RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6063
         (108 letters)



>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 108

 Score = 26.3 bits (58), Expect = 0.56
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 58  LIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV 105
              L     G T+ V   V  G+  R+QA   VVI+   +     F+V
Sbjct: 20  TRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTV 67


>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli
           [TaxId: 562]}
          Length = 114

 Score = 25.2 bits (55), Expect = 1.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 60  DLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV 105
           D+     G T+ V V+V+ GS  R QA   VVI+     + S F+V
Sbjct: 15  DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTV 60


>d2fb1a1 a.4.5.68 (A:150-225) Hypothetical protein BT0354,
          C-terminal domain {Bacteroides thetaiotaomicron [TaxId:
          818]}
          Length = 76

 Score = 24.2 bits (53), Expect = 2.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 1  MSRLRNLYEALSRKKID 17
          +S+L++LYEA+  + +D
Sbjct: 13 LSQLQSLYEAIYGEPMD 29


>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 23.7 bits (51), Expect = 6.4
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 9/34 (26%)

Query: 25  IAEGKNPAGGADG---------VGKLPLERASDA 49
           +A+G +P+ G D          V KL    AS+ 
Sbjct: 664 LADGVSPSRGCDVSGPTAACNSVSKLDHFIASNG 697


>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296
           {Legionella pneumophila [TaxId: 446]}
          Length = 271

 Score = 23.3 bits (50), Expect = 7.3
 Identities = 9/50 (18%), Positives = 19/50 (38%)

Query: 36  DGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQ 85
           +G+  + L+R +        + +I    L    +   G    A +  R+Q
Sbjct: 55  EGINPVWLDRENLPSLFLEYISVIKQINLNSTLSYYPGSPYFAINQLRSQ 104


>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta
           {Acidaminococcus fermentans [TaxId: 905]}
          Length = 260

 Score = 23.4 bits (50), Expect = 8.2
 Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 2/60 (3%)

Query: 49  APQLARVLGLIDLTMLGVGATLGVGVYVLAGSV--ARNQAGPSVVISFAIAAVTSLFSVI 106
              +A+ +   D  ++     +      +  SV   R  A    +          +   +
Sbjct: 35  GASVAKRVYAPDCHIIVESGLMDCSPVEVPRSVGDLRFMAHCGCIWPNVRFVGFEINEYL 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.372 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 368,196
Number of extensions: 15645
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 14
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)