Query psy6063
Match_columns 108
No_of_seqs 122 out of 1311
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 16:43:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.7 7.4E-09 2.5E-13 80.9 4.2 57 50-108 4-60 (445)
2 3gia_A Uncharacterized protein 98.6 1.5E-08 5.1E-13 79.3 3.2 56 52-108 4-59 (444)
3 4djk_A Probable glutamate/gamm 97.3 0.0002 6.9E-09 56.7 4.0 56 48-108 5-61 (511)
4 2jln_A MHP1; hydantoin, transp 26.7 1.5E+02 0.0052 23.6 6.2 30 52-81 23-52 (501)
5 2w2e_A AQY1, aquaporin, aquapo 16.9 2.2E+02 0.0076 21.3 5.0 21 59-79 42-62 (279)
6 2zvk_U DNA polymerase ETA, pro 10.8 87 0.003 15.7 0.8 15 1-15 9-23 (26)
7 4aw6_A CAAX prenyl protease 1 10.6 2E+02 0.0068 23.4 3.3 43 63-106 170-213 (482)
8 2lx0_A Membrane fusion protein 10.6 1.1E+02 0.0037 15.8 1.1 14 86-99 10-23 (32)
9 2a65_A Leutaa, Na(+):neurotran 9.0 3.2E+02 0.011 22.3 4.0 43 58-100 11-53 (519)
10 3dh4_A Sodium/glucose cotransp 8.0 4E+02 0.014 21.2 4.1 34 53-88 19-53 (530)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.72 E-value=7.4e-09 Score=80.89 Aligned_cols=57 Identities=25% Similarity=0.457 Sum_probs=49.6
Q ss_pred cccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 50 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 50 ~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
.+.+|+++.++++++++|.+||+|+|..++..+ .+||..+++|+++++++++.++||
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~ 60 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVY 60 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999998754 589988899999999999999876
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.62 E-value=1.5e-08 Score=79.30 Aligned_cols=56 Identities=20% Similarity=0.374 Sum_probs=51.9
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHHHHHhhcC
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVIIL 108 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~l~~al~y 108 (108)
.||+++.++++++++|.+||+|+|..++..+ ..+||+++++|+++++++++.++||
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~~~ 59 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSY 59 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999877 5799999999999999999998875
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.26 E-value=0.0002 Score=56.72 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=37.6
Q ss_pred CccccccccChhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHHH-HHHhhcC
Q psy6063 48 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVIIL 108 (108)
Q Consensus 48 ~~~~l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv~-l~~al~y 108 (108)
++++++|+++.++++++++|.++| ++..+. . ..+||+.++.|++++++. ++.++||
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~ 61 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCA 61 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355689999999999999999996 454444 2 368998888888887765 4577764
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=26.69 E-value=1.5e+02 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=23.4
Q ss_pred cccccChhhHHHHhhcceecchhhhccHHh
Q psy6063 52 LARVLGLIDLTMLGVGATLGVGVYVLAGSV 81 (108)
Q Consensus 52 l~R~L~~~~l~~l~vG~iIGtGiFv~~G~~ 81 (108)
-+|+.+.++...+-+|..+..+-+..-+..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~ 52 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQM 52 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999988888888654443
No 5
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=16.94 E-value=2.2e+02 Score=21.29 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=13.6
Q ss_pred hhHHHHhhcceecchhhhccH
Q psy6063 59 IDLTMLGVGATLGVGVYVLAG 79 (108)
Q Consensus 59 ~~l~~l~vG~iIGtGiFv~~G 79 (108)
++.+--.++-.+||-+|+..|
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g 62 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSA 62 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445677778888777544
No 6
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=10.84 E-value=87 Score=15.71 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=10.3
Q ss_pred ChhHHHHHHHhhccc
Q psy6063 1 MSRLRNLYEALSRKK 15 (108)
Q Consensus 1 ~~~~~~~~~~~~r~~ 15 (108)
|+.|..||+.|.+..
T Consensus 9 ~~TLesFFK~L~~~~ 23 (26)
T 2zvk_U 9 MQTLESFFKPLTHXX 23 (26)
T ss_pred cccHHHHhccCCccc
Confidence 356778888877643
No 7
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=10.63 E-value=2e+02 Score=23.39 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=24.8
Q ss_pred HHhhcceecchhhhccHHhHHhhcCh-HHHHHHHHHHHHHHHHhh
Q psy6063 63 MLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVI 106 (108)
Q Consensus 63 ~l~vG~iIGtGiFv~~G~~~~~~aGp-~~llawil~giv~l~~al 106 (108)
.+.++.+||.-+....=.+. +.+|+ +-+.+|++..++.++..+
T Consensus 170 ~~~l~~vi~~pl~~~~~~ii-~~~g~~~wl~~w~~~~~~~l~~~~ 213 (482)
T 4aw6_A 170 KFVVTQCILLPVSSLLLYII-KIGGDYFFIYAWLFTLVVSLVLVT 213 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHcCchhHHHHHHHHHHHHHHHHH
Confidence 34555555554443333344 46777 667788887776665543
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=10.62 E-value=1.1e+02 Score=15.80 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=5.7
Q ss_pred cChHHHHHHHHHHH
Q psy6063 86 AGPSVVISFAIAAV 99 (108)
Q Consensus 86 aGp~~llawil~gi 99 (108)
+|-.+++.|+.-|+
T Consensus 10 aglvalltflafgf 23 (32)
T 2lx0_A 10 AGLVALLTFLAFGF 23 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444443
No 9
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=8.95 E-value=3.2e+02 Score=22.28 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=29.8
Q ss_pred hhhHHHHhhcceecchhhhccHHhHHhhcChHHHHHHHHHHHH
Q psy6063 58 LIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVT 100 (108)
Q Consensus 58 ~~~l~~l~vG~iIGtGiFv~~G~~~~~~aGp~~llawil~giv 100 (108)
..+.++-++|..||-|-+.-=...+.+++|-+-++.|++.-++
T Consensus 11 r~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~ 53 (519)
T 2a65_A 11 RLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLL 53 (519)
T ss_dssp HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3567778889999999888644444467776666667655443
No 10
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=7.99 E-value=4e+02 Score=21.22 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=26.4
Q ss_pred ccccChhhHHHHhhcceecchhhhc-cHHhHHhhcCh
Q psy6063 53 ARVLGLIDLTMLGVGATLGVGVYVL-AGSVARNQAGP 88 (108)
Q Consensus 53 ~R~L~~~~l~~l~vG~iIGtGiFv~-~G~~~~~~aGp 88 (108)
.|+++.+-..+-.+++.+++..|++ +|.+. ..|-
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y--~~G~ 53 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGY--SIGL 53 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHH--HTCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCh
Confidence 5889999888888899999999996 45443 4565
Done!