RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy606
(210 letters)
>gnl|CDD|128539 smart00243, GAS2, Growth-Arrest-Specific Protein 2 Domain.
GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain.
Length = 73
Score = 129 bits (327), Expect = 1e-39
Identities = 42/70 (60%), Positives = 55/70 (78%)
Query: 138 LDEMVRDLVARCTCPTQFPMIRVSEGKYRIGDTKVLIFVRVLRSHVMVRVGGGWDTLSHY 197
+D+ V+ +V C CPT+F + ++SEGKYR GD+++L VR+LRS VMVRVGGGW+TL Y
Sbjct: 3 IDDEVKRIVEDCKCPTKFQVEKISEGKYRFGDSQILRLVRILRSTVMVRVGGGWETLDEY 62
Query: 198 LDKHDPCRCK 207
L KHDPCR K
Sbjct: 63 LLKHDPCRAK 72
>gnl|CDD|111117 pfam02187, GAS2, Growth-Arrest-Specific Protein 2 Domain.
Length = 73
Score = 129 bits (326), Expect = 2e-39
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 138 LDEMVRDLVARCTCPTQFPMIRVSEGKYRIGDTKVLIFVRVLRSHVMVRVGGGWDTLSHY 197
LD+ V+ +V C CP +F + +VSEGKYR+GD+++L VR+LRSHVMVRVGGGW+TL Y
Sbjct: 3 LDDEVKRIVEDCKCPDKFCVEQVSEGKYRVGDSQILRLVRILRSHVMVRVGGGWETLDEY 62
Query: 198 LDKHDPCRC 206
L KHDPCR
Sbjct: 63 LLKHDPCRA 71
>gnl|CDD|214474 smart00022, PLAc, Cytoplasmic phospholipase A2, catalytic subunit.
Cytosolic phospholipases A2 hydrolyse arachidonyl
phospholipids. Family includes phospholipases B
isoforms.
Length = 549
Score = 35.1 bits (81), Expect = 0.018
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 36 LEDDLSDSDDEAQYGPLP--------QIVTNDLKSLDEMVARRGAKLGMPAPM--LIQLE 85
L+D SDSDD A Y P P +++TN L D + G + G P+ L+Q E
Sbjct: 331 LKDLSSDSDDIAIYPPNPFKDDAYVQRMLTNSLGDSDLLNLVDGGEDGENIPLSPLLQPE 390
Query: 86 REIDREIAAD 95
R +D A D
Sbjct: 391 RSVDVIFAVD 400
Score = 29.3 bits (66), Expect = 1.4
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 111 LEDDLSDSDDEAQYGPLPQIVTNDLKSLDEMVRDLVAR 148
L+D SDSDD A Y P P D + M+ + +
Sbjct: 331 LKDLSSDSDDIAIYPPNPF---KDDAYVQRMLTNSLGD 365
>gnl|CDD|201944 pfam01735, PLA2_B, Lysophospholipase catalytic domain. This family
consists of Lysophospholipase / phospholipase B
EC:3.1.1.5 and cytosolic phospholipase A2 EC:3.1.4 which
also has a C2 domain pfam00168. Phospholipase B enzymes
catalyze the release of fatty acids from
lysophsopholipids and are capable in vitro of
hydrolysing all phospholipids extractable form yeast
cells. Cytosolic phospholipase A2 associates with
natural membranes in response to physiological increases
in Ca2+ and selectively hydrolyses arachidonyl
phospholipids, the aligned region corresponds the the
carboxy-terminal Ca2+-independent catalytic domain of
the protein as discussed in.
Length = 490
Score = 31.6 bits (72), Expect = 0.26
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 36 LEDDLSDSDDEAQYGPLP--------QIVTNDLKSLDEMVARRGAKLGMPAPM--LIQLE 85
L+D DSDD +QY P P Q T + D + G + G P+ L+Q E
Sbjct: 260 LKDLSEDSDDISQYPPNPFQDANDINQNATQSIVDSDTLFLVDGGEDGQNIPLWPLLQPE 319
Query: 86 REID 89
R++D
Sbjct: 320 RDVD 323
Score = 28.5 bits (64), Expect = 2.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 111 LEDDLSDSDDEAQYGPLP 128
L+D DSDD +QY P P
Sbjct: 260 LKDLSEDSDDISQYPPNP 277
>gnl|CDD|212516 cd09990, Agmatinase-like, Agmatinase-like family. Agmatinase
subfamily currently includes metalloenzymes such as
agmatinase, guanidinobutyrase, guanidopropionase,
formimidoylglutamase and proclavaminate
amidinohydrolase. Agmatinase (agmatine ureohydrolase;
SpeB; EC=3.5.3.11) is the key enzyme in the synthesis of
polyamine putrescine; it catalyzes hydrolysis of
agmatine to yield putrescine and urea. This enzyme has
been found in bacteria, archaea and eukaryotes,
requiring divalent Mn and sometimes Zn, Co or Ca for
activity. In mammals, the highest level of agmatinase
mRNA was found in liver and kidney. However, catabolism
of agmatine via agmatinase apparently is a not major
path; it is mostly catabolized via diamine oxidase.
