEEE--ETTEEEEEESSCCCHHHHHHHHTTC
T ss_pred HcCCCCcCEEEEE--ECCEEEEEecCCCCHHHHHHHHHhC
Confidence 3555554455554 478888888875 56788888765
Done!