Query psy6063
Match_columns 108
No_of_seqs 122 out of 1311
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 16:43:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6063.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6063hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 9.2 1.5E+02 0.011 21.5 4.0 41 58-99 7-48 (509)
2 d2ezwa1 a.31.1.1 (A:12-61) cAM 6.4 95 0.0069 16.6 1.1 15 1-15 34-48 (50)
3 d1x63a2 g.39.1.3 (A:45-76) Fou 6.4 32 0.0024 16.7 -0.8 12 68-79 7-18 (32)
4 d1xmeb2 f.17.2.1 (B:3-36) Bact 5.4 1.8E+02 0.013 13.8 1.8 10 92-101 17-26 (34)
5 d3cx5i1 f.23.14.1 (I:4-58) Sub 5.1 1.5E+02 0.011 15.8 1.6 12 6-17 2-13 (55)
6 d1ppjw_ f.23.14.1 (W:) Subunit 4.4 1.5E+02 0.011 16.2 1.2 12 5-16 7-18 (62)
7 d1jb0k_ f.30.1.1 (K:) Photosys 4.0 94 0.0069 17.1 0.0 26 51-76 30-56 (58)
8 d2bcgg1 c.3.1.3 (G:5-301) Guan 3.9 1.1E+02 0.0083 17.7 0.4 7 69-75 10-16 (297)
9 d1kifa1 c.4.1.2 (A:1-194,A:288 3.7 1.5E+02 0.011 17.9 0.8 10 68-77 4-13 (246)
10 d1nvma1 a.5.7.1 (A:291-341) 4- 3.6 2.4E+02 0.017 14.8 1.6 20 5-24 20-39 (51)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=9.19 E-value=1.5e+02 Score=21.54 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=28.7
Q ss_pred hhhHHHHhhcceecchhhhc-cHHhHHhhcChHHHHHHHHHHH
Q psy6063 58 LIDLTMLGVGATLGVGVYVL-AGSVARNQAGPSVVISFAIAAV 99 (108)
Q Consensus 58 ~~~l~~l~vG~iIGtGiFv~-~G~~~~~~aGp~~llawil~gi 99 (108)
..+.++-.+|..||-|-+.- |-... +++|-+-++.|++.-+
T Consensus 7 ~~~fila~~g~avGlGNiWrFPyl~~-~nGGgaFlipY~~~l~ 48 (509)
T d2a65a1 7 RLGLILAMAGNAVGLGNFLRFPVQAA-ENGGGAFMIPYIIAFL 48 (509)
T ss_dssp HHHHHHHHHHHHSSHHHHTHHHHHHH-HTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccHHHhhhHHHH-hcCCchhHHHHHHHHH
Confidence 45677788899999998885 55544 6777666666765543
No 2
>d2ezwa1 a.31.1.1 (A:12-61) cAMP-dependent protein kinase type I-alpha regulatory subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.37 E-value=95 Score=16.55 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=11.1
Q ss_pred ChhHHHHHHHhhccc
Q psy6063 1 MSRLRNLYEALSRKK 15 (108)
Q Consensus 1 ~~~~~~~~~~~~r~~ 15 (108)
|+++|+-|++|-|.+
T Consensus 34 ~~FLreyFekLe~e~ 48 (50)
T d2ezwa1 34 MAFLREYFEKLEKEE 48 (50)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhh
Confidence 356888888887754
No 3
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.35 E-value=32 Score=16.69 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=8.4
Q ss_pred ceecchhhhccH
Q psy6063 68 ATLGVGVYVLAG 79 (108)
Q Consensus 68 ~iIGtGiFv~~G 79 (108)
.+||+|-|+--|
T Consensus 7 q~igsgsffpkg 18 (32)
T d1x63a2 7 QVIGTGSFFPKG 18 (32)
T ss_dssp CCCTTSCEEEET
T ss_pred hhcccccccCCC
Confidence 467888887544
No 4
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.42 E-value=1.8e+02 Score=13.80 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy6063 92 ISFAIAAVTS 101 (108)
