Query psy6064
Match_columns 568
No_of_seqs 252 out of 2710
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 16:44:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 9.6E-61 2.1E-65 518.8 47.0 495 36-565 4-557 (557)
2 PRK15049 L-asparagine permease 100.0 1.8E-50 3.9E-55 434.5 44.5 416 80-560 23-470 (499)
3 PRK11387 S-methylmethionine tr 100.0 3.2E-49 6.9E-54 423.8 42.4 418 81-565 10-462 (471)
4 COG0833 LysP Amino acid transp 100.0 2E-49 4.4E-54 406.1 35.7 387 82-536 41-464 (541)
5 PRK11357 frlA putative fructos 100.0 5E-48 1.1E-52 412.3 40.2 408 80-566 3-442 (445)
6 PRK10249 phenylalanine transpo 100.0 1.5E-47 3.2E-52 409.0 42.3 386 79-535 15-427 (458)
7 PRK11049 D-alanine/D-serine/gl 100.0 9.6E-48 2.1E-52 411.9 41.0 419 80-567 15-468 (469)
8 COG1113 AnsP Gamma-aminobutyra 100.0 1.6E-48 3.4E-53 391.7 31.3 420 78-564 6-455 (462)
9 PRK10746 putative transport pr 100.0 2E-47 4.3E-52 407.7 41.8 417 79-565 4-455 (461)
10 PRK10238 aromatic amino acid t 100.0 6.5E-47 1.4E-51 403.8 42.2 411 80-560 7-448 (456)
11 PRK10836 lysine transporter; P 100.0 8.6E-47 1.9E-51 406.6 43.5 391 78-536 8-435 (489)
12 PRK10580 proY putative proline 100.0 1.1E-46 2.4E-51 402.9 42.1 417 80-564 4-452 (457)
13 PRK10655 potE putrescine trans 100.0 6.1E-47 1.3E-51 403.3 39.1 400 82-567 3-436 (438)
14 KOG1287|consensus 100.0 1.2E-47 2.7E-52 392.0 31.0 410 77-563 4-444 (479)
15 TIGR00908 2A0305 ethanolamine 100.0 1.7E-46 3.7E-51 400.4 40.2 409 80-565 2-436 (442)
16 TIGR00909 2A0306 amino acid tr 100.0 7.7E-46 1.7E-50 394.2 41.7 395 83-558 1-429 (429)
17 PRK10644 arginine:agmatin anti 100.0 5.7E-46 1.2E-50 396.3 40.7 401 81-564 4-434 (445)
18 TIGR01773 GABAperm gamma-amino 100.0 2.1E-45 4.5E-50 392.9 41.3 414 80-561 7-451 (452)
19 TIGR00911 2A0308 L-type amino 100.0 3.9E-45 8.5E-50 395.4 41.4 402 79-557 36-468 (501)
20 TIGR00913 2A0310 amino acid pe 100.0 5.3E-45 1.1E-49 392.7 41.9 386 84-535 1-427 (478)
21 PRK10435 cadB lysine/cadaverin 100.0 1.5E-44 3.2E-49 383.8 38.6 395 82-566 2-431 (435)
22 KOG1289|consensus 100.0 1.7E-45 3.7E-50 376.2 29.4 397 67-486 30-470 (550)
23 TIGR00905 2A0302 transporter, 100.0 3.4E-44 7.4E-49 385.1 40.0 405 82-563 4-440 (473)
24 KOG1286|consensus 100.0 3.7E-45 8.1E-50 388.6 32.0 357 79-442 24-425 (554)
25 PRK10197 gamma-aminobutyrate t 100.0 5.5E-44 1.2E-48 380.2 39.9 394 95-556 2-425 (446)
26 TIGR00907 2A0304 amino acid pe 100.0 5.1E-43 1.1E-47 377.5 38.6 361 76-440 3-409 (482)
27 PRK11021 putative transporter; 100.0 1.2E-42 2.7E-47 366.9 40.3 380 87-566 1-409 (410)
28 TIGR00930 2a30 K-Cl cotranspor 100.0 2.9E-42 6.4E-47 389.5 42.2 416 80-564 71-542 (953)
29 TIGR03810 arg_ornith_anti argi 100.0 4.1E-42 8.9E-47 368.5 40.2 401 85-562 1-434 (468)
30 TIGR03428 ureacarb_perm permea 100.0 3.7E-41 8.1E-46 361.8 38.8 392 75-489 3-438 (475)
31 TIGR03813 put_Glu_GABA_T putat 100.0 5.6E-37 1.2E-41 329.6 38.8 342 85-442 1-387 (474)
32 COG0531 PotE Amino acid transp 100.0 6.6E-36 1.4E-40 321.6 39.8 353 78-442 5-391 (466)
33 TIGR00910 2A0307_GadC glutamat 100.0 1.5E-35 3.2E-40 319.4 39.9 344 84-442 3-390 (507)
34 PF13520 AA_permease_2: Amino 100.0 3.6E-36 7.8E-41 319.9 32.2 342 87-442 1-377 (426)
35 PF00324 AA_permease: Amino ac 100.0 5.1E-39 1.1E-43 346.0 10.4 349 92-442 2-394 (478)
36 PRK15238 inner membrane transp 100.0 2.5E-34 5.4E-39 310.4 36.6 349 82-440 4-422 (496)
37 KOG2082|consensus 99.9 4E-21 8.7E-26 199.9 25.9 225 266-562 416-648 (1075)
38 TIGR00837 araaP aromatic amino 99.9 6.2E-21 1.4E-25 199.7 26.8 319 93-437 3-353 (381)
39 KOG1288|consensus 99.9 7.4E-20 1.6E-24 189.3 26.6 249 185-441 199-472 (945)
40 KOG2083|consensus 99.8 3.6E-17 7.8E-22 168.6 21.5 406 81-562 24-469 (643)
41 TIGR00796 livcs branched-chain 99.7 6.1E-15 1.3E-19 151.2 30.8 317 97-442 5-356 (378)
42 TIGR00912 2A0309 spore germina 99.7 6.7E-15 1.4E-19 152.9 30.8 270 85-371 1-294 (359)
43 PF03222 Trp_Tyr_perm: Tryptop 99.4 1.2E-09 2.7E-14 113.9 33.2 330 85-442 1-367 (394)
44 PHA02764 hypothetical protein; 99.4 8E-11 1.7E-15 113.1 21.2 305 78-441 5-333 (399)
45 TIGR00814 stp serine transport 99.3 2.9E-09 6.3E-14 111.0 27.5 260 93-375 9-313 (397)
46 PF13906 AA_permease_C: C-term 99.2 1.3E-11 2.8E-16 87.3 5.5 51 513-563 1-51 (51)
47 PRK10483 tryptophan permease; 99.2 2.5E-08 5.4E-13 103.4 31.9 275 82-374 6-314 (414)
48 PRK09664 tryptophan permease T 99.2 2.7E-08 5.8E-13 103.1 30.8 270 88-372 10-313 (415)
49 PRK15132 tyrosine transporter 99.1 1.4E-07 3E-12 98.3 31.6 320 88-440 4-362 (403)
50 COG0814 SdaC Amino acid permea 99.0 2.4E-06 5.2E-11 90.0 33.9 263 82-358 4-300 (415)
51 PF03845 Spore_permease: Spore 98.9 4.5E-07 9.8E-12 92.6 25.2 264 86-372 1-291 (320)
52 PRK13629 threonine/serine tran 98.7 3E-05 6.6E-10 80.8 29.4 187 182-375 137-348 (443)
53 PRK11375 allantoin permease; P 98.6 0.001 2.2E-08 71.7 38.2 309 78-410 18-365 (484)
54 KOG1303|consensus 98.4 0.0003 6.5E-09 74.0 29.0 329 79-438 30-399 (437)
55 PF01235 Na_Ala_symp: Sodium:a 98.4 4.6E-05 1E-09 79.0 22.0 283 83-373 15-338 (416)
56 KOG1304|consensus 98.4 0.00022 4.7E-09 74.1 25.7 165 259-436 240-410 (449)
57 COG1457 CodB Purine-cytosine p 98.2 0.011 2.3E-07 62.0 35.3 171 180-370 127-298 (442)
58 PLN03074 auxin influx permease 98.2 0.0029 6.3E-08 67.9 31.2 63 258-321 231-293 (473)
59 COG1953 FUI1 Cytosine/uracil/t 98.1 0.022 4.7E-07 59.9 37.2 345 77-443 31-418 (497)
60 PTZ00206 amino acid transporte 98.1 0.0058 1.3E-07 65.7 30.1 62 261-322 257-319 (467)
61 TIGR00835 agcS amino acid carr 98.1 0.0014 3E-08 68.5 24.0 280 85-373 45-365 (425)
62 COG1115 AlsT Na+/alanine sympo 98.0 0.0049 1.1E-07 63.7 25.9 286 82-373 58-382 (452)
63 PRK11017 codB cytosine permeas 97.9 0.044 9.5E-07 57.9 32.2 38 187-224 124-161 (404)
64 COG3949 Uncharacterized membra 97.8 0.029 6.4E-07 55.6 26.2 89 275-366 194-282 (349)
65 PRK09442 panF sodium/panthothe 97.8 0.052 1.1E-06 58.8 31.0 96 275-375 252-350 (483)
66 PF05525 Branch_AA_trans: Bran 97.5 0.067 1.5E-06 56.1 25.8 221 183-431 118-349 (427)
67 PF01490 Aa_trans: Transmembra 97.3 8.9E-05 1.9E-09 78.4 1.8 177 258-442 190-376 (409)
68 PRK10484 putative transporter; 97.1 0.59 1.3E-05 51.2 33.2 82 286-368 270-354 (523)
69 TIGR02119 panF sodium/pantothe 97.1 0.55 1.2E-05 50.7 31.3 92 275-368 251-345 (471)
70 TIGR00800 ncs1 NCS1 nucleoside 97.1 0.55 1.2E-05 50.2 33.4 50 81-131 8-59 (442)
71 TIGR00813 sss transporter, SSS 97.1 0.55 1.2E-05 49.6 27.6 82 286-368 229-321 (407)
72 PF02705 K_trans: K+ potassium 97.0 0.27 5.9E-06 52.8 23.8 239 177-434 126-371 (534)
73 PRK15433 branched-chain amino 96.8 0.87 1.9E-05 48.0 26.4 221 185-429 124-350 (439)
74 COG0733 Na+-dependent transpor 96.5 1.4 2.9E-05 46.2 26.4 168 188-372 149-330 (439)
75 COG1114 BrnQ Branched-chain am 96.3 1.6 3.4E-05 45.2 30.0 220 185-428 122-348 (431)
76 PF00474 SSF: Sodium:solute sy 96.3 0.067 1.5E-06 56.5 13.8 83 291-376 232-324 (406)
77 KOG1305|consensus 96.2 0.72 1.6E-05 48.5 20.5 63 260-322 194-257 (411)
78 COG0591 PutP Na+/proline sympo 96.0 3 6.4E-05 45.3 27.3 43 327-369 311-353 (493)
79 PF01566 Nramp: Natural resist 95.9 2.6 5.7E-05 43.6 25.7 46 328-373 239-285 (358)
80 PLN00148 potassium transporter 95.9 0.23 4.9E-06 55.4 15.4 230 182-427 196-430 (785)
81 PLN00149 potassium transporter 95.8 1.9 4.2E-05 48.3 22.4 228 184-429 199-436 (779)
82 TIGR00794 kup potassium uptake 95.8 0.33 7.1E-06 53.7 16.2 236 181-432 166-406 (688)
83 PRK00701 manganese transport p 95.7 3.6 7.9E-05 43.8 29.9 38 329-366 295-332 (439)
84 COG1914 MntH Mn2+ and Fe2+ tra 95.7 3.4 7.4E-05 43.4 30.2 41 329-369 270-313 (416)
85 PRK12488 acetate permease; Pro 95.6 4.6 9.9E-05 44.5 29.4 34 83-116 65-98 (549)
86 PLN00151 potassium transporter 95.6 0.74 1.6E-05 51.6 17.9 228 182-429 273-509 (852)
87 PLN00150 potassium ion transpo 95.5 0.18 3.9E-06 56.1 13.1 228 182-429 213-449 (779)
88 PF02028 BCCT: BCCT family tra 95.4 4.9 0.00011 43.3 25.6 89 343-440 391-484 (485)
89 PRK10745 trkD potassium transp 95.3 1.8 4E-05 47.2 19.5 237 177-432 137-380 (622)
90 PRK15419 proline:sodium sympor 95.0 6.9 0.00015 42.6 31.5 42 327-368 311-352 (502)
91 TIGR02711 symport_actP cation/ 94.8 7.9 0.00017 42.7 28.3 80 286-366 287-379 (549)
92 TIGR02121 Na_Pro_sym sodium/pr 94.1 10 0.00023 41.0 31.7 42 327-368 304-345 (487)
93 PRK09395 actP acetate permease 93.7 14 0.0003 40.8 29.3 36 83-119 67-102 (551)
94 PF02133 Transp_cyt_pur: Perme 93.0 4.1 8.8E-05 43.5 16.6 50 82-132 4-55 (440)
95 TIGR02358 thia_cytX probable h 91.2 22 0.00047 37.3 30.6 155 191-372 120-275 (386)
96 TIGR03648 Na_symport_lg probab 91.0 29 0.00062 38.3 27.7 30 84-113 31-60 (552)
97 COG3158 Kup K+ transporter [In 87.8 21 0.00046 38.5 15.4 247 175-440 140-394 (627)
98 PRK09950 putative transporter; 86.7 52 0.0011 35.7 24.0 95 342-441 400-499 (506)
99 COG1292 BetT Choline-glycine b 84.6 64 0.0014 34.9 22.6 93 342-442 403-499 (537)
100 KOG2466|consensus 80.5 85 0.0019 33.5 19.6 289 78-384 47-381 (572)
101 COG4147 DhlC Predicted symport 79.3 93 0.002 33.2 22.4 213 186-410 158-411 (529)
102 KOG4303|consensus 74.9 34 0.00074 34.7 10.6 113 185-314 243-355 (524)
103 PF00209 SNF: Sodium:neurotran 74.2 1.4E+02 0.003 32.7 23.1 105 198-312 195-301 (523)
104 PRK03356 L-carnitine/gamma-but 73.1 1.4E+02 0.0031 32.3 19.0 94 342-440 403-500 (504)
105 PTZ00206 amino acid transporte 72.7 65 0.0014 34.7 13.4 56 328-383 121-176 (467)
106 KOG3659|consensus 68.2 1.9E+02 0.0042 31.8 26.8 122 185-315 256-378 (629)
107 PRK09928 choline transport pro 67.9 2.1E+02 0.0047 32.2 22.7 96 342-441 407-505 (679)
108 TIGR01197 nramp NRAMP (natural 59.2 2.3E+02 0.0051 29.6 26.4 43 330-372 282-324 (390)
109 TIGR00842 bcct choline/carniti 59.1 2.5E+02 0.0055 30.0 20.9 92 342-438 354-450 (453)
110 KOG3660|consensus 57.5 3.2E+02 0.0069 30.7 22.3 52 88-139 39-94 (629)
111 PF14256 YwiC: YwiC-like prote 53.4 1.5E+02 0.0032 25.7 9.5 45 397-441 8-52 (129)
112 TIGR02230 ATPase_gene1 F0F1-AT 53.0 49 0.0011 27.2 6.0 50 81-132 36-87 (100)
113 KOG1286|consensus 51.2 31 0.00067 37.9 6.1 48 517-564 503-553 (554)
114 PF11998 DUF3493: Protein of u 48.0 1.3E+02 0.0028 23.3 7.3 42 277-318 4-45 (75)
115 PF14667 Polysacc_synt_C: Poly 36.6 2.7E+02 0.0059 23.8 9.2 23 388-410 27-49 (146)
116 PF02009 Rifin_STEVOR: Rifin/s 34.4 23 0.0005 35.5 1.7 22 546-567 267-288 (299)
117 COG4145 PanF Na+/panthothenate 32.3 6E+02 0.013 26.5 25.9 101 267-368 242-344 (473)
118 PRK00968 tetrahydromethanopter 31.2 57 0.0012 30.5 3.5 33 283-315 204-237 (240)
119 PF03845 Spore_permease: Spore 30.2 5.7E+02 0.012 25.6 17.1 108 299-423 36-143 (320)
120 COG4325 Predicted membrane pro 29.5 5.4E+02 0.012 26.8 10.2 48 361-410 96-143 (464)
121 COG3086 RseC Positive regulato 26.3 71 0.0015 28.1 3.0 48 517-564 80-130 (150)
122 PF05297 Herpes_LMP1: Herpesvi 25.8 23 0.00049 34.6 0.0 19 384-402 13-31 (381)
123 PTZ00046 rifin; Provisional 24.7 48 0.0011 33.9 2.1 22 546-567 326-347 (358)
124 TIGR01477 RIFIN variant surfac 24.0 49 0.0011 33.8 1.9 22 546-567 321-342 (353)
125 TIGR01695 mviN integral membra 24.0 8.9E+02 0.019 25.7 17.1 47 388-434 375-421 (502)
126 COG4060 MtrD Tetrahydromethano 23.4 96 0.0021 28.0 3.4 32 283-314 194-226 (230)
127 PF08693 SKG6: Transmembrane a 22.0 68 0.0015 21.5 1.7 14 548-561 26-39 (40)
128 PF11174 DUF2970: Protein of u 20.5 2.3E+02 0.005 20.6 4.3 26 264-289 3-28 (56)
129 PF04246 RseC_MucC: Positive r 20.2 1E+02 0.0022 26.8 3.0 18 519-536 75-92 (135)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=9.6e-61 Score=518.78 Aligned_cols=495 Identities=39% Similarity=0.715 Sum_probs=388.3
Q ss_pred HHHHHHhhhcccCCCCCccccccCCCCCCCCCCCCCCccccCCCccccccccChhHHHHHhhcccccchhhhhhhHhHhh
Q psy6064 36 RNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARN 115 (568)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~ 115 (568)
.+.++++.|||+.++ ++.++++++|+++++|++++++|.++|+|+|..++.++.+
T Consensus 4 ~~~~~~~~r~k~~~~-------------------------~~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~ 58 (557)
T TIGR00906 4 LTFARCLIRRKIVDL-------------------------DSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARN 58 (557)
T ss_pred HHHHHHHhccCCccc-------------------------ccccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHh
Confidence 456778899998711 0122346999999999999999999999999999998767
Q ss_pred hcChhHHHHHHHHHHHHHHhhhcc-------cchh----h-------HHHHHHHHHHHHHHhhhhHHH-----HHHHHhc
Q psy6064 116 QAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V-------LNSDVKAISNQIDSLMGNAYQ-----KSMESLL 172 (568)
Q Consensus 116 ~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y-------~~~~~~~w~~~l~~~~~~~~~-----~~~~~~~ 172 (568)
.+||+++++|+++++.+++.+++| |.-+ | ..+|..||..++.+..+.+.. .|+...+
T Consensus 59 ~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll 138 (557)
T TIGR00906 59 DSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELL 138 (557)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999 5222 2 789999999998887654332 2222221
Q ss_pred c-----c-------cCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccc
Q psy6064 173 P-----I-------KSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRR 240 (568)
Q Consensus 173 ~-----~-------~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 240 (568)
. + ..++...+..+++++++++++.+|.+|+|.++++|++++.+|++.++++++.++...+.+||....
T Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~ 218 (557)
T TIGR00906 139 NKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITE 218 (557)
T ss_pred hhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccc
Confidence 1 0 111122345677888888899999999999999999999999999999999998877666664321
Q ss_pred cCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy6064 241 EAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVP 320 (568)
Q Consensus 241 ~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p 320 (568)
. .+.+++.|.|+.+++.++..++|+|.|||.+++++||+|||+|++|||++.++.+++++|++.++++...+|
T Consensus 219 ~-------~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp 291 (557)
T TIGR00906 219 E-------KGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMP 291 (557)
T ss_pred c-------ccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1 122346788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHH
Q psy6064 321 YYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSG 400 (568)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~ 400 (568)
+++.+.++|+..+++..+.++...++.++++++.+++.++.+++.+|++|+|||||.+|++|+|+|||+++|++|+++.+
T Consensus 292 ~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~ 371 (557)
T TIGR00906 292 YYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSG 371 (557)
T ss_pred HHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHH
Confidence 98888888999999888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCcccccchhcccccCCCCCcccccccchhh
Q psy6064 401 VITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTN 480 (568)
Q Consensus 401 ~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (568)
+++.++.++.+++.+.++.+++.++.|.+++++++++|++++.+.+ .+.+.+|+.. ++..++.....+....-. ..-
T Consensus 372 iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~ 448 (557)
T TIGR00906 372 AIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYG-QAKDTDEKDT-LDSWVPFTSKSESQSEGF-SLR 448 (557)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-cccccccccc-ccccccccccccccccch-hHH
Confidence 9999999888999999999999999999999999999988754322 1111111110 000000000000000000 000
Q ss_pred hhHHHHhhhhcc---------cccccceEE-------------EEe--cCCCCCCCccccccchhHHHHHHHHHHHHhcC
Q psy6064 481 VTDKSQLNIQRD---------KNQSSNQQQ-------------YLS--GQNTGRLKFKVPWVPLIPCLSMFMNIYLMINL 536 (568)
Q Consensus 481 ~~~~~~~~~~~~---------~~~~~~~~~-------------~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~ 536 (568)
.+++..+...|+ ..+||.+++ .++ ||.+.+|+||+|++|++|+++++.|+++|.++
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l 528 (557)
T TIGR00906 449 TLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQL 528 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcC
Confidence 001111111111 123332222 123 66666999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy6064 537 DVSTWVRFLVWLVLGMVVYFTYSIDHSKQ 565 (568)
Q Consensus 537 ~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 565 (568)
++.+|.++.+|+++|+++|+.|++||+++
T Consensus 529 ~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 529 DADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 99999999999999999999999999974
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=1.8e-50 Score=434.54 Aligned_cols=416 Identities=18% Similarity=0.286 Sum_probs=327.9
Q ss_pred ccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h----
Q psy6064 80 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V---- 144 (568)
Q Consensus 80 ~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y---- 144 (568)
++++||+|+.++++++++|+++|+|+|..++... ..+||..+++|+++++++++.+.++ |.-+ |
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~-~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARL-QMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3469999999999999999999999999999866 7889988899999999999999998 5222 2
Q ss_pred ---HHHHHHHHHHHHHHhhhhHHHHHHHHhc-cccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q psy6064 145 ---LNSDVKAISNQIDSLMGNAYQKSMESLL-PIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTV 220 (568)
Q Consensus 145 ---~~~~~~~w~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l 220 (568)
..+|..||.+++.+...........+.. .....+...+.+.++.+++++++.+|++|+|.++++|+++..+|++.+
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l 181 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAI 181 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998865433222111111 111112223455678888889999999999999999999999999888
Q ss_pred HHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHH
Q psy6064 221 AIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILS 300 (568)
Q Consensus 221 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s 300 (568)
+++++.++......+........+.... +.+++.|+|+.+++.++..++|+|.|+|.+++++||+|||+|++|||+..+
T Consensus 182 ~~~ii~~i~~~~~~~~~~~~~~~f~~~~-~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~ 260 (499)
T PRK15049 182 VTFLVVGTVFLGSGQPLDGNTTGFHLIT-DNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSV 260 (499)
T ss_pred HHHHHHHHHHHhCCCCCCCCCccccccc-CCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 8877776543211111100001111111 224567888888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccc
Q psy6064 301 LLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLY 379 (568)
Q Consensus 301 ~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP 379 (568)
+..+.++|++...++...+|+++... ++|+.++++..+.+++..++++.++++.+++.|+.+++.||++|+|||||.+|
T Consensus 261 ~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP 340 (499)
T PRK15049 261 IWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAP 340 (499)
T ss_pred HHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 99999999999999999999987753 57999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCcc
Q psy6064 380 ERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEV 453 (568)
Q Consensus 380 ~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~ 453 (568)
++|+|+| |+++|++|++++.+++++..++. .|+.+++++++..+++|.+++++.+++|++.++
T Consensus 341 ~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~---------- 409 (499)
T PRK15049 341 SFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKE---------- 409 (499)
T ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------
Confidence 9999999 78999999999988866543322 389999999999999999999999999876541
Q ss_pred cccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHHHH
Q psy6064 454 DFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLM 533 (568)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 533 (568)
+++.++|||.|.+|+.++++++.+++++
T Consensus 410 ----------------------------------------------------~~~~~~pf~~~~~p~~~~~~l~~~~~~~ 437 (499)
T PRK15049 410 ----------------------------------------------------GKAADVSFKLPGAPFTSWLTLLFLLSVL 437 (499)
T ss_pred ----------------------------------------------------cCCCCCCCcccCccHHHHHHHHHHHHHH
Confidence 1135689999999999999988877664
Q ss_pred hcC----C--HHHHHHHHHHHHHHHHHhhhccc
Q psy6064 534 INL----D--VSTWVRFLVWLVLGMVVYFTYSI 560 (568)
Q Consensus 534 ~~~----~--~~~~~~~~~~~~~g~~~y~~~~~ 560 (568)
..+ + .........+.++..+.|+.+++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (499)
T PRK15049 438 VLMAFDYPNGTYTIAALPIIGILLVIGWFGVRK 470 (499)
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332 1 22334444556666666766443
No 3
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=3.2e-49 Score=423.80 Aligned_cols=418 Identities=17% Similarity=0.262 Sum_probs=329.9
Q ss_pred cccccccChhHHHHHhhcccccchhhhhhhHhHhhhcCh-hHHHHHHHHHHHHHHhhhcc-------cchh----h----
Q psy6064 81 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVVKN-------PNLR----V---- 144 (568)
Q Consensus 81 ~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp-~~~~~~li~~v~~~~~a~~~-------P~~~----Y---- 144 (568)
+++||+|+.++++++++|.++|+|+|..++... +.+|| +.+++|+++++++++.+++| |+-+ |
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~-~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYII-STTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 469999999999999999999999999999966 66787 58999999999999999998 5222 3
Q ss_pred ---HHHHHHHHHHHHHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q psy6064 145 ---LNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVA 221 (568)
Q Consensus 145 ---~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~ 221 (568)
..+|..||.+++++....+......... ........+.+...++++++++.+|++|+|..+++|+++..+|++.++
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~ 167 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFC-MQYWFPQVPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTIL 167 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999877654432222211 110011223345566667788999999999999999999999999888
Q ss_pred HHHhhhccccc---C-CCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHH
Q psy6064 222 IIVFSGLFRLN---P-ANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAI 297 (568)
Q Consensus 222 ~~~i~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai 297 (568)
.+++.++.... . .+.+ . ...+.+. +.+++.|++..+++.++..++|+|.|+|.+++++||+|||+|++|||+
T Consensus 168 ~~ii~g~~~~~~~~~~~~~~-~-~~~~~~~--~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi 243 (471)
T PRK11387 168 AFIVLGGAAIFGFIPMQDGS-P-APGLRNL--TAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAI 243 (471)
T ss_pred HHHHHHHHHHHcCCCCCCCC-C-CCccccc--CCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHH
Confidence 77776654211 0 0000 0 0111111 112355667677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcC-CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcC
Q psy6064 298 ILSLLIVFVCYFSIAVVITMIVPYYEQN-ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDG 376 (568)
Q Consensus 298 ~~s~~~~~v~y~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg 376 (568)
+.++.++.++|++..+++..+.|+++.. +++|+.++++..+++++..++++.++++.+++.++.+++.||++|+|||||
T Consensus 244 ~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg 323 (471)
T PRK11387 244 RTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEG 323 (471)
T ss_pred HHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC
Confidence 9999999999999999999999987765 467999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccC
Q psy6064 377 LLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCD 450 (568)
Q Consensus 377 ~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~ 450 (568)
.+|++|+|+| |+++|++|++++.+++++..+.. .++.+.++.++..++.|++++++.+++|+++++..
T Consensus 324 ~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~----- 397 (471)
T PRK11387 324 TLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDG----- 397 (471)
T ss_pred CcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 9999999999 67999999999877665443322 25678889999999999999999999998876210
Q ss_pred CcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHH
Q psy6064 451 SEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNI 530 (568)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 530 (568)
.+..+||||+|+.|+.|.++++.+.
T Consensus 398 -------------------------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~ 422 (471)
T PRK11387 398 -------------------------------------------------------KALSELAYRAPWYPLTPILGFVLCL 422 (471)
T ss_pred -------------------------------------------------------CCCCCCCccCCCccHHHHHHHHHHH
Confidence 0135689999999999999999988
Q ss_pred HHHhcCCHH-----HHHHHHHHHHHHHHHhhhcccccccc
Q psy6064 531 YLMINLDVS-----TWVRFLVWLVLGMVVYFTYSIDHSKQ 565 (568)
Q Consensus 531 ~l~~~~~~~-----~~~~~~~~~~~g~~~y~~~~~~~~~~ 565 (568)
+++...... .......++++++++|..++|++++.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T PRK11387 423 LACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRLKRNM 462 (471)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 876643222 23455667888899998887776653
No 4
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-49 Score=406.09 Aligned_cols=387 Identities=20% Similarity=0.304 Sum_probs=330.2
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------cc---hh-h-----
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN-------PN---LR-V----- 144 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~-------P~---~~-Y----- 144 (568)
++||+|+.+|+.++++|+.||+|+|+..|. +...|||+ ++++|++.|+..++++.+. |. +. |
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~-~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGK-ALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecch-hhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 799999999999999999999999999999 44899996 8999999999999999988 51 22 3
Q ss_pred --HHHHHHHHHHHHHHhhhhHHHHHHHHhccccCCCCC-cchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q psy6064 145 --LNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLS-SYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVA 221 (568)
Q Consensus 145 --~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~ 221 (568)
..||+.||.+|++|++..+..- +.+.+.++.-.+. .+.+.+..++.+++..+|.+|+|..+..+.++..+|++.++
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El-~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii 198 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLEL-TAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTII 198 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHH-HHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHH
Confidence 8999999999999999766543 2222212111112 36778999999999999999999999999999999999999
Q ss_pred HHHhhhcccc--cCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064 222 IIVFSGLFRL--NPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299 (568)
Q Consensus 222 ~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~ 299 (568)
.+++.+++.. ...+ + .....+...+ .+..++|+.+++..+..+.|+|.|.|.+...++|.|||+|++|||+..
T Consensus 199 ~Fii~gii~~~Gg~~~-~---~~ig~~yw~~-pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~ 273 (541)
T COG0833 199 GFIILGIIIICGGGPT-H---GYIGFNYWHD-PGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQ 273 (541)
T ss_pred HHHHHHHHHhcCCCCC-C---CCcceeeecC-CCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHH
Confidence 9998887642 1111 1 1111111122 335677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcC---------CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6064 300 SLLIVFVCYFSIAVVITMIVPYYEQN---------ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILY 370 (568)
Q Consensus 300 s~~~~~v~y~l~~~~~~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~ 370 (568)
....+.++|++..+.+...+|+++.. ..+|++.++++.|.+.+..+++++++.+++++.|++++++||++|
T Consensus 274 vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~ 353 (541)
T COG0833 274 VFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLY 353 (541)
T ss_pred HHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 99999999999999999999998732 356999999999999999999999999999999999999999999
Q ss_pred HHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcc
Q psy6064 371 AMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEV 444 (568)
Q Consensus 371 a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~ 444 (568)
+||+||..||+|+|+| |+|+|++|++++.+++++..+.. .|++|.++++++.++.++.++++.+++|+....+
T Consensus 354 sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~Q 432 (541)
T COG0833 354 SLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQ 432 (541)
T ss_pred HHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999 78999999999999998866655 2899999999999999999999999999876532
Q ss_pred cccccCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHH
Q psy6064 445 VVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCL 524 (568)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 524 (568)
+++ ..+.|||.|++|+.|++
T Consensus 433 G~s------------------------------------------------------------~~~L~yks~~~p~g~~~ 452 (541)
T COG0833 433 GRS------------------------------------------------------------LDELPYKSPFGPYGPIY 452 (541)
T ss_pred CCC------------------------------------------------------------hhhcCccCCCccHHHHH
Confidence 221 45789999999999999
Q ss_pred HHHHHHHHHhcC
Q psy6064 525 SMFMNIYLMINL 536 (568)
Q Consensus 525 ~~~~~~~l~~~~ 536 (568)
+++.|..+++..
T Consensus 453 ~~~~~~li~i~q 464 (541)
T COG0833 453 GLILCILILIGQ 464 (541)
T ss_pred HHHHHHHHHHHc
Confidence 999999987763
No 5
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=5e-48 Score=412.32 Aligned_cols=408 Identities=18% Similarity=0.307 Sum_probs=326.7
Q ss_pred ccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------cchh----h---
Q psy6064 80 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN-------PNLR----V--- 144 (568)
Q Consensus 80 ~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~-------P~~~----Y--- 144 (568)
++++||++|+++.+++++|.++|+|+|..++.+....|||. .+++|+++++++++.+++| |+-+ |
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 35799999999999999999999999999998775566665 7999999999999999998 5222 2
Q ss_pred ----HHHHHHHHHHHHH-HhhhhH-----HHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q psy6064 145 ----LNSDVKAISNQID-SLMGNA-----YQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTF 214 (568)
Q Consensus 145 ----~~~~~~~w~~~l~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~ 214 (568)
..++..+|..++. .....+ ...|.... .++.......++.+++++++.+|.+|+|..+++|++++.
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~----~~~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~ 158 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFL----TPIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQTLITI 158 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7889999976543 222111 11222111 111111223566677778889999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchh
Q psy6064 215 ANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIP 294 (568)
Q Consensus 215 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP 294 (568)
+|++.++++++.++...+.++++..... . .+. .+ .+.+++.++..++|+|.|||.+++++||+|||+|++|
T Consensus 159 ~~~~~l~~~ii~g~~~~~~~~~~~~~~~-~----~~~---~g-~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP 229 (445)
T PRK11357 159 AKIIPFTIVIGLGIFWFKAENFAAPTTT-A----IGA---TG-SFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMP 229 (445)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCcc-c----ccc---cc-hHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccch
Confidence 9999888887777654444444322110 0 000 01 1456888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q psy6064 295 LAIILSLLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRL--GWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYA 371 (568)
Q Consensus 295 ~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~--~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a 371 (568)
||+..++.++.++|++.++++....|.+++.. +.|+.++++.. .+++...++.+.++++.+++.++.+.+.+|++|+
T Consensus 230 ~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a 309 (445)
T PRK11357 230 RALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYA 309 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999998888887654 56888887764 4556667777888889999999999999999999
Q ss_pred HHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCC
Q psy6064 372 MSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDS 451 (568)
Q Consensus 372 ~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~ 451 (568)
|||||.+|++|+|+|||+|+|++|+++++++++++.+..+++.+.++.+....+.|.+...+.+++|+++
T Consensus 310 ~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~---------- 379 (445)
T PRK11357 310 MAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD---------- 379 (445)
T ss_pred HHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC----------
Confidence 9999999999999999999999999999999999888889999999999999999999999999888664
Q ss_pred cccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHH
Q psy6064 452 EVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIY 531 (568)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 531 (568)
+.+||||+|..|+.|+++++.+++
T Consensus 380 --------------------------------------------------------~~~~~~k~p~~~~~~~~~~~~~~~ 403 (445)
T PRK11357 380 --------------------------------------------------------DYKPLWRTPAFGLMTTLAIASSLI 403 (445)
T ss_pred --------------------------------------------------------CCCCCcccCCchHHHHHHHHHHHH
Confidence 356889999999999999999988
Q ss_pred HHhc----CCHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy6064 532 LMIN----LDVSTWVRFLVWLVLGMVVYFTYSIDHSKQK 566 (568)
Q Consensus 532 l~~~----~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 566 (568)
++.. .+...+....+++++|+++|+.+++|+++.+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 442 (445)
T PRK11357 404 LVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQLN 442 (445)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhhhhh
Confidence 8643 2445566677889999999998888877643
No 6
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.5e-47 Score=409.02 Aligned_cols=386 Identities=20% Similarity=0.312 Sum_probs=313.5
Q ss_pred CccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h---
Q psy6064 79 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V--- 144 (568)
Q Consensus 79 ~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y--- 144 (568)
+++++||+|+.+|+.++++|+++|+|+|..++... +.+||+.+++|+++++++++.++++ |.-+ |
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~-~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAI-QMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 33479999999999999999999999999999965 6789999999999999999999999 5211 2
Q ss_pred ----HHHHHHHHHHHHHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q psy6064 145 ----LNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTV 220 (568)
Q Consensus 145 ----~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l 220 (568)
..++..||.+++.+...........+.. ........+.+.++.+++++++.+|++|+|..+++|.+++.+|++.+
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i 172 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIY-MQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAI 172 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcCcHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence 7899999999998765433221111111 11111122345677888888999999999999999999999999887
Q ss_pred HHHHhhhcccc--cCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHH
Q psy6064 221 AIIVFSGLFRL--NPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAII 298 (568)
Q Consensus 221 ~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~ 298 (568)
+.+++.++... ...+......+.+ ..+++.|.|+.+++.++...+|+|.|+|.+++++||+|||+|++|||++
T Consensus 173 ~~~i~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~ 247 (458)
T PRK10249 173 IGMIGFGLWLLFSGHGGEKASIDNLW-----RYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVN 247 (458)
T ss_pred HHHHHHHHHHHHcCCCCCCCChhhcc-----CCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHH
Confidence 77776665421 1111000011111 1123457788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCc
Q psy6064 299 LSLLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGL 377 (568)
Q Consensus 299 ~s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~ 377 (568)
.++..+.++|++..+++...+|+++... ++|+.+++++.+++++..++.+.++++.+++.++.+++.||++|+|||||.