Agmatinase has been shown to be down-regulated in tumor
renal cells. Guanidinobutyrase (Gbh, EC=3.5.3.7)
catalyzes hydrolysis of 4-guanidinobutanoate to yield
4-aminobutanoate and urea in arginine degradation
pathway. Activity has been shown for purified enzyme
from Arthrobacter sp. KUJ 8602. Additionally,
guanidinobutyrase is able to hydrolyze D-arginine,
3-guanidinopropionate, 5-guanidinovaleriate and
L-arginine with much less affinity, having divalent Zn
ions for catalysis. Proclavaminate amidinohydrolase
(Pah, EC 3.5.3.22) hydrolyzes amidinoproclavaminate to
yield proclavaminate and urea in clavulanic acid
biosynthesis. Activity has been shown for purified
enzyme from Streptomyces clavuligerus. Clavulanic acid
is the effective inhibitor of beta-lactamases. This acid
is used in combination with the penicillin amoxicillin
to prevent antibiotic's beta-lactam rings from
hydrolysis, thus keeping the antibiotics biologically
active.
Length = 275
Score = 30.6 bits (70), Expect = 0.48
Identities = 35/141 (24%), Positives = 51/141 (36%), Gaps = 38/141 (26%)
Query: 69 RRGAKLGMPAPMLIQLEREIDREIAADKKKLGFSDNEYYDADLEDDLSDSDDEAQYGPLP 128
R GA+ G P I RE +A G+S Y DL D D YG +P
Sbjct: 15 RPGARFG---PRAI-------REASA-----GYS---TYSPDLGVDDFDDLTVVDYGDVP 56
Query: 129 QIVTNDLKSLD---EMVRDLVARCTCPTQ--------FPMIR-VSEGKY-RIGDTKVLIF 175
+ K+ D E V ++ P +P +R ++E ++G
Sbjct: 57 VDPGDIEKTFDRIREAVAEIAEAGAIPIVLGGDHSITYPAVRGLAERHKGKVG------- 109
Query: 176 VRVLRSHVMVRVGGGWDTLSH 196
V +H+ R G LSH
Sbjct: 110 VIHFDAHLDTRDTDGGGELSH 130
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 30.5 bits (69), Expect = 0.59
Identities = 32/132 (24%), Positives = 48/132 (36%), Gaps = 20/132 (15%)
Query: 26 FSDNEYYDA--DLEDDLSDSDDEAQYGPLPQ-------IVTNDLKSLDEMVARRGAKLGM 76
FSD + A D E L+ + +A G +P E +A A G
Sbjct: 15 FSDRAFLRAMLDFEAALARA--QADAGLIPAEAAAAIEAACAAAAPDLEALAHAAATAGN 72
Query: 77 PAPMLIQLEREIDREIAADKKKLGFSDNEYYDADLEDDLSDSDDEAQYGPLPQIVTNDLK 136
P L++ R+ AA G + + D L L D+ D ++ DL
Sbjct: 73 PVIPLVKALRKAVAGEAARYVHRGATSQDVIDTSLMLQLRDALD---------LLLADLG 123
Query: 137 SLDEMVRDLVAR 148
L + + DL AR
Sbjct: 124 RLADALADLAAR 135
>gnl|CDD|224948 COG2037, Ftr, Formylmethanofuran:tetrahydromethanopterin
formyltransferase [Energy production and conversion].
Length = 297
Score = 29.3 bits (66), Expect = 1.2
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 97 KKLGFSDNEYYDADLEDDLSDSDDEAQYGPLPQIVTN--DLKSLDEMVRD-LVARCTCPT 153
LG + N Y L+D + DS+ + +IV N D +++ E +R + A C P
Sbjct: 214 PFLGATTNHKYCPTLKDVVEDSEVPEGVKAIYEIVINGLDEEAVKEAMRVGIEAACRVPG 273
Query: 154 QFPMIRVSEGKY--RIGDTKV 172
++++S G Y ++G ++
Sbjct: 274 ---VVKISAGNYGGKLGKYRI 291
Score = 28.9 bits (65), Expect = 2.0
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 22 KKLGFSDNEYYDADLEDDLSDSDDEAQYGPLPQIVTNDLKSLDEMVARRGAKLGMPA 78
LG + N Y L+D + DS+ + +IV N LDE + ++G+ A
Sbjct: 214 PFLGATTNHKYCPTLKDVVEDSEVPEGVKAIYEIVIN---GLDEEAVKEAMRVGIEA 267
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic
obstructive pulmonary disease etc. Disease-causing
mutations have been studied by 36Cl efflux assays in
vitro cell cultures and electrophysiology, all of which
point to the impairment of chloride channel stability
and not the biosynthetic processing per se [Transport
and binding proteins, Anions].
Length = 1490
Score = 27.6 bits (61), Expect = 5.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 8 QLEREIDREIAADKKK 23
+LERE DRE+A+ KK
Sbjct: 52 RLEREWDRELASAKKN 67
Score = 27.6 bits (61), Expect = 5.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 83 QLEREIDREIAADKKK 98
+LERE DRE+A+ KK
Sbjct: 52 RLEREWDRELASAKKN 67
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.138 0.404
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,229,020
Number of extensions: 1102955
Number of successful extensions: 1240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1240
Number of HSP's successfully gapped: 36
Length of query: 210
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 117
Effective length of database: 6,812,680
Effective search space: 797083560
Effective search space used: 797083560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)