Q Consensus 92 lawil~giv~ 101 (108)
++|-++-+++
T Consensus 17 lafslamlfv 26 (34)
T d1xmeb2 17 LAFSLAMLFV 26 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3343443333
No 5
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.09 E-value=1.5e+02 Score=15.82 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=7.0
Q ss_pred HHHHHhhccccC
Q psy6063 6 NLYEALSRKKID 17 (108)
Q Consensus 6 ~~~~~~~r~~~~ 17 (108)
.+|+.|+||-++
T Consensus 2 tiY~~lfrRnSv 13 (55)
T d3cx5i1 2 SLYKTFFKRNAV 13 (55)
T ss_dssp HHHHHHHTTSCC
T ss_pred hHHHHHHHhhhH
Confidence 356666666544
No 6
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.44 E-value=1.5e+02 Score=16.24 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=6.8
Q ss_pred HHHHHHhhcccc
Q psy6063 5 RNLYEALSRKKI 16 (108)
Q Consensus 5 ~~~~~~~~r~~~ 16 (108)
+.+|+.|+||-+
T Consensus 7 ~~lYn~lfrRnS 18 (62)
T d1ppjw_ 7 ARLYSLLFRRTS 18 (62)
T ss_dssp HHHHHHHTSSHH
T ss_pred HHHHHHHHHhhh
Confidence 446666666543
No 7
>d1jb0k_ f.30.1.1 (K:) Photosystem I reaction center subunit X, PsaK {Synechococcus elongatus [TaxId: 32046]}
Probab=4.00 E-value=94 Score=17.05 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=12.8
Q ss_pred ccccccChhhHHH-Hhhcceecchhhh
Q psy6063 51 QLARVLGLIDLTM-LGVGATLGVGVYV 76 (108)
Q Consensus 51 ~l~R~L~~~~l~~-l~vG~iIGtGiFv 76 (108)
++-..++...+.+ ..+|+++|+|...
T Consensus 30 ~~fgg~g~~~lLat~s~GHilG~G~IL 56 (58)
T d1jb0k_ 30 ALFEGFGLPELLATTSFGHLLAAGVVS 56 (58)
T ss_dssp ------CCTTGGGHHHHHHHHHHHHTT
T ss_pred hhccCCCHHHHHHHhhHHHHHhhhhhh
Confidence 4555566555443 5677888877654
No 8
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.89 E-value=1.1e+02 Score=17.74 Aligned_cols=7 Identities=43% Similarity=0.876 Sum_probs=3.8
Q ss_pred eecchhh
Q psy6063 69 TLGVGVY 75 (108)
Q Consensus 69 iIGtGiF 75 (108)
+||+|+=
T Consensus 10 ViGaG~~ 16 (297)
T d2bcgg1 10 VLGTGIT 16 (297)
T ss_dssp EECCSHH
T ss_pred EECcCHH
Confidence 4555554
No 9
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.66 E-value=1.5e+02 Score=17.95 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=7.2
Q ss_pred ceecchhhhc
Q psy6063 68 ATLGVGVYVL 77 (108)
Q Consensus 68 ~iIGtGiFv~ 77 (108)
.+||+|+.-+
T Consensus 4 ~VIGaGi~Gl 13 (246)
T d1kifa1 4 VVIGAGVIGL 13 (246)
T ss_dssp EEECCSHHHH
T ss_pred EEECchHHHH
Confidence 4788888764
No 10
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=3.59 E-value=2.4e+02 Score=14.84 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=15.3
Q ss_pred HHHHHHhhccccCCCCCchh
Q psy6063 5 RNLYEALSRKKIDVGDDDVS 24 (108)
Q Consensus 5 ~~~~~~~~r~~~~~~~~~~~ 24 (108)
|.++..|=||+.+.+-.||-
T Consensus 20 rdil~ElGrR~~VgGQEDmI 39 (51)
T d1nvma1 20 LDILVELGHRRMVGGQEDMI 39 (51)
T ss_dssp HHHHHHHHHHTCCTTCTHHH
T ss_pred HHHHHHHhhcccccchHHHH
Confidence 46677788999998877764
Done!