Query psy6063
Match_columns 108
No_of_seqs 122 out of 1311
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 16:42:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 99.5 3.3E-14 7.2E-19 119.7 6.6 81 3-108 2-82 (557)
2 PRK15049 L-asparagine permease 99.3 3.3E-12 7.1E-17 106.1 6.0 61 47-108 21-81 (499)
3 PRK10249 phenylalanine transpo 99.2 7.9E-12 1.7E-16 102.3 4.9 61 47-108 14-74 (458)
4 KOG1286|consensus 99.2 4.8E-12 1E-16 107.6 0.7 60 49-108 25-84 (554)
5 PRK10836 lysine transporter; P 99.2 2.5E-11 5.4E-16 100.0 4.8 60 48-108 9-69 (489)
6 PRK11387 S-methylmethionine tr 99.2 3.6E-11 7.7E-16 98.5 5.0 61 47-108 7-68 (471)
7 PRK11049 D-alanine/D-serine/gl 99.1 6.2E-11 1.3E-15 97.2 4.3 59 49-108 15-73 (469)
8 PRK10238 aromatic amino acid t 99.1 9.1E-11 2E-15 96.0 5.0 59 49-108 7-65 (456)
9 PRK10746 putative transport pr 99.1 7.8E-11 1.7E-15 96.8 4.5 59 49-108 5-63 (461)
10 COG0833 LysP Amino acid transp 99.1 7.2E-11 1.6E-15 100.2 3.9 56 51-107 41-97 (541)
11 PRK10580 proY putative proline 99.0 2.1E-10 4.6E-15 93.5 4.6 59 49-108 4-62 (457)
12 TIGR01773 GABAperm gamma-amino 99.0 4.5E-10 9.7E-15 91.2 4.5 59 49-108 7-65 (452)
13 COG1113 AnsP Gamma-aminobutyra 99.0 4.3E-10 9.4E-15 94.0 3.6 57 48-105 7-63 (462)
14 TIGR00913 2A0310 amino acid pe 98.8 3.3E-09 7.1E-14 86.6 4.8 55 53-108 1-56 (478)
15 PRK10435 cadB lysine/cadaverin 98.8 4.7E-09 1E-13 85.3 4.1 55 52-108 3-57 (435)
16 PRK11357 frlA putative fructos 98.8 6.8E-09 1.5E-13 84.2 4.9 59 49-108 3-63 (445)
17 TIGR00911 2A0308 L-type amino 98.8 7.5E-09 1.6E-13 85.3 4.3 60 48-108 36-97 (501)
18 PRK10655 potE putrescine trans 98.7 9.2E-09 2E-13 83.1 4.4 55 52-108 4-58 (438)
19 PRK10644 arginine:agmatin anti 98.7 1E-08 2.2E-13 83.3 4.5 58 49-108 3-60 (445)
20 PRK11021 putative transporter; 98.7 1.1E-08 2.3E-13 82.3 4.1 52 56-108 1-52 (410)
21 TIGR03810 arg_ornith_anti argi 98.7 2.3E-08 5.1E-13 81.9 4.4 54 54-108 1-55 (468)
22 TIGR00905 2A0302 transporter, 98.7 2.6E-08 5.6E-13 81.8 4.5 56 52-108 5-61 (473)
23 KOG1287|consensus 98.6 1.9E-08 4.1E-13 84.8 1.8 61 47-108 5-67 (479)
24 TIGR00909 2A0306 amino acid tr 98.5 1.8E-07 3.8E-12 75.1 4.6 56 52-108 1-56 (429)
25 PRK10197 gamma-aminobutyrate t 98.4 1.3E-07 2.7E-12 77.4 2.4 45 63-108 1-45 (446)
26 TIGR03428 ureacarb_perm permea 98.3 4.7E-07 1E-11 74.4 3.9 60 48-108 7-67 (475)
27 TIGR00908 2A0305 ethanolamine 98.2 9E-07 1.9E-11 71.7 3.9 58 49-108 2-60 (442)
28 TIGR00907 2A0304 amino acid pe 98.1 2.8E-06 6E-11 69.6 3.5 60 48-108 6-67 (482)
29 TIGR00930 2a30 K-Cl cotranspor 98.0 4.6E-06 1E-10 75.1 3.2 57 51-108 73-131 (953)
30 TIGR00912 2A0309 spore germina 97.7 2.7E-05 5.9E-10 61.4 2.6 53 55-108 2-54 (359)
31 COG0531 PotE Amino acid transp 97.4 0.00019 4.1E-09 57.4 4.5 60 47-108 5-65 (466)
32 PF00324 AA_permease: Amino ac 97.3 5.2E-05 1.1E-09 62.1 -0.3 48 60-108 1-49 (478)
33 PF13520 AA_permease_2: Amino 97.2 0.00025 5.4E-09 56.6 2.9 50 56-108 1-51 (426)
34 PRK15238 inner membrane transp 96.8 0.0014 3.1E-08 54.2 3.9 53 52-108 5-58 (496)
35 TIGR00837 araaP aromatic amino 96.6 0.00072 1.6E-08 53.7 1.0 46 62-108 3-48 (381)
36 PHA02764 hypothetical protein; 95.8 0.015 3.3E-07 48.0 4.4 60 48-108 6-66 (399)
37 KOG1289|consensus 95.7 0.0065 1.4E-07 52.4 2.3 60 47-107 41-102 (550)
38 PF01235 Na_Ala_symp: Sodium:a 93.5 0.16 3.5E-06 42.5 5.2 46 53-99 16-62 (416)
39 PF03222 Trp_Tyr_perm: Tryptop 91.9 0.26 5.6E-06 40.4 4.3 49 55-105 2-51 (394)
40 PRK10483 tryptophan permease; 91.3 0.4 8.6E-06 40.1 4.9 53 51-105 6-59 (414)
41 COG0814 SdaC Amino acid permea 90.9 0.4 8.7E-06 39.6 4.5 54 52-107 5-59 (415)
42 COG1115 AlsT Na+/alanine sympo 90.6 0.79 1.7E-05 39.0 6.1 47 52-99 59-106 (452)
43 TIGR03813 put_Glu_GABA_T putat 89.9 0.35 7.6E-06 39.8 3.3 50 54-108 1-51 (474)
44 PRK09664 tryptophan permease T 89.7 0.59 1.3E-05 39.1 4.6 48 57-106 10-58 (415)
45 PF03845 Spore_permease: Spore 89.2 0.41 8.9E-06 37.4 3.1 49 55-105 1-49 (320)
46 TIGR00814 stp serine transport 85.1 0.65 1.4E-05 38.2 2.2 39 61-104 8-46 (397)
47 TIGR00835 agcS amino acid carr 82.7 1.9 4.1E-05 36.3 4.0 42 54-96 45-87 (425)
48 PRK15132 tyrosine transporter 81.1 2.9 6.2E-05 34.7 4.6 30 57-88 4-33 (403)
49 TIGR00910 2A0307_GadC glutamat 80.4 2.1 4.6E-05 35.9 3.6 51 53-108 3-54 (507)
50 TIGR00796 livcs branched-chain 77.2 3.2 7E-05 34.2 3.7 42 65-107 4-48 (378)
51 PRK13629 threonine/serine tran 64.9 9.4 0.0002 32.4 3.8 40 63-104 26-66 (443)
52 PF12666 PrgI: PrgI family pro 61.6 20 0.00044 23.1 4.3 32 49-80 10-41 (93)
53 KOG1303|consensus 58.5 20 0.00044 30.2 4.8 31 51-81 33-63 (437)
54 PF01490 Aa_trans: Transmembra 58.1 15 0.00033 28.8 3.8 32 55-88 2-33 (409)
55 PF11023 DUF2614: Protein of u 51.2 23 0.00049 25.0 3.3 21 60-81 17-37 (114)
56 COG5336 Uncharacterized protei 49.1 27 0.00058 24.7 3.4 50 50-101 37-87 (116)