T Consensus 248 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~ 327 (458)
T PRK10249 248 QVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGN 327 (458)
T ss_pred HHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999887653 479999999988888899999999999999999999999999999999999
Q ss_pred cchhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCC
Q psy6064 378 LYERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDS 451 (568)
Q Consensus 378 lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~ 451 (568)
+|++|+|+| |+++|++|++++++++.++.++. .|+.+.++++...+++|.+++++.+++|+++++
T Consensus 328 lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~-------- 398 (458)
T PRK10249 328 APKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRR-------- 398 (458)
T ss_pred cCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 999999999 77999999999999988765553 488899999999999999999999999875431
Q ss_pred cccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHH
Q psy6064 452 EVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIY 531 (568)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 531 (568)
++.++|||.|++|+.++++++.+.+
T Consensus 399 -------------------------------------------------------~~~~~p~~~~~~p~~~~~~l~~~~~ 423 (458)
T PRK10249 399 -------------------------------------------------------QGRETQFKALLYPFGNYLCIAFLGM 423 (458)
T ss_pred -------------------------------------------------------cCCCCCccCCCccHHHHHHHHHHHH
Confidence 1356899999999999998888777
Q ss_pred HHhc
Q psy6064 532 LMIN 535 (568)
Q Consensus 532 l~~~ 535 (568)
++..
T Consensus 424 ~~v~ 427 (458)
T PRK10249 424 ILLL 427 (458)
T ss_pred HHHH
Confidence 6543
No 7
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=9.6e-48 Score=411.90 Aligned_cols=419 Identities=16% Similarity=0.258 Sum_probs=326.1
Q ss_pred ccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cch----hh----
Q psy6064 80 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNL----RV---- 144 (568)
Q Consensus 80 ~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~----~Y---- 144 (568)
++++||+++.++++++++|.+||+|+|..+|... +.+||+.+++|++++++.++.++++ |.+ .|
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~-~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTI-SLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHH-hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 4569999999999999999999999999999966 6789988999999999999999988 311 12
Q ss_pred ---HHHHHHHHHHHHHHhhhhHHH-HHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q psy6064 145 ---LNSDVKAISNQIDSLMGNAYQ-KSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTV 220 (568)
Q Consensus 145 ---~~~~~~~w~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l 220 (568)
..+|..||.+++.+....... ...........+ ....+.++.+++++++.+|++|+|..+++|++++.+|++.+
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p--~~~~~~~~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l 171 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP--DLSDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAI 171 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999886443222 111111111111 12344566777888899999999999999999999999999
Q ss_pred HHHHhhhcccccCCCCcccc--cCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHH
Q psy6064 221 AIIVFSGLFRLNPANWTIRR--EAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAII 298 (568)
Q Consensus 221 ~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~ 298 (568)
+.+++.++...... ++... ...+.+.. +.+++.|+|+.+++.++...+|+|.|+|.+++++||+|||+|++|||+.
T Consensus 172 ~~~ii~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~ 249 (469)
T PRK11049 172 VALIVVGLVMVAMH-FQSPTGVEASFAHLW-NDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAIN 249 (469)
T ss_pred HHHHHHHHHHHHcC-CCCCCCCCCcccccC-CCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHH
Confidence 98888877643211 10000 00111111 2234567888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCc
Q psy6064 299 LSLLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGL 377 (568)
Q Consensus 299 ~s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~ 377 (568)
.+++.+.++|++..+++....|+++... ++|+.+.++..+++++..++.+.++++.+++.++.+++.||++|+|||||.
T Consensus 250 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~ 329 (469)
T PRK11049 250 SIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGV 329 (469)
T ss_pred HHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8899999999999999988888888754 479999888888888999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCccchHHHHHHHHHHHHH---HHH-----hcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccccccc
Q psy6064 378 LYERLSYVSSRTQTPLLSTALSGVITAVM---SAV-----FKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETC 449 (568)
Q Consensus 378 lP~~f~~v~~r~~~P~~Ail~~~~i~~~~---~~~-----~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~ 449 (568)
+|++|+|+| |+|+|++|+++++++..+. ... ..++.+.+++++...+.|.++.++.+++|+++|+
T Consensus 330 lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~------ 402 (469)
T PRK11049 330 APKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPH------ 402 (469)
T ss_pred CCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------
Confidence 999999999 5599999999988765531 112 1378889999999999999999999999998873
Q ss_pred CCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHH
Q psy6064 450 DSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMN 529 (568)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 529 (568)
.+.++|||.|++++.++++++.+
T Consensus 403 ---------------------------------------------------------~~~~~pf~~p~~~~~~~~~~~~~ 425 (469)
T PRK11049 403 ---------------------------------------------------------LHEKSIYKMPLGKLMCWVCMAFF 425 (469)
T ss_pred ---------------------------------------------------------cCCCCCccCcCcchHHHHHHHHH
Confidence 02347899999999898887776
Q ss_pred HHHHhc--CC---HHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy6064 530 IYLMIN--LD---VSTWVRFLVWLVLGMVVYFTYSIDHSKQKA 567 (568)
Q Consensus 530 ~~l~~~--~~---~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 567 (568)
.+.+.. .+ ...+.....|+++..++|+.++||+..+-+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (469)
T PRK11049 426 AFVLVLLTLEDDTRQALIVTPLWFIALGLGYLFIGKKRAAELR 468 (469)
T ss_pred HHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHHcccchhhhc
Confidence 555332 22 123455556666556666666666555444
No 8
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-48 Score=391.67 Aligned_cols=420 Identities=18% Similarity=0.307 Sum_probs=345.0
Q ss_pred CCccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cc---hh----
Q psy6064 78 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PN---LR---- 143 (568)
Q Consensus 78 ~~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~---~~---- 143 (568)
++++++||.|+.+|..++++|+.||+|+|...+... +.+||+++++++++|++.++.+-.+ |+ +.
T Consensus 6 ~~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I-~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~ 84 (462)
T COG1113 6 NEEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAI-AMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYAR 84 (462)
T ss_pred ccchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhh-hhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 455679999999999999999999999999999854 8899999999999999999888777 42 22
Q ss_pred -h---HHHHHHHHHHHHHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q psy6064 144 -V---LNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT 219 (568)
Q Consensus 144 -Y---~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~ 219 (568)
| .+++..||.||+.|++..... .+......+.-+++.+.|+.+++++++...+|+.++|..++++.++..+|+..
T Consensus 85 ~~lG~~Agf~tgW~YW~~wv~v~~ae-~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~a 163 (462)
T COG1113 85 KYLGPWAGFLTGWTYWFFWVLVGIAE-LTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAA 163 (462)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 799999999999998843322 22222222222334467899999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064 220 VAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299 (568)
Q Consensus 220 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~ 299 (568)
++.+++.|+...-.. +........-+...+++++.|+|+.+++.++..++|+|.|.|.+...++|+|||+|++|||+-.
T Consensus 164 Ii~~Iv~G~~ll~~g-~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~ 242 (462)
T COG1113 164 IIAFIVVGIVLLFGG-FGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINS 242 (462)
T ss_pred HHHHHHHHHHHHhhc-cCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhh
Confidence 999999887643210 0000000011112355789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCcc
Q psy6064 300 SLLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL 378 (568)
Q Consensus 300 s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~l 378 (568)
......++|+.....++...|+++..+ ++|++..++..|-+....++++.++.+.+++.|+.+++.+|++|++|+||..
T Consensus 243 V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~A 322 (462)
T COG1113 243 VIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDA 322 (462)
T ss_pred hhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcc
Confidence 999999999999999999999998765 5799999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCc
Q psy6064 379 YERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSE 452 (568)
Q Consensus 379 P~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~ 452 (568)
|+.|+|++ |+|+|++|++++.++.++..++. .|+.+.+.++...+..|+++.+|.+++||++++
T Consensus 323 Pk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~--------- 392 (462)
T COG1113 323 PKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPA--------- 392 (462)
T ss_pred cHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---------
Confidence 99999999 78999999999988877765554 389999999999999999999999999996542
Q ss_pred ccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHHH
Q psy6064 453 VDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYL 532 (568)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l 532 (568)
+..+.+||+|+.|+...+.++.-..+
T Consensus 393 ------------------------------------------------------~~~~~~fkm~~~p~~~~l~l~fl~~v 418 (462)
T COG1113 393 ------------------------------------------------------EGKKLKFKMPLYPFTNYLTLAFLAFV 418 (462)
T ss_pred ------------------------------------------------------cccCcccccccccHHHHHHHHHHHHH
Confidence 25677899999999888876665554
Q ss_pred HhcC-----CHHHHHHHHHHHHHHHHHhhhccccccc
Q psy6064 533 MINL-----DVSTWVRFLVWLVLGMVVYFTYSIDHSK 564 (568)
Q Consensus 533 ~~~~-----~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 564 (568)
+..+ .........+|+++-.+.|..+++|+++
T Consensus 419 lv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~~~ 455 (462)
T COG1113 419 LVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKKAR 455 (462)
T ss_pred HHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3321 2234555667777777777666655444
No 9
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=2e-47 Score=407.73 Aligned_cols=417 Identities=19% Similarity=0.272 Sum_probs=331.9
Q ss_pred CccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h---
Q psy6064 79 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V--- 144 (568)
Q Consensus 79 ~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y--- 144 (568)
.++++||+|+.+|+.++++|++||+|+|..++... ..+||+++++|++++++.++.++++ |.-+ |
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l-~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTL-KWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 34579999999999999999999999999999855 7799999999999999999999888 5211 2
Q ss_pred ----HHHHHHHHHHHHHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q psy6064 145 ----LNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTV 220 (568)
Q Consensus 145 ----~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l 220 (568)
..++..||.+++.+...........+.. ...-++..+.+.+..+++++++.+|++|+|..+++|.+++.+|+..+
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~-l~~~~p~~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i 161 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVY-VQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTI 161 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998866433331111111 01001123445677778888899999999999999999999999888
Q ss_pred HHHHhhhccc---ccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHH
Q psy6064 221 AIIVFSGLFR---LNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAI 297 (568)
Q Consensus 221 ~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai 297 (568)
+++++.++.. ...++.+ . .-+.+.. +++++.|+|+.++..++..+.|+|.|+|.+++++||+|||+|++|||+
T Consensus 162 ~~~ii~~~~~~~~~~~~~~~-~--~~~~~~~-~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai 237 (461)
T PRK10746 162 IVMIVIGLGVIFFGFGNGGQ-S--IGFSNLT-EHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAV 237 (461)
T ss_pred HHHHHHHHHHHHhCCCCCCC-C--Ccccccc-CCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 7777766532 1111111 0 0111111 123456778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcC
Q psy6064 298 ILSLLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDG 376 (568)
Q Consensus 298 ~~s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg 376 (568)
..++..+.++|++...++...+|+++... ++|+.+++++.+.+.+..++++.++++.+++.|+.+++.||++|+|||||
T Consensus 238 ~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g 317 (461)
T PRK10746 238 GKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNR 317 (461)
T ss_pred HHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999998764 56999999999888888899999999999999999999999999999999
Q ss_pred ccchhhhccCCCCccchHHHHHHHHHHHHHH---HHh-----cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccc
Q psy6064 377 LLYERLSYVSSRTQTPLLSTALSGVITAVMS---AVF-----KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVET 448 (568)
Q Consensus 377 ~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~---~~~-----~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~ 448 (568)
.+|++|+|+| |+|+|++|++++.+..++.. +.. .++.+.+++++..++.|.+++++.+++||++|+
T Consensus 318 ~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~----- 391 (461)
T PRK10746 318 QLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKA----- 391 (461)
T ss_pred CcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 9999999999 78999999998865543321 111 378899999999999999999999999998862
Q ss_pred cCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHH
Q psy6064 449 CDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFM 528 (568)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 528 (568)
+..++|||.|+.|+.+.++++.
T Consensus 392 ----------------------------------------------------------~~~~~~~~~~~~p~~~~~~~~~ 413 (461)
T PRK10746 392 ----------------------------------------------------------AIASHPFRSILFPWANYLTMAF 413 (461)
T ss_pred ----------------------------------------------------------cccCCCCcCCCccHHHHHHHHH
Confidence 1357899999999999998888
Q ss_pred HHHHHhcC--C---HHHHHHHHHHHHHHHHHhhhcccccccc
Q psy6064 529 NIYLMINL--D---VSTWVRFLVWLVLGMVVYFTYSIDHSKQ 565 (568)
Q Consensus 529 ~~~l~~~~--~---~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 565 (568)
++.++... . .........+++++.+.|+.|++.+|.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 455 (461)
T PRK10746 414 LICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGK 455 (461)
T ss_pred HHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 87774442 1 2455556677888888898887765543
No 10
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=6.5e-47 Score=403.80 Aligned_cols=411 Identities=18% Similarity=0.287 Sum_probs=325.1
Q ss_pred ccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h----
Q psy6064 80 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V---- 144 (568)
Q Consensus 80 ~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y---- 144 (568)
++++||+|+.+|+.++++|+++|+|+|..++... +.+||+++++|++++++.++.++++ |.-+ |
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVI-QSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3479999999999999999999999999999966 6789999999999999999999998 5222 2
Q ss_pred ---HHHHHHHHHHHHHHhhhhHHHHHHHHhc-cccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q psy6064 145 ---LNSDVKAISNQIDSLMGNAYQKSMESLL-PIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTV 220 (568)
Q Consensus 145 ---~~~~~~~w~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l 220 (568)
..++..||.+++.+.............. .... ++.+.+.++.+++++++.+|++|+|..+++|++++.+|++.+
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i 163 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWY--PEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAV 163 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999877655443222211 1111 123455677777788999999999999999999999999988
Q ss_pred HHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHH
Q psy6064 221 AIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILS 300 (568)
Q Consensus 221 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s 300 (568)
+++++.++......+..+ . ..+.+.. +.+++.|+|+.+++.++..+.|+|.|+|.+++++||+|||+|++|||+..+
T Consensus 164 ~~~ii~~~~~~~~~~~~~-~-~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~ 240 (456)
T PRK10238 164 VAMIIFGGWLLFSGNGGP-Q-ATVSNLW-DQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQV 240 (456)
T ss_pred HHHHHHHHHHHHcCCCCC-C-ccccccC-CCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 777665543211111011 0 0111111 123466778888888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccc
Q psy6064 301 LLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLY 379 (568)
Q Consensus 301 ~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP 379 (568)
+..+.++|+..........|+++... ++|+.+++++.+.++...++++.++.+.+++.++.+++.||++|+|||||.+|
T Consensus 241 ~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP 320 (456)
T PRK10238 241 IYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP 320 (456)
T ss_pred HHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999998888887888887753 57999999989888888899999999999999999999999999999999999
Q ss_pred hhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCcc
Q psy6064 380 ERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEV 453 (568)
Q Consensus 380 ~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~ 453 (568)
++|+|+| |+++|++|++++++++.+..++. .++.+.++++...+++|.++.++.+++||++++
T Consensus 321 ~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~---------- 389 (456)
T PRK10238 321 KALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQE---------- 389 (456)
T ss_pred HHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 9999999 66999999999999988776652 489999999999999999999999999988752
Q ss_pred cccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHHHH
Q psy6064 454 DFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLM 533 (568)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 533 (568)
+..+++|+.|++|+.++++++.+.+++
T Consensus 390 -----------------------------------------------------~~~~~~~~~~~~p~~~~~~~~~~~~~~ 416 (456)
T PRK10238 390 -----------------------------------------------------QGVVTRFPALLYPLGNWICLLFMAAVL 416 (456)
T ss_pred -----------------------------------------------------cCCCCCCcCCCccHHHHHHHHHHHHHH
Confidence 123567899999999999988888775
Q ss_pred hcC--CH---HHHHHHHHHHHHHHHHhhhccc
Q psy6064 534 INL--DV---STWVRFLVWLVLGMVVYFTYSI 560 (568)
Q Consensus 534 ~~~--~~---~~~~~~~~~~~~g~~~y~~~~~ 560 (568)
... .+ ........++++-.+.|.++++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (456)
T PRK10238 417 VIMLMTPGMAISVYLIPVWLIVLGIGYLFKEK 448 (456)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 543 11 2333344444444445655443
No 11
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=8.6e-47 Score=406.64 Aligned_cols=391 Identities=19% Similarity=0.263 Sum_probs=307.7
Q ss_pred CCccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------cchh----h-
Q psy6064 78 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN-------PNLR----V- 144 (568)
Q Consensus 78 ~~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~-------P~~~----Y- 144 (568)
.+++++||+|+.++++++++|+++|+|+|..++... +.+||+ ++++|+++++++++.+++| |+-+ |
T Consensus 8 ~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~-~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~ 86 (489)
T PRK10836 8 TEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATI-SQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYG 86 (489)
T ss_pred CCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Confidence 344679999999999999999999999999999966 678996 8999999999999999999 5211 2
Q ss_pred ------HHHHHHHHHHHHHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q psy6064 145 ------LNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLG 218 (568)
Q Consensus 145 ------~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~ 218 (568)
..++..||.+++.+....+......... ...-....+.+.++.+++++++.+|++|+|..+++|++++.+|+.
T Consensus 87 ~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~ 165 (489)
T PRK10836 87 QNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLV-MSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVT 165 (489)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCCchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 7889999999987766443321111111 111011223345566777788999999999999999999999998
Q ss_pred HHHHHHhhhccccc--CCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhH
Q psy6064 219 TVAIIVFSGLFRLN--PANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLA 296 (568)
Q Consensus 219 ~l~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~a 296 (568)
.++.+++.++.... ..+.+. ..+.++.++.+ ..+.++.+++.++...+|+|.|||.+++++||+|||+|++|||
T Consensus 166 ~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrA 241 (489)
T PRK10836 166 TVIVFIIVGVLMIIGIFKGAEP---AGWSNWTIGDA-PFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRA 241 (489)
T ss_pred HHHHHHHHHHHHHHcCCCCCCC---CccccCCCCCC-CCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHH
Confidence 88777766554311 100000 00111111111 1234666677677777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcC---------CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHH
Q psy6064 297 IILSLLIVFVCYFSIAVVITMIVPYYEQN---------ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPR 367 (568)
Q Consensus 297 i~~s~~~~~v~y~l~~~~~~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR 367 (568)
+..++..+.++|++.+.++...+|.++.. ..+|+..++...+.+++..++++.++++.+++.|+.+++.||
T Consensus 242 i~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR 321 (489)
T PRK10836 242 VRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTR 321 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876432 246888888888888888999999999999999999999999
Q ss_pred HHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy6064 368 ILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSG 441 (568)
Q Consensus 368 ~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 441 (568)
++|+|||||.+|++|+|+| |+|+|++|++++++++.+..+.. .++.+.+++++..++.|.+.+++.+++||+.
T Consensus 322 ~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~ 400 (489)
T PRK10836 322 MLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGY 400 (489)
T ss_pred HHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 67999999999999988776653 2677899999999999999999999999864
Q ss_pred CcccccccCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCC-CCCCccccccch
Q psy6064 442 DEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNT-GRLKFKVPWVPL 520 (568)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~ 520 (568)
+++ +++ .++|||+|+.|+
T Consensus 401 ~~~-------------------------------------------------------------~~~~~~~p~~~p~~p~ 419 (489)
T PRK10836 401 VLQ-------------------------------------------------------------GHDLNDLPYRSGFFPL 419 (489)
T ss_pred Hhc-------------------------------------------------------------CCCcCCCCCcCCCccH
Confidence 210 002 348999999999
Q ss_pred hHHHHHHHHHHHHhcC
Q psy6064 521 IPCLSMFMNIYLMINL 536 (568)
Q Consensus 521 ~~~~~~~~~~~l~~~~ 536 (568)
.|.++++.|++++...
T Consensus 420 ~~~~~~~~~~~~~~~~ 435 (489)
T PRK10836 420 GPIFAFVLCLIITLGQ 435 (489)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987753
No 12
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=1.1e-46 Score=402.89 Aligned_cols=417 Identities=18% Similarity=0.267 Sum_probs=326.8
Q ss_pred ccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cch----hh----
Q psy6064 80 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNL----RV---- 144 (568)
Q Consensus 80 ~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~----~Y---- 144 (568)
++++||+|+.++++++++|.++|+|+|..++... +.+||+.+++|++++++.++.++++ |.- .|
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~-~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~ 82 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAI-KMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN 82 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4579999999999999999999999999999855 6789999999999999999999998 521 13
Q ss_pred ---HHHHHHHHHHHHHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q psy6064 145 ---LNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVA 221 (568)
Q Consensus 145 ---~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~ 221 (568)
..++..||.+++.+.............. ...-..+.+...+++++++++..+|++|+|..+++|.+++.+|+..++
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~ 161 (457)
T PRK10580 83 LGPLAGYITGWTYCFEILIVAIADVTAFGIY-MGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATII 161 (457)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCChHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Confidence 7899999999987755333221111111 000011223345666777888999999999999999999999999888
Q ss_pred HHHhhhccc--ccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064 222 IIVFSGLFR--LNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299 (568)
Q Consensus 222 ~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~ 299 (568)
++++.++.. ....+... .......+ ..+++.|.|+.+++.++..++|+|.|+|.+++++||+|||+|++|||++.
T Consensus 162 ~~ii~~~~i~~~~~~~~~~-~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~ 238 (457)
T PRK10580 162 IMIVAGIGIIIWGIGNGGQ-PTGIHNLW--SNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINS 238 (457)
T ss_pred HHHHHHHHHHHcCCCCCCC-CCCccccC--CCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHH
Confidence 776665421 11111000 00011001 11234577888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCcc
Q psy6064 300 SLLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL 378 (568)
Q Consensus 300 s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~l 378 (568)
++.++.++|++...+.....|+++... ++|+...++..+.+++..++.+.++++.+++.|+.+++.||++|+|||||.+
T Consensus 239 ~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~l 318 (457)
T PRK10580 239 VPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSA 318 (457)
T ss_pred HHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999888889887764 4688888888888888888888889999999999999999999999999999
Q ss_pred chhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCc
Q psy6064 379 YERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSE 452 (568)
Q Consensus 379 P~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~ 452 (568)
|++|+|+| |+|+|++|+++++++.++..++. .++.+.+++++..+++|.+++++.+++|+++++
T Consensus 319 P~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~--------- 388 (457)
T PRK10580 319 PKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPP--------- 388 (457)
T ss_pred CHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 99999999 57999999999977655433221 377899999999999999999999999988641
Q ss_pred ccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHHH
Q psy6064 453 VDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYL 532 (568)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l 532 (568)
++..++|||.|++++.+.++++.+.++
T Consensus 389 -----------------------------------------------------~~~~~~~f~~~~~~~~~~~~~~~~~~~ 415 (457)
T PRK10580 389 -----------------------------------------------------EEVKALKFKVPGGVATTIGGLIFLVFI 415 (457)
T ss_pred -----------------------------------------------------cCCCCCCcccCCccHHHHHHHHHHHHH
Confidence 113567999999999999999988887
Q ss_pred HhcC-----CHHHHHHHHHHHHHHHHHhhhccccccc
Q psy6064 533 MINL-----DVSTWVRFLVWLVLGMVVYFTYSIDHSK 564 (568)
Q Consensus 533 ~~~~-----~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 564 (568)
+... ..........|++++.+.|..|+|+++.
T Consensus 416 ~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 452 (457)
T PRK10580 416 IGLIGYHPDTRISLYVGFAWIVLLLIGWMFKRRHDRQ 452 (457)
T ss_pred HHHHHHCccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 6542 2344567778899999999887654444
No 13
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=6.1e-47 Score=403.29 Aligned_cols=400 Identities=18% Similarity=0.273 Sum_probs=325.4
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cc----hhh------
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PN----LRV------ 144 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~----~~Y------ 144 (568)
++||++|+++++++++|+++|+|+|..++.+. .+||..+++|+++++..++.+++| |. +.|
T Consensus 3 ~~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~--~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G 80 (438)
T PRK10655 3 AKSNKMGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFG 80 (438)
T ss_pred CccCcccHHHHHHHHHHhhhhhHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcC
Confidence 35789999999999999999999999988754 468888999999999999999999 42 113
Q ss_pred -HHHHHHHHHHHHHHhhhhHH-----HHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q psy6064 145 -LNSDVKAISNQIDSLMGNAY-----QKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLG 218 (568)
Q Consensus 145 -~~~~~~~w~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~ 218 (568)
..++..+|.+++.+..+... ..|....++.. ..+....++.++++++++.+|++|+|..+++|++.+..+++
T Consensus 81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~--~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~ 158 (438)
T PRK10655 81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGAT--LSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWGVII 158 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 78899999988877664322 23333322211 11122235567777889999999999999999999999988
Q ss_pred HHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccc---hhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhh
Q psy6064 219 TVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFG---VNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPL 295 (568)
Q Consensus 219 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ 295 (568)
.++++++.++...+.+++... +.|.+ +.++..++..++|+|.|||.+++++||+|||+||+||
T Consensus 159 ~l~~~~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPr 224 (438)
T PRK10655 159 PVVGLSIIGWFWFSPSLYVAA--------------WNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPI 224 (438)
T ss_pred HHHHHHHHHHHHhCcccccCC--------------cCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccH
Confidence 888777777655443332110 11111 3567888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHh
Q psy6064 296 AIILSLLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSR 374 (568)
Q Consensus 296 ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ar 374 (568)
|++.++.++.++|++...+.....|+++... ++|+.+.+.+..++++..++.+.++++.+++.++.+.+.+|++++|+|
T Consensus 225 Ai~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~ 304 (438)
T PRK10655 225 AVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSAD 304 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988888888877653 568888888888888888888889999999999999999999999999
Q ss_pred cCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh-------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccccc
Q psy6064 375 DGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF-------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVE 447 (568)
Q Consensus 375 dg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~-------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~ 447 (568)
||.+|++|+|+| |+++|++|++++++++.++.+.. .++.+.++.++..++.|.+++++.+++|+|+|
T Consensus 305 dg~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~----- 378 (438)
T PRK10655 305 EGYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVAN----- 378 (438)
T ss_pred CCchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----
Confidence 999999999999 67999999999999887665532 48899999999999999999999999999886
Q ss_pred ccCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHH
Q psy6064 448 TCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMF 527 (568)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 527 (568)
+.+||||.| +++|.++.+
T Consensus 379 ------------------------------------------------------------~~~~~~~~~--~~~~~~~~~ 396 (438)
T PRK10655 379 ------------------------------------------------------------VPPSKAKVA--NFIAFVGAL 396 (438)
T ss_pred ------------------------------------------------------------CCcchhHHH--HHHHHHHHH
Confidence 457888876 378889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy6064 528 MNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQKA 567 (568)
Q Consensus 528 ~~~~l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 567 (568)
.+++++...+........+++++|+++|..+++|+.+++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 397 YSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9888887777767777788999999999777666655554
No 14
>KOG1287|consensus
Probab=100.00 E-value=1.2e-47 Score=392.00 Aligned_cols=410 Identities=21% Similarity=0.307 Sum_probs=335.7
Q ss_pred CCCccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcCh-h-HHHHHHHHHHHHHHhhhcc-------c----chh
Q psy6064 77 ASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-S-VVISFAIAAVTSLFSVVKN-------P----NLR 143 (568)
Q Consensus 77 ~~~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp-~-~~~~~li~~v~~~~~a~~~-------P----~~~ 143 (568)
.+++.++|||+|+++.+.+.+++++|+|+|.++..+. ..+|+ + .+..|+.++++++..++|| | ++.
T Consensus 4 ~~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl-~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~a 82 (479)
T KOG1287|consen 4 SGEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVL-ANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYA 82 (479)
T ss_pred CcccccccceeeeecceeEEEEeeEecccccCcHHHH-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchh
Confidence 3456678999999999999999999999999999977 55666 4 7889999999999999999 3 222
Q ss_pred h-------HHHHHHHHHHHHHHhh------hhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHH
Q psy6064 144 V-------LNSDVKAISNQIDSLM------GNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNN 210 (568)
Q Consensus 144 Y-------~~~~~~~w~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~ 210 (568)
| ..+|...|..++...- ...+.+|....+....+.+.....+++.+++++++.+|+.++|+..++|+
T Consensus 83 yi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~vq~ 162 (479)
T KOG1287|consen 83 YISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATRVQI 162 (479)
T ss_pred hHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3 7888888887763322 22333442222211333444455689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcc
Q psy6064 211 VLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPK 290 (568)
Q Consensus 211 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~ 290 (568)
+++..|++.+.++++.|+......+.++...+-+ .+.+ .....+..++....|+|.|||...+.+||+|||+
T Consensus 163 ~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f---~g~~-----~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ 234 (479)
T KOG1287|consen 163 VFTIAKLLALLLIIITGLYLLFWGSTQNFENSEF---EGSD-----TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR 234 (479)
T ss_pred HHHHHHHHHHHHHHHhchheeEeccccccccccc---ccCc-----CchHHHHHHHHHhhhcccCchhhccchHhhcCcc
Confidence 9999999999999999998543322221111101 1111 1233478899999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q psy6064 291 RNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDR-LGWPVMKWLVTVGSLFALFTAMFGAFFPLPRIL 369 (568)
Q Consensus 291 r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l 369 (568)
||+|||+..++.+++++|++.++++..+++++|...++.++.-|.+ .+|.+. +.+.+.+.++++|+.|+.+++.||++
T Consensus 235 ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~ 313 (479)
T KOG1287|consen 235 RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLF 313 (479)
T ss_pred ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999998766666666655 455555 99999999999999999999999999
Q ss_pred HHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccccccc
Q psy6064 370 YAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETC 449 (568)
Q Consensus 370 ~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~ 449 (568)
+++||+|++|+.|++.|+++.+|..|+++++.+++++.+..+++++++..++...+.+.+..++++++|+|+|
T Consensus 314 ~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p------- 386 (479)
T KOG1287|consen 314 YAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHP------- 386 (479)
T ss_pred HHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------
Confidence 9999999999999999988889999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHH
Q psy6064 450 DSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMN 529 (568)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 529 (568)
+.+||+|+|. +.|.+.++.+
T Consensus 387 ----------------------------------------------------------~~~rPiKvpl--~~p~~~~~~~ 406 (479)
T KOG1287|consen 387 ----------------------------------------------------------PLPRPIKVPL--FIPILFLLIC 406 (479)
T ss_pred ----------------------------------------------------------CCCCCEeeee--ehHHHHHHHH
Confidence 5899999998 7899988998
Q ss_pred HHHHhcC---C-HHHHHHHHHHHHHHHHHhhhcccccc
Q psy6064 530 IYLMINL---D-VSTWVRFLVWLVLGMVVYFTYSIDHS 563 (568)
Q Consensus 530 ~~l~~~~---~-~~~~~~~~~~~~~g~~~y~~~~~~~~ 563 (568)
+++...- + +....+..+.++.|+++|+....+++
T Consensus 407 i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~ 444 (479)
T KOG1287|consen 407 IFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKK 444 (479)
T ss_pred HHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecC
Confidence 8886542 2 33355566667889999987755443
No 15
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=1.7e-46 Score=400.36 Aligned_cols=409 Identities=22% Similarity=0.289 Sum_probs=323.0
Q ss_pred ccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------cchh----h---
Q psy6064 80 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN-------PNLR----V--- 144 (568)
Q Consensus 80 ~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~-------P~~~----Y--- 144 (568)
++++||+++.+++++++++.++| |.+...+. ....+||. .+++|++++++.++.+++| |+-+ |
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~-~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNF-GLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhh-HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56799999999999999999997 77776655 33678885 7899999999999999888 5222 2
Q ss_pred ----HHHHHHHHHHHHHHhhhhHHHHHHHHhc-cccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q psy6064 145 ----LNSDVKAISNQIDSLMGNAYQKSMESLL-PIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT 219 (568)
Q Consensus 145 ----~~~~~~~w~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~ 219 (568)
..++..+|.+++.+....+......+.+ ....+ ..+.+.++++++++++.+|++|+|..+++|.++.+++++.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p--~~~~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~ 157 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFP--VGPGWLAALVFYIVFIGINILGVGEAAKLEFVVTAVAIIA 157 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7899999999998877654432222111 10011 1234567778888889999999999999999999988877
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064 220 VAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299 (568)
Q Consensus 220 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~ 299 (568)
++++++.+....+..++ .+... .+.+++.|.++.+++.++..++|+|.|+|.+++++||+|||+|++|||++.
T Consensus 158 l~i~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~ 230 (442)
T TIGR00908 158 LGVFIGAMVPHFDSANL------FNGPQ-TGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIG 230 (442)
T ss_pred HHHHHHHHhccCCHHHh------ccCCc-cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHH
Confidence 66555443222111111 11111 122345667777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcC-CCCCHHHHHHHhCh--hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcC
Q psy6064 300 SLLIVFVCYFSIAVVITMIVPYYEQN-ADAPFPAIFDRLGW--PVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDG 376 (568)
Q Consensus 300 s~~~~~v~y~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~--~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg 376 (568)
++.++.++|+..........|++++. +++|+.++++...+ .+...++.+..+++.+++.++.+++.+|++|+|||||
T Consensus 231 s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg 310 (442)
T TIGR00908 231 AILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAG 310 (442)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999888777667766664 45688888877633 4566677777788889999999999999999999999
Q ss_pred ccchhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCccccc
Q psy6064 377 LLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFV 456 (568)
Q Consensus 377 ~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~~ 456 (568)
.+|++|+|+| |+|+|++|++++++++.++.+..+.+.+.++.++..++.|.+.+++++++|+++|
T Consensus 311 ~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p-------------- 375 (442)
T TIGR00908 311 YLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRP-------------- 375 (442)
T ss_pred CccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------
Confidence 9999999999 9999999999999999988887788889999999999999999999999999887
Q ss_pred chhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHHHHhc-
Q psy6064 457 HVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMIN- 535 (568)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~- 535 (568)
+.+||||.|.+|+.|+++++.+.+++..
