RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy606
         (210 letters)



>d1v5ra1 d.82.4.1 (A:7-91) Growth-arrest-specific protein 2, GAS2
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score =  117 bits (295), Expect = 3e-35
 Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 5/77 (6%)

Query: 136 KSLDEMVRDLV--ARCTCPTQFPMIRVSEGKYRIGDTKVLIFVRVLRS-HVMVRVGGGWD 192
             LD+ V+ +     C CPT+F + R+S+G+YR+G+   ++F+R+L + HVMVRVGGGW+
Sbjct: 2   NLLDDAVKRISEDPPCKCPTKFCVERLSQGRYRVGEK--ILFIRMLHNKHVMVRVGGGWE 59

Query: 193 TLSHYLDKHDPCRCKTY 209
           T + YL KHDPCR    
Sbjct: 60  TFAGYLLKHDPCRMLQI 76


>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 490

 Score = 27.4 bits (60), Expect = 1.6
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 6/112 (5%)

Query: 55  IVTNDLKSLDEMVARRGAKLGMPAPMLIQLEREIDREIA------ADKKKLGFSDNEYYD 108
            +  + + + E +      L           R ++R I       A+ + L    +  Y 
Sbjct: 236 TIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYA 295

Query: 109 ADLEDDLSDSDDEAQYGPLPQIVTNDLKSLDEMVRDLVARCTCPTQFPMIRV 160
           A ++ DL+D  +     P        L ++     D V   +C T     R 
Sbjct: 296 AVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRA 347


>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline
           dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
          Length = 172

 Score = 25.9 bits (57), Expect = 3.1
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 14/92 (15%)

Query: 4   PMLIQLEREIDREIAADKKKLGFSD-------NEYYDADLEDDLSDSDDEAQYGPLP--- 53
           P +  L  ++D E  A  K    +         E Y                Y  +    
Sbjct: 41  PSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPI 100

Query: 54  ----QIVTNDLKSLDEMVARRGAKLGMPAPML 81
               +    D+ +    ++  G  + +P P++
Sbjct: 101 NLNTRYFFEDVSTGLVPLSELGRAVNVPTPLI 132


>d1ig0a2 c.100.1.1 (A:3-223) Thiamin pyrophosphokinase, catalytic
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 221

 Score = 25.4 bits (55), Expect = 5.0
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 114 DLSDSDDEAQYGPLPQIVTNDLKSLDEMVRDLVARCTCP 152
           D  D D+  +   LP  +  DL SL E V     +    
Sbjct: 75  DYLDDDETLRIKYLPNYIIGDLDSLSEKVYKYYRKNKVT 113


>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
          {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
          Length = 571

 Score = 25.7 bits (55), Expect = 5.7
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 9/40 (22%)

Query: 33 DADLEDDLSDSDDEAQYG---------PLPQIVTNDLKSL 63
          DADL+  ++ +                PL QI  +++K++
Sbjct: 1  DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNV 40



 Score = 25.7 bits (55), Expect = 5.7
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 9/40 (22%)

Query: 108 DADLEDDLSDSDDEAQYG---------PLPQIVTNDLKSL 138
           DADL+  ++ +                PL QI  +++K++
Sbjct: 1   DADLDKQVNTAGAWPIATGGYYSQHNSPLAQINKSNVKNV 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 824,237
Number of extensions: 38488
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 13
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)