57 PF12597 DUF3767: Protein of u 45.1 19 0.00042 25.1 2.2 42 61-104 45-86 (118)
58 PLN03074 auxin influx permease 37.2 93 0.002 26.2 5.5 42 56-99 46-88 (473)
59 KOG1304|consensus 32.4 1.6E+02 0.0036 25.2 6.2 33 54-88 45-77 (449)
60 PF05915 DUF872: Eukaryotic pr 30.2 1.1E+02 0.0023 21.3 4.0 22 59-80 41-62 (115)
61 KOG1305|consensus 27.6 1.1E+02 0.0023 25.7 4.2 32 54-87 4-35 (411)
62 TIGR02106 cyd_oper_ybgT cyd op 22.8 1.1E+02 0.0023 16.7 2.3 13 92-104 4-16 (30)
63 TIGR03050 PS_I_psaK_plant phot 21.7 1.2E+02 0.0025 20.3 2.8 29 50-78 48-77 (83)
64 PTZ00206 amino acid transporte 21.6 1.6E+02 0.0034 24.6 4.2 30 57-88 61-90 (467)
65 PHA00727 hypothetical protein 21.2 30 0.00066 27.1 -0.1 40 52-92 206-245 (278)
66 PF04156 IncA: IncA protein; 20.8 1.1E+02 0.0024 22.0 2.8 7 70-76 19-25 (191)
67 PF08173 YbgT_YccB: Membrane b 20.6 1.3E+02 0.0028 16.1 2.3 13 92-104 4-16 (28)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.50 E-value=3.3e-14 Score=119.74 Aligned_cols=81 Identities=37% Similarity=0.649 Sum_probs=70.4
Q ss_pred hHHHHHHHhhccccCCCCCchhhhccCCCCCCCCCCCCCccccCCCccccccccChhhHHHHhhcceecchhhhccHHhH
Q psy6063 3 RLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVA 82 (108)
Q Consensus 3 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~ 82 (108)
....|.++|+|||+++.+ +.++++++|+|+.++++++++|++||+|+|+.+|.++
T Consensus 2 ~~~~~~~~~~r~k~~~~~-------------------------~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a 56 (557)
T TIGR00906 2 AVLTFARCLIRRKIVDLD-------------------------SREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVA 56 (557)
T ss_pred chHHHHHHHhccCCcccc-------------------------cccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHH
Confidence 456788999999999651 1224469999999999999999999999999999876
Q ss_pred HhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 83 RNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 83 ~~~aGp~~llawil~giv~l~~al~y 108 (108)
...+||+++++|+++|+.+++.++||
T Consensus 57 ~~~aGp~~~ls~liagv~~l~~al~y 82 (557)
T TIGR00906 57 RNDSGPAIVLSFLISGLAAVLSGFCY 82 (557)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999997
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=99.30 E-value=3.3e-12 Score=106.05 Aligned_cols=61 Identities=23% Similarity=0.525 Sum_probs=55.4
Q ss_pred CCccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 47 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 47 ~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
..++++||+|+.+|++++++|++||+|+|+++|.++ ..+||+.+++|+++++++++.++||
T Consensus 21 ~~~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~-~~aGp~~il~~li~~i~~~~v~~sl 81 (499)
T PRK15049 21 AHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARL-QMAGPALALVYLICGLFSFFILRAL 81 (499)
T ss_pred CCchhhhccCCHhHhHHHhhhccccchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 334469999999999999999999999999999988 5899988899999999999999875
No 3
>PRK10249 phenylalanine transporter; Provisional
Probab=99.24 E-value=7.9e-12 Score=102.32 Aligned_cols=61 Identities=23% Similarity=0.549 Sum_probs=56.0
Q ss_pred CCccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 47 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 47 ~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
.+.++++|+|+.+|++++++|++||+|+|+++|.++ +.+||+++++|+++|+++++.++||
T Consensus 14 ~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~-~~aGp~~~l~~li~~~~~~~~~~~~ 74 (458)
T PRK10249 14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAI-QMAGPAVLLGYGVAGIIAFLIMRQL 74 (458)
T ss_pred CCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 444579999999999999999999999999999988 5799999999999999999999886
No 4
>KOG1286|consensus
Probab=99.17 E-value=4.8e-12 Score=107.65 Aligned_cols=60 Identities=42% Similarity=0.685 Sum_probs=54.6
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
++++||+|+.+|++++++|++||+|+|+++|.++.+.+||+++++|+++|+.+++.++||
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~ 84 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCL 84 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999864444499999999999999999987
No 5
>PRK10836 lysine transporter; Provisional
Probab=99.17 E-value=2.5e-11 Score=99.96 Aligned_cols=60 Identities=33% Similarity=0.662 Sum_probs=55.2
Q ss_pred CccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063 48 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y 108 (108)
++.++||+|+.+|++++++|++||+|+|+++|.++ +.+|| +++++|+++|+++++.++||
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~-~~aGp~~~l~a~~i~g~~~~~~al~~ 69 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATI-SQAGPGGALLSYMLIGLMVYFLMTSL 69 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHH-HhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34569999999999999999999999999999988 57999 58999999999999999986
No 6