T Consensus 376 ---------------------------------------------------~~~rp~~~p~~~~~~~l~~~~~~~~l~~~ 404 (442)
T TIGR00908 376 ---------------------------------------------------DMERPYRTPGGILTPGVALVLACVALVTG 404 (442)
T ss_pred ---------------------------------------------------CCCCCccCCCcchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999988877654
Q ss_pred --CCHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy6064 536 --LDVSTWVRFLVWLVLGMVVYFTYSIDHSKQ 565 (568)
Q Consensus 536 --~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 565 (568)
.++..+....++.+++.+.|+.|+|+|.++
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 405 FYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 355455555667777888888887766554
No 16
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=7.7e-46 Score=394.17 Aligned_cols=395 Identities=36% Similarity=0.616 Sum_probs=335.0
Q ss_pred cccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h-------
Q psy6064 83 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V------- 144 (568)
Q Consensus 83 l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y------- 144 (568)
+||++|.++.+++.++.++|+|+|..++... ..+||..+++|+++++..++.++++ |+-. |
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~-~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 5899999999999999999999999999865 5678998999999999999999888 5321 2
Q ss_pred HHHHHHHHHHHHHHhhhhHHH-----HHHHHhcc---ccCCCCC-------cchhHHHHHHHHHHHHHHHhcchhHHHHH
Q psy6064 145 LNSDVKAISNQIDSLMGNAYQ-----KSMESLLP---IKSSFLS-------SYPDFIAPIFVAVITGLLSWGASESAKVN 209 (568)
Q Consensus 145 ~~~~~~~w~~~l~~~~~~~~~-----~~~~~~~~---~~~~~~~-------~~~~~ia~~~i~~~~~ln~~g~~~~~~~~ 209 (568)
..++..+|.+++.+....+.. +++...+. .+.+... ....+.+++++++++.+|++|+|..+|++
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~ 159 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVN 159 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 789999999988876543332 23322222 1111100 00114567788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCc
Q psy6064 210 NVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNP 289 (568)
Q Consensus 210 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP 289 (568)
.++..++++.++++++.++...+.+++++ +.|.++.++..++...+|+|.|+|.+++++||+|||
T Consensus 160 ~v~~~~~i~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p 224 (429)
T TIGR00909 160 DILVVLKVAALLLFAALGAIHFASNNYTP---------------FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNP 224 (429)
T ss_pred HHHHHHHHHHHHHhhhHHHhhCcHHhcCC---------------CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCc
Confidence 99999999988877777665444333321 123456678899999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q psy6064 290 KRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRI 368 (568)
Q Consensus 290 ~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 368 (568)
+|++||++..++.++.++|++.+++.....|.++..+ +.|+..+..+.+++++..++.+.++++.+++.++.+.+.+|+
T Consensus 225 ~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 304 (429)
T TIGR00909 225 ERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRV 304 (429)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888876654 457888888888899999999999999999999999999999
Q ss_pred HHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccc
Q psy6064 369 LYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVET 448 (568)
Q Consensus 369 l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~ 448 (568)
++++||||.+|++|+|+|+|+++|++|++++++++.++....+++.+.++.++..++.|.+.+++.+++|+|+|
T Consensus 305 ~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~------ 378 (429)
T TIGR00909 305 LFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRP------ 378 (429)
T ss_pred HHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------
Confidence 99999999999999999999999999999999999988877889999999999999999999999999998887
Q ss_pred cCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHH
Q psy6064 449 CDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFM 528 (568)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 528 (568)
+.+||||.|..|+.+.+.+..
T Consensus 379 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 399 (429)
T TIGR00909 379 -----------------------------------------------------------DIQRAFRCPLVPVLPVLVVSY 399 (429)
T ss_pred -----------------------------------------------------------CCCCCCCCCcchHHHHHHHHH
Confidence 567999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhc
Q psy6064 529 NIYLMINLDVSTWVRFLVWLVLGMVVYFTY 558 (568)
Q Consensus 529 ~~~l~~~~~~~~~~~~~~~~~~g~~~y~~~ 558 (568)
+.+++...++..+....+|+++|.+.|..|
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 429 (429)
T TIGR00909 400 CIYLLLNLGPGTTVWFLVWMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHcC
Confidence 999888889999999999999999999765
No 17
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=5.7e-46 Score=396.25 Aligned_cols=401 Identities=18% Similarity=0.224 Sum_probs=320.3
Q ss_pred cccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h-----
Q psy6064 81 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V----- 144 (568)
Q Consensus 81 ~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y----- 144 (568)
.+++|++|+++++++++|.++|+|+|..++.++ .. |+..+++|+++++.+++.+++| |+-+ |
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a-~~-g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~ 81 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLA-ST-GGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCF 81 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHc
Confidence 357899999999999999999999999999865 33 5567899999999999999998 5322 2
Q ss_pred --HHHHHHHHHHHHHHhhhhHHHH-HHHHhccccCCCC--CcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q psy6064 145 --LNSDVKAISNQIDSLMGNAYQK-SMESLLPIKSSFL--SSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT 219 (568)
Q Consensus 145 --~~~~~~~w~~~l~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~ 219 (568)
..++..+|.+++.+.++..... ..........+.. +....+++++++++++.+|.+|+|..+++|++++.++++.
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~~~i~ 161 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIP 161 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 7899999999987655433221 1111111111111 1112345677778899999999999999999999999988
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064 220 VAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299 (568)
Q Consensus 220 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~ 299 (568)
++++++.++...+.+++.... +. .+ ..++.++..++..++|+|.|+|.+++++||+|||+|++|||++.
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~--------~~-~~--~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~ 230 (445)
T PRK10644 162 IVGIAVFGWFWFRGETYMAAW--------NV-SG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIG 230 (445)
T ss_pred HHHHHHHHHHHhCchhccCCc--------cc-cc--cchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHH
Confidence 888877776544332221110 00 01 12355678888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcC-CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCcc
Q psy6064 300 SLLIVFVCYFSIAVVITMIVPYYEQN-ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL 378 (568)
Q Consensus 300 s~~~~~v~y~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~l 378 (568)
++.++.++|++.++++..++|+++.. +++|+.++++...++++..++.+.++++.+++.++.+...+|++++|||||.+
T Consensus 231 s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~l 310 (445)
T PRK10644 231 GVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLF 310 (445)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999987765 45789888888878888888888888999999999999999999999999999
Q ss_pred chhhhccCCCCccchHHHHHHHHHHHHHHHHh-------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCC
Q psy6064 379 YERLSYVSSRTQTPLLSTALSGVITAVMSAVF-------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDS 451 (568)
Q Consensus 379 P~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~-------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~ 451 (568)
|++|+|+| |+++|++|++++++++.++.+.. .++.+.+++++..+++|.+++++.+++|+|++
T Consensus 311 P~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~--------- 380 (445)
T PRK10644 311 PPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF--------- 380 (445)
T ss_pred cHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------
Confidence 99999999 57999999999999988766542 48899999999999999999999999988765
Q ss_pred cccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHH
Q psy6064 452 EVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIY 531 (568)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 531 (568)
+ ++.|+.|+.|+++++.+++
T Consensus 381 --------------------------------------------------------~----~~~p~~~~~~~~~~~~~~~ 400 (445)
T PRK10644 381 --------------------------------------------------------G----KARPAYLAVTLIAFVYCIW 400 (445)
T ss_pred --------------------------------------------------------c----ccccchhHHHHHHHHHHHH
Confidence 1 2235667899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhh-ccccccc
Q psy6064 532 LMINLDVSTWVRFLVWLVLGMVVYFT-YSIDHSK 564 (568)
Q Consensus 532 l~~~~~~~~~~~~~~~~~~g~~~y~~-~~~~~~~ 564 (568)
++...++.+.....++++++.++|+. +++||++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 434 (445)
T PRK10644 401 AVVGSGAKEVMWSFVTLMVITAFYALNYNRLHKN 434 (445)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99888888888887888888888854 5555543
No 18
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=2.1e-45 Score=392.94 Aligned_cols=414 Identities=16% Similarity=0.248 Sum_probs=321.1
Q ss_pred ccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h----
Q psy6064 80 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V---- 144 (568)
Q Consensus 80 ~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y---- 144 (568)
+.++||+|+.++++++++|.++|+|+|..++... +.+||..+++|++++++.++.++++ |+-+ |
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAI-ASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4569999999999999999999999999999865 6789988899999999999999998 5221 2
Q ss_pred ---HHHHHHHHHHHHHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q psy6064 145 ---LNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVA 221 (568)
Q Consensus 145 ---~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~ 221 (568)
..++..+|.+++++.+..+......... ...-....+.+.++++++++++.+|++|+|..+++|++++++|++.++
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~ 164 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGI-LQYWFPDIPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAII 164 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcCcHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 7899999999998877654432222211 000011234557788888889999999999999999999999999888
Q ss_pred HHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHH
Q psy6064 222 IIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSL 301 (568)
Q Consensus 222 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~ 301 (568)
.+++.++......+-.... ..+.+..+ .+++.|+|+.+++.++..+.|+|.|+|.+++++||+|||+|++|||+..++
T Consensus 165 ~~ii~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~ 242 (452)
T TIGR01773 165 AFIILGAVAIFGFAPGSEV-SGFSNLTG-KGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVI 242 (452)
T ss_pred HHHHHHHHHHHcCCCCCCC-CccccccC-CCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHH
Confidence 7777665422110000000 00111111 233567788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcC--CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccc
Q psy6064 302 LIVFVCYFSIAVVITMIVPYYEQN--ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLY 379 (568)
Q Consensus 302 ~~~~v~y~l~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP 379 (568)
..+.++|++.........|+++.. +++|+.++.+..+++++..++++.++++.+++.++.+++.||++|+|||||.+|
T Consensus 243 ~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP 322 (452)
T TIGR01773 243 WRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAP 322 (452)
T ss_pred HHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 999999999988888888866543 234888888888888888999999999999999999999999999999999999
Q ss_pred hhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCcc
Q psy6064 380 ERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEV 453 (568)
Q Consensus 380 ~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~ 453 (568)
++|+|+| |+++|++|++++.+++++..+.. .++.++++.+...++.|.+..++.+++|+++|+
T Consensus 323 ~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~---------- 391 (452)
T TIGR01773 323 RVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKA---------- 391 (452)
T ss_pred HHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 9999999 77999999999999988766542 267888999999999999999999999988752
Q ss_pred cccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHHHH
Q psy6064 454 DFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLM 533 (568)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~ 533 (568)
++.+.+||.|++|+.++++++.+.+++
T Consensus 392 -----------------------------------------------------~~~~~~~~~~~~p~~~~~~~~~~~~~~ 418 (452)
T TIGR01773 392 -----------------------------------------------------NGEAIKIRMWLYPWLTWLVIIFICGIL 418 (452)
T ss_pred -----------------------------------------------------cCCCCCccCCCccHHHHHHHHHHHHHH
Confidence 123456778888888888777666553
Q ss_pred hcC-----CHHHHHHHHHHHHHHHHHhhhcccc
Q psy6064 534 INL-----DVSTWVRFLVWLVLGMVVYFTYSID 561 (568)
Q Consensus 534 ~~~-----~~~~~~~~~~~~~~g~~~y~~~~~~ 561 (568)
... ...+......+++....+|+.++||
T Consensus 419 ~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~~ 451 (452)
T TIGR01773 419 VSMLFIPSMRDEVLLTGLLTIIVLCSYLVFARR 451 (452)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHHHHHHhhcc
Confidence 321 2233344445555666667765544
No 19
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=3.9e-45 Score=395.39 Aligned_cols=402 Identities=21% Similarity=0.296 Sum_probs=311.5
Q ss_pred CccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcCh-h-HHHHHHHHHHHHHHhhhcc-------cchh----h-
Q psy6064 79 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-S-VVISFAIAAVTSLFSVVKN-------PNLR----V- 144 (568)
Q Consensus 79 ~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp-~-~~~~~li~~v~~~~~a~~~-------P~~~----Y- 144 (568)
+++++||+++.++++++++++++|+|+|.+++.+. ..+|| + .+++|+++++++++.++++ |+-+ |
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~-~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVL-KNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHH-hhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 55689999999999999999999999999999866 45666 4 4689999999999999998 5322 2
Q ss_pred ------HHHHHHHHHHHHHHhhh-h-----HHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q psy6064 145 ------LNSDVKAISNQIDSLMG-N-----AYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVL 212 (568)
Q Consensus 145 ------~~~~~~~w~~~l~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~ 212 (568)
..++..+|..++..... . ....|.......+.........+++++++++++.+|++|+|..+|+|+++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~ 194 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQDIF 194 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 77888999876532111 1 11222221111111111222346778888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCCCcc-cccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCccc
Q psy6064 213 TFANLGTVAIIVFSGLFRLNPANWTI-RREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKR 291 (568)
Q Consensus 213 ~~~~~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r 291 (568)
+.+++++++++++.++......+.+. .....+.. . +.+..++..++..++|+|.|||.+++++||+|||+|
T Consensus 195 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~-------~-~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r 266 (501)
T TIGR00911 195 TACKLLALLLIIITGWVQLGKGGVESLNPKNAFEG-------T-ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccccCcccccCC-------C-CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh
Confidence 99999998888887766432222111 11111110 0 123556888999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6064 292 NIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFD-RLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILY 370 (568)
Q Consensus 292 ~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~ 370 (568)
++|||+..++.++.++|++.++++...+|++++..+.+....+. ...+ ....++.+.++++.+++.++.+.+.||+++
T Consensus 267 ~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~ 345 (501)
T TIGR00911 267 TLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFF 345 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887765544443333 3333 556778888889999999999999999999
Q ss_pred HHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccC
Q psy6064 371 AMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCD 450 (568)
Q Consensus 371 a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~ 450 (568)
+|||||.+|++|+|+|+|+++|++|+++++++++++.+..++..++++.++...+.|.+..++.+++|+|+|
T Consensus 346 a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p-------- 417 (501)
T TIGR00911 346 VGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRP-------- 417 (501)
T ss_pred HHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCC--------
Confidence 999999999999999999999999999999999887777788888889999999999999999999999887
Q ss_pred CcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHH
Q psy6064 451 SEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNI 530 (568)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 530 (568)
+.+||||.|. +.|.++++.++
T Consensus 418 ---------------------------------------------------------~~~rp~r~p~--~~~~l~~~~~~ 438 (501)
T TIGR00911 418 ---------------------------------------------------------EMNRPIKVPL--FFPVFFLLSCL 438 (501)
T ss_pred ---------------------------------------------------------CCCCCccCch--HHHHHHHHHHH
Confidence 5788999997 57778888877
Q ss_pred HHHhc---CCHHHHHHHHHHHHHHHHHhhh
Q psy6064 531 YLMIN---LDVSTWVRFLVWLVLGMVVYFT 557 (568)
Q Consensus 531 ~l~~~---~~~~~~~~~~~~~~~g~~~y~~ 557 (568)
+++.. .++........++++|+++|+.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 468 (501)
T TIGR00911 439 FLIILSLYSPPVGCGVGFIIMLTGVPVYFF 468 (501)
T ss_pred HHhhhhhccCchhhHHHHHHHHHHHHHHHH
Confidence 77643 2334444456678888888863
No 20
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=5.3e-45 Score=392.71 Aligned_cols=386 Identities=18% Similarity=0.275 Sum_probs=303.5
Q ss_pred ccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------cc----hh-h------
Q psy6064 84 ARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN-------PN----LR-V------ 144 (568)
Q Consensus 84 ~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~-------P~----~~-Y------ 144 (568)
||+|+.+|+.++++|.++|+|+|.+++... +.+||. .+++|+++++++++.++++ |+ +. |
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~-~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTAL-ATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 589999999999999999999999999966 678885 7999999999999999998 61 21 3
Q ss_pred -HHHHHHHHHHHHHHhhhhHHHHHHHHhc-cccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q psy6064 145 -LNSDVKAISNQIDSLMGNAYQKSMESLL-PIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAI 222 (568)
Q Consensus 145 -~~~~~~~w~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~ 222 (568)
..++..||.+++++.+..+......+.. ....+ +.+...+..+++++++++|++|+|..+++|++++.+|+..++.
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~ 157 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD--KVNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIG 157 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999877655543332221 11111 1223344455667788999999999999999999999888887
Q ss_pred HHhhhcccccCCCCcccccCCCCCCCCCCCCcccc----chhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHH
Q psy6064 223 IVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPF----GVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAII 298 (568)
Q Consensus 223 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~ 298 (568)
+++.++........+ .....+.... +.+++.|. ++.++..++..++|+|.|+|.+++++||+|||+|++|||++
T Consensus 158 ~ii~~i~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~ 235 (478)
T TIGR00913 158 FIILSIILNCGGGPN-HGYIGFRYWH-DPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAK 235 (478)
T ss_pred HHHHHHHHHHcCCCC-CCCCcccccC-CCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHH
Confidence 777665432211100 0000011111 11223332 25678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcC----------CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q psy6064 299 LSLLIVFVCYFSIAVVITMIVPYYEQN----------ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRI 368 (568)
Q Consensus 299 ~s~~~~~v~y~l~~~~~~~~~p~~~~~----------~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 368 (568)
.++.++.++|++..+++...+|+++.. .++|+...++..+.+++..++.+.++++.+++.++.+++.||+
T Consensus 236 ~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 315 (478)
T TIGR00913 236 RTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRT 315 (478)
T ss_pred HHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999998888888866421 1267777777788888888999999999999999999999999
Q ss_pred HHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy6064 369 LYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGD 442 (568)
Q Consensus 369 l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~ 442 (568)
+|+|||||.+|++|+|+| |+++|++|++++++++++..+.. .++.+.++++...++.|++.+++.+++|++.+
T Consensus 316 l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~ 394 (478)
T TIGR00913 316 LYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMK 394 (478)
T ss_pred HHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 78999999999999987644432 37889999999999999999999999998754
Q ss_pred cccccccCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhH
Q psy6064 443 EVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIP 522 (568)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 522 (568)
++. +++.+||||.|++|+.+
T Consensus 395 ~~~------------------------------------------------------------~~~~~~p~~~~~~~~~~ 414 (478)
T TIGR00913 395 AQG------------------------------------------------------------RSLDELPYKSQTGPYGS 414 (478)
T ss_pred hcC------------------------------------------------------------CCcccCCccCCCcchHH
Confidence 210 01457899999999999
Q ss_pred HHHHHHHHHHHhc
Q psy6064 523 CLSMFMNIYLMIN 535 (568)
Q Consensus 523 ~~~~~~~~~l~~~ 535 (568)
.++++.+.+++..
T Consensus 415 ~~~~~~~~~~~~~ 427 (478)
T TIGR00913 415 YYALFFNILILIA 427 (478)
T ss_pred HHHHHHHHHHHHH
Confidence 9998888877553
No 21
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=1.5e-44 Score=383.83 Aligned_cols=395 Identities=16% Similarity=0.191 Sum_probs=308.4
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h------
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V------ 144 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y------ 144 (568)
+.+|++++++++++++|+|+|+|+|..++..+ .+||.++++|+++++.+++.++++ |.-. |
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~~g~ 79 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGEISP 79 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHCc
Confidence 35799999999999999999999999999854 468899999999999999999999 5322 3
Q ss_pred HHHHHHHHHHHHHHhhhhHH-----HHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q psy6064 145 LNSDVKAISNQIDSLMGNAY-----QKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT 219 (568)
Q Consensus 145 ~~~~~~~w~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~ 219 (568)
..++..+|.+|+...++... ..|+...++.. ..+.+..+++++++++++.+|.+|+|..++++.+..+++++.
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~--~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~~li~ 157 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL--NDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIP 157 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 48899999988654333222 23332222110 011122355667778899999999999999999999888877
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064 220 VAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299 (568)
Q Consensus 220 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~ 299 (568)
++.+++.++...+.+++.. ++ +. ..+.++.+++.++..++|+|.|+|.+++++||+|||+|++|||++.
T Consensus 158 ~~~~~i~g~~~~~~~~~~~-------~~-~~---~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~ 226 (435)
T PRK10435 158 VVGTAIVGWHWFDAATYAA-------NW-NT---SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATML 226 (435)
T ss_pred HHHHHHHHHHHcCHHhhcc-------cc-cC---CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHH
Confidence 7666665554333222110 00 00 1123466799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcC-CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCcc
Q psy6064 300 SLLIVFVCYFSIAVVITMIVPYYEQN-ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL 378 (568)
Q Consensus 300 s~~~~~v~y~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~l 378 (568)
++.++.++|++.+++....+|+++.. +++|+.++++..+++++..++++.++++++++.++.++..+|..++|||||.+
T Consensus 227 ~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~l 306 (435)
T PRK10435 227 GTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNF 306 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999988874 56799999988888999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCccchHHHHHHHHHHHHHHHH------------hcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccc
Q psy6064 379 YERLSYVSSRTQTPLLSTALSGVITAVMSAV------------FKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVV 446 (568)
Q Consensus 379 P~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~------------~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~ 446 (568)
|++|+|+| |+|+|++|++++++++.++... ..++.+.++++...++.|++++++.+++|+++
T Consensus 307 P~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~~~----- 380 (435)
T PRK10435 307 PKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEGVN----- 380 (435)
T ss_pred cHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----
Confidence 99999999 7899999999988776553321 14788999999999999999999988654321
Q ss_pred cccCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHH
Q psy6064 447 ETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSM 526 (568)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 526 (568)
+|.+.. |+++.
T Consensus 381 ------------------------------------------------------------------~~~~~~---~~~~~ 391 (435)
T PRK10435 381 ------------------------------------------------------------------IRNFVS---LICSV 391 (435)
T ss_pred ------------------------------------------------------------------hhHHHH---HHHHH
Confidence 222223 44455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy6064 527 FMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQK 566 (568)
Q Consensus 527 ~~~~~l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 566 (568)
+.+++.++.+....|.....|+.++.+.|+.|.+||+++.
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (435)
T PRK10435 392 LGCVFCFIALMGASSFELAGTFIVSLIILMFYARKMHERQ 431 (435)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 5555555554466888888999999999999987776543
No 22
>KOG1289|consensus
Probab=100.00 E-value=1.7e-45 Score=376.15 Aligned_cols=397 Identities=20% Similarity=0.197 Sum_probs=323.3
Q ss_pred CCCCCCccccCCCccccccccChhHHHHHhhccc-ccchhhhhhhHhHhhhcCh-hHHHHHHHHHHHHHHhhhcc-----
Q psy6064 67 DGVGKLPLERASDAPQLARVLGLIDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVVKN----- 139 (568)
Q Consensus 67 ~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~i~~~-ig~gif~~~g~v~~~~~Gp-~~~~~~li~~v~~~~~a~~~----- 139 (568)
++.|++++.+.++|+++||++++|+.++++++.+ .-.|+-.+... ....+|| .+.|+|++++++.+|.++++
T Consensus 30 ~~~d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~-gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~S 108 (550)
T KOG1289|consen 30 DDSDEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAY-GLGSGGPPTLVWGWLIAGFFSICVALSLAELCS 108 (550)
T ss_pred ccCCHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheee-ccccCChHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3344555567899999999999999999999877 22333333222 3344565 58999999999999999998
Q ss_pred --cchh--h-------------HHHHHHHHHHHHHHhhhhHHHHHHHHhc-----cccCC-CC--CcchhHHHHHHHHHH
Q psy6064 140 --PNLR--V-------------LNSDVKAISNQIDSLMGNAYQKSMESLL-----PIKSS-FL--SSYPDFIAPIFVAVI 194 (568)
Q Consensus 140 --P~~~--Y-------------~~~~~~~w~~~l~~~~~~~~~~~~~~~~-----~~~~~-~~--~~~~~~ia~~~i~~~ 194 (568)
|+-+ | .++|.+||.+++++.++.+...+-.+.+ ....+ +. ......+..++.++.
T Consensus 109 a~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~ 188 (550)
T KOG1289|consen 109 AMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVH 188 (550)
T ss_pred hCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHH
Confidence 6322 2 8999999999999999887765554444 22222 22 223346788899999
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhh
Q psy6064 195 TGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFV 274 (568)
Q Consensus 195 ~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~ 274 (568)
+++|+.+.|..++++.+...+.++.+++.+|..+...+.+.--++..+++.+++|.++ |.+.||+ |+.++....|.+.
T Consensus 189 ~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sg-w~~~G~a-fil~f~~~~wt~s 266 (550)
T KOG1289|consen 189 GLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSG-WKNNGWA-FILGFFNPAWTMS 266 (550)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCC-CCcchHH-HHHhhccceeEEe
Confidence 9999999999999999999999999998888888766554322345567777766654 7888998 8889999999999
Q ss_pred hhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCC-Cc--C--CCCCHHHHHHHhChhHHHHHHHHH
Q psy6064 275 GFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYY-EQ--N--ADAPFPAIFDRLGWPVMKWLVTVG 349 (568)
Q Consensus 275 G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~-~~--~--~~~~~~~~~~~~~~~~~~~iv~~~ 349 (568)
|+|+.+|++||+|||+|+.||||+.++.+..++..++++.+.+++|+| +. + .++|+++.+.+..++.+...+...
T Consensus 267 GyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l 346 (550)
T KOG1289|consen 267 GYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSL 346 (550)
T ss_pred ccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHH
Confidence 999999999999999999999999999999999999999999999953 22 1 247999999888777777888888
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHhcCccc--hhhhccCCCCccchHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHH
Q psy6064 350 SLFALFTAMFGAFFPLPRILYAMSRDGLLY--ERLSYVSSRTQTPLLSTALSGVITAVMSAVF-----KLDQLVDMMSIG 422 (568)
Q Consensus 350 ~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~-----~~~~l~~~~~~~ 422 (568)
.+++.+.+..+++.++||+.|+.||||.|| ++++++||++++|.+|+++..+++.++.++. +|+++++++.++
T Consensus 347 ~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~ 426 (550)
T KOG1289|consen 347 IIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIA 426 (550)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999888776 599999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCcccccccCCcccccchhcccccCCCCCcccccccchhhhhHHHH
Q psy6064 423 TLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQ 486 (568)
Q Consensus 423 ~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (568)
.+++|..+.++++..+|++ +++-++..++.+.-..++.+.|.+|
T Consensus 427 l~~Ay~iP~~~rlf~~r~~--------------------f~~gp~~lGk~s~p~~~i~v~w~lf 470 (550)
T KOG1289|consen 427 LFIAYAIPIFCRLFFGRDD--------------------FRPGPFNLGKFSKPIGIIAVLWVLF 470 (550)
T ss_pred HHHHHHHhHHhheeecccc--------------------cCCCCccccccccchHHHHHHHHHH
Confidence 9999999999999988863 2233556666666666666666665
No 23
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=3.4e-44 Score=385.12 Aligned_cols=405 Identities=18% Similarity=0.273 Sum_probs=323.6
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------cc-hh----h----
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN-------PN-LR----V---- 144 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~-------P~-~~----Y---- 144 (568)
+++|++|+++++++++++++|+|+|..++.+. ..+||+ .+++|+++++.+++.+++| |+ -+ |
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~-~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~ 82 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLA-SVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREG 82 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhH
Confidence 34789999999999999999999999999865 578885 7899999999999999998 76 43 3
Q ss_pred ---HHHHHHHHHHHHHHhhhhHHH-----HHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q psy6064 145 ---LNSDVKAISNQIDSLMGNAYQ-----KSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFAN 216 (568)
Q Consensus 145 ---~~~~~~~w~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~ 216 (568)
..++..||.+++.+..+.... .++....+......+.+..+++++++++++.+|++|+|..+|+|++++.++
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~~~ 162 (473)
T TIGR00905 83 FGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAK 162 (473)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 789999999988765543322 122221111111112223456777788899999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhH
Q psy6064 217 LGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLA 296 (568)
Q Consensus 217 ~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~a 296 (568)
++.++++++.++...+.+++... .. ++.....+..+.+++.++...+|+|.|||.+++++||+|| +|++||+
T Consensus 163 l~~l~~~ii~~~~~~~~~~~~~~---~~----~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPra 234 (473)
T TIGR00905 163 LIPLFLFIIIGWFWFKLDLFTAD---FW----GHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKA 234 (473)
T ss_pred HHHHHHHHHHHHHHhCchhcccc---cC----ccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHH
Confidence 99988888877664433332111 00 0000011224567888999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcCC-CCC-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHh
Q psy6064 297 IILSLLIVFVCYFSIAVVITMIVPYYEQNA-DAP-FPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSR 374 (568)
Q Consensus 297 i~~s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~-~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ar 374 (568)
++.++.+++++|++.+.+.....|++++.+ ++| ..++.+...++++..++.+.++++.+++.++.+.+.+|++|+|||
T Consensus 235 i~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amar 314 (473)
T TIGR00905 235 TVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAK 314 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999888887653 567 677777788888888999999999999999999999999999999
Q ss_pred cCccchhhhccCCCCccchHHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccccccc
Q psy6064 375 DGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAV-----FKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETC 449 (568)
Q Consensus 375 dg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~-----~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~ 449 (568)
||.+|++|+|+|+ +++|++|++++++++.++.+. .+++.+.++.++..++.|.+++++.+++|+|++
T Consensus 315 dg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~------- 386 (473)
T TIGR00905 315 DGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGT------- 386 (473)
T ss_pred CCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------
Confidence 9999999999995 599999999999988765543 358999999999999999999999999988762
Q ss_pred CCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHH
Q psy6064 450 DSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMN 529 (568)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 529 (568)
.++ .+.|+.++++.++.+.+
T Consensus 387 -----------------------------------------------------------~~~-~~~~~~~~~~~l~~~~~ 406 (473)
T TIGR00905 387 -----------------------------------------------------------YPK-IKNRKALIVGVIACVYS 406 (473)
T ss_pred -----------------------------------------------------------ccc-cccchHHHHHHHHHHHH
Confidence 111 23456678999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhhcccccc
Q psy6064 530 IYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHS 563 (568)
Q Consensus 530 ~~l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 563 (568)
.++....++.......+++++|+++|+.++++++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 407 IWLLYAAGLKYLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9998888887777788889999999987666543
No 24
>KOG1286|consensus
Probab=100.00 E-value=3.7e-45 Score=388.62 Aligned_cols=357 Identities=31% Similarity=0.509 Sum_probs=291.9
Q ss_pred CccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cch-h----h--
Q psy6064 79 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNL-R----V-- 144 (568)
Q Consensus 79 ~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~-~----Y-- 144 (568)
+++++||+|+.+|+.++++|+++|+|+|+..|.+..+.|||+++++++++++.+++.++|| |.- + |
T Consensus 24 ~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~ 103 (554)
T KOG1286|consen 24 GETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAY 103 (554)
T ss_pred ccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeee
Confidence 3379999999999999999999999999999998877777889999999999999999999 742 2 3
Q ss_pred -----HHHHHHHHHHHHHHhhhhHHH-----HHHHHhc-------c-ccCCCCCcchhHHHHHHHHHHHHHHH-hcchhH
Q psy6064 145 -----LNSDVKAISNQIDSLMGNAYQ-----KSMESLL-------P-IKSSFLSSYPDFIAPIFVAVITGLLS-WGASES 205 (568)
Q Consensus 145 -----~~~~~~~w~~~l~~~~~~~~~-----~~~~~~~-------~-~~~~~~~~~~~~ia~~~i~~~~~ln~-~g~~~~ 205 (568)
..+|+.||.++++|+++.+.. .++..+. . -..+...+.+++++.++++.++.+-. .++|..
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~ 183 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFS 183 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeeh
Confidence 899999999999999987654 2222221 0 01111222334444444444333333 666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhh
Q psy6064 206 AKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEE 285 (568)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E 285 (568)
..++++++.+.++.+.+++++|....+.++|...... .+.+++.|.|+.|++.++..++|+|.|+|.++..+||
T Consensus 184 ~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~------~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E 257 (554)
T KOG1286|consen 184 LAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYW------HDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEE 257 (554)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCcccc------CCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHh
Confidence 7777777777777777777777777766566432210 1235688888999999999999999999999999999
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCC--cCCCCCHHHHHH-HhCh---hHHHHHHHHHHHHHHHHHHH
Q psy6064 286 TRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYE--QNADAPFPAIFD-RLGW---PVMKWLVTVGSLFALFTAMF 359 (568)
Q Consensus 286 ~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~--~~~~~~~~~~~~-~~~~---~~~~~iv~~~~~~~~~~~~~ 359 (568)
+|||+|++|+|+..++.++.++|++..+.+..++|+++ +.++++....|. ..+. +....++++++++++.+++|
T Consensus 258 ~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n 337 (554)
T KOG1286|consen 258 AKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLN 337 (554)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 666666655555 3444 44445999999999999999
Q ss_pred HHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhc------HHHHHHHHHHHHHHHHHHHHHH
Q psy6064 360 GAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFK------LDQLVDMMSIGTLLAYIIVAIC 433 (568)
Q Consensus 360 ~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~------~~~l~~~~~~~~~i~y~~~~~~ 433 (568)
+++++.||.+++||+||++|++|+++|+| |+|+.|++++.+.+.+..+..+ |++++++++++.++.|.+++++
T Consensus 338 ~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~ 416 (554)
T KOG1286|consen 338 SSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALS 416 (554)
T ss_pred HHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999966 9999999999999999988886 4999999999999999999999
Q ss_pred HhhhcccCC
Q psy6064 434 VLLLRYSGD 442 (568)
Q Consensus 434 ~l~~r~~~~ 442 (568)
++++|+..+
T Consensus 417 ~i~~R~a~~ 425 (554)
T KOG1286|consen 417 HLRFRYAMK 425 (554)
T ss_pred Heeeeeccc
Confidence 999998765
No 25
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=5.5e-44 Score=380.20 Aligned_cols=394 Identities=16% Similarity=0.261 Sum_probs=312.9
Q ss_pred HhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h-------HHHHHHHHHHHH
Q psy6064 95 LGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V-------LNSDVKAISNQI 156 (568)
Q Consensus 95 i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y-------~~~~~~~w~~~l 156 (568)
+++|++||+|+|..++... +.+||..+++|+++++++++.++++ |+-+ | ..+|..+|.+++
T Consensus 2 ~~ig~~IGsGif~~~g~~~-~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAI-AEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 6789999999999999855 7788999999999999999999998 5221 3 789999999999
Q ss_pred HHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy6064 157 DSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANW 236 (568)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 236 (568)
.+.+..+......... ........+...++.+++++++.+|++|+|..+++|.+++.+|++.++.+++.++......+.
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~ 159 (446)
T PRK10197 81 FWVLVIPLEANIAAMI-LHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYP 159 (446)
T ss_pred HHHHHHHHHHHHHHHH-HHhccccCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 8877655442222211 110011234557888899999999999999999999999999999888887776653221110
Q ss_pred cccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHh
Q psy6064 237 TIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVIT 316 (568)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~ 316 (568)
....... .+. .+.+++.|+++.+++.++..++|+|.|+|.+++++||+|||+|++|||+..++..+.++|++..++..
T Consensus 160 ~~~~~~~-~~~-~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~ 237 (446)
T PRK10197 160 YAEVSGI-SRL-WDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVV 237 (446)
T ss_pred CCCCCcc-hhc-CCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000 000 11233567888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCcCC--CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchH
Q psy6064 317 MIVPYYEQNA--DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLL 394 (568)
Q Consensus 317 ~~~p~~~~~~--~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~ 394 (568)
..+|+++... .+++..+++..+++++..++++.++++.+++.|+.+++.+|++|+|||||.+|++|+|+| |+|+|++
T Consensus 238 ~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ 316 (446)
T PRK10197 238 ALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYV 316 (446)
T ss_pred eecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cCCCcHH
Confidence 9999876543 346777788888899999999999999999999999999999999999999999999999 7899999
Q ss_pred HHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCcccccchhcccccCCCC
Q psy6064 395 STALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDM 468 (568)
Q Consensus 395 Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (568)
|++++.+++++..+.. .++.++++.+...++.|.+.+++.+++||+.++
T Consensus 317 Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~------------------------- 371 (446)
T PRK10197 317 AVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRA------------------------- 371 (446)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------
Confidence 9999988877655542 488999999999999999999999999987431
Q ss_pred CcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHHHHhcC----CHHHHHHH
Q psy6064 469 TREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINL----DVSTWVRF 544 (568)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ 544 (568)
++.++|||.|++|+.+.++++.+.+++... +.......