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.16 E-value=3.6e-11 Score=98.52 Aligned_cols=61 Identities=23% Similarity=0.500 Sum_probs=55.4
Q ss_pred CCccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063 47 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 47 ~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y 108 (108)
++..++||+|+.++++++++|++||+|+|+++|.++ +.+|| +++++|+++|+++++.++||
T Consensus 7 ~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~-~~~G~~~~~l~~~i~~~~~~~~~~~~ 68 (471)
T PRK11387 7 QQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYII-STTGAAGTLLAYLIGALVVYLVMQCL 68 (471)
T ss_pred CcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334569999999999999999999999999999988 57998 78999999999999999986
No 7
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.11 E-value=6.2e-11 Score=97.20 Aligned_cols=59 Identities=22% Similarity=0.507 Sum_probs=54.2
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
.++++|+|++++++++++|++||+|+|+++|.++ +.+||+.+++|+++++++++.++||
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~-~~aGp~~i~~~~i~~i~~~~~~~s~ 73 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTI-SLAGPSIIFVYMIIGFMLFFVMRAM 73 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHH-hhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999988 5799988999999999999988874
No 8
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.10 E-value=9.1e-11 Score=96.04 Aligned_cols=59 Identities=27% Similarity=0.546 Sum_probs=54.7
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
++++||+|+.+|++++++|++||+|+|+++|.++ +.+||+++++|+++|+++++.++||
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~Gp~~i~~~~i~gi~~~~v~~s~ 65 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVI-QSAGPGIILGYAIAGFIAFLIMRQL 65 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHH-HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 4469999999999999999999999999999988 5799988999999999999999875
No 9
>PRK10746 putative transport protein YifK; Provisional
Probab=99.10 E-value=7.8e-11 Score=96.80 Aligned_cols=59 Identities=32% Similarity=0.593 Sum_probs=54.3
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
++++||+|+.+|++++++|++||+|+|++++..+ +.+||+++++|+++|+++++.++|+
T Consensus 5 ~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l-~~aGp~~~l~~~i~g~~~~~v~~~~ 63 (461)
T PRK10746 5 KPELQRGLEARHIELIALGGTIGVGLFMGAASTL-KWAGPSVLLAYIIAGLFVFFIMRSM 63 (461)
T ss_pred chHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHH
Confidence 4469999999999999999999999999999988 5899999999999999999888774
No 10
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.08 E-value=7.2e-11 Score=100.23 Aligned_cols=56 Identities=30% Similarity=0.602 Sum_probs=52.8
Q ss_pred ccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhc
Q psy6063 51 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVII 107 (108)
Q Consensus 51 ~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~ 107 (108)
++||+|+.+|+.||++|++||||+|+++|..+ ..+|| +++++|++.|+++++...|
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l-~~aGP~g~li~y~i~G~~vy~vm~s 97 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKAL-SQAGPAGLLIAYLIIGIMVYFVMQS 97 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhh-hccCcHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999988 58999 8999999999999988765
No 11
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.04 E-value=2.1e-10 Score=93.51 Aligned_cols=59 Identities=24% Similarity=0.489 Sum_probs=54.7
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
++++||+|+.++++++++|++||+|+|+++|.++ +.+||+++++|+++++++++.++||
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~-~~aG~~~~l~~~i~~i~~~~~a~~~ 62 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAI-KMAGPSVLLAYIIGGVAAYIIMRAL 62 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999987 5799988999999999999999886
No 12
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.98 E-value=4.5e-10 Score=91.24 Aligned_cols=59 Identities=27% Similarity=0.532 Sum_probs=54.6
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
..+++|+|+.+|++++++|++||+|+|++++..+ +.+||..+++|+++++++++.++||
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~G~~~~i~~~i~~v~~~~~a~~~ 65 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAI-ASAGPAALLAYLLAGLLVVFIMRML 65 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999988 5799988889999999999999886
No 13
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.96 E-value=4.3e-10 Score=94.05 Aligned_cols=57 Identities=26% Similarity=0.554 Sum_probs=52.0
Q ss_pred CccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHh
Q psy6063 48 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV 105 (108)
Q Consensus 48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~a 105 (108)
++++++|.|+.+|++++++|+.||+|+|.++|... +.|||+++++|+++|+++++..
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I-~~AGPSvlLaY~I~G~~~f~iM 63 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAI-AMAGPSVLLAYLIAGIFVFLIM 63 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhh-hhhCcHHHHHHHHHHHHHHHHH
Confidence 35569999999999999999999999999999988 5899999999999999887753
No 14
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.84 E-value=3.3e-09 Score=86.61 Aligned_cols=55 Identities=25% Similarity=0.474 Sum_probs=51.2
Q ss_pred ccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063 53 ARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 53 ~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y 108 (108)
||+|+.+|++++++|++||+|+|.+++.++ +.+|| +++++|+++|+++++.++||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~-~~~Gp~~~i~~~~i~~~~~~~~a~~~ 56 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTAL-ATGGPAGLLIGYAIMGSIIYCVMQSL 56 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHH-HhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999998 57999 57999999999999999886
No 15
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.79 E-value=4.7e-09 Score=85.29 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=50.8
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
.+|+|++++++++++|++||+|+|..|+..+ .+||.++++|+++++.+++.++||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al~~ 57 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAYVY 57 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999864 479999999999999999999986
No 16
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.79 E-value=6.8e-09 Score=84.20 Aligned_cols=59 Identities=32% Similarity=0.631 Sum_probs=52.3
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcC-h-HHHHHHHHHHHHHHHHhhcC
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAG-P-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aG-p-~~llawil~giv~l~~al~y 108 (108)
+++++|++++++++++++|.+||+|+|..++.++. .+| | ..+++|+++++++++.++||
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~-~~G~~~~~~l~~li~~v~~l~~al~~ 63 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAK-AAGTPWLTVLAFVIGGLIVIPQMCVY 63 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999998774 455 4 47899999999999999986
No 17
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.76 E-value=7.5e-09 Score=85.33 Aligned_cols=60 Identities=23% Similarity=0.454 Sum_probs=53.3
Q ss_pred CccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-H-HHHHHHHHHHHHHHHhhcC
Q psy6063 48 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-S-VVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~-~llawil~giv~l~~al~y 108 (108)
++.+++|+++.++++++++|++||+|+|.+++.++ ..+|| + .+++|+++++++++.++||
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~-~~~G~~g~~~~~~ii~~i~~~~~al~~ 97 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVL-KNAGSVGLALIMWAVCGIFSIVGALVY 97 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHH-hhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44679999999999999999999999999999987 46887 3 4689999999999999886
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=98.75 E-value=9.2e-09 Score=83.14 Aligned_cols=55 Identities=25% Similarity=0.449 Sum_probs=50.3
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
.+|+|++++++++++|++||+|+|..|+..+ .+||..+++|+++++++++.++||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~--~~G~~~~~~w~i~~~~~~~~a~~~ 58 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAYAF 58 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998854 479988899999999999999986
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.74 E-value=1e-08 Score=83.29 Aligned_cols=58 Identities=22% Similarity=0.450 Sum_probs=51.3
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
+.+++|+|++++++++++|++||+|+|..++.++ . .||..+++|+++++.+++.++||
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a-~-~g~~~~~~~~i~~~~~l~~al~~ 60 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLA-S-TGGIAIYGWLVTIIGALGLSMVY 60 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458899999999999999999999999999876 3 46667899999999999999886
No 20
>PRK11021 putative transporter; Provisional
Probab=98.72 E-value=1.1e-08 Score=82.29 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=48.6
Q ss_pred cChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 56 LGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 56 L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
++.++.+++.+|+|||+|+|+++|.++ +.+||+.+++|+++++++++.++||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~-~~aG~~~~~~~~i~~~~~~~~al~~ 52 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAA-LVAGNNSLWAWPLLILLIFPIAIVF 52 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHH-HhcCchHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999987 5799988999999999999999986
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.66 E-value=2.3e-08 Score=81.91 Aligned_cols=54 Identities=33% Similarity=0.509 Sum_probs=49.8
Q ss_pred cccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063 54 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 54 R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y 108 (108)
|++++++++++++|++||+|+|..|+..+ +.+|| +.+++|+++++.+++.++||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~-~~ag~~~~l~~w~i~~~~~~~~al~~ 55 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMA-AGAAAGAVLIGWVITGVGMLALAFSF 55 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999987 57899 57899999999999999886
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.65 E-value=2.6e-08 Score=81.76 Aligned_cols=56 Identities=34% Similarity=0.627 Sum_probs=51.2
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y 108 (108)
.+|+++.++++++++|++||+|+|..++.++ ..+|| ..+++|+++++++++.++||
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~-~~~g~~~~~~~wli~~~~~~~~al~~ 61 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLA-SVAGPGAVIIGWIITGVGMLALAFVF 61 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999987 57898 57899999999999999886
No 23
>KOG1287|consensus
Probab=98.58 E-value=1.9e-08 Score=84.77 Aligned_cols=61 Identities=23% Similarity=0.437 Sum_probs=55.6
Q ss_pred CCccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh--HHHHHHHHHHHHHHHHhhcC
Q psy6063 47 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP--SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 47 ~~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp--~~llawil~giv~l~~al~y 108 (108)
.+..+++|+++++..+.+.+|.+||+|||++|..+. +.+|| ..++-|+++|++++..|+||
T Consensus 5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl-~~~gsvg~sL~iWv~~gi~s~~galcy 67 (479)
T KOG1287|consen 5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVL-ANTGSVGLSLIIWVFCGIISIIGALCY 67 (479)
T ss_pred cccccccceeeeecceeEEEEeeEecccccCcHHHH-HcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999999998 57888 46888999999999999998
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=98.47 E-value=1.8e-07 Score=75.13 Aligned_cols=56 Identities=50% Similarity=0.969 Sum_probs=51.4
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
++|+++.++.+++.++.+||+|+|..++... ..+||..+++|+++++++++.++||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~-~~~G~~~~l~~li~~~~~~~~a~~~ 56 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFIALVY 56 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999987 5789988899999999999988875
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.41 E-value=1.3e-07 Score=77.39 Aligned_cols=45 Identities=22% Similarity=0.528 Sum_probs=41.3
Q ss_pred HHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 63 MLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 63 ~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