T Consensus 372 --------------------------------------~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (446)
T PRK10197 372 --------------------------------------EGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVIS 413 (446)
T ss_pred --------------------------------------cCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHHHHH
Confidence 135789999999999999988886664432 22333334
Q ss_pred HHHHHHHHHHhh
Q psy6064 545 LVWLVLGMVVYF 556 (568)
Q Consensus 545 ~~~~~~g~~~y~ 556 (568)
.+.+++++..|+
T Consensus 414 ~~~~~~~~~~~~ 425 (446)
T PRK10197 414 TGLLAIGIICTV 425 (446)
T ss_pred HHHHHHHHHhhh
Confidence 556677777776
No 26
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=5.1e-43 Score=377.49 Aligned_cols=361 Identities=20% Similarity=0.227 Sum_probs=273.1
Q ss_pred cCCCccccccccChhHHHHHhhccc-ccchhhhhhhHhHhhhcCh-hHHHHHHHHHHHHHHhhhcc-------cchh---
Q psy6064 76 RASDAPQLARVLGLIDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVVKN-------PNLR--- 143 (568)
Q Consensus 76 ~~~~~~~l~r~l~~~~~~~i~i~~~-ig~gif~~~g~v~~~~~Gp-~~~~~~li~~v~~~~~a~~~-------P~~~--- 143 (568)
+.++++++||+++.++.++++++.+ ..+|++...+. ....+|| +.+++|++++++.++.++++ |+-+
T Consensus 3 ~~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y 81 (482)
T TIGR00907 3 ALGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNY-GLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQY 81 (482)
T ss_pred ccCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHH-hhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 4678899999999999999999965 23788887765 4467898 58999999999999999998 5221
Q ss_pred -h-----------HHHHHHHHHHHHHHhhhhHHHH-----HHHHhccccCC---CCC--cchhHHHHHHHHHHHHHHHhc
Q psy6064 144 -V-----------LNSDVKAISNQIDSLMGNAYQK-----SMESLLPIKSS---FLS--SYPDFIAPIFVAVITGLLSWG 201 (568)
Q Consensus 144 -Y-----------~~~~~~~w~~~l~~~~~~~~~~-----~~~~~~~~~~~---~~~--~~~~~ia~~~i~~~~~ln~~g 201 (568)
| ..+|..||.+++.+....+... ++........+ +.+ .....++++++++++.+|++|
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g 161 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLP 161 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhh
Confidence 2 4578899999988776544332 22222111111 211 122356667788899999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhh
Q psy6064 202 ASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIAT 281 (568)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~ 281 (568)
+|..++++++..+++++.++++++..+...+.. . ++..+.+.+..++.+++.|.++ +++.++..+.|+|.|+|.+++
T Consensus 162 ~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~-~-~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~~~ 238 (482)
T TIGR00907 162 TKWLPRITSSAAYWSLLGFLTICITLLACKSPK-F-NDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGTAH 238 (482)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-C-CChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchhhH
Confidence 999999999999998888776655554433211 1 1111222233333334556666 477788889999999999999
Q ss_pred hhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccC-CCc-C--CCCCHHHHHHHh-ChhHHHHHHHHHHHHHHHH
Q psy6064 282 TGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPY-YEQ-N--ADAPFPAIFDRL-GWPVMKWLVTVGSLFALFT 356 (568)
Q Consensus 282 ~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~-~~~-~--~~~~~~~~~~~~-~~~~~~~iv~~~~~~~~~~ 356 (568)
++||+|||+|++|||+..++.++.++|++..+......++ ++. + .++|+.+.+... +.+++..++.+.++++.++
T Consensus 239 ~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (482)
T TIGR00907 239 MAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFF 318 (482)
T ss_pred HHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777666665554432 222 1 225888888764 5557778888889999999
Q ss_pred HHHHHhchhHHHHHHHHhcCccc--hhhhccCCCCccchHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHH
Q psy6064 357 AMFGAFFPLPRILYAMSRDGLLY--ERLSYVSSRTQTPLLSTALSGVITAVMSAVF-----KLDQLVDMMSIGTLLAYII 429 (568)
Q Consensus 357 ~~~~~~~~~sR~l~a~ardg~lP--~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~-----~~~~l~~~~~~~~~i~y~~ 429 (568)
+.++.+++.||++|+|||||.+| ++|+|+|||+|+|++|++++++++.++.++. .|+.++++.++..+++|.+
T Consensus 319 ~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~ 398 (482)
T TIGR00907 319 CAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVI 398 (482)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999888999999999999988766654 5899999999999999999
Q ss_pred HHHHHhhhccc
Q psy6064 430 VAICVLLLRYS 440 (568)
Q Consensus 430 ~~~~~l~~r~~ 440 (568)
+.++.+++|++
T Consensus 399 ~~~~~l~~~~~ 409 (482)
T TIGR00907 399 PIICKLAKGRN 409 (482)
T ss_pred HHHHHHHhcCC
Confidence 99888765544
No 27
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.2e-42 Score=366.87 Aligned_cols=380 Identities=20% Similarity=0.255 Sum_probs=294.8
Q ss_pred cChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h-------HHHH
Q psy6064 87 LGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V-------LNSD 148 (568)
Q Consensus 87 l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y-------~~~~ 148 (568)
+|+|+.+++.+|+|+|+|+|..++.+. +.+||..+++|++++++.++.++++ |+-+ | ..++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~-~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAA-LVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 588999999999999999999999865 6788999999999999999999999 5222 2 7899
Q ss_pred HHHHHHHHHHhhhhHHH-----HHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q psy6064 149 VKAISNQIDSLMGNAYQ-----KSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAII 223 (568)
Q Consensus 149 ~~~w~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~ 223 (568)
..+|.+++.+..+.+.. .+....++ ....+...++.+++++++.+|++|+|..+|+|+++.++.+..+..+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~ 155 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFG----WSSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAI 155 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC----CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987654433221 12222111 1122334567778888999999999999999998876544332222
Q ss_pred HhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHH
Q psy6064 224 VFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLI 303 (568)
Q Consensus 224 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~ 303 (568)
...+ ..+..++. +. +..+.++.+++.++..++|+|.|+|.+++++||+|||+|++|||++.++.+
T Consensus 156 ~~~~--~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~ 220 (410)
T PRK11021 156 WWAG--DIKPADIP------FP-------APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLL 220 (410)
T ss_pred HHHc--CCchhcCC------CC-------CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHH
Confidence 1111 11111110 00 012346778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCcC-CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhh
Q psy6064 304 VFVCYFSIAVVITMIVPYYEQN-ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERL 382 (568)
Q Consensus 304 ~~v~y~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f 382 (568)
+.++|++.+++.....|+++.. .+.|..++++...++++..++.+..+++.+++.++.+.+.+|++|+|||||.+|++|
T Consensus 221 ~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~ 300 (410)
T PRK11021 221 AGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYL 300 (410)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHH
Confidence 9999999998887666655443 456777777777666677788888899999999999999999999999999999999
Q ss_pred hccCCCCccchHHHHHHHHHHHHHHHH-----hcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCCcccccc
Q psy6064 383 SYVSSRTQTPLLSTALSGVITAVMSAV-----FKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVH 457 (568)
Q Consensus 383 ~~v~~r~~~P~~Ail~~~~i~~~~~~~-----~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~ 457 (568)
+|+| |+++|++|++++.+++.+..++ .+++.+.++.+...++.|.+.+++.++++++++
T Consensus 301 ~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~~--------------- 364 (410)
T PRK11021 301 ARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRY--------------- 364 (410)
T ss_pred Hhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------------
Confidence 9999 6799999999998887765543 368999999999999999999999999876431
Q ss_pred hhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHHHHhcCC
Q psy6064 458 VDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLD 537 (568)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~ 537 (568)
|.+|+++++.|.+++...+
T Consensus 365 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 383 (410)
T PRK11021 365 -------------------------------------------------------------RPLAVLGCLLCLLLLVMLG 383 (410)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccc
Q psy6064 538 VSTWVRFLVWLVLGMVVYFTYSIDHSKQK 566 (568)
Q Consensus 538 ~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 566 (568)
+..+... .+..+.+++.|++||++.|
T Consensus 384 ~~~~~~~---~~~~~~~~~~~~~~~~~~~ 409 (410)
T PRK11021 384 WKMLYAL---IMLALLWLFLPKRKTHLSR 409 (410)
T ss_pred HHHHHHH---HHHHHHHHHHHHhhhhhcc
Confidence 7776543 3345666777777666443
No 28
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=2.9e-42 Score=389.54 Aligned_cols=416 Identities=14% Similarity=0.123 Sum_probs=313.0
Q ss_pred ccccccccChhHHHHHh-hcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc--------c----chhh-
Q psy6064 80 APQLARVLGLIDLTMLG-VGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN--------P----NLRV- 144 (568)
Q Consensus 80 ~~~l~r~l~~~~~~~i~-i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~--------P----~~~Y- 144 (568)
+..-+|++|+++.+.+. +++|+|+|+|..++.+. ..+|++ .++.|++++++++++++|| | .|.|
T Consensus 71 ~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vv-g~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yi 149 (953)
T TIGR00930 71 PPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIV-GQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLI 149 (953)
T ss_pred CCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 33456899999999997 99999999999999987 456665 7899999999999999999 3 1222
Q ss_pred ------HHHHHHHHHHHHHHhhhhHHH-----HHHHHhccccCC----CCCcchhHHHHHHHHHHHHHHHhcchhHHHHH
Q psy6064 145 ------LNSDVKAISNQIDSLMGNAYQ-----KSMESLLPIKSS----FLSSYPDFIAPIFVAVITGLLSWGASESAKVN 209 (568)
Q Consensus 145 ------~~~~~~~w~~~l~~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~ 209 (568)
..|++.||..+++..++.+.. +++...+..... .......+++++++++++++|++|+|+.+|+|
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ak~q 229 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWENKAQ 229 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 678999999998877654433 333333211100 01112357888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCc
Q psy6064 210 NVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNP 289 (568)
Q Consensus 210 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP 289 (568)
.++++++++.++.+++.++..............-...+..+.....+.+..+|+..+...+++|+|+|++++++||+|||
T Consensus 230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP 309 (953)
T TIGR00930 230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP 309 (953)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 99999999988888776664221110000000000000001000112233347777777888999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCC-CC------------------CHHHH----HHH-hChhHHHHH
Q psy6064 290 KRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNA-DA------------------PFPAI----FDR-LGWPVMKWL 345 (568)
Q Consensus 290 ~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~------------------~~~~~----~~~-~~~~~~~~i 345 (568)
+|++|||++.++.+++++|++.++++..+.+.+.... +. |.... +.. .....+..+
T Consensus 310 ~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~~~~l 389 (953)
T TIGR00930 310 QKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSPFPPL 389 (953)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhhhHHH
Confidence 9999999999999999999999998888877543221 00 11111 111 111224578
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccc--hhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy6064 346 VTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLY--ERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGT 423 (568)
Q Consensus 346 v~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~ 423 (568)
+.++++++++++.++++++++|++|+|||||.+| ++|+|+|+|+++|++|+++++++++++.++.+++.+..+.+.++
T Consensus 390 I~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~f 469 (953)
T TIGR00930 390 ITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFF 469 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCcccccccCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEE
Q psy6064 424 LLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYL 503 (568)
Q Consensus 424 ~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (568)
+++|++++++++++|++++.
T Consensus 470 Ll~Y~lvnla~~~l~~~~~p------------------------------------------------------------ 489 (953)
T TIGR00930 470 LASYALINFSCFHASLLRSP------------------------------------------------------------ 489 (953)
T ss_pred HHHHHHHHHHHHHHhhccCC------------------------------------------------------------
Confidence 99999999999999876641
Q ss_pred ecCCCCCCCccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhccccccc
Q psy6064 504 SGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSK 564 (568)
Q Consensus 504 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 564 (568)
+.++.||. +.+++++++++.|+++|+..+ |...++++++++++|+++.+|+.+
T Consensus 490 ----~~RP~fk~-~~~~~sllG~l~c~~lmf~i~---w~~ali~~~i~~~ly~~~~~~~~~ 542 (953)
T TIGR00930 490 ----GWRPRFKY-YHWWLSLLGASLCCAIMFLIS---WWAALVAMVIALFLYKYVTYKKPD 542 (953)
T ss_pred ----CCCCcccc-chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCC
Confidence 22333444 567999999999999998764 566667777888888888777655
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=4.1e-42 Score=368.54 Aligned_cols=401 Identities=17% Similarity=0.245 Sum_probs=316.9
Q ss_pred cccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------cch--h---h-------
Q psy6064 85 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN-------PNL--R---V------- 144 (568)
Q Consensus 85 r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~-------P~~--~---Y------- 144 (568)
|++|+++++++++|+++|+|+|..++.++ ..+||+ .+++|+++++.+++.++++ |+. . |
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~-~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMA-AGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 78999999999999999999999999866 567886 7899999999999999998 642 1 3
Q ss_pred HHHHHHHHHHHHHHhhhhHHH-HHHHHhccccCCCC----CcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q psy6064 145 LNSDVKAISNQIDSLMGNAYQ-KSMESLLPIKSSFL----SSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT 219 (568)
Q Consensus 145 ~~~~~~~w~~~l~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~ 219 (568)
..++..+|.+|+++..+.... ...........+.. +.+...++.++++++..+|++|+|..+++|++++.+|+++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki~~ 159 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVP 159 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 789999999998876653332 11111111111111 1122345667777889999999999999999999999999
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCCCCCCCCc-cccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHH
Q psy6064 220 VAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGF-APFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAII 298 (568)
Q Consensus 220 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~ 298 (568)
++++++.++...+.+++.... +. +..+++ ....+.++..++...+|+|.|||.+++++||+|| +|++||++.
T Consensus 160 l~~~ii~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~ 232 (468)
T TIGR03810 160 LFVFIVIGIFAFKGDTFTNDF---WG---NANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATV 232 (468)
T ss_pred HHHHHHHHHHHhcHhhcCccc---cc---cccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHH
Confidence 888888776544333322110 00 000000 1223556778889999999999999999999998 799999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCC-CCC-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcC
Q psy6064 299 LSLLIVFVCYFSIAVVITMIVPYYEQNA-DAP-FPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDG 376 (568)
Q Consensus 299 ~s~~~~~v~y~l~~~~~~~~~p~~~~~~-~~~-~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg 376 (568)
.++.++.++|++.+++....+|++++.+ ++| ..++++...++++..++.+.++++.+++.++.+.+.+|++|+|||||
T Consensus 233 ~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg 312 (468)
T TIGR03810 233 IGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDK 312 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888877643 445 66777888888999999999999999999999999999999999999
Q ss_pred ccchhhhccCCCCccchHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCC
Q psy6064 377 LLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF-----KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDS 451 (568)
Q Consensus 377 ~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~-----~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~ 451 (568)
.+|++|+|+| |+|+|++|++++.+++.++.+.. .++.+.++++...++.|.+++++.+++|+|+++
T Consensus 313 ~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~-------- 383 (468)
T TIGR03810 313 LMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQ-------- 383 (468)
T ss_pred CccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 9999999999 77999999999998887655432 488999999999999999999999999877631
Q ss_pred cccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHH
Q psy6064 452 EVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIY 531 (568)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 531 (568)
+.+|+++ ++++.++.+.+++
T Consensus 384 --------------------------------------------------------~~~~~~~----~~~~~l~~~~~~~ 403 (468)
T TIGR03810 384 --------------------------------------------------------ERGRRKQ----LLIGLVALLYAVW 403 (468)
T ss_pred --------------------------------------------------------ccchhhh----HHHHHHHHHHHHH
Confidence 1223333 4788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhccccc
Q psy6064 532 LMINLDVSTWVRFLVWLVLGMVVYFTYSIDH 562 (568)
Q Consensus 532 l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 562 (568)
++...++.......+.+++|+.+|+..++++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 404 LIYAAGLKYLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998888888888888899999997654443
No 30
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=3.7e-41 Score=361.79 Aligned_cols=392 Identities=18% Similarity=0.197 Sum_probs=295.3
Q ss_pred ccCCCccccccccChhHHHHHhhccc-ccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh--h
Q psy6064 75 ERASDAPQLARVLGLIDLTMLGVGAT-LGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR--V 144 (568)
Q Consensus 75 ~~~~~~~~l~r~l~~~~~~~i~i~~~-ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~--Y 144 (568)
++.++++||||+++.++.++++++.+ ++.|++.+.+... ..+||+.+++|+++++..++.++++ |+-+ |
T Consensus 3 ~~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~-~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y 81 (475)
T TIGR03428 3 QRFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGY-GFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIY 81 (475)
T ss_pred hhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHH
Confidence 44788999999999999999999986 8999999999855 7899999999999999999999998 5322 2
Q ss_pred ---------HHHHHHHHHHHHHHhhhhHHHHHHHHhc--------c-c--cCCCC-C---cchhHHHHHHHHHHHHHHHh
Q psy6064 145 ---------LNSDVKAISNQIDSLMGNAYQKSMESLL--------P-I--KSSFL-S---SYPDFIAPIFVAVITGLLSW 200 (568)
Q Consensus 145 ---------~~~~~~~w~~~l~~~~~~~~~~~~~~~~--------~-~--~~~~~-~---~~~~~ia~~~i~~~~~ln~~ 200 (568)
..++..||.+++++....+........+ . . +..+. + .+..+++.+++++++.+|++
T Consensus 82 ~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~ 161 (475)
T TIGR03428 82 QWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCI 161 (475)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999998866443332221111 0 0 11111 1 12346777788889999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHh
Q psy6064 201 GASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIA 280 (568)
Q Consensus 201 g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~ 280 (568)
|+|..+++|++..+++++.++++++.++...+.+ ..+++.+.. ++..+.....++.+....+|+|.|+|.++
T Consensus 162 g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~-----~~~~f~~~~---~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 233 (475)
T TIGR03428 162 GVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRG-----PGVVFDTSV---TGASPGYYGAFLVSGLMAAYVMVGFGSAG 233 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeeecCC---CCCCccHHHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999988777776665443211 111221111 11112223457778888999999999999
Q ss_pred hhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCc--CCCCCHHHHHHHh-ChhHHHHHHHHHHHHHHHHH
Q psy6064 281 TTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQ--NADAPFPAIFDRL-GWPVMKWLVTVGSLFALFTA 357 (568)
Q Consensus 281 ~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~-~~~~~~~iv~~~~~~~~~~~ 357 (568)
+++||+|||+|++|||+..++.++.++|++..++.....|+.+. .++++...++.+. +.+++ ..+...++++.+++
T Consensus 234 ~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~-~~~~~~~~i~~~~~ 312 (475)
T TIGR03428 234 ELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWG-TVLLVDVAIAILVC 312 (475)
T ss_pred HHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888877765321 1222344444443 44444 44556667889999
Q ss_pred HHHHhchhHHHHHHHHhcCccc--hhhhccCCCCccchHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHH
Q psy6064 358 MFGAFFPLPRILYAMSRDGLLY--ERLSYVSSRTQTPLLSTALSGVITAVMSAVF-----KLDQLVDMMSIGTLLAYIIV 430 (568)
Q Consensus 358 ~~~~~~~~sR~l~a~ardg~lP--~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~-----~~~~l~~~~~~~~~i~y~~~ 430 (568)
.++.+.+.||++|++||||.+| ++|+|+|||+++|++|+++.++++.++.++. .|+.+.+++++..+++|.++
T Consensus 313 ~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~ 392 (475)
T TIGR03428 313 TLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLV 392 (475)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 5899999999999999999999998777653 48899999999999999999
Q ss_pred HHHHhhhcccCCcccccccCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhh
Q psy6064 431 AICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNI 489 (568)
Q Consensus 431 ~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (568)
.++.+.+|+|+-++ + ++.+++-++.+++.+..++++.++|.++..+
T Consensus 393 ~~~~l~~~~~~~~~-~------------~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v 438 (475)
T TIGR03428 393 TVPLLLRRLRGWPR-G------------DQTDPAGLFSLGRWGLPVNILAVVYGALMVV 438 (475)
T ss_pred HHHHHHHHHhccCC-c------------cCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 99888877653100 0 0012333577778888999999999888433
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=5.6e-37 Score=329.55 Aligned_cols=342 Identities=16% Similarity=0.198 Sum_probs=246.6
Q ss_pred cccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHH-HHhhhcc-------cchh----h-------H
Q psy6064 85 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVVKN-------PNLR----V-------L 145 (568)
Q Consensus 85 r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~-~~~a~~~-------P~~~----Y-------~ 145 (568)
||++.++++++.+..+++..- .+ ..+..|++.++.|++++++. ++.++++ |+-+ | .
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~--~~---~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRG--LP---AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhc--ch---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 569999999999887754322 12 33567899999999999866 4788887 5222 2 8
Q ss_pred HHHHHHHHHHHHHhhhhHHHH-H---HHHhcccc---CCCCCcch---hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q psy6064 146 NSDVKAISNQIDSLMGNAYQK-S---MESLLPIK---SSFLSSYP---DFIAPIFVAVITGLLSWGASESAKVNNVLTFA 215 (568)
Q Consensus 146 ~~~~~~w~~~l~~~~~~~~~~-~---~~~~~~~~---~~~~~~~~---~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~ 215 (568)
.++..+|.+|+++.+..+... . ........ .+..+.+. ..++++++++++.+|++|+|..++++++...+
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~ 155 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIV 155 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 999999999998866443221 1 11111111 01111111 13556666778899999999999999987554
Q ss_pred -HHHHHHHHHhhhcccccC-C--CCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCccc
Q psy6064 216 -NLGTVAIIVFSGLFRLNP-A--NWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKR 291 (568)
Q Consensus 216 -~~~~l~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r 291 (568)
++++++++++.++..... . +........+ ++ + .++.++..+ ...+|+|.|+|.++..+||+|||+|
T Consensus 156 ~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~----p~---~--~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r 225 (474)
T TIGR03813 156 GTIIPAAILVILGISYLLTGGESQIPLRWDDAF----PD---F--TNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDK 225 (474)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhC----CC---c--cccccHHHH-HHHHHHHhchhHhHHHHHhccCccc
Confidence 455555555555442111 1 1000000001 00 0 022223222 2457899999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCH----HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHH
Q psy6064 292 NIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPF----PAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPR 367 (568)
Q Consensus 292 ~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR 367 (568)
++|||++.++.++.++|++.++++..++|+++...+++. .+.++..+.++...++.+..+++.+++.++.+.+.+|
T Consensus 226 ~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR 305 (474)
T TIGR03813 226 NYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSS 305 (474)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887654443 3344555667788888888889999999999999999
Q ss_pred HHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh--------cHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy6064 368 ILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF--------KLDQLVDMMSIGTLLAYIIVAICVLLLRY 439 (568)
Q Consensus 368 ~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~--------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~ 439 (568)
++|++||||.+|++|+|+| |+|+|++|++++++++.++.++. .++.+.++++...++.|++++++.+++|+
T Consensus 306 ~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~ 384 (474)
T TIGR03813 306 GMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRY 384 (474)
T ss_pred HHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 78999999999998765433321 37889999999999999999999999998
Q ss_pred cCC
Q psy6064 440 SGD 442 (568)
Q Consensus 440 ~~~ 442 (568)
|+|
T Consensus 385 ~~~ 387 (474)
T TIGR03813 385 SQP 387 (474)
T ss_pred cCC
Confidence 876
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-36 Score=321.61 Aligned_cols=353 Identities=31% Similarity=0.457 Sum_probs=288.8
Q ss_pred CCccccccccChhH-HHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h-
Q psy6064 78 SDAPQLARVLGLID-LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V- 144 (568)
Q Consensus 78 ~~~~~l~r~l~~~~-~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y- 144 (568)
.++++++|+++.++ ...++++.++|.|+|...+..+.. + +...++|++++++..+.++++ |+.+ |
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~ 82 (466)
T COG0531 5 MMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYA 82 (466)
T ss_pred ccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeh
Confidence 45567889999999 999999999999999999986633 3 555556999999999988887 5333 2
Q ss_pred ------HHHHHHHHHHHHHHhhhhHHHHHHHHhc-cccCC----CCC--cchhHHHHHHHHHHHHHHHhcchhHHHHHHH
Q psy6064 145 ------LNSDVKAISNQIDSLMGNAYQKSMESLL-PIKSS----FLS--SYPDFIAPIFVAVITGLLSWGASESAKVNNV 211 (568)
Q Consensus 145 ------~~~~~~~w~~~l~~~~~~~~~~~~~~~~-~~~~~----~~~--~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~ 211 (568)
..++..+|.+++.+....+......... ....+ ... .....++.+++++.+.+|++|+|..++++.+
T Consensus 83 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 83 KRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5679999999998887665543332221 11111 111 3445788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCccc
Q psy6064 212 LTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKR 291 (568)
Q Consensus 212 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r 291 (568)
...++++.++++++.++...+.++.+... ...+ ......+++.++...+|+|.|+|.+++++||+|||+|
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r 232 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFSNGNLFA-----PFNP-----GGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR 232 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCC-----Cccc-----ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccc
Confidence 99999999999999988876654321111 0000 0112336888999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCC---CCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q psy6064 292 NIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNAD---APFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRI 368 (568)
Q Consensus 292 ~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 368 (568)
++||+++.++..+.++|++..++.....|+++.... .|..+.+....+.++..++.+..+++.+++.++...+.+|.
T Consensus 233 ~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~ 312 (466)
T COG0531 233 TIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRV 312 (466)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998655443 68888888887789999999999999999999999999999
Q ss_pred HHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy6064 369 LYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF-----KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGD 442 (568)
Q Consensus 369 l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~-----~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~ 442 (568)
+++|||||.+|++|+|+|+|+++|++++++..+++.++.+.. .++.+.++++...++.|.+..++.+++|++++
T Consensus 313 ~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~ 391 (466)
T COG0531 313 LYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKP 391 (466)
T ss_pred HHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999998999999999999999333332 36899999999999999999999999999876
No 33
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.5e-35 Score=319.36 Aligned_cols=344 Identities=17% Similarity=0.151 Sum_probs=243.2
Q ss_pred ccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHH-HHHhhhcc-------c-chh--h--------
Q psy6064 84 ARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVT-SLFSVVKN-------P-NLR--V-------- 144 (568)
Q Consensus 84 ~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~-~~~~a~~~-------P-~~~--Y-------- 144 (568)
+||++.++++++.++.+.+ ++..+. .+..|++.+..|++++++ .++.++++ | +-+ |
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~~---~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYPT---FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5789999999999988753 343332 256688888888888776 56778877 4 222 2
Q ss_pred -HHHHHHHHHHHHHHhhhhHHHH-HHHHhc--cccCCCCC---cchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q psy6064 145 -LNSDVKAISNQIDSLMGNAYQK-SMESLL--PIKSSFLS---SYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANL 217 (568)
Q Consensus 145 -~~~~~~~w~~~l~~~~~~~~~~-~~~~~~--~~~~~~~~---~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~ 217 (568)
..++..+|.+|+...++.+... ...... ....+..+ ....+..++++++++++|++|+|..++++++..++.+
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~ 157 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGI 157 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 6788888888887765433221 111111 01111111 1122345567778899999999999999998765444
Q ss_pred HH-HHHHHhhhcccccCCCC-cccccCCCCCCCCCCCCccccc-hhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchh
Q psy6064 218 GT-VAIIVFSGLFRLNPANW-TIRREAIPPGVRGGSGGFAPFG-VNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIP 294 (568)
Q Consensus 218 ~~-l~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP 294 (568)
+. ++++++.+.......+. .... +.+++.|.. ..+.+..+....|+|.|+|.+++++||+|||+|++|
T Consensus 158 ~i~~~ili~l~~~~~~~g~~~~~~~---------~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~P 228 (507)
T TIGR00910 158 LIPAFILFALAAAYFHGGAPIAIEI---------DSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYP 228 (507)
T ss_pred HHHHHHHHHHHHHHHhCCCccccCC---------cHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCccccc
Confidence 43 44444434332211111 0000 000111110 012344455568999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHH----HHhC--hhHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q psy6064 295 LAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIF----DRLG--WPVMKWLVTVGSLFALFTAMFGAFFPLPRI 368 (568)
Q Consensus 295 ~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~----~~~~--~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 368 (568)
||++.+++++.++|.+..+++...+|+++...+++..+.+ ...+ .++...++.+.++++.+++.++.+++.||+
T Consensus 229 rAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~ 308 (507)
T TIGR00910 229 LAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRG 308 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888988776544443333 3333 256667888888999999999999999999
Q ss_pred HHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh---------cHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy6064 369 LYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF---------KLDQLVDMMSIGTLLAYIIVAICVLLLRY 439 (568)
Q Consensus 369 l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~---------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~ 439 (568)
++++||||.+|++|+|+| |+|+|++|++++++++.++.++. .++.+.++++...++.|++..++.+++|+
T Consensus 309 l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~ 387 (507)
T TIGR00910 309 MFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLIL 387 (507)
T ss_pred HHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 78999999999999987654331 35667788999999999999999999999
Q ss_pred cCC
Q psy6064 440 SGD 442 (568)
Q Consensus 440 ~~~ 442 (568)
|+|
T Consensus 388 k~p 390 (507)
T TIGR00910 388 KHP 390 (507)
T ss_pred hcC
Confidence 887
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=3.6e-36 Score=319.87 Aligned_cols=342 Identities=28% Similarity=0.451 Sum_probs=276.8
Q ss_pred cChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHH-HHhhhcc-------cchh----h-------HHH
Q psy6064 87 LGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVVKN-------PNLR----V-------LNS 147 (568)
Q Consensus 87 l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~-~~~a~~~-------P~~~----Y-------~~~ 147 (568)
+|+++.++++++.++|+|++..+ ..+.+|+..+++|++++++. ++.+++| |+-+ | ..+
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~---~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP---AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH---HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 68999999999999999999877 33568999999999998888 7888888 4222 2 788
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH-Hhc-cc-cCCC--CCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-HHHH
Q psy6064 148 DVKAISNQIDSLMGNAYQKSME-SLL-PI-KSSF--LSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANL-GTVA 221 (568)
Q Consensus 148 ~~~~w~~~l~~~~~~~~~~~~~-~~~-~~-~~~~--~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~-~~l~ 221 (568)
+..+|.+++++....+...... ..+ .. .... .+.+..+++++++++++.+|++|.|..+|+++++..+++ ..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~ 157 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLL 157 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhh
Confidence 9999999998887554432222 211 11 1111 122344678889999999999999999999999999999 5777
Q ss_pred HHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHH
Q psy6064 222 IIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSL 301 (568)
Q Consensus 222 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~ 301 (568)
++++.++...+.+.... .. ...+.+.|.++.+++.++...+|+|.|+|++++++||+|| |++|||+..++
T Consensus 158 ~~i~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~ 227 (426)
T PF13520_consen 158 VLIILGIVSFSFSGFNS-LS-------FSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISI 227 (426)
T ss_dssp HHHHHHHHSTTCCHHH------------SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHH
T ss_pred hheeEEEeeeccccccc-cc-------ccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecccch
Confidence 77777777665432211 10 0001123445556888999999999999999999999877 89999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcCCCC----CHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCc
Q psy6064 302 LIVFVCYFSIAVVITMIVPYYEQNADA----PFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGL 377 (568)
Q Consensus 302 ~~~~v~y~l~~~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~ 377 (568)
+++.++|++.++++....|+++....+ +....++..+++++..++.+..+++.+++.++.+.+.+|++++|||||.
T Consensus 228 ~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~ 307 (426)
T PF13520_consen 228 IIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGV 307 (426)
T ss_dssp HHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccc
Confidence 999999999999999999998776543 3556667777789999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy6064 378 LYERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAICVLLLRYSGD 442 (568)
Q Consensus 378 lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~ 442 (568)
+|++|+|+| |+|+|++|+++.++++.++.++. +++.+.++.++...+.|.+..++.+++|+|++
T Consensus 308 lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 308 LPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRP 377 (426)
T ss_dssp SSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred hhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999 99999999999999997665432 57899999999999999999999999999987
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=5.1e-39 Score=346.03 Aligned_cols=349 Identities=24% Similarity=0.400 Sum_probs=275.6
Q ss_pred HHHHhhcccccchhhhhhhHhHhhhcCh-hHHHHHHHHHHHHHHhhhcc-------cchh----h-------HHHHHHHH
Q psy6064 92 LTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVVKN-------PNLR----V-------LNSDVKAI 152 (568)
Q Consensus 92 ~~~i~i~~~ig~gif~~~g~v~~~~~Gp-~~~~~~li~~v~~~~~a~~~-------P~~~----Y-------~~~~~~~w 152 (568)
++++++++++|+|+|...+... ..+|| +.++++++++++.++.+.++ |+-+ | ..|+..||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~-~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAI-AAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHH-HhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 4567899999999999999865 67777 68999999999999999998 4222 2 78999999
Q ss_pred HHHHHHhhhhHHHHHHHHhc-cccCCCCCcc-hh----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhh
Q psy6064 153 SNQIDSLMGNAYQKSMESLL-PIKSSFLSSY-PD----FIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFS 226 (568)
Q Consensus 153 ~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~----~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~ 226 (568)
.+++.+++..+......+.+ .......+.+ .+ +++.++++++..+|++|+|..++++.++..++++.++.+++.
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~ 160 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIV 160 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhh
Confidence 99998888655543222222 1110011111 22 357888889999999999999999999999999999988888
Q ss_pred h-ccc-ccCCCCc-----ccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064 227 G-LFR-LNPANWT-----IRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299 (568)
Q Consensus 227 ~-~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~ 299 (568)
+ +.. .+.++.+ .+.. ......++..+....++.+++.++..++|+|.|+|+++.++||+|||+|++|||+..
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~ 239 (478)
T PF00324_consen 161 GVIILFFGGGPSNGRYWGDPGS-FANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLL 239 (478)
T ss_pred cccccccccCCCcccccccccc-cccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhh
Confidence 8 321 1211111 1111 000000110011122478899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcCCC------CCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q psy6064 300 SLLIVFVCYFSIAVVITMIVPYYEQNAD------APFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMS 373 (568)
Q Consensus 300 s~~~~~v~y~l~~~~~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~a 373 (568)
++++++++|++...+....+|+++.... +|+..+.+..++++...++++..+++++++.++.++++||++++||
T Consensus 240 ~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama 319 (478)
T PF00324_consen 240 SVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMA 319 (478)
T ss_pred hhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhh
Confidence 9999999999999999999998875421 4888899999999999999999999999999999999999999999
Q ss_pred hcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhc------HHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy6064 374 RDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFK------LDQLVDMMSIGTLLAYIIVAICVLLLRYSGD 442 (568)
Q Consensus 374 rdg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~------~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~ 442 (568)
|||.+|+++.+.|+|+|+|++|++++.+++.+..+... ++.+.+++++..++.|.+.+++.+++|++.+
T Consensus 320 ~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~ 394 (478)
T PF00324_consen 320 RDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFK 394 (478)
T ss_pred hhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhc
Confidence 99999977777777999999999999999988776542 5677889999999999999999998888754
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=2.5e-34 Score=310.40 Aligned_cols=349 Identities=13% Similarity=0.169 Sum_probs=239.8
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHH-HHHhhhcc-------cc-hh--h------
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVT-SLFSVVKN-------PN-LR--V------ 144 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~-~~~~a~~~-------P~-~~--Y------ 144 (568)
++||+||++++++++++.++|.+.. +. ....+||+.++.|++++++ .++.++++ |+ -+ |
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~~~---~~-~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~ 79 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFANS---PR-AFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKS 79 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCCch---HH-HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 3478999999999999999997632 21 2356888877777777765 56788877 74 23 3
Q ss_pred ---HHHHHHHHHHHHHHhhhhHHH-HH--H--HHh-cccc--C----CCCCcc--hhHHHHHHHHHHHHHHHhcchhHHH
Q psy6064 145 ---LNSDVKAISNQIDSLMGNAYQ-KS--M--ESL-LPIK--S----SFLSSY--PDFIAPIFVAVITGLLSWGASESAK 207 (568)
Q Consensus 145 ---~~~~~~~w~~~l~~~~~~~~~-~~--~--~~~-~~~~--~----~~~~~~--~~~ia~~~i~~~~~ln~~g~~~~~~ 207 (568)
..++..+|..+.+++...... .. . ... +... . .....+ ...+++..+++++.+|.+|+|..++
T Consensus 80 ~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~ 159 (496)
T PRK15238 80 VGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAK 159 (496)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 677777777665554322111 00 0 000 1110 0 001111 1244556666789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh-ccc-ccCCCCcccccCCCCCCCC-CCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhh
Q psy6064 208 VNNVLTFANLGTVAIIVFSG-LFR-LNPANWTIRREAIPPGVRG-GSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGE 284 (568)
Q Consensus 208 ~~~~~~~~~~~~l~~~~i~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~ 284 (568)
++++.+.+++...+++++.. ... ....+...+.. +.++.+ ...++. .+ .+++.++..+.|+|.|+|.+++++|
T Consensus 160 i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~f~G~e~~~~~a~ 235 (496)
T PRK15238 160 VTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIG--VSSFVTSPNPAYQ-SP-IAVLSFVVFAIFAYGGIEAVGGLVD 235 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc--HhhcccCCCCccc-cc-hHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99998877765433222221 111 11111111100 000100 001111 12 3477888899999999999999999
Q ss_pred hhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCC-------CCHHHHHHHh-----------------Chh
Q psy6064 285 ETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNAD-------APFPAIFDRL-----------------GWP 340 (568)
Q Consensus 285 E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~-------~~~~~~~~~~-----------------~~~ 340 (568)
|+|||+|++|||+..++.++.++|++..+.+....|+++...+ .++. ..+.. .+.