++++|++||+|+|+++|..+ +.+||+++++|+++|+++++.++||
T Consensus 1 ~~~ig~~IGsGif~~~g~~~-~~aG~~~ll~~~i~gi~~~~~al~~ 45 (446)
T PRK10197 1 MLSIAGVIGASLFVGSSVAI-AEAGPAVLLAYLFAGLLVVMIMRML 45 (446)
T ss_pred CeeecchhHhHHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999988 5799999999999999999999886
No 26
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.33 E-value=4.7e-07 Score=74.41 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=54.7
Q ss_pred CccccccccChhhHHHHhhcce-ecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 48 DAPQLARVLGLIDLTMLGVGAT-LGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 48 ~~~~l~R~L~~~~l~~l~vG~i-IGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
.+++|||+++.++..+++++.+ +++|+|.+++..+ ..+||+++++|+++++.+++.++||
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~-~~~Gp~~~~~~li~~i~~l~~als~ 67 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGY-GFGGPAFFWTWPVVFVGQLLVALNF 67 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999985 9999999999988 5799998999999999999999886
No 27
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.25 E-value=9e-07 Score=71.68 Aligned_cols=58 Identities=26% Similarity=0.220 Sum_probs=50.4
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y 108 (108)
++++||+++.++++++++|.+|| |.|...+..+ ..+|| +.+++|+++++++++.++||
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~-~~~G~~~~~~~~~i~~~~~~~~a~~~ 60 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGL-AQGGWGGFVVATLLVATMYLTFCFSL 60 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHH-HHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55699999999999999999998 8888877766 46899 68899999999999988875
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.08 E-value=2.8e-06 Score=69.65 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=51.1
Q ss_pred CccccccccChhhHHHHhhcce-ecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063 48 DAPQLARVLGLIDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 48 ~~~~l~R~L~~~~l~~l~vG~i-IGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y 108 (108)
.+++++|+++.+++++++++.+ +.+|+|.+.+... ..+|| +++++|+++|+++++.++||
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~Gp~~~i~~~~i~gi~~l~~~~~~ 67 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGL-SSGGAMSIVWGWIIAGAGSICIALSL 67 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhh-hcCCccchhHHHHHHHHHHHHHHHHH
Confidence 3556999999999999999954 2389999888776 47899 78999999999999999875
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.98 E-value=4.6e-06 Score=75.09 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=51.6
Q ss_pred ccccccChhhHHHHh-hcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063 51 QLARVLGLIDLTMLG-VGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 51 ~l~R~L~~~~l~~l~-vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y 108 (108)
.-.+++|.+..+++. ++.|+|+|+|+.++.++. .+|+ ..++.|++++++++++++||
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg-~aG~~~sll~~~la~~vtlltaLS~ 131 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVG-QAGIGLSLLIILLCCCVTTITGLSM 131 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999 999999999999999884 7898 57889999999999999997
No 30
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.67 E-value=2.7e-05 Score=61.37 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=47.4
Q ss_pred ccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 55 VLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 55 ~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
+++.++.+++.++.+||+|++..|+..+ +.+|+..+++++++++++++.+++|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~-~~a~~~~wi~~ll~~~~~~~~~~~~ 54 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVS-QSAGQDGWISIILGGLIIIFLLCLM 54 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHH-hccCCCeeHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999887 5788888899999999988887764
No 31
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00019 Score=57.38 Aligned_cols=60 Identities=38% Similarity=0.695 Sum_probs=49.9
Q ss_pred CCccccccccChhh-HHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 47 SDAPQLARVLGLID-LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 47 ~~~~~l~R~L~~~~-l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
.++.+++|+++.++ +..+.++.++|+|+|..++..+. .+ |...++|+++++++++.++||
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~-~~-~~~~~~~li~~~~~~~~a~~~ 65 (466)
T COG0531 5 MMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAG-LA-PAAILAWLIAGIIILFLALSY 65 (466)
T ss_pred ccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHH-hc-hHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999 99999999999999999998763 44 655556999999998888775
No 32
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.29 E-value=5.2e-05 Score=62.15 Aligned_cols=48 Identities=25% Similarity=0.575 Sum_probs=42.9
Q ss_pred hHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhcC
Q psy6063 60 DLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 60 ~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~y 108 (108)
|++++++|++||+|+|+.++..+ ..+|| +++++|+++++++++.+.||
T Consensus 1 hv~~~~ig~~ig~g~f~~~g~~~-~~~G~~~~~la~li~~i~~~~~~~~~ 49 (478)
T PF00324_consen 1 HVFMISIGGIIGTGLFLGSGFAI-AAAGPGGAPLAYLIAGIIVLLVALSL 49 (478)
T ss_pred CEEEeeHHHHHHHHHHHHHHHHH-HhcccccchhHhHHHHHHHHhhhhhh
Confidence 45678999999999999999987 57999 88999999999999998875
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.21 E-value=0.00025 Score=56.61 Aligned_cols=50 Identities=32% Similarity=0.555 Sum_probs=42.6
Q ss_pred cChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHH-HHHhhcC
Q psy6063 56 LGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVIIL 108 (108)
Q Consensus 56 L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~-l~~al~y 108 (108)
|++++..++++|.++|+|+|..+ .+ ..+||..+++|++++++. ++.+++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~~~ 51 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIALSY 51 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988 34 468999999999999887 7888775
No 34
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.78 E-value=0.0014 Score=54.25 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=41.0
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHH-HHHHhhcC
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVT-SLFSVIIL 108 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv-~l~~al~y 108 (108)
.+|+|+.+++++++++++||.+.. + ... ..+||+.++.|++++++ .++.++||
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~--~-~~~-~~~G~~~i~~~~i~~~~~~l~~al~~ 58 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS--P-RAF-YLMGYSAIPWYILSAILFFIPFALMM 58 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch--H-HHH-HHcChHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999997632 3 223 35899888888888866 46788765
No 35
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=96.64 E-value=0.00072 Score=53.70 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 62 TMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 62 ~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
+++.+|++||+|+|..|+..+ ..+++..++..+++++++++.++||
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l~~ 48 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGLLL 48 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999876 4455555556677777877777765
No 36
>PHA02764 hypothetical protein; Provisional
Probab=95.76 E-value=0.015 Score=48.02 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=43.6
Q ss_pred CccccccccChhhHHHHhhcceecchhhhc-cHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 48 DAPQLARVLGLIDLTMLGVGATLGVGVYVL-AGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~-~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
+...|-|+.+++|.+++.++.+ |.|+-++ +-..+....|+.++++|+++|+++++.++||
T Consensus 6 eSSGLVREvs~lDAF~~Nl~~m-~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~Y 66 (399)
T PHA02764 6 KSSGIIKSFNILDIFSINLLYM-GILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMY 66 (399)
T ss_pred hcCCceeeccHHHHHHHHHHhh-ccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4566999999999999999876 3444222 2222211245578899999999999999997
No 37
>KOG1289|consensus
Probab=95.73 E-value=0.0065 Score=52.42 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=43.3
Q ss_pred CCccccccccChhhHHHHhhcce-ecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhc
Q psy6063 47 SDAPQLARVLGLIDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVII 107 (108)
Q Consensus 47 ~~~~~l~R~L~~~~l~~l~vG~i-IGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~ 107 (108)
.-++++||+++.+....++.+.+ .=.|+-.+-...+ ..+|| .++.+|+++++..+|+++|
T Consensus 41 gYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl-~~gG~~~~vwgwlIa~~~~i~va~s 102 (550)
T KOG1289|consen 41 GYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGL-GSGGPPTLVWGWLIAGFFSICVALS 102 (550)
T ss_pred CCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeecc-ccCChHHHHHHHHHHHHHHHHHHhH
Confidence 34678999999999998888744 1134444333334 24666 8899999999999999875
No 38
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=93.49 E-value=0.16 Score=42.50 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=38.4
Q ss_pred ccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHH
Q psy6063 53 ARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAV 99 (108)
Q Consensus 53 ~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~gi 99 (108)
++.+++++..+.++++.||+|-..+...+. ..+|| ++++-|+.+-+
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI-~~GGPGAiFWMWi~a~~ 62 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAI-AIGGPGAIFWMWISALL 62 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHH-HhhchhHHHHHHHHHHH
Confidence 347999999999999999999999998877 58999 66777774433
No 39
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=91.89 E-value=0.26 Score=40.41 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=34.1
Q ss_pred ccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHh
Q psy6063 55 VLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSV 105 (108)
Q Consensus 55 ~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~a 105 (108)
+-+.+..+++..|+.||+|++..|-... .+|. +.++..+++..+++..+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~--~~Gf~~~~~~l~~~w~~~~~s~ 51 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATA--GAGFLPSLILLLIAWPLMYYSG 51 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999999998754 4775 44444444444444444
No 40
>PRK10483 tryptophan permease; Provisional
Probab=91.35 E-value=0.4 Score=40.10 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=36.9
Q ss_pred ccccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHh
Q psy6063 51 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSV 105 (108)
Q Consensus 51 ~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~a 105 (108)
..|+..+.+...++..|++||+|++-.|-..+ .+|- +.++..+++-+++..++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a--~~GF~~s~~~l~~~W~~M~~ta 59 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMS--GAWFFWSMAALIFTWFCMLHSG 59 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999987654 4664 33333333444444443
No 41
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=90.90 E-value=0.4 Score=39.57 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=39.2
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhhc
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVII 107 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al~ 107 (108)
.++..+.+..+++.+|++||+|++..|-.. ..+|- ..++..++++..+.++.++
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~~~ 59 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSLLL 59 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999999999999998864 35775 4455566666666655543
No 42
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=90.64 E-value=0.79 Score=39.00 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=39.3
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHH
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAV 99 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~gi 99 (108)
-++.+++++..+.++++.||+|-..+...+. ..+|| ++++-|+++-+
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI-~~GGPGAvFWMWi~Al~ 106 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAI-ALGGPGAVFWMWIVALF 106 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHH-HcCCCccHHHHHHHHHH
Confidence 4466889999999999999999999998877 58999 67777875543
No 43
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=89.85 E-value=0.35 Score=39.79 Aligned_cols=50 Identities=14% Similarity=0.252 Sum_probs=37.0
Q ss_pred cccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHH-HHHhhcC
Q psy6063 54 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVIIL 108 (108)
Q Consensus 54 R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~-l~~al~y 108 (108)
|+|+.++++++.+.++++.... +. . ..+||+++++|++++++. ++.++||
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~--~~--~-a~~G~~~~~~~~i~~~~~~ip~al~~ 51 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL--PA--E-AEYGLSAAFYYLFAAIFFLVPVSLVA 51 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc--hH--H-HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999988887654433 32 2 358999999999999876 4688775
No 44
>PRK09664 tryptophan permease TnaB; Provisional
Probab=89.71 E-value=0.59 Score=39.10 Aligned_cols=48 Identities=23% Similarity=0.146 Sum_probs=32.2
Q ss_pred ChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhh
Q psy6063 57 GLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVI 106 (108)
Q Consensus 57 ~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al 106 (108)
+.....++..|++||+|.+-.|-..+ .+|- +..+..++.-+++..+++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a--~~Gf~~s~~ll~~~w~~M~~t~L 58 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLA--GAWFFWGAFILIIAWFSMLHSGL 58 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHH
Confidence 56668999999999999999987643 4664 443444444444444443
No 45
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=89.17 E-value=0.41 Score=37.36 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=38.0
Q ss_pred ccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHh
Q psy6063 55 VLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV 105 (108)
Q Consensus 55 ~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~a 105 (108)
+++.++...+.+..++|+|++..|+..+. .+| ..+++-++++++.+..+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~-~~~-d~Wi~~ll~~~~~l~~~ 49 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAE-QAG-DAWISVLLGGLIGLLLA 49 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC-CcHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999874 565 55566666666555544
No 46
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=85.09 E-value=0.65 Score=38.25 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=26.4
Q ss_pred HHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHH
Q psy6063 61 LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104 (108)
Q Consensus 61 l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~ 104 (108)
.+...+|.+||+|++..|... |+..+++|++++++++..