T Consensus 236 E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~ 314 (496)
T PRK15238 236 KTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGV 314 (496)
T ss_pred hccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhH
Confidence 9999999999999999999999999998888877776655421 1221 11111 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhc---------
Q psy6064 341 VMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFK--------- 411 (568)
Q Consensus 341 ~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~--------- 411 (568)
+...++++..+++.+++.++..++.+|.++..+|||.+|++|+|+| |+|+|++|++++++++.++.+...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~ 393 (496)
T PRK15238 315 WFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAF 393 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 4555778888999999999999999999999999999999999999 889999999999988776543321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy6064 412 LDQLVDMMSIGTLLAYIIVAICVLLLRYS 440 (568)
Q Consensus 412 ~~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 440 (568)
|+.+.+++++..++.|++++++++++||+
T Consensus 394 f~~l~~l~~~~~li~y~~~~~a~i~~r~~ 422 (496)
T PRK15238 394 FNILTLMANVSMTLPYLFLAGAFPFFKKK 422 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999998763
No 37
>KOG2082|consensus
Probab=99.89 E-value=4e-21 Score=199.85 Aligned_cols=225 Identities=18% Similarity=0.287 Sum_probs=181.3
Q ss_pred HHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHH------HhCh
Q psy6064 266 AAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFD------RLGW 339 (568)
Q Consensus 266 ~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~------~~~~ 339 (568)
+..-+-+.+|.-+.++.+++.|||+|++|.+.+.+++.+..+|+...+.+..++...-+.. -+.+... ...+
T Consensus 416 vgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRD--KfG~sv~g~lVva~laW 493 (1075)
T KOG2082|consen 416 VGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRD--KFGQSVGGNLVVATLAW 493 (1075)
T ss_pred HHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhh--hhhhhccCcEEEEEecC
Confidence 3444568899999999999999999999999999999999999999999998876332211 1111111 0111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccc--hhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHH
Q psy6064 340 PVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLY--ERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVD 417 (568)
Q Consensus 340 ~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~ 417 (568)
+-.+++.++.+++++|+.+.++.+++|++++.|||+.+| +.|+|.+ ++|.|.+|++++.+++.+.+++++++.+..
T Consensus 494 -PsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iAp 571 (1075)
T KOG2082|consen 494 -PSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAP 571 (1075)
T ss_pred -CCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHH
Confidence 134678899999999999999999999999999999999 9999999 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcccccccCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhccccccc
Q psy6064 418 MMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSS 497 (568)
Q Consensus 418 ~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (568)
+.+.+++++|.++++++.+.-.-+-
T Consensus 572 ilsmFFLMCY~fVNLaCavqtLLrt------------------------------------------------------- 596 (1075)
T KOG2082|consen 572 ILSMFFLMCYLFVNLACAVQTLLRT------------------------------------------------------- 596 (1075)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcC-------------------------------------------------------
Confidence 9999999999999998877655432
Q ss_pred ceEEEEecCCCCCCCccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhccccc
Q psy6064 498 NQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDH 562 (568)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 562 (568)
+++++.||.. ++.+..+++..|+.+|+.. .|...++.+.+..++|.+-.+|-
T Consensus 597 ---------PnWRPRfkyy-HW~LSflG~sLC~~iMF~~---SWyyAlvAm~~a~~IYKYiEykG 648 (1075)
T KOG2082|consen 597 ---------PNWRPRFKYY-HWSLSFLGASLCLAIMFIS---SWYYALVAMLIAGVIYKYIEYKG 648 (1075)
T ss_pred ---------CCCCccchhh-hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcc
Confidence 0344445543 4578999999999999964 56666666777888887555543
No 38
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.88 E-value=6.2e-21 Score=199.70 Aligned_cols=319 Identities=15% Similarity=0.123 Sum_probs=220.7
Q ss_pred HHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cc------hhh-----HHHHHHHHHH
Q psy6064 93 TMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PN------LRV-----LNSDVKAISN 154 (568)
Q Consensus 93 ~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~------~~Y-----~~~~~~~w~~ 154 (568)
+++.+|+++|+|++..++..+ ..+++..++..+++++.+.+.++++ |+ +.+ ..++..+|.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 356789999999999999865 4555555566677777777777776 51 221 6677777776
Q ss_pred HHHHhhhhHH-----HHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy6064 155 QIDSLMGNAY-----QKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLF 229 (568)
Q Consensus 155 ~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 229 (568)
++........ ..++...+.... ....+..+.++++++++..+|..|.|..+|+|++++..++..++++++.++.
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~ 160 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYF-GFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLP 160 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6543221111 122222221100 1122345667778888889999999999999999999999998888887776
Q ss_pred cccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhh-HHhhhhhhhcCcccchhhHHHHHHHHHHHHH
Q psy6064 230 RLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFD-GIATTGEETRNPKRNIPLAIILSLLIVFVCY 308 (568)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e-~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y 308 (568)
+.+.+++.+.. ..+.++.++..++...+++| |+| .++.+.+|.||++|++||++..+..++.++|
T Consensus 161 ~~~~~~~~~~~-------------~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY 226 (381)
T TIGR00837 161 HVKGDLLLDVA-------------LDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLY 226 (381)
T ss_pred hccHHHHhcCc-------------cccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 65544432210 00224556777778888888 675 5888899998789999999999999999999
Q ss_pred HHHHHHHhhhccCCCcCC-------CCCHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccch
Q psy6064 309 FSIAVVITMIVPYYEQNA-------DAPFPAIFDR-LGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYE 380 (568)
Q Consensus 309 ~l~~~~~~~~~p~~~~~~-------~~~~~~~~~~-~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~ 380 (568)
++..++....+|.+++.+ .++..+.++. .++++...++.++..+++.++.++...+.++. +++
T Consensus 227 ~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~ 297 (381)
T TIGR00837 227 ILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LAD 297 (381)
T ss_pred HHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Confidence 999999999999887641 1345556655 46677888999999999999999988887743 445
Q ss_pred hhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy6064 381 RLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLL 437 (568)
Q Consensus 381 ~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~ 437 (568)
.|++.+++++ |..+.+++.+..+++....+-..+..+...+....+....+..+..
T Consensus 298 ~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~ 353 (381)
T TIGR00837 298 LFKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLA 353 (381)
T ss_pred HhCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554434 7788888888888888777655555555555444444444433333
No 39
>KOG1288|consensus
Probab=99.86 E-value=7.4e-20 Score=189.26 Aligned_cols=249 Identities=17% Similarity=0.193 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCccccc-----------------------
Q psy6064 185 FIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRRE----------------------- 241 (568)
Q Consensus 185 ~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~----------------------- 241 (568)
+.+..+..++..+.++|....+|..++..++....+..+.+..++.+..++-.+...
T Consensus 199 ly~t~vl~l~~~vc~lGsalfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~d 278 (945)
T KOG1288|consen 199 LYTTLVLALCLIVCLLGSALFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMD 278 (945)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhh
Confidence 556677778888999999999999998887776666666666555443322211000
Q ss_pred CCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy6064 242 AIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPY 321 (568)
Q Consensus 242 ~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~ 321 (568)
+...+... +....+...|-..+...+-+.+|.-+.++|++|.|+|.|++||+.+.++..+.++|++....+....|+
T Consensus 279 NL~~~yt~---dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r 355 (945)
T KOG1288|consen 279 NLGSHYTE---DYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPR 355 (945)
T ss_pred hhhhhhcc---cccCCCceehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcch
Confidence 00001000 111233445666667777788999999999999999999999999999999999999999999999988
Q ss_pred CCcCCCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccc--hhhhccCCCCccchHHHHHH
Q psy6064 322 YEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLY--ERLSYVSSRTQTPLLSTALS 399 (568)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~v~~r~~~P~~Ail~~ 399 (568)
..+.++-.+.... .....++.+++..+.+.+..+.+.++||++.++|||..+| -.|+|...+.+.|+.|+.++
T Consensus 356 ~~Lq~dy~v~~~i-----sl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vt 430 (945)
T KOG1288|consen 356 TLLQNDYDVMMHI-----SLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVT 430 (945)
T ss_pred HHhhhchhheeec-----cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHH
Confidence 7666653222211 1223566778888888999999999999999999999999 66889888899999999999
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy6064 400 GVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSG 441 (568)
Q Consensus 400 ~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 441 (568)
.++..+..+.+++|.+..+.++.++++|..++++++.++..-
T Consensus 431 w~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~Leiss 472 (945)
T KOG1288|consen 431 WLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEISS 472 (945)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999998864
No 40
>KOG2083|consensus
Probab=99.77 E-value=3.6e-17 Score=168.56 Aligned_cols=406 Identities=18% Similarity=0.215 Sum_probs=275.4
Q ss_pred cccccccChhHHHHH-hhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------------------
Q psy6064 81 PQLARVLGLIDLTML-GVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN------------------- 139 (568)
Q Consensus 81 ~~l~r~l~~~~~~~i-~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~------------------- 139 (568)
.+-+-++|+|+.+.. ++-++.|.=+|...+++. .++|.+ .++...++.++...++++-
T Consensus 24 ~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wiv-gqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis 102 (643)
T KOG2083|consen 24 TKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIV-GQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLIS 102 (643)
T ss_pred cCCceEEeeeehhhhhhhHHHHHHHHhhhhhhee-ecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEE
Confidence 344568999998887 666778888999999977 667765 5555666666777776665
Q ss_pred ----cchhhHHHHHHHHHHHHHHhhh-hHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Q psy6064 140 ----PNLRVLNSDVKAISNQIDSLMG-NAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTF 214 (568)
Q Consensus 140 ----P~~~Y~~~~~~~w~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~ 214 (568)
|+++=..|.+.++++.++.... ..+++.....+. .+...-.+-++.+.++++..+|..|++|..|+|.++..
T Consensus 103 ~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~---~~s~~~i~gi~~vt~~ill~i~~ag~~w~~k~q~~ll~ 179 (643)
T KOG2083|consen 103 RSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFE---TESKEMIDGIGSVTVLILLAINVAGVEWEAKLQIVLLL 179 (643)
T ss_pred ecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH---hccHHHhcchhHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 2211022222222222211110 011122211111 11111122378888888999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCC--CCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccc
Q psy6064 215 ANLGTVAIIVFSGLFRLNPA--NWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRN 292 (568)
Q Consensus 215 ~~~~~l~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~ 292 (568)
+.++.+.-+++..++..... .+.....+.+.. +-...+.| + ..|+..+...+-+.+|.-+.++++++.|+|+++
T Consensus 180 il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~--n~~~~~~~-~-~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~ 255 (643)
T KOG2083|consen 180 ILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVE--NLNPDIDP-G-YTFFSVFAVFFPAATGILAGANISGDLKDPQKA 255 (643)
T ss_pred HHHHHHHHhhhhhccChhhhcccccccchhhccc--CCCCCcCC-C-CceEeeeeeecchhhhhhccccccCCCCCchhh
Confidence 99888888888777644310 111111111110 00011222 2 237777777888999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcC-----CCC----CHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHHh
Q psy6064 293 IPLAIILSLLIVFVCYFSIAVVITMIVPYYEQN-----ADA----PFPAIFDRL-GWPVMKWLVTVGSLFALFTAMFGAF 362 (568)
Q Consensus 293 iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~-----~~~----~~~~~~~~~-~~~~~~~iv~~~~~~~~~~~~~~~~ 362 (568)
+|++.+.++.....+|+.+..-...+.-.+... ... .+.+-++.. .-......+..+...+.+++..+++
T Consensus 256 IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalssl 335 (643)
T KOG2083|consen 256 IPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSL 335 (643)
T ss_pred cccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHH
Confidence 999999999999999998887766655433211 111 222222221 1123445677888888888899999
Q ss_pred chhHHHHHHHHhcCccc--hhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy6064 363 FPLPRILYAMSRDGLLY--ERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYS 440 (568)
Q Consensus 363 ~~~sR~l~a~ardg~lP--~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 440 (568)
..++++++++++|+..| .+|+|-.++++.|.++..++...+.....+++.+.+..+.+...+.+|.....+.+.-+..
T Consensus 336 Vsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~aSl~ 415 (643)
T KOG2083|consen 336 VSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHASLA 415 (643)
T ss_pred HhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhhhhc
Confidence 99999999999999999 7789999999999999999999999999999999999999999999999999999987777
Q ss_pred CCcccccccCCcccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccch
Q psy6064 441 GDEVVVETCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPL 520 (568)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 520 (568)
+++ ..+++|+.+. +|
T Consensus 416 ~s~----------------------------------------------------------------~wRp~f~~yn-~w 430 (643)
T KOG2083|consen 416 ISE----------------------------------------------------------------GWRPSFKFYN-AW 430 (643)
T ss_pred ccc----------------------------------------------------------------ccCchhhhHH-HH
Confidence 752 2344455443 67
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhccccc
Q psy6064 521 IPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDH 562 (568)
Q Consensus 521 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 562 (568)
...++.+.|..+|+... |...++-...-...|++.+++.
T Consensus 431 VSllGalKOG~ImFli~---w~aaLi~~~~~~~Ly~yv~~~~ 469 (643)
T KOG2083|consen 431 VSLLGALLCLAIMFLIS---WWAALITFSVLSALYLYVGRRK 469 (643)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhcC
Confidence 88888889988888554 4444443444455555444443
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.73 E-value=6.1e-15 Score=151.24 Aligned_cols=317 Identities=14% Similarity=0.087 Sum_probs=231.9
Q ss_pred hcccccchhhhhhhHhHhhhcCh-h-HHHHHHHHHHHHHHhhhcc-cch----hh-------HHHHHHHHHHHHHHhhhh
Q psy6064 97 VGATLGVGVYVLAGSVARNQAGP-S-VVISFAIAAVTSLFSVVKN-PNL----RV-------LNSDVKAISNQIDSLMGN 162 (568)
Q Consensus 97 i~~~ig~gif~~~g~v~~~~~Gp-~-~~~~~li~~v~~~~~a~~~-P~~----~Y-------~~~~~~~w~~~l~~~~~~ 162 (568)
++.-+|+|.+..++.+..+.|.. . ++++|+++++..-+.+++- |.. .| ..++..+|..++..--..
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iGP~~ 84 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVGGGYDSLSARIGKVFGILFTVILYLTIGPLF 84 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecCCCHHHHHHHhChHHHHHHHHHHHHHHHhch
Confidence 34448899999999988666555 2 6889999999888887765 422 12 677777777775321111
Q ss_pred -----HHHHHHHHhccccCC-CCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q psy6064 163 -----AYQKSMESLLPIKSS-FLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANW 236 (568)
Q Consensus 163 -----~~~~~~~~~~~~~~~-~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~ 236 (568)
+...|-.+..+.... .......+..+++..+...+|+.+.|...+++++++-++++.++.+++.++.....+ .
T Consensus 85 aiPRtaa~s~e~~i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g~-~ 163 (378)
T TIGR00796 85 AIPRTATVSFEMGIAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWPAGP-I 163 (378)
T ss_pred hhhHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCC-c
Confidence 111111111111111 001122245556666667799999999999999999999999999999999864322 1
Q ss_pred cccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhh-------hhhHHhhhhh-hhcCcccchhhHHHHHH-HHHHHH
Q psy6064 237 TIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFV-------GFDGIATTGE-ETRNPKRNIPLAIILSL-LIVFVC 307 (568)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~-------G~e~~~~~a~-E~knP~r~iP~ai~~s~-~~~~v~ 307 (568)
..+. +... .+ ..+..++.-..++++ |+-.+..+.+ |.|||+|..|+.+..++ ..+.+.
T Consensus 164 ~~~~-----------~~~~-~~-~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~ 230 (378)
T TIGR00796 164 LAAS-----------GAYA-SQ-QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLA 230 (378)
T ss_pred CCcc-----------cccc-cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0010 00 237778888888888 9999999999 99999999999999998 888888
Q ss_pred HHHHHHHHhhhccCCCcCC----CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhh
Q psy6064 308 YFSIAVVITMIVPYYEQNA----DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLS 383 (568)
Q Consensus 308 y~l~~~~~~~~~p~~~~~~----~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~ 383 (568)
|+..++++....+.++... .....++.+...|+.+..++.+.++++|+++.++-..+.+ ++|+
T Consensus 231 ~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a-------------~~f~ 297 (378)
T TIGR00796 231 FIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACS-------------EYFH 297 (378)
T ss_pred HHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH
Confidence 8999999999887654432 2355666777888999999999999999999999888855 5667
Q ss_pred ccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhh--hcccCC
Q psy6064 384 YVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLL--LRYSGD 442 (568)
Q Consensus 384 ~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~--~r~~~~ 442 (568)
|.++| +|+.+.++...+...+.....++.+++++.-...+.|-+.....+. +|++.|
T Consensus 298 ~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~ 356 (378)
T TIGR00796 298 KLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWD 356 (378)
T ss_pred HhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77754 9999999999988888888899999999999999999888877777 777665
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.72 E-value=6.7e-15 Score=152.90 Aligned_cols=270 Identities=15% Similarity=0.103 Sum_probs=189.8
Q ss_pred cccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh---h-------HHH
Q psy6064 85 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR---V-------LNS 147 (568)
Q Consensus 85 r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~---Y-------~~~ 147 (568)
+++|.++.+++.++.++|+|++..++..+ +.+|+..+++++++++.+++.++++ |+-. | ..+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~-~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVS-QSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILG 79 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHH-hccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHH
Confidence 37899999999999999999999999865 6788889999999999999988887 5212 2 566
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH-HHHHhh
Q psy6064 148 DVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTV-AIIVFS 226 (568)
Q Consensus 148 ~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l-~~~~i~ 226 (568)
+..+|.+.+..+..........+.+......++.+..++++.+++++...+..|++..+|++.++..+++... +++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~ 159 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILL 159 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765544433221111111111001112234556777888888889999999999999999998887663 333332
Q ss_pred hcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHH-HHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHH
Q psy6064 227 GLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAA-KCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVF 305 (568)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~-~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~ 305 (568)
.....+.+|..+ ..+.|+..++.+.. ...|+|.|+|......+|+|||+ +.||++..++.+++
T Consensus 160 ~~~~~~~~~l~P---------------~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~-~~~k~~~~~~~~~~ 223 (359)
T TIGR00912 160 APKLGNIKNLLP---------------VLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK-KIKKSIIKAIIIGV 223 (359)
T ss_pred hcccccHHHccC---------------ccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh-hhHHHHHHHHHHHH
Confidence 222222222221 22345566777776 78899999999999999999975 69999999999999
Q ss_pred HHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChh-HHH---HHHHHHHHHHHHHHHHHHhchhHHHHHH
Q psy6064 306 VCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWP-VMK---WLVTVGSLFALFTAMFGAFFPLPRILYA 371 (568)
Q Consensus 306 v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~-~~~---~iv~~~~~~~~~~~~~~~~~~~sR~l~a 371 (568)
++|.+..++.....++++... ..|..+..+....+ ... .++...-..+.+.....++++.++.+-.
T Consensus 224 ~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 224 LLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887764 56888887765332 222 3344445566666667777777777654
No 43
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.39 E-value=1.2e-09 Score=113.92 Aligned_cols=330 Identities=20% Similarity=0.217 Sum_probs=212.1
Q ss_pred cccChhHHHHHhhcccccchhhhhhhHhHhhhcCh-hHHHHHHHHHHHHHHhhhcc-------c------chh--h---H
Q psy6064 85 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVVKN-------P------NLR--V---L 145 (568)
Q Consensus 85 r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp-~~~~~~li~~v~~~~~a~~~-------P------~~~--Y---~ 145 (568)
|+-+.+...++.+|+.+|+|+...|-.. ..+|. ...+..+++...+...++.+ + ++. | .
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~--~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIAT--AGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 4557788999999999999999988653 34453 35555666666666666655 2 222 2 2
Q ss_pred HHHHHHHHHHH-------HHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q psy6064 146 NSDVKAISNQI-------DSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLG 218 (568)
Q Consensus 146 ~~~~~~w~~~l-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~ 218 (568)
.++..+..+++ .++.+ .++.+...+.... ..+.+++.....+.+++..+-+.|.|...|++..+...+++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg--~g~~~~~~l~~~~-~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~ 155 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISG--GGSILSSLLGNQL-GTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMII 155 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 22222222221 11111 1111222211111 12344556677777778888889999999999999999999
Q ss_pred HHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHH
Q psy6064 219 TVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAII 298 (568)
Q Consensus 219 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~ 298 (568)
.++.+++.++.+.+.++..... -.+..+...+..+...+++|.-...++.+.+..++-+|.+.|++.
T Consensus 156 ~~~~l~~~~~p~~~~~~L~~~~-------------~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~ 222 (394)
T PF03222_consen 156 SFIILVVYLIPHWNPSNLLDAP-------------PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAII 222 (394)
T ss_pred HHHHHHHHHhhhcCHHHhhccc-------------cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHH
Confidence 9998888888776655433200 012346667888899999999999999999999977888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcC----CC---CCHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6064 299 LSLLIVFVCYFSIAVVITMIVPYYEQN----AD---APFPAIFDR-LGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILY 370 (568)
Q Consensus 299 ~s~~~~~v~y~l~~~~~~~~~p~~~~~----~~---~~~~~~~~~-~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~ 370 (568)
.+..+..++|++-..+..+.+|.++.. .+ +++....++ .++++...+..++..++..++-.+...+..+.+.
T Consensus 223 ~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 223 IGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887542 22 233344444 4667888888899999999888888888777664
Q ss_pred HHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhc--HHHHHHHHHHHH-HHHHHHHHHHHhhhcccCC
Q psy6064 371 AMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFK--LDQLVDMMSIGT-LLAYIIVAICVLLLRYSGD 442 (568)
Q Consensus 371 a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~--~~~l~~~~~~~~-~i~y~~~~~~~l~~r~~~~ 442 (568)
..= .+.+.+.+. .....++.+..+++.+..+ |....+.++... .+..+++.+..++.|++++
T Consensus 303 d~~---------k~~~~~~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 303 DLF---------KLKNNSSGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred HHH---------cCCccccch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHcccC
Confidence 332 221111111 2233444444455555443 555566666443 4444555555666655553
No 44
>PHA02764 hypothetical protein; Provisional
Probab=99.38 E-value=8e-11 Score=113.09 Aligned_cols=305 Identities=15% Similarity=0.129 Sum_probs=174.6
Q ss_pred CCccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h--
Q psy6064 78 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V-- 144 (568)
Q Consensus 78 ~~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y-- 144 (568)
.+..+|-|+.+++|.++..++.+.+.....-+...+....|+..+++|+++++++++.+++| |.-+ |
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYIS 84 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIR 84 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhH
Confidence 34568999999999999999988332211222222223346668999999999999999999 5222 3
Q ss_pred -----HHHHHHHHHHHHHHhhhhHHHHHHHH-hccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q psy6064 145 -----LNSDVKAISNQIDSLMGNAYQKSMES-LLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLG 218 (568)
Q Consensus 145 -----~~~~~~~w~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~ 218 (568)
..++..||..|+....+.+...-+.. .+..+ +....+.-..-......+-..|.+.++|...++.....+
T Consensus 85 RAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~----~~~~~f~~~~s~~~i~~~i~~~~~~~~~~v~il~~a~~i 160 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQ----NQFEQFLIVESLFPIVLLIIANKKIYAKIVDILAIAQII 160 (399)
T ss_pred HhhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeH----HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 68889999999988887655421111 00000 000111112222223333445678888877765444433
Q ss_pred HHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchh-HHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHH
Q psy6064 219 TVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVN-GIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAI 297 (568)
Q Consensus 219 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~-~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai 297 (568)
++.+...+.-|.... .+..+ ....++..-.-+|.=.|+..+.++|.||-+|....+-
T Consensus 161 ------~aif~~~~s~n~~~~----------------~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gy 218 (399)
T PHA02764 161 ------IAIFIAFKSFNFQYQ----------------NFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGY 218 (399)
T ss_pred ------HHHHhhccceeEEEc----------------ceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhh
Confidence 222222222222210 01111 1444555555555667999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCc
Q psy6064 298 ILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGL 377 (568)
Q Consensus 298 ~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~ 377 (568)
..+...+.++-+..+ + + ... +.-+.+....++-+....-..||+.++|+-|+.
T Consensus 219 f~s~~~~~~~~ii~s--------y-----~-n~~-------------il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~ 271 (399)
T PHA02764 219 FVSYGIVAILSIIDS--------Y-----S-NLN-------------ILFALMPIWFFSYMPIANKIQSRLIQTMSFDKV 271 (399)
T ss_pred HHHHHHHHHHHHHHh--------h-----h-hHH-------------HHHHHHHHHHHhheeeecchHHHHHHHHHhhhh
Confidence 777776665554443 0 0 011 111223344455555556678999999999999
Q ss_pred cchhhhccCCCCccchHHHHHHHHHHHHHHHHhc---HHHHHHH-HHHHHHHHHHHHHHHHhhhcccC
Q psy6064 378 LYERLSYVSSRTQTPLLSTALSGVITAVMSAVFK---LDQLVDM-MSIGTLLAYIIVAICVLLLRYSG 441 (568)
Q Consensus 378 lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~---~~~l~~~-~~~~~~i~y~~~~~~~l~~r~~~ 441 (568)
+|+.|+|.+| ++|+- ......+..++-+ ++--..+ ..+...-.|.+..++..+.+.++
T Consensus 272 lpe~f~k~~~--nv~~l----~f~~~~~~~~~en~l~~~~sf~ldg~lf~~wn~~~~a~~~~k~~~~k 333 (399)
T PHA02764 272 LPEKFSKINP--NVLLL----IFIAETIANVLENLLGFNISFGLDGLLFIFWNFIIVAFAYLKLMNDK 333 (399)
T ss_pred chHHHhccCC--CceeH----HHHHHHHHHHHHHHhCCeeeeeccccHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999994 78872 2222222222211 1110111 12344556777777766554443
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.27 E-value=2.9e-09 Score=110.99 Aligned_cols=260 Identities=13% Similarity=0.095 Sum_probs=179.7
Q ss_pred HHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------------c-----chh--h---HHHHH
Q psy6064 93 TMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------------P-----NLR--V---LNSDV 149 (568)
Q Consensus 93 ~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------------P-----~~~--Y---~~~~~ 149 (568)
+.+.+|.++|+|++..+.. +|...++.++++++++++.++.+ | ++. + ..+..
T Consensus 9 ~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 3456777899999999876 23344666776666655554432 3 222 1 56666
Q ss_pred HHHHHHHHHhhh---------hHHHHHHHHhccccCCCCCcchh-HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q psy6064 150 KAISNQIDSLMG---------NAYQKSMESLLPIKSSFLSSYPD-FIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT 219 (568)
Q Consensus 150 ~~w~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~ 219 (568)
.++.+++..... ....+++...... +.+++ +.++.+++++..++..|.|...|++.++...+++.
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~-----~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~ 158 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT-----APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLI 158 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 666665543322 1122222222211 22233 56777777778999999999999999999999888
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhh----hhhcCc---ccc
Q psy6064 220 VAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTG----EETRNP---KRN 292 (568)
Q Consensus 220 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a----~E~knP---~r~ 292 (568)
++++.+..+...+.++....+. ....+..++.++...+|+|.|+|.++.++ ||.+|| +|.
T Consensus 159 l~~l~~~lip~~~~~~L~~~p~-------------~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k 225 (397)
T TIGR00814 159 LVLLSLYLIPHWNGANLTTFPS-------------FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERK 225 (397)
T ss_pred HHHHHHHHHHHcCHHHHhcCCc-------------ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHH
Confidence 8888888777665555432110 01134668899999999999999999999 777755 577
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCC----CCC-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHH
Q psy6064 293 IPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNA----DAP-FPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPR 367 (568)
Q Consensus 293 iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~----~~~-~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR 367 (568)
..|++..+..+..++|+....+.....++++..+ +.+ +....+....+....+..+...++..++-.+..++...
T Consensus 226 ~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e 305 (397)
T TIGR00814 226 CLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGARE 305 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8899999999999999999999999998877532 212 22233445667777777788888888888888888888
Q ss_pred HHHHHHhc
Q psy6064 368 ILYAMSRD 375 (568)
Q Consensus 368 ~l~a~ard 375 (568)
.+..+-++
T Consensus 306 ~l~~l~~~ 313 (397)
T TIGR00814 306 GLNGIVLN 313 (397)
T ss_pred HHHHHHHH
Confidence 77777643
No 46
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=99.24 E-value=1.3e-11 Score=87.30 Aligned_cols=51 Identities=57% Similarity=1.207 Sum_probs=49.9
Q ss_pred ccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhcccccc
Q psy6064 513 FKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHS 563 (568)
Q Consensus 513 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 563 (568)
||+|+.|++|+++++.|+++|.+++..+|.++++|+++|+++|+.|++||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 799999999999999999999999999999999999999999999999986
No 47
>PRK10483 tryptophan permease; Provisional
Probab=99.24 E-value=2.5e-08 Score=103.44 Aligned_cols=275 Identities=12% Similarity=0.053 Sum_probs=177.7
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcCh-hHHHHHHHHHHHHHHhhhcc-------c------chh--h-
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVVKN-------P------NLR--V- 144 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp-~~~~~~li~~v~~~~~a~~~-------P------~~~--Y- 144 (568)
..|++.+.+...++..|+.||.|+...|-.. +..|- ...+..++..+++...++.+ | ++. |
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~--a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVM--SGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHc
Confidence 3467899999999999999999998888653 23343 24555555556666666655 2 222 2
Q ss_pred -HHHHHHHHHHH--------HHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q psy6064 145 -LNSDVKAISNQ--------IDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFA 215 (568)
Q Consensus 145 -~~~~~~~w~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~ 215 (568)
..+-..+|..+ .+|+.+. ++.+...+.. ...+.+.+.-.+.+.+++..+-+.|.|...|++.++...
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~AYisg~--g~il~~~l~~--~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~ 159 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYAYISAS--GSILHHTFAE--MSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGA 159 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHh--cCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11222222221 1222211 1111111111 111334557778888889999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhh
Q psy6064 216 NLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPL 295 (568)
Q Consensus 216 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ 295 (568)
+++.+++.+...+.+.+.++..+... + .+..+...+.++...+++|.=...++.+.+..++-.|.+.|
T Consensus 160 ~i~~f~~~~~~l~~~i~~~~L~~~~~--------~----~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~ 227 (414)
T PRK10483 160 KVITFFLTFGSLLGHVQPATLFNVAE--------S----NASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK 227 (414)
T ss_pred HHHHHHHHHHHHHhhcCHHHHhcccc--------c----cchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH
Confidence 99888877776665555433321110 0 01113346667777777776667888888887765568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcC----CCCCHH---HHHHH-hChhHHHHHHHHHHHHHHHHHHHHHhchhHH
Q psy6064 296 AIILSLLIVFVCYFSIAVVITMIVPYYEQN----ADAPFP---AIFDR-LGWPVMKWLVTVGSLFALFTAMFGAFFPLPR 367 (568)
Q Consensus 296 ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~----~~~~~~---~~~~~-~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR 367 (568)
++..+..+..++|++-..+..+.+|+++.. +++... ..++. ...+....+..++..++..+|-.+...+...
T Consensus 228 ~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d 307 (414)
T PRK10483 228 CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFD 307 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999977632 233332 33333 4556777778888888888877777777666
Q ss_pred HHHHHHh
Q psy6064 368 ILYAMSR 374 (568)
Q Consensus 368 ~l~a~ar 374 (568)
.+..+-+
T Consensus 308 ~l~D~~k 314 (414)
T PRK10483 308 YLADLFG 314 (414)
T ss_pred HHHHHhC
Confidence 6665443
No 48
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.21 E-value=2.7e-08 Score=103.10 Aligned_cols=270 Identities=12% Similarity=0.103 Sum_probs=169.9
Q ss_pred ChhHHHHHhhcccccchhhhhhhHhHhhhcCh-hHHHHHHHHHHHHHHhhhcc-------c------chh--h--HHHHH
Q psy6064 88 GLIDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVVKN-------P------NLR--V--LNSDV 149 (568)
Q Consensus 88 ~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp-~~~~~~li~~v~~~~~a~~~-------P------~~~--Y--~~~~~ 149 (568)
+.+...++..|+++|.|+...|-.. +..|- ...+..++..+.+...++.+ | ++. | ..+-.
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~--a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDL--AGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 7777999999999999998888652 23343 24555555566666666655 2 222 1 22222
Q ss_pred HHHHHH--H------HHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q psy6064 150 KAISNQ--I------DSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVA 221 (568)
Q Consensus 150 ~~w~~~--l------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~ 221 (568)
..|..+ + +|+.+. ++.+...+.. ....+.+.....+.+.+++..+-+.|.|...|++.++...+++.++
T Consensus 88 i~~~~~~fl~Y~Ll~AYisgg--G~il~~~l~~-~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii~f~ 164 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISAN--GAIISETISM-NLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFV 164 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--HHHHHHHHhh-hccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 222222 1 222211 1111111111 0112334556778888899999999999999999999999998888
Q ss_pred HHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHH
Q psy6064 222 IIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSL 301 (568)
Q Consensus 222 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~ 301 (568)
+.+.....+.+.++...... ..+ ...-+...+.++...+++|.=...++.+..-.++-.|.++|+++.+.
T Consensus 165 ~~~~~l~~~i~~~~L~~~~~--------~~~--~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs 234 (415)
T PRK09664 165 IVFGSFFFQVDYSILRDATS--------TTA--GTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGS 234 (415)
T ss_pred HHHHHHhhcccHHHHhcCcc--------ccc--cchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHH
Confidence 77777766665544332110 000 00002235556666666665566778888777766678999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCcC----CCCCHHH----HHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q psy6064 302 LIVFVCYFSIAVVITMIVPYYEQN----ADAPFPA----IFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAM 372 (568)
Q Consensus 302 ~~~~v~y~l~~~~~~~~~p~~~~~----~~~~~~~----~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ 372 (568)
.+..++|++-..+....+|+++.. ++....+ ..+...+++...+..++..++..++-.+...+....+..+
T Consensus 235 ~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~ 313 (415)
T PRK09664 235 LLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL 313 (415)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877642 2223333 2234466777778888888888877777666665555543
No 49
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.13 E-value=1.4e-07 Score=98.32 Aligned_cols=320 Identities=14% Similarity=0.117 Sum_probs=197.1
Q ss_pred ChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------c------chh--h---HHHH
Q psy6064 88 GLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN-------P------NLR--V---LNSD 148 (568)
Q Consensus 88 ~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~-------P------~~~--Y---~~~~ 148 (568)
+.+...++..|+.+|.|+...|-.. ..+|.. ..+..+++..++...++.+ | ++. | ..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~--~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAA--AGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 6678889999999999999888653 345543 3444444444444444433 2 112 2 2233
Q ss_pred HHHHHHHH-------HHhhhh--HHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q psy6064 149 VKAISNQI-------DSLMGN--AYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT 219 (568)
Q Consensus 149 ~~~w~~~l-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~ 219 (568)
.....+++ .|..+. -..+.+...... +.+.....+.+.++...+-+.|.|...|++.++...+++.
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-----~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-----SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-----CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 32222222 111110 011111111111 1123355666667777788889999999999999999888
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064 220 VAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299 (568)
Q Consensus 220 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~ 299 (568)
++...+....+.+.++....+ + +....+.++...+++|.=...++.+....++-+|.++|++..