T Consensus 8 w~~~l~gt~IGaGiL~LP~~a-----g~~G~i~~li~~l~~~pl 46 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQA-----GLGGLWVLVLMAIIAYPL 46 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHH
Confidence 456778999999999999863 232345566666554444
No 47
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=82.74 E-value=1.9 Score=36.29 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=31.7
Q ss_pred cccChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHH
Q psy6063 54 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAI 96 (108)
Q Consensus 54 R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil 96 (108)
..+++++..++.+++.||+|-..+....+ ..+|| ++++-|+.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai-~~GGpGAvFWMWI~ 87 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAI-AIGGPGAVFWMWVT 87 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHH-HhcCCCchHHHHHH
Confidence 45899999999999999999555544445 57999 55655653
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=81.13 E-value=2.9 Score=34.70 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=24.9
Q ss_pred ChhhHHHHhhcceecchhhhccHHhHHhhcCh
Q psy6063 57 GLIDLTMLGVGATLGVGVYVLAGSVARNQAGP 88 (108)
Q Consensus 57 ~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp 88 (108)
+.....++..|+.||+|++..|-... .+|.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~--~~Gf 33 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAA--GVGF 33 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHH--hChH
Confidence 56778899999999999999988754 4776
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=80.43 E-value=2.1 Score=35.92 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=37.1
Q ss_pred ccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHH-HHHHhhcC
Q psy6063 53 ARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVT-SLFSVIIL 108 (108)
Q Consensus 53 ~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv-~l~~al~y 108 (108)
+|+|+.++++++.++.++ +++..|. . +..|++.+.-|++++++ .++.++||
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~-~--a~~G~~~i~~~i~~~l~~~lp~al~~ 54 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT-F--ATSGFHLVFFLLLGGILWFIPVALCA 54 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH-H--HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466999999999999885 5565443 2 25788777778877775 56677764
No 50
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=77.23 E-value=3.2 Score=34.20 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=33.4
Q ss_pred hhcceecchhhhccHHhHHhhcCh---HHHHHHHHHHHHHHHHhhc
Q psy6063 65 GVGATLGVGVYVLAGSVARNQAGP---SVVISFAIAAVTSLFSVII 107 (108)
Q Consensus 65 ~vG~iIGtGiFv~~G~~~~~~aGp---~~llawil~giv~l~~al~ 107 (108)
..+.-+|+|.++-|..+.+ .+|. ..+++|+++|+...+.+++
T Consensus 4 lFamffGAGNlIfPp~lG~-~aG~~~~~a~lgf~ltgV~lpllgl~ 48 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGL-AAGEHVWTAALGFLLTGVGLPLLGLI 48 (378)
T ss_pred HHHHHHhhhHHhhhHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHh
Confidence 3466789999999999874 6775 3688999999988877664
No 51
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=64.92 E-value=9.4 Score=32.43 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHH
Q psy6063 63 MLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFS 104 (108)
Q Consensus 63 ~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~ 104 (108)
....|+.||+|++..|-... .+|. ..++..+++..++...
T Consensus 26 l~l~GTAIGAGmLfLPI~~g--~~Gf~p~lillll~~p~m~~s 66 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAG--FGGLIPILLMLVLAYPIAFYC 66 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHH
Confidence 67789999999999998754 4776 3444444444444443
No 52
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=61.60 E-value=20 Score=23.13 Aligned_cols=32 Identities=38% Similarity=0.476 Sum_probs=25.6
Q ss_pred ccccccccChhhHHHHhhcceecchhhhccHH
Q psy6063 49 APQLARVLGLIDLTMLGVGATLGVGVYVLAGS 80 (108)
Q Consensus 49 ~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~ 80 (108)
+++.=-.++.+++..++++..++.|++.....
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~~~~~~~~~~ 41 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVGVGVYLLLWF 41 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567999999999999999999887654
No 53
>KOG1303|consensus
Probab=58.53 E-value=20 Score=30.19 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=27.0
Q ss_pred ccccccChhhHHHHhhcceecchhhhccHHh
Q psy6063 51 QLARVLGLIDLTMLGVGATLGVGVYVLAGSV 81 (108)
Q Consensus 51 ~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~ 81 (108)
..+|..+.++..+-.++.++|.|+..+|-..
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~ 63 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYAL 63 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHH
Confidence 4577899999999999999999999998544
No 54
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=58.13 E-value=15 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.5
Q ss_pred ccChhhHHHHhhcceecchhhhccHHhHHhhcCh
Q psy6063 55 VLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP 88 (108)
Q Consensus 55 ~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp 88 (108)
+-+.++..+..+..++|+|++..|-... .+|-
T Consensus 2 ~~s~~~~~~~l~~~~iG~G~L~lP~af~--~~G~ 33 (409)
T PF01490_consen 2 KGSWFSAFFNLINSIIGAGILSLPYAFA--QSGW 33 (409)
T ss_pred CccHHHHHHHHHHHHHhHHHHHHHHHHH--Hhhh
Confidence 4577888999999999999999998754 4664
No 55
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=51.22 E-value=23 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=13.9
Q ss_pred hHHHHhhcceecchhhhccHHh
Q psy6063 60 DLTMLGVGATLGVGVYVLAGSV 81 (108)
Q Consensus 60 ~l~~l~vG~iIGtGiFv~~G~~ 81 (108)
.+++++++-|++ |+|+..+.+
T Consensus 17 ~lif~g~~vmy~-gi~f~~~~~ 37 (114)
T PF11023_consen 17 SLIFIGMIVMYI-GIFFKASPI 37 (114)
T ss_pred HHHHHHHHHHhh-hhhhcccHH
Confidence 456677777875 787755543
No 56
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.11 E-value=27 Score=24.68 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=27.6
Q ss_pred cccccccChhhHHH-HhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHH
Q psy6063 50 PQLARVLGLIDLTM-LGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS 101 (108)
Q Consensus 50 ~~l~R~L~~~~l~~-l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~ 101 (108)
++.+.....+.+.. +.-|.++|++|=+..-..+ ...||-++.+++-|+.+
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~a--gTsPwglIv~lllGf~A 87 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFA--GTSPWGLIVFLLLGFGA 87 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 33444455544443 4445566666545444433 46788777777766543
No 57
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=45.09 E-value=19 Score=25.13 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=26.3
Q ss_pred HHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHH
Q psy6063 61 LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104 (108)
Q Consensus 61 l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~ 104 (108)
++.|+-|..+|..-|+..+.+. .+--+.+.+|+++.++.+..