T Consensus 157 ~~~~~~~l~p~~~~~~L~~~~-------------~---~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~ 220 (403)
T PRK15132 157 LVVMLALMMPHIHKVNLLTLP-------------L---QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFII 220 (403)
T ss_pred HHHHHHHHHHhcCHHHHhcCC-------------c---cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHH
Confidence 877766666655554433110 0 011266677777888877778889988888777889999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcC----CCC---CHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q psy6064 300 SLLIVFVCYFSIAVVITMIVPYYEQN----ADA---PFPAIF-DRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYA 371 (568)
Q Consensus 300 s~~~~~v~y~l~~~~~~~~~p~~~~~----~~~---~~~~~~-~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a 371 (568)
+..+..++|++-..+..+.+|.++.. ++. +..+.+ +...+++...++.++..++..++-.+...+....+..
T Consensus 221 Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 300 (403)
T PRK15132 221 GSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLAD 300 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987642 222 233333 3356788888888998888888888888887777776
Q ss_pred HHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh--cHHHHHHHHHH-HHHHHHHHHHHHHhhhccc
Q psy6064 372 MSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF--KLDQLVDMMSI-GTLLAYIIVAICVLLLRYS 440 (568)
Q Consensus 372 ~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~--~~~~l~~~~~~-~~~i~y~~~~~~~l~~r~~ 440 (568)
+-+.+. +++.+. ...+++.+..+++.... .|....+.++. ...+.+.++.....+.|++
T Consensus 301 ~~~~~~--------~~~~r~--~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 301 LFQRRN--------TVGGRL--QTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred HHccCc--------cccCCc--hhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 543211 111122 22344445555555444 25544455443 3455566666666666644
No 50
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=98.98 E-value=2.4e-06 Score=90.01 Aligned_cols=263 Identities=16% Similarity=0.155 Sum_probs=172.2
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhcc-------cc----h---h--h
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVKN-------PN----L---R--V 144 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~~-------P~----~---~--Y 144 (568)
..+++-+.++.+.+.+|.++|+|+...|-.. ..+|-. .++..++++.++.+..+.+ |+ + + |
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 4567888899999999999999999888642 344543 4555666666666666655 31 1 1 2
Q ss_pred ---HHHHHHHHHHHHHHhhhh-----HHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Q psy6064 145 ---LNSDVKAISNQIDSLMGN-----AYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFAN 216 (568)
Q Consensus 145 ---~~~~~~~w~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~ 216 (568)
..++..+.++++...... ..++.+.+.+.......+....+..+++..++..+.+.|.+..-|.+..+...+
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~ 161 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK 161 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 233333333222111100 011111111111011111455677778888888899999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccc-hhh
Q psy6064 217 LGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRN-IPL 295 (568)
Q Consensus 217 ~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~-iP~ 295 (568)
++.++++.+....+.+.++....+. . .+.-+..++.++...+++|.+.-.+..+..|++++.++ ++|
T Consensus 162 v~~~~~l~~~~~~~~~~~~l~~~~~----------~--~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k 229 (415)
T COG0814 162 VIYLVLLVVYLIPHWNPANLFALPS----------A--SQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK 229 (415)
T ss_pred HHHHHHHHHHHhcccCHHHHhcccc----------c--chhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHH
Confidence 9998888888777654433221100 0 02335668899999999999999999999999988877 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcC-------CCCCHHHHHH-HhChhHHHHHHHHHHHHHHHHHH
Q psy6064 296 AIILSLLIVFVCYFSIAVVITMIVPYYEQN-------ADAPFPAIFD-RLGWPVMKWLVTVGSLFALFTAM 358 (568)
Q Consensus 296 ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~-------~~~~~~~~~~-~~~~~~~~~iv~~~~~~~~~~~~ 358 (568)
++..+..+..++|+........+.+.+... ++........ ....+.......+..+++..++-
T Consensus 230 ~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSF 300 (415)
T COG0814 230 AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSF 300 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877321 1222333332 23445556666666666665553
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.92 E-value=4.5e-07 Score=92.61 Aligned_cols=264 Identities=14% Similarity=0.164 Sum_probs=178.6
Q ss_pred ccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------c--chh-h-------HHHH
Q psy6064 86 VLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------P--NLR-V-------LNSD 148 (568)
Q Consensus 86 ~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P--~~~-Y-------~~~~ 148 (568)
|+|.++.+.+.+..++|+|+...++..+... | ..+++.+++++..+...+.+ | ++. | ..|.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ 78 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-G-DAWISVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGK 78 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHH
Confidence 5788999999999999999999999877444 6 77777777777777766655 4 222 2 2233
Q ss_pred HHHHHHHHHHhhhhH-----HHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q psy6064 149 VKAISNQIDSLMGNA-----YQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAII 223 (568)
Q Consensus 149 ~~~w~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~ 223 (568)
..+..+.+..+.... ..+.+...+ .++.+...+...+++++......|.+..+|...++....++.++++
T Consensus 79 ii~~~~~l~~l~~~~~~lr~~~~~i~~~~-----lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i 153 (320)
T PF03845_consen 79 IINLLYILYFLLISALVLREFSEFIKTYL-----LPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLI 153 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222211111 111121111 2244566777888888889999999999998888777776666665
Q ss_pred HhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHH
Q psy6064 224 VFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLI 303 (568)
Q Consensus 224 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~ 303 (568)
.....-..+.+|..+ ..+.|+..++.+.....+.|.|+|....+...+|||+| ..|....+..+
T Consensus 154 ~~~~~~~~~~~~l~P---------------~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~k~~~~~~~~ 217 (320)
T PF03845_consen 154 LLLSIPNIDWDNLLP---------------VLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK-LKKSLLIAILI 217 (320)
T ss_pred HHHhcccCCHHHeeC---------------cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHH
Confidence 555544333333221 33456777888888899999999999999999999865 68999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCcCC-CCCHHHHHHHhChh-H---HHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q psy6064 304 VFVCYFSIAVVITMIVPYYEQNA-DAPFPAIFDRLGWP-V---MKWLVTVGSLFALFTAMFGAFFPLPRILYAM 372 (568)
Q Consensus 304 ~~v~y~l~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~-~---~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ 372 (568)
++++|....+......+++.... .-|.....+...-+ . .-.++...-..+.+......++++++.+..+
T Consensus 218 ~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 218 SGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888765544 45776666554221 2 2234444555566666667777777776644
No 52
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.69 E-value=3e-05 Score=80.78 Aligned_cols=187 Identities=13% Similarity=0.132 Sum_probs=132.7
Q ss_pred chhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccc-hh
Q psy6064 182 YPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFG-VN 260 (568)
Q Consensus 182 ~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~ 260 (568)
+..+.+++++.++..+-..|.|..-|++.++...+++.++++.+..+.+.+.++....+.+.. .. ....+ ..
T Consensus 137 ~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~----~~---~~~~~~~~ 209 (443)
T PRK13629 137 NRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSL----SL---TGHDGILV 209 (443)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccc----cc---cccccHHH
Confidence 456788899999999999999999999999999999999999988888776655542210000 00 00001 12
Q ss_pred HHHHhHHHHhhhhhhhhHHhhhhhh----h------cCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcC----C
Q psy6064 261 GIVTGAAKCFFGFVGFDGIATTGEE----T------RNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQN----A 326 (568)
Q Consensus 261 ~~~~~~~~~~~~~~G~e~~~~~a~E----~------knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~----~ 326 (568)
..+.++...+++|.=.-.++.++.. . ++.+|...|++..+..+..++|++..+...+.+|+++.. +
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 3555666666666433344444433 3 223577889999999999999999999999999988753 3
Q ss_pred CCC-HHHHHHHhCh---------hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhc
Q psy6064 327 DAP-FPAIFDRLGW---------PVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRD 375 (568)
Q Consensus 327 ~~~-~~~~~~~~~~---------~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ard 375 (568)
+.+ +....+...+ +....+..++..++..++-.+...+.-..+..+.++
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILK 348 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 4555555544 667777788888888888888888888888877753
No 53
>PRK11375 allantoin permease; Provisional
Probab=98.57 E-value=0.001 Score=71.74 Aligned_cols=309 Identities=13% Similarity=0.081 Sum_probs=140.0
Q ss_pred CCccccccccChhHHHHHhhcccccchhhhhhhHhHhhhc-Ch-hHHHHHHHHHHHHHHhhhcc---------c------
Q psy6064 78 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQA-GP-SVVISFAIAAVTSLFSVVKN---------P------ 140 (568)
Q Consensus 78 ~~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~-Gp-~~~~~~li~~v~~~~~a~~~---------P------ 140 (568)
...++.+|+.++++.+.+=++..+..+.+...+... ..| +. .++++.+++.++..+..... |
T Consensus 18 ~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l-~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR 96 (484)
T PRK11375 18 LPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF-ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILR 96 (484)
T ss_pred CcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHH
Confidence 344556788999999988776665544443333322 221 22 25555555544333222211 2
Q ss_pred -chh----hHHHH------HHHHHHHHHHhhhhHHHHHHHHhccc----cC--CCCCc--chhHHHHHHHHHHHHHHHhc
Q psy6064 141 -NLR----VLNSD------VKAISNQIDSLMGNAYQKSMESLLPI----KS--SFLSS--YPDFIAPIFVAVITGLLSWG 201 (568)
Q Consensus 141 -~~~----Y~~~~------~~~w~~~l~~~~~~~~~~~~~~~~~~----~~--~~~~~--~~~~ia~~~i~~~~~ln~~g 201 (568)
.++ +..++ ..+|...-.+..+.+....+....+. .. +.... ......+++.++.+.+-..|
T Consensus 97 ~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g 176 (484)
T PRK11375 97 ASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGG 176 (484)
T ss_pred HHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 222 12222 23555555555555554444333211 00 00111 11223334445556667789
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhh-hhhHHh
Q psy6064 202 ASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFV-GFDGIA 280 (568)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~-G~e~~~ 280 (568)
.|...+++.+...+.++..+.+.+..+...+.+. .....+.+ ..+ ....++ .+..++...+-++. +.-..+
T Consensus 177 ~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~---~~~~~~~~---~~~-~~~~~~-~~~~~i~~vig~~~~~~~~~~ 248 (484)
T PRK11375 177 GKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGP---IFDYIPSG---IQK-AENSGF-LFLVVINAVVAVWAAPAVSAS 248 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch---hhccCccc---ccC-CcchHH-HHHHHHHHHHHHHHHHHcccc
Confidence 9999998888877766555544444333322111 10000000 000 011122 24444433332333 333556
Q ss_pred hhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHH-hhhccCCCcCCCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Q psy6064 281 TTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVI-TMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMF 359 (568)
Q Consensus 281 ~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~ 359 (568)
..+...|+++... ++...+..+...+.....+.. ......... ......+++.+.....+..+..+..+++..++..
T Consensus 249 D~tRy~k~~~~~~-~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~-~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN~ 326 (484)
T PRK11375 249 DFTQNAHSFRAQA-LGQTLGLVVAYILFAVASVCIIAGASIHYGA-DTWNVLDIVQRWDSLFASFFAVLVILMTTISTNA 326 (484)
T ss_pred chhcccCChhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 6777777764433 454444444443322222211 111111111 1223444555444444545555666666666644
Q ss_pred -HHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh
Q psy6064 360 -GAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF 410 (568)
Q Consensus 360 -~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~ 410 (568)
..+++.+=-+ .+.+||+. +.| ++.++.++++.++....
T Consensus 327 ~~N~ys~~~~l-----~~l~pk~i---~~~-----~~~~i~~iig~~~~pw~ 365 (484)
T PRK11375 327 TGNIIPAGYQI-----AALAPTKL---TYK-----NGVLIASIISLLICPWK 365 (484)
T ss_pred HhhcccHHHHH-----HHhCcCcc---chh-----hHHHHHHHHHHHhccHH
Confidence 4565555433 45566543 322 46666666666554443
No 54
>KOG1303|consensus
Probab=98.44 E-value=0.0003 Score=73.99 Aligned_cols=329 Identities=13% Similarity=0.116 Sum_probs=173.1
Q ss_pred CccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhH-HHHHHHHHHHHHHhhhc----c--------------
Q psy6064 79 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSV-VISFAIAAVTSLFSVVK----N-------------- 139 (568)
Q Consensus 79 ~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~-~~~~li~~v~~~~~a~~----~-------------- 139 (568)
+....+|+-++++...-.++.++|.|+..++-. .+..|... +...++.+++.+.++.. +
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A--~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y 107 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYA--LAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRY 107 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHH--HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCh
Confidence 334556789999999999999999999888743 35677653 66677777776666542 2
Q ss_pred cchhh-HHH----HHHHHHHHHHHhhhhH------HHHHHHHhcc---ccCCCCCcchhHHHHHHHHHHHHHHHhcchhH
Q psy6064 140 PNLRV-LNS----DVKAISNQIDSLMGNA------YQKSMESLLP---IKSSFLSSYPDFIAPIFVAVITGLLSWGASES 205 (568)
Q Consensus 140 P~~~Y-~~~----~~~~w~~~l~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~ 205 (568)
|++++ ..| ...++..++.. ++.+ .++-+..... .+..........+..+++.+. ...+-..+..
T Consensus 108 ~dl~~~afG~~~~~iv~~~~~~~~-fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~-~s~lp~~~~l 185 (437)
T KOG1303|consen 108 PDLGQAAFGPKGRLLVSVLQYLEL-FGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLP-LSQLPNFHSL 185 (437)
T ss_pred HHHHHHHhCCCceEeeeHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHH-HHHCCCcchh
Confidence 22221 111 11222222211 1111 1111122211 111011111222222222221 1123344555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhh
Q psy6064 206 AKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEE 285 (568)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E 285 (568)
..+.....+..+......++.+.......+.. ..... ...+.+. .+.++....|+|.|.-....+-..
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~--~~~~~--------~~~~~~~--~f~a~g~iaFaf~gH~v~peIq~t 253 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAP--SGGYL--------DLGTIPT--VFTALGIIAFAYGGHAVLPEIQHT 253 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCc--ccCcc--------cCCCCcc--hhhhhhheeeeecCCeeeeehHhh
Confidence 55555555555555555556665544222111 00000 0111111 167888999999999999999999
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHHhch
Q psy6064 286 TRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRL-GWPVMKWLVTVGSLFALFTAMFGAFFP 364 (568)
Q Consensus 286 ~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~iv~~~~~~~~~~~~~~~~~~ 364 (568)
+|+|++ +.|+.+.+..+++++|+...+.-..+.++... .+..... ...|.....++.+.+-.+++..-.
T Consensus 254 Mk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~------~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~--- 323 (437)
T KOG1303|consen 254 MKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVP------DNILLSLQPPTWLIALANILIVLHLIGSYQIY--- 323 (437)
T ss_pred cCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccc------hhhhhcccCchhHHHHHHHHHHHHHhhhhhhh---
Confidence 999999 99999999999999999999988887775432 2222233 356666677777777666544322
Q ss_pred hHHHHHHHHhc--CccchhhhccCCCCccchHHHHHHHHHH--HHHH-HHhcHHHHHHHHHH--HHHHHHHHHHHHHhhh
Q psy6064 365 LPRILYAMSRD--GLLYERLSYVSSRTQTPLLSTALSGVIT--AVMS-AVFKLDQLVDMMSI--GTLLAYIIVAICVLLL 437 (568)
Q Consensus 365 ~sR~l~a~ard--g~lP~~f~~v~~r~~~P~~Ail~~~~i~--~~~~-~~~~~~~l~~~~~~--~~~i~y~~~~~~~l~~ 437 (568)
+.-++...+. +.-++.+.+ +..+.+.++=+..+. ..++ .+..|+.+.++.+. ....+|.++++..+..
T Consensus 324 -a~pl~~~~E~~~~~~~~~~~~----~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 324 -AQPLFDVVEKLIGVKHPDFKK----RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred -hcchHHHHHHHhccCCccccc----cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333221 111111222 122233322221111 1112 22245666665443 3566777888777766
Q ss_pred c
Q psy6064 438 R 438 (568)
Q Consensus 438 r 438 (568)
+
T Consensus 399 ~ 399 (437)
T KOG1303|consen 399 K 399 (437)
T ss_pred h
Confidence 3
No 55
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.42 E-value=4.6e-05 Score=79.01 Aligned_cols=283 Identities=17% Similarity=0.094 Sum_probs=151.1
Q ss_pred cccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhhc-------c----c--chh-----
Q psy6064 83 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVVK-------N----P--NLR----- 143 (568)
Q Consensus 83 l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~~-------~----P--~~~----- 143 (568)
-+++++.++.++.++++.+|.|-...... +...|||+ ++|-|+.+.+.+ .+.++ | + ++.
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~-AI~~GGPGAiFWMWi~a~~Gm-atk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVAT-AIAIGGPGAIFWMWISALLGM-ATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHH-HHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 34689999999999999999998887776 55889998 566666655433 32221 1 1 111
Q ss_pred h--------HHHHHHHHHHHHHHhhh-hHHH-HHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q psy6064 144 V--------LNSDVKAISNQIDSLMG-NAYQ-KSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLT 213 (568)
Q Consensus 144 Y--------~~~~~~~w~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~ 213 (568)
| ..+...+.........+ .... +.+.... + ..++.+++..++++.+++.++-.-|+|..+++...+.
T Consensus 93 yi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~--~-~~f~i~~~~~gi~l~~l~~~vi~GGikrI~~v~~~lV 169 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADAL--S-SAFGIPPWITGIILAILVALVIFGGIKRIAKVSEKLV 169 (416)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--H-hhccccHHHHHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 2 12211111111111111 0010 1111111 1 1224456677888888888888899999999998888
Q ss_pred HHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHH------HhHHHHhhh---hhhhhHHhhhhh
Q psy6064 214 FANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIV------TGAAKCFFG---FVGFDGIATTGE 284 (568)
Q Consensus 214 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~------~~~~~~~~~---~~G~e~~~~~a~ 284 (568)
-+..+.-++..+..+... .++.......++.+.-+... .-.|..|.. .|+.=..|+ =.|....+|.+.
T Consensus 170 P~Ma~~Yi~~~l~ii~~n-~~~ip~~~~~If~~AF~~~a--a~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a 246 (416)
T PF01235_consen 170 PFMAILYILGGLIIIIIN-IDQIPAAFSLIFSSAFTPKA--AFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAAA 246 (416)
T ss_pred HHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHcCCcc--chhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHHh
Confidence 777666554444443321 11110000001110000000 001222211 233333332 347778888889
Q ss_pred hhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcC--CCCC-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Q psy6064 285 ETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQN--ADAP-FPAIFDRLGWPVMKWLVTVGSLFALFTAMFGA 361 (568)
Q Consensus 285 E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~--~~~~-~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~ 361 (568)
|+++|.|.-=.+++-..+=+.++-.+..+.+...-.+.... ++.. ...+++...++++..++.+.+++-.+++.+++
T Consensus 247 ~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~ 326 (416)
T PF01235_consen 247 ETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGW 326 (416)
T ss_pred cCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999875433333322222222222222222221111111 1222 34556666778899999999999999999999
Q ss_pred hchhHHHHHHHH
Q psy6064 362 FFPLPRILYAMS 373 (568)
Q Consensus 362 ~~~~sR~l~a~a 373 (568)
.+..-|-+.-+-
T Consensus 327 ~~yge~~~~yl~ 338 (416)
T PF01235_consen 327 YYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHc
Confidence 888888776655
No 56
>KOG1304|consensus
Probab=98.38 E-value=0.00022 Score=74.09 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=94.9
Q ss_pred hhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchh---hHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHH
Q psy6064 259 VNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIP---LAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFD 335 (568)
Q Consensus 259 ~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP---~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~ 335 (568)
+.++-..+.+++|+|.|.-.+-.+=+++|+|++ +| ..+-.++.++.++|...-..-....+++--.+ +.-
T Consensus 240 ~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s------ITL 312 (449)
T KOG1304|consen 240 WSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS------ITL 312 (449)
T ss_pred hhhhHHHHHHHHHHhccceEEEehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce------EEe
Confidence 566778889999999999999999999999976 66 88999999999999988776666555542111 001
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHH-HhcHHH
Q psy6064 336 RLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSA-VFKLDQ 414 (568)
Q Consensus 336 ~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~-~~~~~~ 414 (568)
+....+....+-+...++.+.+---.++..-++++.- +.+++++ ++++=.+..-=++..+++.+++. +.+++.
T Consensus 313 NLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~ 386 (449)
T KOG1304|consen 313 NLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLAL 386 (449)
T ss_pred cCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHh
Confidence 2222344455555555555555444555556665542 2333331 10000111111122222222222 456888
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhh
Q psy6064 415 LVDMMSIGT--LLAYIIVAICVLL 436 (568)
Q Consensus 415 l~~~~~~~~--~i~y~~~~~~~l~ 436 (568)
++++.+... .+.++.+.+--+.
T Consensus 387 fisLVGs~~~s~L~li~P~liel~ 410 (449)
T KOG1304|consen 387 FISLVGSVSCSLLALIFPPLIELI 410 (449)
T ss_pred hHHHHHHHHHHHHHHHccHHHHHH
Confidence 888765554 4444444444333
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.23 E-value=0.011 Score=61.98 Aligned_cols=171 Identities=11% Similarity=0.008 Sum_probs=85.5
Q ss_pred CcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccch
Q psy6064 180 SSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGV 259 (568)
Q Consensus 180 ~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~ 259 (568)
..+.....++..++.++...+|.|...+++++.....++..+..+...+-..+..+... . -.|..+
T Consensus 127 ~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~-----------~---~~~~~~ 192 (442)
T COG1457 127 GLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALW-----------V---KGPTSP 192 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceee-----------c---cCCCcc
Confidence 33444566666677888899999999999999988877766555554443121111100 0 012334
Q ss_pred hHHHHhHHHHhhhhhhhh-HHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhC
Q psy6064 260 NGIVTGAAKCFFGFVGFD-GIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLG 338 (568)
Q Consensus 260 ~~~~~~~~~~~~~~~G~e-~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 338 (568)
..++.++..++-.+..|- .++..+.-.|+|+ |+.......+...+-...+..+....-....+.+ +..+.....|
T Consensus 193 ~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t---~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~-~~~~~~~~~G 268 (442)
T COG1457 193 LSFLSALSLVIGSFASWGPYAADYSRYAPSPT---PSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD-SIADVMLGLG 268 (442)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHhcc
Confidence 456666665554444443 2344444455443 2344444333333333333222222211111112 4555555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q psy6064 339 WPVMKWLVTVGSLFALFTAMFGAFFPLPRILY 370 (568)
Q Consensus 339 ~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~ 370 (568)
+ +.....+.+.++..++....+++++=-..
T Consensus 269 ~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~ 298 (442)
T COG1457 269 G--FGLPAILILVLGTVTTNANNLYSAGLSFA 298 (442)
T ss_pred c--HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4 44444555555666555555555543333
No 58
>PLN03074 auxin influx permease; Provisional
Probab=98.22 E-value=0.0029 Score=67.91 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=50.7
Q ss_pred chhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy6064 258 GVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPY 321 (568)
Q Consensus 258 g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~ 321 (568)
++..++.++....|+|.|.-....+-.|+|||++ .++....+...+..+|+...+......++
T Consensus 231 ~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~-F~~~~~l~~~~v~~~y~~~~~~gY~~fG~ 293 (473)
T PLN03074 231 KLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKYIYLAATLYVLTLTLPSAAAVYWAFGD 293 (473)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHhccChhc-ccchHHHHHHHHHHHHHHHHHeeeeeech
Confidence 3555777777899999999999999999999965 88888888888888888876655555554
No 59
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.09 E-value=0.022 Score=59.94 Aligned_cols=345 Identities=13% Similarity=0.057 Sum_probs=170.6
Q ss_pred CCCccccccccChhHHHHHhhcccccchhhhhhhHhHhhhc-Chh-HHHHHHHHHHHHHHhhhcc-----------c---
Q psy6064 77 ASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQA-GPS-VVISFAIAAVTSLFSVVKN-----------P--- 140 (568)
Q Consensus 77 ~~~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~-Gp~-~~~~~li~~v~~~~~a~~~-----------P--- 140 (568)
....++.+|+.++++-+.+=.+.+.-.+-+...+... +.| ++. ++++.+++-++....+..- |
T Consensus 31 L~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~-~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~ 109 (497)
T COG1953 31 LAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLF-ELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLS 109 (497)
T ss_pred CCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHH
Confidence 3445567899999999999777665555555555433 333 443 5666666655444443322 2
Q ss_pred --chh-h--------HHHHHHHHHHHHHHhhhhHHHHHHHHhccccC-CC-----CC-cchhHHHHHHHH-HHHHHHHhc
Q psy6064 141 --NLR-V--------LNSDVKAISNQIDSLMGNAYQKSMESLLPIKS-SF-----LS-SYPDFIAPIFVA-VITGLLSWG 201 (568)
Q Consensus 141 --~~~-Y--------~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~-~~-----~~-~~~~~ia~~~i~-~~~~ln~~g 201 (568)
+++ | ..-.+..|...-.++-+.+....+....+... +. .. ....++...+.+ +-..+-..|
T Consensus 110 RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g 189 (497)
T COG1953 110 RASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKG 189 (497)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 333 2 23334445444445555555544444443211 10 01 112244444444 445556689
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHh-hhhhhhhHHh
Q psy6064 202 ASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCF-FGFVGFDGIA 280 (568)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~-~~~~G~e~~~ 280 (568)
++...|++.+...+..+..+.+.+......+..... .+.+.... + -....| .++.++.... +-=+..-..+
T Consensus 190 ~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~---~~~p~~~~---~-~~~~~w-~~~~~~~~~v~~~Atl~lN~~ 261 (497)
T COG1953 190 MESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSIL---GELPAGTV---S-GSNSSW-AFLAGIAAWVGFWATLALNIP 261 (497)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCcc---ccCCCCCC---C-cchhHH-HHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999988888888887777655442111 11111100 0 001112 2333332211 1112333455
Q ss_pred hhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhChhHHHH-HHHHHHHHHHHHHHH
Q psy6064 281 TTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKW-LVTVGSLFALFTAMF 359 (568)
Q Consensus 281 ~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-iv~~~~~~~~~~~~~ 359 (568)
-.+.+.|+|+- .-++-++++.+...+..++.+......-.---+.-....++..+........ +..+..+++.++...
T Consensus 262 DFsRfa~s~~~-~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni 340 (497)
T COG1953 262 DFTRFAKSQKA-QIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNI 340 (497)
T ss_pred hhhcccCChhh-hhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhH
Confidence 66677777543 3344555555555555555554444322111111123455556555444443 556666666666554
Q ss_pred HHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh------cHHHHHHHHHHHHHHHHHHHHHH
Q psy6064 360 GAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF------KLDQLVDMMSIGTLLAYIIVAIC 433 (568)
Q Consensus 360 ~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~------~~~~l~~~~~~~~~i~y~~~~~~ 433 (568)
+.=..++-.-. .+.+|++... | ++-++.+++++++.=.- .|....+..+...--...+++.-
T Consensus 341 ~aN~vsp~~D~----s~l~Pk~in~---k-----rg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaD 408 (497)
T COG1953 341 AANIVSPGYDL----SALFPKYINI---K-----RGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIAD 408 (497)
T ss_pred HhccCChHHHH----HHhcccccch---h-----hhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333332222 1456665542 3 34555555555432111 13333333334444445556666
Q ss_pred HhhhcccCCc
Q psy6064 434 VLLLRYSGDE 443 (568)
Q Consensus 434 ~l~~r~~~~~ 443 (568)
.++.||++.+
T Consensus 409 yflirk~~~~ 418 (497)
T COG1953 409 YFLVRKGRLN 418 (497)
T ss_pred HHhhhcCccC
Confidence 7777777653
No 60
>PTZ00206 amino acid transporter; Provisional
Probab=98.08 E-value=0.0058 Score=65.71 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=53.2
Q ss_pred HHHHhHHHHhhhhhhhhHHhhhhhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy6064 261 GIVTGAAKCFFGFVGFDGIATTGEETRNPK-RNIPLAIILSLLIVFVCYFSIAVVITMIVPYY 322 (568)
Q Consensus 261 ~~~~~~~~~~~~~~G~e~~~~~a~E~knP~-r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~ 322 (568)
..+.++....|+|.+.-....+-+|+|||. |+..+.+..++.++.++|.++.+.-....+++
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 467888999999999999999999999974 67888999999999999999888777666543
No 61
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.07 E-value=0.0014 Score=68.53 Aligned_cols=280 Identities=15% Similarity=0.142 Sum_probs=141.9
Q ss_pred cccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhh------cc---c---ch-----hh--
Q psy6064 85 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVV------KN---P---NL-----RV-- 144 (568)
Q Consensus 85 r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~------~~---P---~~-----~Y-- 144 (568)
++++.++.++..++..+|.|-....... ...|||+ ++|-|+.+.+.+...-. -| + ++ .|
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATA-IAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 4699999999999999999844444443 4789997 56666655443322111 11 2 13 12
Q ss_pred ------HHHHHHHHHHHHHHh-hhh--HHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Q psy6064 145 ------LNSDVKAISNQIDSL-MGN--AYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFA 215 (568)
Q Consensus 145 ------~~~~~~~w~~~l~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~ 215 (568)
..+...+.. ++.++ .+. ....+... .+. .++.+++..++++.++...+-.-|+|..+++...+.-+
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~---~~~-~~~~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~ 198 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASA---LSN-AFNVPKLVTGIVLTVLTALIIFGGLKRIAKISSVVVPF 198 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHH---HHH-HcCCcHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 122222222 22221 111 11111111 010 11345667777777777777666999999999988887
Q ss_pred HHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhH------HHHhHHHHhhh---hhhhhHHhhhhhhh
Q psy6064 216 NLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNG------IVTGAAKCFFG---FVGFDGIATTGEET 286 (568)
Q Consensus 216 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~------~~~~~~~~~~~---~~G~e~~~~~a~E~ 286 (568)
.....++..+.... .+.++..+....++.+.-+... .-.|..| +-.|+.=..|+ =.|....+|.+.|+
T Consensus 199 m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a--~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~ 275 (425)
T TIGR00835 199 MALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDA--AAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQV 275 (425)
T ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchh--hHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcC
Confidence 76665444332222 1211111111111111100000 0012222 12233333443 34777788889999
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCC-C-cCCCCCHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHhc
Q psy6064 287 RNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYY-E-QNADAPFP-AIFDRLGWPVMKWLVTVGSLFALFTAMFGAFF 363 (568)
Q Consensus 287 knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~-~-~~~~~~~~-~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~ 363 (568)
++|.|.-=.+++...+=+.++-.+..+.+...-.++ . ..++..+. .+++...++++..++.+.+++-.+++.+++.+
T Consensus 276 ~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~~~y 355 (425)
T TIGR00835 276 SHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIGWYY 355 (425)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999875433333222212222222222222111122 1 11222333 44666566688899999999999999999988
Q ss_pred hhHHHHHHHH
Q psy6064 364 PLPRILYAMS 373 (568)
Q Consensus 364 ~~sR~l~a~a 373 (568)
..-+-+.-+-
T Consensus 356 yge~~~~yl~ 365 (425)
T TIGR00835 356 YGEKNAEFLK 365 (425)
T ss_pred HHHHHHHHhc
Confidence 8877776653
No 62
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=98.00 E-value=0.0049 Score=63.69 Aligned_cols=286 Identities=16% Similarity=0.172 Sum_probs=151.2
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh-HHHHHHHHHHHHHHhhh-------cc----c--chh----
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSVV-------KN----P--NLR---- 143 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~-~~~~~li~~v~~~~~a~-------~~----P--~~~---- 143 (568)
+-++..+.++.++.++++.+|+|-...... +...|||+ ++|-|+.+.+-+. +.+ -| + ++.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAt-AI~~GGPGAvFWMWi~Al~Gma-t~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVAT-AIALGGPGAVFWMWIVALFGMA-TKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHH-HHHcCCCccHHHHHHHHHHHHH-HHHHHHHHHhheeEeCCCCCCcCChH
Confidence 345789999999999999999998777766 55889997 6778877655332 211 12 1 111
Q ss_pred -h--------HHHHHHHHHHHHHHh-hhhHHH-HHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q psy6064 144 -V--------LNSDVKAISNQIDSL-MGNAYQ-KSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVL 212 (568)
Q Consensus 144 -Y--------~~~~~~~w~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~ 212 (568)
| ..+...+....+..- .++... +.+...+ ...++.+++..++++.++...+-+-|+|..+++....
T Consensus 136 yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~---~~af~~~~~~~gi~la~l~~~VI~GGi~rIa~v~~~v 212 (452)
T COG1115 136 YYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASAL---ANAFGIPPLVTGIVLALLVALVIFGGIKRIAKVSSKV 212 (452)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 2 222222222222111 111111 1111111 1123445678888888888999999999999988887
Q ss_pred HHHHHHHHHHHHhhhccc-ccC--CCCcccccCCCCCCCCCCCCccccc-hhHHHHhHHHHhhhh---hhhhHHhhhhhh
Q psy6064 213 TFANLGTVAIIVFSGLFR-LNP--ANWTIRREAIPPGVRGGSGGFAPFG-VNGIVTGAAKCFFGF---VGFDGIATTGEE 285 (568)
Q Consensus 213 ~~~~~~~l~~~~i~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~p~g-~~~~~~~~~~~~~~~---~G~e~~~~~a~E 285 (568)
.-+.-+.-++..+..+.. .+. +-......+-|.. +.-.+++.... ...+..|+.=..|+= .|....++.+.+
T Consensus 213 VPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~-~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~ 291 (452)
T COG1115 213 VPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGP-KAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAK 291 (452)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCc-hhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhc
Confidence 666654433333322221 110 0000000000000 00011111000 012344444445533 366667777888
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcC--CCCCHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHh
Q psy6064 286 TRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQN--ADAPFP-AIFDRLGWPVMKWLVTVGSLFALFTAMFGAF 362 (568)
Q Consensus 286 ~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~--~~~~~~-~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 362 (568)
+++|.|.-=..+....+=+.++--...+.++..-.++... +...+. ++++...++++..++.+.+++-.+++.++..
T Consensus 292 ~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg~y 371 (452)
T COG1115 292 TDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTILGWY 371 (452)
T ss_pred CCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 8899774333322222212222222222222222222222 233343 4567778889999999999999999999998
Q ss_pred chhHHHHHHHH
Q psy6064 363 FPLPRILYAMS 373 (568)
Q Consensus 363 ~~~sR~l~a~a 373 (568)
+-.-|-+.-+.
T Consensus 372 yyge~~~~fl~ 382 (452)
T COG1115 372 YYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHh
Confidence 88887776654
No 63
>PRK11017 codB cytosine permease; Provisional
Probab=97.90 E-value=0.044 Score=57.85 Aligned_cols=38 Identities=13% Similarity=-0.068 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q psy6064 187 APIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIV 224 (568)
Q Consensus 187 a~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~ 224 (568)
.+++.++.+.....|.|...+++++......+.++...
T Consensus 124 ~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~ 161 (404)
T PRK11017 124 IVLSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSV 161 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666778899999998887776655444433
No 64
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.80 E-value=0.029 Score=55.65 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=66.0
Q ss_pred hhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhChhHHHHHHHHHHHHHH
Q psy6064 275 GFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFAL 354 (568)
Q Consensus 275 G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~ 354 (568)
.......+++|+|++ |+.-+|-+.+-++.+++..+.+..+....| +-.+.+-|..++.+... +....++.+...+..