T Consensus 45 L~Gi~~G~~vG~~~fl~~~~~~--~A~nwavgsF~l~s~~~we~ 86 (118)
T PF12597_consen 45 LYGIAGGFGVGGLRFLFTSNPR--KAANWAVGSFFLGSLGSWEY 86 (118)
T ss_pred HHHHHHHHHHHhhhhcccCCCc--cchhhhhHHHHHHHHHHHHH
Confidence 4445555666777777766543 24346777888887776653
No 58
>PLN03074 auxin influx permease; Provisional
Probab=37.16 E-value=93 Score=26.23 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=26.1
Q ss_pred cChhhHHHHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHH
Q psy6063 56 LGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAV 99 (108)
Q Consensus 56 L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~gi 99 (108)
.+..+.++-.+...||+|++..|-... .+|= ..++..++.++
T Consensus 46 ~s~~~~~~~l~~~~vG~GILaLP~Af~--~~G~v~Gii~lv~~~~ 88 (473)
T PLN03074 46 GSVYDAWFSCASNQVAQVLLTLPYSFS--QLGMLSGILFQIFYGL 88 (473)
T ss_pred chHHHHHHHHHHHHHhHHHHhHHHHHH--HccHHHHHHHHHHHHH
Confidence 345555555778888999999988643 5774 22333444443
No 59
>KOG1304|consensus
Probab=32.42 E-value=1.6e+02 Score=25.17 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=24.6
Q ss_pred cccChhhHHHHhhcceecchhhhccHHhHHhhcCh
Q psy6063 54 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP 88 (108)
Q Consensus 54 R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp 88 (108)
...+..+-..--+=+++|+|++-.|... +.+|-
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~AF--k~sG~ 77 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLAF--KNSGL 77 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHHH--Hhcch
Confidence 3466666666667789999999988863 46885
No 60
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=30.18 E-value=1.1e+02 Score=21.33 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=11.0
Q ss_pred hhHHHHhhcceecchhhhccHH
Q psy6063 59 IDLTMLGVGATLGVGVYVLAGS 80 (108)
Q Consensus 59 ~~l~~l~vG~iIGtGiFv~~G~ 80 (108)
|..+++++.-.+..-+++..|.
T Consensus 41 wK~I~la~~Lli~G~~li~~g~ 62 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGL 62 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666654443333444443
No 61
>KOG1305|consensus
Probab=27.63 E-value=1.1e+02 Score=25.68 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=25.3
Q ss_pred cccChhhHHHHhhcceecchhhhccHHhHHhhcC
Q psy6063 54 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAG 87 (108)
Q Consensus 54 R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aG 87 (108)
+..+.+..+.--+.+++|+||+..|-.. ..+|
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~af--k~~G 35 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAF--KTAG 35 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHH--HHhc
Confidence 4456677888888999999999998864 3577
No 62
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=22.85 E-value=1.1e+02 Score=16.69 Aligned_cols=13 Identities=0% Similarity=0.100 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q psy6063 92 ISFAIAAVTSLFS 104 (108)
Q Consensus 92 lawil~giv~l~~ 104 (108)
++|+++-.+++..
T Consensus 4 faWilG~~lA~~~ 16 (30)
T TIGR02106 4 FAWILGTLLACAF 16 (30)
T ss_pred HHHHHHHHHHHHH
Confidence 5677776555443
No 63
>TIGR03050 PS_I_psaK_plant photosystem I reaction center PsaK, plant form. This protein family is based on a model that separates the photosystem I PsaK subunit of chloroplasts from chloroplast PsaG protein and from Cyanobacterial PsaK, both of which show sequence similarity.
Probab=21.70 E-value=1.2e+02 Score=20.32 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=20.7
Q ss_pred cccccccChhhHHH-Hhhcceecchhhhcc
Q psy6063 50 PQLARVLGLIDLTM-LGVGATLGVGVYVLA 78 (108)
Q Consensus 50 ~~l~R~L~~~~l~~-l~vG~iIGtGiFv~~ 78 (108)
......++..++.+ -.+|++||.|+....
T Consensus 48 s~dfagf~~~~~La~~s~GHiiG~g~ilGL 77 (83)
T TIGR03050 48 TGDPAGFTLADTLACGAVGHIMGVGIVLGL 77 (83)
T ss_pred cCCCCCcCHHHHHHHhhHHHHHHHHHHHhh
Confidence 44556777777765 568899999887653
No 64
>PTZ00206 amino acid transporter; Provisional
Probab=21.62 E-value=1.6e+02 Score=24.62 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=22.3
Q ss_pred ChhhHHHHhhcceecchhhhccHHhHHhhcCh
Q psy6063 57 GLIDLTMLGVGATLGVGVYVLAGSVARNQAGP 88 (108)
Q Consensus 57 ~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp 88 (108)
+.....+-.+.++||+|++..|... +.+|-
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af--~~~G~ 90 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAA--NSSGL 90 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHH--HHhhH
Confidence 3456667777899999999998864 35664
No 65
>PHA00727 hypothetical protein
Probab=21.18 E-value=30 Score=27.09 Aligned_cols=40 Identities=35% Similarity=0.411 Sum_probs=26.7
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHH
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVI 92 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~ll 92 (108)
|.|.=+-.++.++.||.+.|.||=+..|... +.|.-..++
T Consensus 206 lakvgsgpd~~mliig~imgigigvaigfgi-ananlthll 245 (278)
T PHA00727 206 LAKVGSGPDLMMLIIGAIMGIGIGVAIGFGI-ANANLTHLL 245 (278)
T ss_pred HHhcCCCCchHHHHHHHHHhcccceeeeecc-ccccHHHHH
Confidence 3444456778888888888888888777665 345443333
No 66
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.84 E-value=1.1e+02 Score=21.98 Aligned_cols=7 Identities=14% Similarity=0.472 Sum_probs=2.9
Q ss_pred ecchhhh
Q psy6063 70 LGVGVYV 76 (108)
Q Consensus 70 IGtGiFv 76 (108)
|.+||..
T Consensus 19 i~~gI~~ 25 (191)
T PF04156_consen 19 IASGIAA 25 (191)
T ss_pred HHHHHHH
Confidence 3444443
No 67
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=20.59 E-value=1.3e+02 Score=16.08 Aligned_cols=13 Identities=0% Similarity=0.087 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q psy6063 92 ISFAIAAVTSLFS 104 (108)
Q Consensus 92 lawil~giv~l~~ 104 (108)
++|+++-.+++..
T Consensus 4 faWilG~~lA~~~ 16 (28)
T PF08173_consen 4 FAWILGVLLACAF 16 (28)
T ss_pred HHHHHHHHHHHHH
Confidence 5677766555443
Done!