T Consensus 194 ~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~I 270 (349)
T COG3949 194 AVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEI 270 (349)
T ss_pred HhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHH
Confidence 444556778999986 556688888888888888888888877665 22334668888888776 666677788888888
Q ss_pred HHHHHHHhchhH
Q psy6064 355 FTAMFGAFFPLP 366 (568)
Q Consensus 355 ~~~~~~~~~~~s 366 (568)
.++..+.+++-+
T Consensus 271 ytT~vg~iy~l~ 282 (349)
T COG3949 271 YTTTVGLIYGLA 282 (349)
T ss_pred HHHHHHHHHHHH
Confidence 888877776644
No 65
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.78 E-value=0.052 Score=58.82 Aligned_cols=96 Identities=13% Similarity=0.222 Sum_probs=56.7
Q ss_pred hhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHH-h--hhccCCCcCCCCCHHHHHHHhChhHHHHHHHHHHH
Q psy6064 275 GFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVI-T--MIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSL 351 (568)
Q Consensus 275 G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~-~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 351 (568)
+.....+-.=..||+ |+..|+..++.....++++...+.- . ...|+. ...+..+.....+..+++..-++.++++
T Consensus 252 ~~p~~~qR~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~-~~~~~~~p~l~~~~lp~~l~gl~~a~~~ 329 (483)
T PRK09442 252 GLPHTAVRCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDL-TVPDKVIPTLMLKVLPPFAAGIFLAAPM 329 (483)
T ss_pred CCCHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCccchHHHHHHHHcCHHHHHHHHHHHH
Confidence 333333333346664 4567787777666655555433321 1 112432 2234456666777778888888888888
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhc
Q psy6064 352 FALFTAMFGAFFPLPRILYAMSRD 375 (568)
Q Consensus 352 ~~~~~~~~~~~~~~sR~l~a~ard 375 (568)
.+.+++..+.+.+.+-. ++||
T Consensus 330 aA~mST~~s~l~~~ss~---~~~D 350 (483)
T PRK09442 330 AAIMSTVDSQLLQSSST---IIKD 350 (483)
T ss_pred HHHHHHHHHHHHHHHHH---HHHH
Confidence 88888887777665543 4455
No 66
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.52 E-value=0.067 Score=56.12 Aligned_cols=221 Identities=15% Similarity=0.125 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHH
Q psy6064 183 PDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGI 262 (568)
Q Consensus 183 ~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 262 (568)
..+..+++..+...+.+...|...++-++++-+.++.++++++.++.....+.-.....+ .+ .|. ..|+
T Consensus 118 ~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y-------~~---~~f-~~Gf 186 (427)
T PF05525_consen 118 LLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAY-------AS---NPF-FKGF 186 (427)
T ss_pred hhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhh-------hh---hHH-HHHH
Confidence 335666777788888889999999999999999999999999999886543221111000 00 011 1122
Q ss_pred HHhH----HHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH----HHHHHHHHHHHHHHHHhhhccC-CC-cCCCCCHHH
Q psy6064 263 VTGA----AKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL----SLLIVFVCYFSIAVVITMIVPY-YE-QNADAPFPA 332 (568)
Q Consensus 263 ~~~~----~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~----s~~~~~v~y~l~~~~~~~~~p~-~~-~~~~~~~~~ 332 (568)
..|. ..+...|...=..+--....||+ |++.|.+.. +...-.++|......-...... .+ .+...-+.+
T Consensus 187 ~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~ 265 (427)
T PF05525_consen 187 LEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQ 265 (427)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHH
Confidence 2221 23333333333333333334443 333444444 4444444454444332222221 11 111224455
Q ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHH-HHHHHHHHHHHhc
Q psy6064 333 IFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTAL-SGVITAVMSAVFK 411 (568)
Q Consensus 333 ~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~-~~~i~~~~~~~~~ 411 (568)
+.+...|+.+..++.+.+.++|+++..+-..+++....+ ..| +.++....+ ..+++.+++ ...
T Consensus 266 i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~-------------~~~--kisY~~~v~i~~i~S~~ia-n~G 329 (427)
T PF05525_consen 266 IANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSE-------------LFP--KISYKVWVIIFTIFSFIIA-NLG 329 (427)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------Hhc--ccChHHHHHHHHHHHHHHH-HhC
Confidence 667778899999999999999999999999988876654 332 344444333 334444433 334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6064 412 LDQLVDMMSIGTLLAYIIVA 431 (568)
Q Consensus 412 ~~~l~~~~~~~~~i~y~~~~ 431 (568)
++.+++++.=...+.|-...
T Consensus 330 l~~Ii~~s~PiL~~iYP~~I 349 (427)
T PF05525_consen 330 LDQIIKISVPILMFIYPVAI 349 (427)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 88888888777777774433
No 67
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=97.32 E-value=8.9e-05 Score=78.39 Aligned_cols=177 Identities=13% Similarity=0.164 Sum_probs=104.4
Q ss_pred chhHHHHhHHHHhhhhhhhhHHhhhhhhhcCccc--chhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHH
Q psy6064 258 GVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKR--NIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFD 335 (568)
Q Consensus 258 g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r--~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~ 335 (568)
.+.++..++....|+|.+......+.+|+|+|+| ++.|+...+..++.++|++..+.-....+++. ++ .+..
T Consensus 190 ~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~---~~---~il~ 263 (409)
T PF01490_consen 190 SFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSV---QG---NILL 263 (409)
T ss_pred hhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeee---cc---hhhh
Confidence 4567889999999999999999999999999876 45699999999999999999888777665431 11 2223
Q ss_pred HhChh-HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcC-----ccchhhhccCCCCccchHHHHHHHHHHHHHHHH
Q psy6064 336 RLGWP-VMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDG-----LLYERLSYVSSRTQTPLLSTALSGVITAVMSAV 409 (568)
Q Consensus 336 ~~~~~-~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg-----~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~ 409 (568)
+.... +...+..+...+..+.+.--..+...+.+...-++. .-++.-.+ ++..+.-.+ +.+.....++....
T Consensus 264 n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~iA~~v 341 (409)
T PF01490_consen 264 NLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPS-SRWLRYLIR-IILVLLSFLIAIFV 341 (409)
T ss_pred cCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccc-cceeeeeee-cchhhhhhhhhhhc
Confidence 33222 234444444444444444334444455554443321 11100000 000011111 11111111222333
Q ss_pred hcHHHHHHHHHHH--HHHHHHHHHHHHhhhcccCC
Q psy6064 410 FKLDQLVDMMSIG--TLLAYIIVAICVLLLRYSGD 442 (568)
Q Consensus 410 ~~~~~l~~~~~~~--~~i~y~~~~~~~l~~r~~~~ 442 (568)
.+++.++++.+.. ..++|.++.+..++.+++++
T Consensus 342 p~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 342 PNFGDIISLVGALFGSFISFILPALLYLKLFKRKR 376 (409)
T ss_pred cchhhhhcccchHHHHhHHHHHHHHHHHHhhcccc
Confidence 4688888886433 47889999998888877664
No 68
>PRK10484 putative transporter; Provisional
Probab=97.13 E-value=0.59 Score=51.16 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=47.6
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHH---HHhhhccCCCcCCCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHh
Q psy6064 286 TRNPKRNIPLAIILSLLIVFVCYFSIAV---VITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAF 362 (568)
Q Consensus 286 ~knP~r~iP~ai~~s~~~~~v~y~l~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 362 (568)
.||+ |+..|+...+.....+.++...+ ......|++..+.+..+.....+..+++..-++..+++.+.+++..+.+
T Consensus 270 ak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s~l 348 (523)
T PRK10484 270 AKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNGFL 348 (523)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4553 55667777665544444333221 1122234322233445666666777777777777888888888887777
Q ss_pred chhHHH
Q psy6064 363 FPLPRI 368 (568)
Q Consensus 363 ~~~sR~ 368 (568)
.+.|-.
T Consensus 349 ~s~st~ 354 (523)
T PRK10484 349 NSASTL 354 (523)
T ss_pred HHHHHH
Confidence 666654
No 69
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.12 E-value=0.55 Score=50.66 Aligned_cols=92 Identities=11% Similarity=0.187 Sum_probs=56.7
Q ss_pred hhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhh---ccCCCcCCCCCHHHHHHHhChhHHHHHHHHHHH
Q psy6064 275 GFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMI---VPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSL 351 (568)
Q Consensus 275 G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 351 (568)
+.....+-.-..||+ |+..|+...+..+..++++...+.-... .|+ ....+..+.....+..+++..-++..+++
T Consensus 251 ~~p~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~-~~~~d~~~p~~~~~~lp~~~~gl~~a~ll 328 (471)
T TIGR02119 251 GLPQTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPD-LTVPDKVIPLLAIKVLPPILAGIFLAAPM 328 (471)
T ss_pred CchHHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccC-CCCccchHHHHHHHHchHHHHHHHHHHHH
Confidence 333344455556664 6778888888766666655443322111 222 11235556666667777888888888888
Q ss_pred HHHHHHHHHHhchhHHH
Q psy6064 352 FALFTAMFGAFFPLPRI 368 (568)
Q Consensus 352 ~~~~~~~~~~~~~~sR~ 368 (568)
.+.+++..+.+.+.+-.
T Consensus 329 aA~mST~~s~l~~~ss~ 345 (471)
T TIGR02119 329 AAIMSTVNSLLLQSSST 345 (471)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888777666644
No 70
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.10 E-value=0.55 Score=50.20 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=26.2
Q ss_pred cccccccChhHHHHHhhcccccchhhhhhhHhHhhhc-Ch-hHHHHHHHHHHH
Q psy6064 81 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQA-GP-SVVISFAIAAVT 131 (568)
Q Consensus 81 ~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~-Gp-~~~~~~li~~v~ 131 (568)
++-+|+.++++.+.+=++..+...-+..-+... ..+ +. .++++.+++.++
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i 59 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGL-PLGLSWWQSVIAIILGNLL 59 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHH
Confidence 345577889998888666655443333333211 111 22 255665555443
No 71
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.07 E-value=0.55 Score=49.63 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=50.5
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHHHhhh---cc----CCC----cCCCCCHHHHHHHhChhHHHHHHHHHHHHHH
Q psy6064 286 TRNPKRNIPLAIILSLLIVFVCYFSIAVVITMI---VP----YYE----QNADAPFPAIFDRLGWPVMKWLVTVGSLFAL 354 (568)
Q Consensus 286 ~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~---~p----~~~----~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~ 354 (568)
.|| +|+..|+...+.....+++++..+.-... .| ..+ .+.+..+.....+..+++..-++.++++.+.
T Consensus 229 ~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~ 307 (407)
T TIGR00813 229 AKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAV 307 (407)
T ss_pred cCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence 444 46677888887766666554433222211 22 111 1234455566677777888888888888888
Q ss_pred HHHHHHHhchhHHH
Q psy6064 355 FTAMFGAFFPLPRI 368 (568)
Q Consensus 355 ~~~~~~~~~~~sR~ 368 (568)
+++..+.+.+.+-.
T Consensus 308 mST~~s~l~a~ss~ 321 (407)
T TIGR00813 308 MSTLSSQLNSASTV 321 (407)
T ss_pred HHhhhhhHHHHHHH
Confidence 88888777766654
No 72
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=96.99 E-value=0.27 Score=52.83 Aligned_cols=239 Identities=13% Similarity=0.075 Sum_probs=127.8
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCC--CcccccCCCCCCCCCCCCc
Q psy6064 177 SFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPAN--WTIRREAIPPGVRGGSGGF 254 (568)
Q Consensus 177 ~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 254 (568)
|..+.....+++++++.+..+.-+|....+++ +.-+.++=++.+.+.|+...-.+. ....++...-++ +
T Consensus 126 p~~~~~Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f------~ 196 (534)
T PF02705_consen 126 PSLEPYVVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRF------F 196 (534)
T ss_pred CCCcceehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHH------H
Confidence 34444455788888888888999888776665 333333333333444443221110 000000000000 0
Q ss_pred cccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHH
Q psy6064 255 APFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIF 334 (568)
Q Consensus 255 ~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~ 334 (568)
..++..++ ..+..++.+.+|-|+.-. +-=+-.+|++.++-..-+.-+.++--+..-++...-|.. ..+.|
T Consensus 197 ~~~~~~~~-~~LG~V~L~~TGaEALyA--DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~-------~~npF 266 (534)
T PF02705_consen 197 IRNGWIGF-FVLGAVFLCVTGAEALYA--DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEA-------VSNPF 266 (534)
T ss_pred HHcCCchh-hhcchHHHHHhhHHHHHh--hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcch-------hhhHH
Confidence 11122222 234567778889998642 222234566666655544545444444455554443421 23333
Q ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchh-hhccCCCC-c---cchHHHHHHHHHHHHHHHH
Q psy6064 335 DRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYER-LSYVSSRT-Q---TPLLSTALSGVITAVMSAV 409 (568)
Q Consensus 335 ~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~~v~~r~-~---~P~~Ail~~~~i~~~~~~~ 409 (568)
....++++.+.+.+.+.++..-+.-+...++=-+..+.-+-|.+|+. ..+++++. | .|..--++...+..+...+
T Consensus 267 f~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F 346 (534)
T PF02705_consen 267 FLLIPEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGF 346 (534)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEE
Confidence 34444566665555555555555555566666667777788999954 44444333 2 5666555555555555555
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHH
Q psy6064 410 FKLDQLVDMMSIGTLLAYIIVAICV 434 (568)
Q Consensus 410 ~~~~~l~~~~~~~~~i~y~~~~~~~ 434 (568)
.+-+.+.+..+++......++.+-.
T Consensus 347 ~~S~~la~AYGiAVt~tM~iTT~L~ 371 (534)
T PF02705_consen 347 RSSSNLAAAYGIAVTGTMLITTILL 371 (534)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888777776665544
No 73
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.82 E-value=0.87 Score=47.96 Aligned_cols=221 Identities=12% Similarity=0.064 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHH
Q psy6064 185 FIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVT 264 (568)
Q Consensus 185 ~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~ 264 (568)
+..+++..+...+....-|...++-++++-+.++.++++++.++.....+ ...+.+....+ .-..|+. .|.. -+-
T Consensus 124 ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~-~~~~~~~y~~~--~f~~Gf~-eGY~-TMD 198 (439)
T PRK15433 124 IYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGS-ISTATEAYQNA--AFSNGFV-NGYL-TMD 198 (439)
T ss_pred HHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCcchhhhhh--hHHHHHH-hhHH-HHH
Confidence 45667777778888888999999999999999999999998888864322 11110000000 0000000 0111 222
Q ss_pred hHHHHhhhhhhhhHHhhhhhhhcCccc---chhhHHHHHHHHHHHHHHHHHHHHhhhccCCC-cCCCCC-HHHHHHHhCh
Q psy6064 265 GAAKCFFGFVGFDGIATTGEETRNPKR---NIPLAIILSLLIVFVCYFSIAVVITMIVPYYE-QNADAP-FPAIFDRLGW 339 (568)
Q Consensus 265 ~~~~~~~~~~G~e~~~~~a~E~knP~r---~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~-~~~~~~-~~~~~~~~~~ 339 (568)
++....| ...-..+--....||+++ ..-++-..+...-.++|......-....+..+ ..+... .........+
T Consensus 199 alaal~F--g~iii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G 276 (439)
T PRK15433 199 TLGAMVF--GIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFG 276 (439)
T ss_pred HHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhC
Confidence 2333333 222222223334555432 22233344444444555554443322222111 112222 2333455677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHH-HHHHHHHHHHHHHHhcHHHHHHH
Q psy6064 340 PVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLS-TALSGVITAVMSAVFKLDQLVDM 418 (568)
Q Consensus 340 ~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~A-il~~~~i~~~~~~~~~~~~l~~~ 418 (568)
+++..++.+.+.++|+++..+...+.++.+...- ..|+.. +++..+++.++.-+ .++.++++
T Consensus 277 ~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~----------------~isY~~~v~i~~l~S~~lSn~-G~~~II~~ 339 (439)
T PRK15433 277 GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV----------------PLSYRTLVFILGGFSMVVSNL-GLSQLIQI 339 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------CCcHHHHHHHHHHHHHHHHHh-HHHHHHHH
Confidence 8999999999999999999999999987655421 133332 23333334433333 47888887
Q ss_pred HHHHHHHHHHH
Q psy6064 419 MSIGTLLAYII 429 (568)
Q Consensus 419 ~~~~~~i~y~~ 429 (568)
..=...+.|=+
T Consensus 340 s~PiL~~iYP~ 350 (439)
T PRK15433 340 SVPVLTAIYPP 350 (439)
T ss_pred HHHHHHHHhHH
Confidence 76666666633
No 74
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.51 E-value=1.4 Score=46.20 Aligned_cols=168 Identities=15% Similarity=0.201 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHHhhhcccccCC-----CCcccccCCCCCCCCCCCCccccchhH
Q psy6064 188 PIFVAVITGLLSWGASE-SAKVNNVLTFANLGTVAIIVFSGLFRLNPA-----NWTIRREAIPPGVRGGSGGFAPFGVNG 261 (568)
Q Consensus 188 ~~~i~~~~~ln~~g~~~-~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~p~g~~~ 261 (568)
.+++++...+-.+|++. ..|.++++.-..++.++++.+-.+...+.. .++++. +...+ ...
T Consensus 149 ~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~-----------s~l~~--~~v 215 (439)
T COG0733 149 LLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDF-----------SKLTD--PKV 215 (439)
T ss_pred HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCH-----------HHcCc--hhh
Confidence 45566666777788886 777888877776666666666555532211 111111 11111 344
Q ss_pred HHHhHHHHhhhhh-hhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCC-C------CHHHH
Q psy6064 262 IVTGAAKCFFGFV-GFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNAD-A------PFPAI 333 (568)
Q Consensus 262 ~~~~~~~~~~~~~-G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~-~------~~~~~ 333 (568)
+..++..++|+.+ |+-.....+.-.++ +.|+++.-......-..+-++.-+.+.-.+-.-..+.+ . .++.+
T Consensus 216 ~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~i 294 (439)
T COG0733 216 WLAALGQAFFSLSLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAV 294 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHH
Confidence 7778888888875 77777666666654 67888887777776666655554443333322111121 1 34566
Q ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q psy6064 334 FDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAM 372 (568)
Q Consensus 334 ~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ 372 (568)
+++++ ...++.+...++...+.+++..+.-...-+.
T Consensus 295 f~~mp---~G~~~~~lFFl~l~fAalTS~iSmlE~~va~ 330 (439)
T COG0733 295 FNQMP---LGTLFGILFFLLLLFAALTSAISMLEVLVAA 330 (439)
T ss_pred HHhCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 3344444444444444444444444444433
No 75
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=96.34 E-value=1.6 Score=45.16 Aligned_cols=220 Identities=15% Similarity=0.056 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccc-hhHHH
Q psy6064 185 FIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFG-VNGIV 263 (568)
Q Consensus 185 ~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~~~~ 263 (568)
+..+++..+...+.+...|..-|+-++++-++++.++.+++..+.....+.-.....+.... +. .| ..|+.
T Consensus 122 ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~p-------f~-~GfleGY~ 193 (431)
T COG1114 122 IFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQP-------FS-KGFLEGYL 193 (431)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhCh-------HH-HHHhcchH
Confidence 45556667777888888999999999999999998888888877654432211111100000 00 01 11222
Q ss_pred HhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHH--hhhccCCCcCCCC----CHHHHHHHh
Q psy6064 264 TGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVI--TMIVPYYEQNADA----PFPAIFDRL 337 (568)
Q Consensus 264 ~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~--~~~~p~~~~~~~~----~~~~~~~~~ 337 (568)
+.=..+..+|...-..+.-..-.++++ +..|-...+-++..+.-.+.-..+ .++...+.....+ -+.+..+..
T Consensus 194 TMDaLAal~FgivIv~alk~~g~~~~~-~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~ 272 (431)
T COG1114 194 TMDALAALAFGIVIVNALKSKGVTTKK-QIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHL 272 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHH
Confidence 222334444444333333333344433 344444444333333322222222 2222221111111 222334556
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHH
Q psy6064 338 GWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVD 417 (568)
Q Consensus 338 ~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~ 417 (568)
.|+.+..++.+.+.++|+++..+-..+++. +|+|.-||-.=..++ .+..+++.++. ...++.++.
T Consensus 273 fG~~G~~lL~~iv~lACLTTaiGLi~a~ae-------------fF~~~~p~~SY~~~v-~if~i~sflva-n~GL~~Ii~ 337 (431)
T COG1114 273 FGSYGSILLGLIVFLACLTTAVGLIVACAE-------------FFSKLVPKLSYKTWV-IIFTLISFLVA-NLGLEQIIK 337 (431)
T ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcccccHHHHH-HHHHHHHHHHH-HhhHHHHHH
Confidence 778889999999999999999998888875 444544322222222 22333333333 224778877
Q ss_pred HHHHHHHHHHH
Q psy6064 418 MMSIGTLLAYI 428 (568)
Q Consensus 418 ~~~~~~~i~y~ 428 (568)
++.=.....|-
T Consensus 338 isvPvL~~iYP 348 (431)
T COG1114 338 ISVPVLTAIYP 348 (431)
T ss_pred HHHHHHHHHhH
Confidence 77666666663
No 76
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.29 E-value=0.067 Score=56.51 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=46.4
Q ss_pred cchhhHHHHHHHHHHHHHHH------HHHHHhhhccCC----CcCCCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q psy6064 291 RNIPLAIILSLLIVFVCYFS------IAVVITMIVPYY----EQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFG 360 (568)
Q Consensus 291 r~iP~ai~~s~~~~~v~y~l------~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~ 360 (568)
|+..|+...+.....+++.. ....+....|+. +.+.+..+.....+..+++..-++.+.++.+.+++..+
T Consensus 232 ~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s 311 (406)
T PF00474_consen 232 KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADS 311 (406)
T ss_dssp HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHH
Confidence 55777777665444444333 112222222321 11223345566667777888878888888888888888
Q ss_pred HhchhHHHHHHHHhcC
Q psy6064 361 AFFPLPRILYAMSRDG 376 (568)
Q Consensus 361 ~~~~~sR~l~a~ardg 376 (568)
.+.+.+-. ++||=
T Consensus 312 ~l~a~ss~---~~~Di 324 (406)
T PF00474_consen 312 LLLAISSI---FSRDI 324 (406)
T ss_dssp HHHHHHHH---HHHHC
T ss_pred HHhhhhhh---hhHHh
Confidence 88777654 35663
No 77
>KOG1305|consensus
Probab=96.21 E-value=0.72 Score=48.49 Aligned_cols=63 Identities=8% Similarity=0.153 Sum_probs=53.6
Q ss_pred hHHHHhHHHHhhhhhhhhHHhhhhhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy6064 260 NGIVTGAAKCFFGFVGFDGIATTGEETRNPK-RNIPLAIILSLLIVFVCYFSIAVVITMIVPYY 322 (568)
Q Consensus 260 ~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~-r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~ 322 (568)
.+++.++...+++|+........-.|+|||+ |++-+....+...+.++|......-.....+.
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~ 257 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDL 257 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccc
Confidence 4588899999999999999999999999996 67888888999999999998887766655543
No 78
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.02 E-value=3 Score=45.29 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q psy6064 327 DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRIL 369 (568)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l 369 (568)
+..+........+++..-++...++.+..++..+.+...+-.+
T Consensus 311 ~~~~~~l~~~~~p~~~~g~~~~ailaAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 311 ELVFPYLILALFPPWIAGLLLAAILAAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3455566677788888877777777777777766666655443
No 79
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.88 E-value=2.6 Score=43.62 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred CCHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q psy6064 328 APFPAIFDRLGW-PVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMS 373 (568)
Q Consensus 328 ~~~~~~~~~~~~-~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~a 373 (568)
....+.++...| ++...++.++.+.+.+++..+...+.++.+...-
T Consensus 239 ~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 239 AQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 355666777777 7999999999999999999999999888877655
No 80
>PLN00148 potassium transporter; Provisional
Probab=95.87 E-value=0.23 Score=55.39 Aligned_cols=230 Identities=12% Similarity=0.031 Sum_probs=113.1
Q ss_pred chhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhH
Q psy6064 182 YPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNG 261 (568)
Q Consensus 182 ~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~ 261 (568)
....+++++++.+..+.-+|....+++---..++=++.+..+.+..++..+++-+...++..-..+ +..++..+
T Consensus 196 ~vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f------f~~~~~~g 269 (785)
T PLN00148 196 ELVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKF------FRVTGKDG 269 (785)
T ss_pred eehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHH------HHhCCCce
Confidence 344678888888888888887766655333333333333333333333322221111000000000 00011111
Q ss_pred HHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhChhH
Q psy6064 262 IVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPV 341 (568)
Q Consensus 262 ~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 341 (568)
+..+..++.+.+|-|+.- |+==+=.+|.+.+|-..-+.-+.++--+..-++...-|.+ .++|+. ....++
T Consensus 270 -~~~LGgV~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~~---~~npFf----~~iP~~ 339 (785)
T PLN00148 270 -WISLGGILLSITGTEAMF--ADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIPS---IPNSFY----DSIPDP 339 (785)
T ss_pred -EEeecchheeccchhhhh--hhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCccc---ccCcHH----HhCCch
Confidence 113445667888999752 2222335566766666555555555555555555544421 233433 334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchh-hhccCCCC-c---cchHHHHHHHHHHHHHHHHhcHHHHH
Q psy6064 342 MKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYER-LSYVSSRT-Q---TPLLSTALSGVITAVMSAVFKLDQLV 416 (568)
Q Consensus 342 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~~v~~r~-~---~P~~Ail~~~~i~~~~~~~~~~~~l~ 416 (568)
..+-+.+.+.++..-+.-+.+.++=-+..+.-+-|.+|+. .-+++++. | .|..--++...+..+...+.+-+.+.
T Consensus 340 ~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la 419 (785)
T PLN00148 340 VFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIG 419 (785)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHH
Confidence 5554544444444444444444444555555667999954 44444332 2 56655555444444444455677777
Q ss_pred HHHHHHHHHHH
Q psy6064 417 DMMSIGTLLAY 427 (568)
Q Consensus 417 ~~~~~~~~i~y 427 (568)
+..+++.....
T Consensus 420 ~AYGiAV~~vM 430 (785)
T PLN00148 420 NAYGLACMTVM 430 (785)
T ss_pred HhhhhheeeHH
Confidence 77666543333
No 81
>PLN00149 potassium transporter; Provisional
Probab=95.84 E-value=1.9 Score=48.33 Aligned_cols=228 Identities=13% Similarity=0.091 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcc---cccCCCCcccccCCCCCC--CCCCCCccccc
Q psy6064 184 DFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLF---RLNPANWTIRREAIPPGV--RGGSGGFAPFG 258 (568)
Q Consensus 184 ~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~p~g 258 (568)
..+++++++++..+.-+|....+++ +.-+.++=++.+...|++ ..++.-+...++..-..+ .++.. |
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg~~---FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~-----g 270 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVGFL---FAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRG-----G 270 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCc-----e
Confidence 3578888888888888887766554 333333333333444443 322221111000000000 01111 1
Q ss_pred hhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhC
Q psy6064 259 VNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLG 338 (568)
Q Consensus 259 ~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 338 (568)
| ..+..++.+.+|-|+.- |+==+=.+|.+..|-..-+.=+.++--+..-++...-|....+.++|+ ....
T Consensus 271 ~----~~LGgV~L~iTG~EALy--ADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pF----y~~i 340 (779)
T PLN00149 271 W----MSLGGILLCITGSEAMF--ADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGF----YVSV 340 (779)
T ss_pred e----Eeecchhhcccchhhhh--hcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcH----HHhC
Confidence 2 13345667888999752 222233566676776665655666555566666554443211122243 3334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchh-hhccCCCCc----cchHHHHHHHHHHHHHHHHhcHH
Q psy6064 339 WPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYER-LSYVSSRTQ----TPLLSTALSGVITAVMSAVFKLD 413 (568)
Q Consensus 339 ~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~~v~~r~~----~P~~Ail~~~~i~~~~~~~~~~~ 413 (568)
.++..+-+.+.+.++..-+.-+.+.++=-+..+.-+-|.+|+. .-+++++.. .|..--++...+..+...+-+-+
T Consensus 341 P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~ 420 (779)
T PLN00149 341 PEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTK 420 (779)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChH
Confidence 4455555555444444444444444444555555667999954 334443332 46555444444444444444677
Q ss_pred HHHHHHHHHHHHHHHH
Q psy6064 414 QLVDMMSIGTLLAYII 429 (568)
Q Consensus 414 ~l~~~~~~~~~i~y~~ 429 (568)
.+.+..+++.....++
T Consensus 421 ~l~~AYGiAV~~vM~i 436 (779)
T PLN00149 421 RLGNASGLAVITVMLV 436 (779)
T ss_pred HHHHHhhhhhehHHHH
Confidence 7777776665444433
No 82
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=95.79 E-value=0.33 Score=53.70 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=119.0
Q ss_pred cchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchh
Q psy6064 181 SYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVN 260 (568)
Q Consensus 181 ~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~ 260 (568)
.....+++++++++..+.-+|....+++---...+=++.+.++.+..+...++.-.+..++..--.+ +..++..
T Consensus 166 ~~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f------~~~~~~~ 239 (688)
T TIGR00794 166 TWVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQF------FIEYGTV 239 (688)
T ss_pred CeehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHH------HHHCCCc
Confidence 3445678888888888898887766655333333333333333333333211111110000000000 0001111
Q ss_pred HHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhChh
Q psy6064 261 GIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWP 340 (568)
Q Consensus 261 ~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 340 (568)
+| ..+..++.+.+|-|+.- |+-=+=.+|.+.+|-..-+.-+.++--+..-++...-|.. ..+|+. ....+
T Consensus 240 ~~-~~LG~V~L~iTGaEALy--ADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~---~~NpFf----~~~P~ 309 (688)
T TIGR00794 240 GW-VSLGGVVLSITGVEAMF--ADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEA---IKNPFF----LSIPD 309 (688)
T ss_pred ee-eeccchhheeccHhhhh--cccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcch---hcCcHH----HhCch
Confidence 11 13445677888988752 2222334566666665555555555445555555443321 133443 33445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchh-hhccCCCC-c---cchHHHHHHHHHHHHHHHHhcHHHH
Q psy6064 341 VMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYER-LSYVSSRT-Q---TPLLSTALSGVITAVMSAVFKLDQL 415 (568)
Q Consensus 341 ~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~~v~~r~-~---~P~~Ail~~~~i~~~~~~~~~~~~l 415 (568)
|..+.+.+.+.++..-+.-+.+.++=-+..+.-+-|.+|+. ..+++++. | .|..--++...+..+...+.+-+.+
T Consensus 310 ~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~l 389 (688)
T TIGR00794 310 WALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNL 389 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHH
Confidence 66665555555555545545555555566666778999954 44555442 2 4665545444444444445567788
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6064 416 VDMMSIGTLLAYIIVAI 432 (568)
Q Consensus 416 ~~~~~~~~~i~y~~~~~ 432 (568)
.+..+++.....+++.+
T Consensus 390 a~AYGiaVt~tM~iTT~ 406 (688)
T TIGR00794 390 GAAYGIAVTGTFLVTTC 406 (688)
T ss_pred HHHhhhhhhhhhHHHHH
Confidence 88877776555555444
No 83
>PRK00701 manganese transport protein MntH; Reviewed
Probab=95.70 E-value=3.6 Score=43.82 Aligned_cols=38 Identities=8% Similarity=-0.101 Sum_probs=25.4
Q ss_pred CHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhH
Q psy6064 329 PFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLP 366 (568)
Q Consensus 329 ~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~s 366 (568)
...+.++...|++...++.++.+.+.+++..+..++..
T Consensus 295 ~~a~~L~p~~G~~a~~lFaiGL~aag~sS~i~~~~a~~ 332 (439)
T PRK00701 295 DAYLLLSPLLGAAAATLFGIALLASGLSSTVVGTLAGQ 332 (439)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHhHHHhHHHHHHH
Confidence 45556666777888888888887776766555444433
No 84
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.68 E-value=3.4 Score=43.42 Aligned_cols=41 Identities=15% Similarity=-0.071 Sum_probs=24.7
Q ss_pred CHHHHHHHh---ChhHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q psy6064 329 PFPAIFDRL---GWPVMKWLVTVGSLFALFTAMFGAFFPLPRIL 369 (568)
Q Consensus 329 ~~~~~~~~~---~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l 369 (568)
+..+++... .++.+..++.+..+.+..++....-++...++
T Consensus 270 ~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~ 313 (416)
T COG1914 270 DAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVM 313 (416)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHH
Confidence 444444333 35667777777777777777666666555533
No 85
>PRK12488 acetate permease; Provisional
Probab=95.63 E-value=4.6 Score=44.52 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=24.2
Q ss_pred cccccChhHHHHHhhcccccchhhhhhhHhHhhh
Q psy6064 83 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQ 116 (568)
Q Consensus 83 l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~ 116 (568)
-.|++++|.......+..+++.-|.......+..
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~ 98 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMN 98 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999998877777777777777665545443
No 86
>PLN00151 potassium transporter; Provisional
Probab=95.58 E-value=0.74 Score=51.56 Aligned_cols=228 Identities=12% Similarity=0.070 Sum_probs=112.4
Q ss_pred chhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCccccc----CCCCCCCCCCCCcccc
Q psy6064 182 YPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRRE----AIPPGVRGGSGGFAPF 257 (568)
Q Consensus 182 ~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~ 257 (568)
....+++++++++..+.-+|....+++---..++=++.+..+.+..++..++.-+...++ .++. .++..
T Consensus 273 ~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~--~~~~~----- 345 (852)
T PLN00151 273 AVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFK--RNSTK----- 345 (852)
T ss_pred eehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHH--hCCCc-----
Confidence 344678888888888898988766654333333223333333333333322211111000 0000 01111
Q ss_pred chhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHh
Q psy6064 258 GVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRL 337 (568)
Q Consensus 258 g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~ 337 (568)
|| ..+..++.+.+|-|+.- |+==+-.+|.+..|-..-+.-+.++.-+..-++...-|.+ ..+|+ ...
T Consensus 346 gw----~~LGgVvLciTGaEALf--ADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~---~~npF----y~s 412 (852)
T PLN00151 346 AW----SALGGCVLCATGSEAMF--ADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDS---AEQIF----FSS 412 (852)
T ss_pred eE----EEecceeeeeccchhhh--cccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCccc---ccCcH----HHh
Confidence 22 13345666888988752 2222334566766666555555555555555555544421 12343 333
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchh-hhccCCCCc----cchHHHHHHHHHHHHHHHHhcH
Q psy6064 338 GWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYER-LSYVSSRTQ----TPLLSTALSGVITAVMSAVFKL 412 (568)
Q Consensus 338 ~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~~v~~r~~----~P~~Ail~~~~i~~~~~~~~~~ 412 (568)
..++..+-+.+.+.++..-+.-+.+.++=-+..+.-+-|.+|+. .-+++++.. .|..--++...+..+...+-+-
T Consensus 413 vP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s 492 (852)
T PLN00151 413 VPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSI 492 (852)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCH
Confidence 44445444444444444434334444444455555566899944 344443322 5665545444444444444567
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6064 413 DQLVDMMSIGTLLAYII 429 (568)
Q Consensus 413 ~~l~~~~~~~~~i~y~~ 429 (568)
+.+.+..+++.....++
T Consensus 493 ~~l~~AYGiAV~~vM~i 509 (852)
T PLN00151 493 TDIGNAYGIAEVGVMMV 509 (852)
T ss_pred HHHHHHhhhhhhhhhhH
Confidence 77777776665444433
No 87
>PLN00150 potassium ion transporter family protein; Provisional
Probab=95.54 E-value=0.18 Score=56.08 Aligned_cols=228 Identities=11% Similarity=0.091 Sum_probs=113.1
Q ss_pred chhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCccccc----CCCCCCCCCCCCcccc
Q psy6064 182 YPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRRE----AIPPGVRGGSGGFAPF 257 (568)
Q Consensus 182 ~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~ 257 (568)
....+++++++.+..+.-+|....+++---..++=++.+..+.+..+...++.-++..++ .++.. ++..
T Consensus 213 ~Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~--~~~~----- 285 (779)
T PLN00150 213 LVTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIR--NGRQ----- 285 (779)
T ss_pred eehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHh--CCCc-----
Confidence 344678888888888898887766554333332223333333333333222211111000 00000 1111
Q ss_pred chhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHh
Q psy6064 258 GVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRL 337 (568)
Q Consensus 258 g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~ 337 (568)
||. .+..++.+.+|-|+.- |+==+=.+|.+..|-..-+.-+.++--+..-++...-|.+ .++|+. ..
T Consensus 286 g~~----~LG~V~L~iTGaEALy--ADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~~---~~npFf----~~ 352 (779)
T PLN00150 286 GWE----SLGGIVLCMTGTEAMF--ADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHMED---VNDPFY----RS 352 (779)
T ss_pred eEE----Eecceeeeecchhhhh--ccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCccc---ccCcHH----Hh
Confidence 121 3345667888988752 2222335566766666555555555555555555543421 123433 33
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchh-hhccCCCCc----cchHHHHHHHHHHHHHHHHhcH
Q psy6064 338 GWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYER-LSYVSSRTQ----TPLLSTALSGVITAVMSAVFKL 412 (568)
Q Consensus 338 ~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~~v~~r~~----~P~~Ail~~~~i~~~~~~~~~~ 412 (568)
..+++.+.+.+.+.++..-+.-+.+.++=-+..+.-+-|.+|+. .-+++++.. .|..--++...+..+...+.+-
T Consensus 353 iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s 432 (779)
T PLN00150 353 LPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDT 432 (779)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecCh
Confidence 44455555555444444444444444444555555677999954 444443332 4655544444444444444467
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6064 413 DQLVDMMSIGTLLAYII 429 (568)
Q Consensus 413 ~~l~~~~~~~~~i~y~~ 429 (568)
+.+.+..+++.....++
T Consensus 433 ~~l~~AYGiAV~~vM~i 449 (779)
T PLN00150 433 DEIGNAYGIAVVGVMII 449 (779)
T ss_pred HHHHHHhhhheehhhHH
Confidence 77777776664444433
No 88
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=95.38 E-value=4.9 Score=43.26 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHH--HHHHHHHHHHHHhc---HHHHHH
Q psy6064 343 KWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTA--LSGVITAVMSAVFK---LDQLVD 417 (568)
Q Consensus 343 ~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail--~~~~i~~~~~~~~~---~~~l~~ 417 (568)
..++....++..+....+..-+++..+-.++.+| ..+| ..+.+..| +.++++..+...+. .+.+..
T Consensus 391 ~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep--~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~i 461 (485)
T PF02028_consen 391 SKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEP--PRWLRIFWGLIIGALAIVLLLIGGLDALQSASI 461 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCC--chHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455555566666666777777888888888776 2222 22333333 34444455555554 566777
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q psy6064 418 MMSIGTLLAYIIVAICVLLLRYS 440 (568)
Q Consensus 418 ~~~~~~~i~y~~~~~~~l~~r~~ 440 (568)
+.++...+...+.+.+.++.-|+
T Consensus 462 i~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 462 IGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888888888888776544
No 89
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.32 E-value=1.8 Score=47.23 Aligned_cols=237 Identities=14% Similarity=0.077 Sum_probs=118.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhccccc--CCCCcccccCCCCCCCCCCCCc
Q psy6064 177 SFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLN--PANWTIRREAIPPGVRGGSGGF 254 (568)
Q Consensus 177 ~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 254 (568)
|....+...+++++++.+..+.-+|....+++- .-+.++=++.+.+.|+.... ++-....++..--.+ +
T Consensus 137 p~l~~~Vvpit~~ILv~LF~iQ~~GT~~vG~~F---gPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f------~ 207 (622)
T PRK10745 137 PQLDTYIVPLSIIVLTLLFMIQKHGTGMVGKLF---APIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHF------F 207 (622)
T ss_pred CCCCCccHHHHHHHHHHHHHHhccccHHHhhhh---hhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHH------H
Confidence 333444456788888888888888877666543 33333333333444443221 111110000000000 0
Q ss_pred cccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHH
Q psy6064 255 APFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIF 334 (568)
Q Consensus 255 ~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~ 334 (568)
..++..+| ..+..++.+.+|-|+-- |+-=+=.+|.+.+|-..-+.-+.++--+..-++...-|.. .++|+...
T Consensus 208 ~~~~~~gf-~~LG~V~L~vTGaEALY--ADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~---~~NpFf~~- 280 (622)
T PRK10745 208 LEYKTVSF-FALGAVVLAITGVEALY--ADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEA---IKNPFFLL- 280 (622)
T ss_pred HhCCCceE-EEecceeeeccchHHHh--hccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCchh---hcCcHHHh-
Confidence 00111111 13445667888988752 2323335666766655555445555444555554433321 23354433
Q ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchh-hhccCCCC-c---cchHHHHHHHHHHHHHHHH
Q psy6064 335 DRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYER-LSYVSSRT-Q---TPLLSTALSGVITAVMSAV 409 (568)
Q Consensus 335 ~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~~v~~r~-~---~P~~Ail~~~~i~~~~~~~ 409 (568)
..+++.+.+.+.+.++..-+.-+.+.++=-+..+.-+-|.+|+. ..+.+++. | .|..--++...+..+...+
T Consensus 281 ---~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F 357 (622)
T PRK10745 281 ---APDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSF 357 (622)
T ss_pred ---CChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEe
Confidence 44555555555555555544445555555566666678999954 44444332 2 4655444444444444444
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHH
Q psy6064 410 FKLDQLVDMMSIGTLLAYIIVAI 432 (568)
Q Consensus 410 ~~~~~l~~~~~~~~~i~y~~~~~ 432 (568)
.+-+.+.+..+++......++.+
T Consensus 358 ~sS~~La~AYGiAVt~tM~iTT~ 380 (622)
T PRK10745 358 EHSSNLAAAYGIAVTGTMVLTSI 380 (622)
T ss_pred cCchHHHHHhhhhheeHhHHHHH
Confidence 46777888777775555544444
No 90
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=94.95 E-value=6.9 Score=42.60 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=31.1
Q ss_pred CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q psy6064 327 DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRI 368 (568)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 368 (568)
+..+.....+..+++..-++..+++.+.+++..+.+.+.|-.
T Consensus 311 d~~~~~l~~~~lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~ 352 (502)
T PRK15419 311 ERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSA 352 (502)
T ss_pred chHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566667788888888888888888888888777644
No 91
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=94.83 E-value=7.9 Score=42.66 Aligned_cols=80 Identities=6% Similarity=0.089 Sum_probs=39.5
Q ss_pred hcCcccchhhHHHHHHHHHHHHHHHHHHHH-h--hhccCC-CcC-------C--CCCHHHHHHHhChhHHHHHHHHHHHH
Q psy6064 286 TRNPKRNIPLAIILSLLIVFVCYFSIAVVI-T--MIVPYY-EQN-------A--DAPFPAIFDRLGWPVMKWLVTVGSLF 352 (568)
Q Consensus 286 ~knP~r~iP~ai~~s~~~~~v~y~l~~~~~-~--~~~p~~-~~~-------~--~~~~~~~~~~~~~~~~~~iv~~~~~~ 352 (568)
.|| .|+..|+..++.....++|+...+.- . ...+++ +.. . +..........++.+..-++..+.+.
T Consensus 287 aks-~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~A 365 (549)
T TIGR02711 287 VSD-AKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAFA 365 (549)
T ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHHH
Confidence 444 36677888887776666665543221 1 112211 110 0 11122233344555555555555666
Q ss_pred HHHHHHHHHhchhH
Q psy6064 353 ALFTAMFGAFFPLP 366 (568)
Q Consensus 353 ~~~~~~~~~~~~~s 366 (568)
+.+++..+.+.+.+
T Consensus 366 A~mST~~s~l~a~s 379 (549)
T TIGR02711 366 TILAVVAGLTLAGA 379 (549)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666656555555
No 92
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=94.10 E-value=10 Score=41.02 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=30.7
Q ss_pred CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHH
Q psy6064 327 DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRI 368 (568)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~ 368 (568)
+..+.....+..+++..-++..+++.+.+++..+.+.+.+-.
T Consensus 304 d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~ 345 (487)
T TIGR02121 304 ETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQLLVSSSA 345 (487)
T ss_pred chhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667788777888888888888888887777654
No 93
>PRK09395 actP acetate permease; Provisional
Probab=93.65 E-value=14 Score=40.84 Aligned_cols=36 Identities=6% Similarity=0.016 Sum_probs=22.7
Q ss_pred cccccChhHHHHHhhcccccchhhhhhhHhHhhhcCh
Q psy6064 83 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGP 119 (568)
Q Consensus 83 l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp 119 (568)
-.|++++|-......+..+++.-|...+...+. .|.
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~ 102 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGY 102 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCH
Confidence 458899987666666666776666665554433 354
No 94
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=92.99 E-value=4.1 Score=43.49 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=22.1
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhc-Ch-hHHHHHHHHHHHH
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQA-GP-SVVISFAIAAVTS 132 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~-Gp-~~~~~~li~~v~~ 132 (568)
+.+|+-++++.+.+=++..+....+..-.. ....+ +. ..+++.+++.++.
T Consensus 4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~-~~~~gL~~~~ailai~~G~~l~ 55 (440)
T PF02133_consen 4 ESERTWSPWSLFWIWFGANISIATFVTGAL-GVALGLSFWQAILAILIGNLLG 55 (440)
T ss_dssp -GG--B-HHHHHHHHCHHH-SCHHH-HHHH-HHCCCS-HHHHHHHHHHHHHHH
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHccCchHHHHHHHHHHHHHHH
Confidence 346788899988885555444443333332 21222 22 2555555555443
No 95
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=91.19 E-value=22 Score=37.29 Aligned_cols=155 Identities=14% Similarity=0.049 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHh
Q psy6064 191 VAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCF 270 (568)
Q Consensus 191 i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~ 270 (568)
.++.......|.|...+++++...+..+..+...+..+...+.. .. .. ..+. ..+..++....
T Consensus 120 ~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~----~~----~~~~------~s~~~~~~~~~ 182 (386)
T TIGR02358 120 GILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLS---EL----WN----RAGD------MSFAVAVELVI 182 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh---hh----cC----CCCC------ccHHHHHHHHH
Confidence 33456666789999999999887777666555444333322211 00 00 0010 11222222211
Q ss_pred hhhh-hhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhChhHHHHHHHHH
Q psy6064 271 FGFV-GFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVG 349 (568)
Q Consensus 271 ~~~~-G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iv~~~ 349 (568)
-... +.-..+..+...|+|++ .-++...+..+...+-.++-.......+.. +| .+.....+.. .+..+.
T Consensus 183 ~~~~swa~~~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~-----d~-~~~~~~~g~~---~~~~~~ 252 (386)
T TIGR02358 183 AMPLSWLPLIADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLATGQT-----DI-ISILAGAGLG---IPALLI 252 (386)
T ss_pred HHHHHHHHHccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CH-HHHHHhccHH---HHHHHH
Confidence 1111 11225666667777655 446666665555555555444444433321 23 3333333321 233344
Q ss_pred HHHHHHHHHHHHhchhHHHHHHH
Q psy6064 350 SLFALFTAMFGAFFPLPRILYAM 372 (568)
Q Consensus 350 ~~~~~~~~~~~~~~~~sR~l~a~ 372 (568)
.+++..++.....++++=-+..+
T Consensus 253 ~~l~~~~~n~~N~ys~~l~l~~l 275 (386)
T TIGR02358 253 ILLSTVTTTFMDIYSAAISTGNL 275 (386)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444444
No 96
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=90.98 E-value=29 Score=38.33 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=20.8
Q ss_pred ccccChhHHHHHhhcccccchhhhhhhHhH
Q psy6064 84 ARVLGLIDLTMLGVGATLGVGVYVLAGSVA 113 (568)
Q Consensus 84 ~r~l~~~~~~~i~i~~~ig~gif~~~g~v~ 113 (568)
.|++++|-...-..+..+++..|.......
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~ 60 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLI 60 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 489999987777777667766666554434
No 97
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=87.81 E-value=21 Score=38.48 Aligned_cols=247 Identities=14% Similarity=0.084 Sum_probs=116.0
Q ss_pred cCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCC--CCcccccCCCCCCCCCCC
Q psy6064 175 KSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPA--NWTIRREAIPPGVRGGSG 252 (568)
Q Consensus 175 ~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 252 (568)
-.+..+.+...+++++++.+..+.-+|....+++ +.-+.++=++.+.+.|+.+.-.+ -.+..++...-++
T Consensus 140 v~p~~~~~Vvpitl~IL~~LF~iQ~~GT~~Vg~~---FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~f----- 211 (627)
T COG3158 140 VTPALDPYVVPITLIILVLLFLIQRFGTGRVGKL---FGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHF----- 211 (627)
T ss_pred cCccccCccHHHHHHHHHHHHHHhcccchhhhhh---hccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHH-----
Confidence 3444555666788888888999999998776665 33344343444444454432111 0000000000000
Q ss_pred CccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHH
Q psy6064 253 GFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPA 332 (568)
Q Consensus 253 ~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~ 332 (568)
....++.+++ .+..++.+.+|-|+--. +==+--+|.+-+|=...+.=+.++.-+..-++...-|.. ..+|+
T Consensus 212 -l~~~~~~gf~-vLGaVfLavTGaEALYA--DmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~~p~a---~~npF-- 282 (627)
T COG3158 212 -LLEEGFVGFF-VLGAVFLAVTGAEALYA--DMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEA---IGNPF-- 282 (627)
T ss_pred -HHhCCceEEE-EeeeeeeeeccHHHHHh--hccccCCccHHHHHHHHHHHHHHHHHccccceeccCccc---ccCcH--
Confidence 0011122221 23455667788887521 212224566655544433323333322222222221211 23343
Q ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchh-hhccCCC-Cc---cchHHHHHHHHHHHHHH
Q psy6064 333 IFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYER-LSYVSSR-TQ---TPLLSTALSGVITAVMS 407 (568)
Q Consensus 333 ~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~~v~~r-~~---~P~~Ail~~~~i~~~~~ 407 (568)
......|+.+-+.+.+..+..-+.-+.+.++=-+..+.-|-|.+|+. ..+.+++ .| .|..-.++...+..++.
T Consensus 283 --F~~~P~~aliP~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl 360 (627)
T COG3158 283 --FLLAPDWALIPLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVL 360 (627)
T ss_pred --HHhChhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheee
Confidence 33334444443333333333333333333444444555677999954 4444433 22 57666665555555544
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHH-HHhhhccc
Q psy6064 408 AVFKLDQLVDMMSIGTLLAYIIVAI-CVLLLRYS 440 (568)
Q Consensus 408 ~~~~~~~l~~~~~~~~~i~y~~~~~-~~l~~r~~ 440 (568)
-+.+-+.+....+++......++.+ ...+.|++
T Consensus 361 ~F~~S~~LAaAYGiAVTgtM~iTt~L~~~~~~~~ 394 (627)
T COG3158 361 GFGSSSNLAAAYGIAVTGTMVITTILLTVVMRKK 394 (627)
T ss_pred EecChHHHHHhhChheeehhHHHHHHHHHHHHHh
Confidence 4556677777777766555555444 33444443
No 98
>PRK09950 putative transporter; Provisional
Probab=86.67 E-value=52 Score=35.71 Aligned_cols=95 Identities=9% Similarity=-0.025 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCc-cchHHHHHHHHHHHHHHHHhc----HHHHH
Q psy6064 342 MKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQ-TPLLSTALSGVITAVMSAVFK----LDQLV 416 (568)
Q Consensus 342 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~-~P~~Ail~~~~i~~~~~~~~~----~~~l~ 416 (568)
...++.+..++.++....++.-+++-.+-.++.+|.=++ .+|+.. .=.+++. .++++..+...+. ++...
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~----~~P~~~~ri~W~i~-~g~ia~~Ll~~gG~l~~lQ~~~ 474 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREG----DDPDRGLRLFWCVV-ITLIPLSILFTGASLDTMKTTV 474 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCC----CCCCcchhHHHHHH-HHHHHHHHHHhCCcHHHHHHHH
Confidence 445555555666666666777777888888777654221 122211 1122332 3333333434433 45566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccC
Q psy6064 417 DMMSIGTLLAYIIVAICVLLLRYSG 441 (568)
Q Consensus 417 ~~~~~~~~i~y~~~~~~~l~~r~~~ 441 (568)
-+.++...+...+.+.+.++.-+++
T Consensus 475 ii~alP~~~i~~l~~~s~~k~l~~d 499 (506)
T PRK09950 475 VLTALPFLVILLIKVYGFIRWLKQD 499 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6777888888888888877655444
No 99
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=84.55 E-value=64 Score=34.89 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcC-ccchhhhccCCCCccchHHHHHHHHHHHHHHHHhc---HHHHHH
Q psy6064 342 MKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDG-LLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFK---LDQLVD 417 (568)
Q Consensus 342 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg-~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~---~~~l~~ 417 (568)
...+..+..++....-..++..+.+-++-.++..| .=|+.+-|+ .=-++.++++..+.+.+. ++...-
T Consensus 403 l~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~--------~W~v~~~~ia~~lL~~ggl~aLqt~~i 474 (537)
T COG1292 403 LGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRV--------FWGVLIGLIAAVLLLIGGLEALQTAAI 474 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHH--------HHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44445555555555555677788888888888766 223333222 222445555555555554 455566
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCC
Q psy6064 418 MMSIGTLLAYIIVAICVLLLRYSGD 442 (568)
Q Consensus 418 ~~~~~~~i~y~~~~~~~l~~r~~~~ 442 (568)
+.++.+.+..++.+.++++--++++
T Consensus 475 i~alPF~~vll~~~~sl~k~l~~d~ 499 (537)
T COG1292 475 ITALPFSLVLLVMMFSLIKDLKQDY 499 (537)
T ss_pred HHHccHHHHHHHHHHHHHHHHHhhH
Confidence 6777888888888888887766554
No 100
>KOG2466|consensus
Probab=80.54 E-value=85 Score=33.50 Aligned_cols=289 Identities=12% Similarity=0.050 Sum_probs=127.9
Q ss_pred CCccccccccChhHHHHHhhcccccchhhhhhhHhHhhhc-Chh-H----HHHHHHHHHHHHHhhhc---c----c----
Q psy6064 78 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQA-GPS-V----VISFAIAAVTSLFSVVK---N----P---- 140 (568)
Q Consensus 78 ~~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~-Gp~-~----~~~~li~~v~~~~~a~~---~----P---- 140 (568)
...++-+|+.|+|+-+.+=.+..++.+-+...+. +.+.| .+. . +.+.++.+++..+.+.. | |
T Consensus 47 ~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s-~l~lGLswwq~~~tv~vG~~~~~~f~~lns~~G~~yhIsFpv~sR 125 (572)
T KOG2466|consen 47 KPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGS-ALELGLSWWQTWITVWVGYLFTAIFLVLNSRPGSDYHISFPVLSR 125 (572)
T ss_pred CcCCcccccccHHHHHHHHHhccccccceeehhh-HHhccCCHHHHHHHHHHHHHHHHHHHHHccCCCcccccceeeeee
Confidence 3444567899999999987777666666666655 32333 222 3 34444444443333221 1 3
Q ss_pred -chh-h--------HHHHHHHHHHHHHHhhhhHHHHHHHHhcccc---CCCCC----cchhHHHHHHHHHH-HHHHHhcc
Q psy6064 141 -NLR-V--------LNSDVKAISNQIDSLMGNAYQKSMESLLPIK---SSFLS----SYPDFIAPIFVAVI-TGLLSWGA 202 (568)
Q Consensus 141 -~~~-Y--------~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~ia~~~i~~~-~~ln~~g~ 202 (568)
.++ | ..-....|...-+|+-+.++...+-+.+.-. .+..+ ..-.++...+.+++ ....+++.
T Consensus 126 ~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~p 205 (572)
T KOG2466|consen 126 SSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFPP 205 (572)
T ss_pred eehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeeccH
Confidence 333 3 2222333444444554545544444443111 11111 11224444444443 33445666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhh
Q psy6064 203 SESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATT 282 (568)
Q Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~ 282 (568)
....++..+-.++.....+.+.+..+...+. .. .+..+. ...+ -..+.|. ++ .....++.+|...+.-
T Consensus 206 ~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG--~G----~l~~~~-st~~-gs~~aWa-~~---~~i~~~~~~fstl~~N 273 (572)
T KOG2466|consen 206 YKIRHLFTWKAVLTPFAAFGFLIWLLKKAHG--LG----HLFDSK-STVS-GSAHAWA-FV---RSIMSCIANFSTLIVN 273 (572)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHHHHHhcCC--cc----ccccCC-Cccc-ccchhHH-HH---HHHHHHHhccchhhcc
Confidence 6666666665555555555555555543332 10 111100 0000 0122333 33 3444555566554444
Q ss_pred hhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhhccC--CCcC--CCCCHHHHHHH-------hChhHHHHHHHHHHH
Q psy6064 283 GEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPY--YEQN--ADAPFPAIFDR-------LGWPVMKWLVTVGSL 351 (568)
Q Consensus 283 a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~--~~~~--~~~~~~~~~~~-------~~~~~~~~iv~~~~~ 351 (568)
+.|..+=.|+ |.+...+-+++.-+...+.-.+...+.. +.+- .-..-.+++++ .|.+.+..++..+.+
T Consensus 274 ~pDFsRF~ks-p~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~ 352 (572)
T KOG2466|consen 274 APDFSRFAKS-PNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFA 352 (572)
T ss_pred CchhHhhcCC-CCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHH
Confidence 4443322222 3333333332222221111111111111 1111 11122333333 266678888888888
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhcCccchhhhc
Q psy6064 352 FALFTAMFGAFFPLPRILYAMSRDGLLYERLSY 384 (568)
Q Consensus 352 ~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~ 384 (568)
++.+++..+.-..++ ++.--+++|+++.-
T Consensus 353 laql~~NISan~vaa----gnDl~~L~PkyinI 381 (572)
T KOG2466|consen 353 LAQLGTNISANSVAA----GNDLSALLPKYINI 381 (572)
T ss_pred HHHHhcchhcccccc----chhhHhhCcceEEe
Confidence 888877655432222 23334677887643
No 101
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=79.34 E-value=93 Score=33.20 Aligned_cols=213 Identities=11% Similarity=0.108 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCC--CCcccccCCCCCC---CCCCCCccccchh
Q psy6064 186 IAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPA--NWTIRREAIPPGV---RGGSGGFAPFGVN 260 (568)
Q Consensus 186 ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~p~g~~ 260 (568)
+.++.++.....-+-|++...+.|.+=.++.+...++..+....+.+.+ ++-.......... ..-..+.....+.
T Consensus 158 v~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i 237 (529)
T COG4147 158 VVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPI 237 (529)
T ss_pred hhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHH
Confidence 3444444455556678888888777666655555444444443332221 1100000000000 0000112222233
Q ss_pred HHHHhHHHHhhhhhhhhHHhhhh------hhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhh----c--cCC------
Q psy6064 261 GIVTGAAKCFFGFVGFDGIATTG------EETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMI----V--PYY------ 322 (568)
Q Consensus 261 ~~~~~~~~~~~~~~G~e~~~~~a------~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~----~--p~~------ 322 (568)
.++ ...+--..|.-..+|.- .++|+ -.++..+++....++|+..-+.-... . |..
T Consensus 238 ~~i---sl~~aLm~GTAgLPHil~RFfTvp~~k~----AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~ 310 (529)
T COG4147 238 DFI---SLGFALMVGTAGLPHILMRFFTVPDAKE----ARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAA 310 (529)
T ss_pred HHH---HHHHHHHHccCCCCeEEEEEEecCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Confidence 333 33333334655555543 33444 45667888888899998765432221 1 111
Q ss_pred ------CcCC-------CCCHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHhch----hHHHHHHHHhcCccchhhhc
Q psy6064 323 ------EQNA-------DAPFPAIFDRLG-WPVMKWLVTVGSLFALFTAMFGAFFP----LPRILYAMSRDGLLYERLSY 384 (568)
Q Consensus 323 ------~~~~-------~~~~~~~~~~~~-~~~~~~iv~~~~~~~~~~~~~~~~~~----~sR~l~a~ardg~lP~~f~~ 384 (568)
|... +.....+....+ +++..-++..+.+.+.+++.-+.+.+ .||=+|.+--|+. .++
T Consensus 311 ~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~----ase 386 (529)
T COG4147 311 KWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKG----ATE 386 (529)
T ss_pred cccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCC----CCc
Confidence 1111 112233345556 57777777777766666665444443 3444444433322 222
Q ss_pred cCCCCccchHHHHHHHHHHHHHHHHh
Q psy6064 385 VSSRTQTPLLSTALSGVITAVMSAVF 410 (568)
Q Consensus 385 v~~r~~~P~~Ail~~~~i~~~~~~~~ 410 (568)
-. +-..-..++.+.++++..+....
T Consensus 387 ~~-~v~vaRi~~v~~~vva~~lgi~~ 411 (529)
T COG4147 387 KK-EVRVARIAVVILGVVAILLGILP 411 (529)
T ss_pred cc-eehhHHHHHHHHHHHHHHheecC
Confidence 11 33344455566666666555443
No 102
>KOG4303|consensus
Probab=74.87 E-value=34 Score=34.67 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHH
Q psy6064 185 FIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVT 264 (568)
Q Consensus 185 ~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~ 264 (568)
.++-++++-+.++ ...|..+++..+.++.++++-++++..++...+.=.|..... ......+=.
T Consensus 243 ~i~~a~LLpc~FL--k~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~F--------------sidi~~fPi 306 (524)
T KOG4303|consen 243 MITSASLLPCSFL--KDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTF--------------SIDINTFPI 306 (524)
T ss_pred hhhhHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEE--------------EEEcccCce
Confidence 4444555555444 345777888888888887777776666665443212211100 000111223
Q ss_pred hHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy6064 265 GAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVV 314 (568)
Q Consensus 265 ~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~ 314 (568)
.+..+.|+|+.---..++-+.+|||.+ +---+-++-+...++=.++...
T Consensus 307 svG~iVFsYTSqIFLP~LEGNM~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~ 355 (524)
T KOG4303|consen 307 SVGMIVFSYTSQIFLPNLEGNMKNPSQ-FNVMLKWSHIAAAVFKVVFGML 355 (524)
T ss_pred EEEEEEEeeeceeeccccccccCChhH-heeeeehHHHHHHHHHHHHHHh
Confidence 344567888887778889999999976 4445556766666665554433
No 103
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=74.24 E-value=1.4e+02 Score=32.65 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=53.0
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCC-CcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhh-h
Q psy6064 198 LSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPAN-WTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFV-G 275 (568)
Q Consensus 198 n~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~-G 275 (568)
...|+|..+|+......+-.+.++++.+-++...+... .+ +.+. .+-+... ...-+..++..++|+.. |
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~----~~~~---pd~~~l~--~~~vW~~A~~Q~ffsl~ig 265 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLK----FLFT---PDWSKLL--DPKVWIAALGQVFFSLSIG 265 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHH----HHHS---B-TTGTT--SHHHHHHHHHHHHHHTTTT
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceE----EEec---CCcchhh--HHHHHHHHHHHHhhccCCC
Confidence 45788888887766555444444444444443221100 00 0000 0000111 12336678888888774 7
Q ss_pred hhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHH
Q psy6064 276 FDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIA 312 (568)
Q Consensus 276 ~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~ 312 (568)
+-....++.-.|+ ++|++|..........++.++..
T Consensus 266 ~G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 266 FGIMITYGSYNKF-KNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp SSHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTG
T ss_pred cceEEEEcCcCCC-CccccccceEEEcCchhhhHhHH
Confidence 7777777777665 57788876666666655554443
No 104
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=73.12 E-value=1.4e+02 Score=32.33 Aligned_cols=94 Identities=13% Similarity=0.015 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCC-ccchHHHHHHHHHHHHHHHHhc---HHHHHH
Q psy6064 342 MKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRT-QTPLLSTALSGVITAVMSAVFK---LDQLVD 417 (568)
Q Consensus 342 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~-~~P~~Ail~~~~i~~~~~~~~~---~~~l~~ 417 (568)
+..++.+..++.++....++.-+++-.+-.++.+|.=++ .||+. ..=.+++ +.++++..+...+. ++....
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~----~~p~~~~ri~W~v-~ig~ia~~Ll~~GGl~~lQt~si 477 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDG----EEPPLLVRIGWSI-LVGIIGIVLLALGGLKPIQTAII 477 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCC----CCCCcchhhHHHH-HHHHHHHHHHHhcCHHHHHHHHH
Confidence 344555555555565666777777888888887663221 12221 1122232 23344444444443 556677
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc
Q psy6064 418 MMSIGTLLAYIIVAICVLLLRYS 440 (568)
Q Consensus 418 ~~~~~~~i~y~~~~~~~l~~r~~ 440 (568)
+.++...+...+.+.++++.-++
T Consensus 478 i~alPf~~i~~l~~~sl~k~l~~ 500 (504)
T PRK03356 478 AGGCPLFFVNIMVTLSFIKDAKQ 500 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888888888887765543
No 105
>PTZ00206 amino acid transporter; Provisional
Probab=72.68 E-value=65 Score=34.67 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=45.2
Q ss_pred CCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhh
Q psy6064 328 APFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLS 383 (568)
Q Consensus 328 ~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~ 383 (568)
..+.++.+...|+++.+++.+..++..++...+.+...+..+...-++...|+++.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 46788888888899999999999999999999999999988877665544455554
No 106
>KOG3659|consensus
Probab=68.20 E-value=1.9e+02 Score=31.77 Aligned_cols=122 Identities=18% Similarity=0.108 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHH
Q psy6064 185 FIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVT 264 (568)
Q Consensus 185 ~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~ 264 (568)
+..+++.+++.+..+.|.|.++|+.-+.+.+-.+++.++.+-++...+..+... ... .++-..+ .....+..
T Consensus 256 lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~---y~~---~~~~~kl--~~~~vW~d 327 (629)
T KOG3659|consen 256 LCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQ---YYL---TPDIEKL--KEPSVWID 327 (629)
T ss_pred HHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchh---hee---cccHHHH--hhHHHHHH
Confidence 344555566677788999999998655555554444444455553222211110 000 0000000 11233555
Q ss_pred hHHHHhhhh-hhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHH
Q psy6064 265 GAAKCFFGF-VGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVI 315 (568)
Q Consensus 265 ~~~~~~~~~-~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~ 315 (568)
+...++++. .|+.....++.-.|- +.|.=|=.+..-++..+.+++...+.
T Consensus 328 AAtqiffslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfvi 378 (629)
T KOG3659|consen 328 AATQIFFSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFVI 378 (629)
T ss_pred HHHHHHhhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 666666654 477777766665553 44444444444444444544444433
No 107
>PRK09928 choline transport protein BetT; Provisional
Probab=67.90 E-value=2.1e+02 Score=32.19 Aligned_cols=96 Identities=9% Similarity=-0.104 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHhc---HHHHHHH
Q psy6064 342 MKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFK---LDQLVDM 418 (568)
Q Consensus 342 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~---~~~l~~~ 418 (568)
+..++.+..++.++....++.-+++-++-.++..|.-|+ .-.|+...=.++++ .+++++.+...+. ++...-+
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~---~~pp~~~RifW~v~-ig~la~~LL~~GGL~aLQt~sii 482 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDIN---SDAPNWLRVFWSVA-IGLLTLGMLMTNGISALQNTTVI 482 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCC---CCCCcceeeHHHHH-HHHHHHHHHHhcCHHHHHHHHHH
Confidence 344444444555555556666777777777777664221 00111111223333 3344444444443 5566777
Q ss_pred HHHHHHHHHHHHHHHHhhhcccC
Q psy6064 419 MSIGTLLAYIIVAICVLLLRYSG 441 (568)
Q Consensus 419 ~~~~~~i~y~~~~~~~l~~r~~~ 441 (568)
.++.+.+..++.+.++++.-+++
T Consensus 483 ~alPf~~I~ll~~~sl~k~l~~e 505 (679)
T PRK09928 483 MGLPFSFVIFFVMAGLYKSLKVE 505 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888888887755443
No 108
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=59.15 E-value=2.3e+02 Score=29.65 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=31.4
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q psy6064 330 FPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAM 372 (568)
Q Consensus 330 ~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ 372 (568)
..+.++...|+++..++.++.+.+..++..+..++..=+...+
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888899999999999988888887665444443
No 109
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=59.14 E-value=2.5e+02 Score=30.04 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCC-CCccchHHHHHHHHHHHHHHHHhc----HHHHH
Q psy6064 342 MKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSS-RTQTPLLSTALSGVITAVMSAVFK----LDQLV 416 (568)
Q Consensus 342 ~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~-r~~~P~~Ail~~~~i~~~~~~~~~----~~~l~ 416 (568)
...++....++.++....+..-+++-.+-.++.++.-++ -+| +...=.+++.+ ++++..+.+.+. ++.+.
T Consensus 354 ~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~----~ep~~~~ri~W~v~i-g~~a~~ll~~gG~l~~lQ~~~ 428 (453)
T TIGR00842 354 LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQLG----EEPPKWVRVFWAVAI-GLIALVLLFSGGSLAALQTTA 428 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCC----CCCCcccchHHHHHH-HHHHHHHHHhcCcHHHHHHHH
Confidence 344555555555555666667777777777755332110 011 11122334333 344444444433 45566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q psy6064 417 DMMSIGTLLAYIIVAICVLLLR 438 (568)
Q Consensus 417 ~~~~~~~~i~y~~~~~~~l~~r 438 (568)
.+.++...+..++.+.++++.-
T Consensus 429 ii~alP~~~i~~l~~~sl~k~l 450 (453)
T TIGR00842 429 IIAALPFSLVMLVVMASLIKDL 450 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888777544
No 110
>KOG3660|consensus
Probab=57.49 E-value=3.2e+02 Score=30.67 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=38.4
Q ss_pred ChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHH----HHHHHHHHhhhcc
Q psy6064 88 GLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFA----IAAVTSLFSVVKN 139 (568)
Q Consensus 88 ~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~l----i~~v~~~~~a~~~ 139 (568)
+..+.++-.+|..+|.|-+...+...+++||.+.++.|+ +.|+-.+...+++
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~sl 94 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSL 94 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHH
Confidence 667888889999999999998888888899876555444 4444555555555
No 111
>PF14256 YwiC: YwiC-like protein
Probab=53.43 E-value=1.5e+02 Score=25.70 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy6064 397 ALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSG 441 (568)
Q Consensus 397 l~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 441 (568)
+.+.++-.++.+....+..--...++.+..|....-....+|.|+
T Consensus 8 W~Ml~~P~l~G~~~~~~w~~~~L~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 8 WAMLLVPFLLGMAGGPSWAHLPLLLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444455555555444444444445666667776666666666555
No 112
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=53.01 E-value=49 Score=27.25 Aligned_cols=50 Identities=20% Similarity=0.100 Sum_probs=26.9
Q ss_pred cccccccChhHHHHHhhcccccchhhhhhhHhHhh-h-cChhHHHHHHHHHHHH
Q psy6064 81 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARN-Q-AGPSVVISFAIAAVTS 132 (568)
Q Consensus 81 ~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~-~-~Gp~~~~~~li~~v~~ 132 (568)
.+.-|.|+..+.+++.+...+-.|+|.. ...-. . ++|...+.+++.|++.
T Consensus 36 ~~~~~~l~~~g~IG~~~v~pil~G~~lG--~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 36 RSIWEGLGMFGLIGWSVAIPTLLGVAVG--IWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCCcHHHHHHHHHHHHH
Confidence 3455778888877776665544444432 22222 2 2455455555555543
No 113
>KOG1286|consensus
Probab=51.25 E-value=31 Score=37.91 Aligned_cols=48 Identities=56% Similarity=1.137 Sum_probs=40.7
Q ss_pred ccchhHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHhhh-ccccccc
Q psy6064 517 WVPLIPCLSMFMNIYLMINLDVSTWV--RFLVWLVLGMVVYFT-YSIDHSK 564 (568)
Q Consensus 517 ~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~g~~~y~~-~~~~~~~ 564 (568)
+.|+.|.+.+..+.+++..++..+|. +...|...|+..|.. |+.+|.+
T Consensus 503 ~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 503 LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 44567788889999999988888999 999999999999977 8888764
No 114
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=48.00 E-value=1.3e+02 Score=23.35 Aligned_cols=42 Identities=12% Similarity=-0.029 Sum_probs=34.9
Q ss_pred hHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy6064 277 DGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMI 318 (568)
Q Consensus 277 e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~ 318 (568)
|.-..+-+|++.|-|.+.+....+...+..+..++...-...
T Consensus 4 ~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a 45 (75)
T PF11998_consen 4 EQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLIA 45 (75)
T ss_pred HHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344567799999999999999999999999988887766554
No 115
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=36.55 E-value=2.7e+02 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.499 Sum_probs=16.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHh
Q psy6064 388 RTQTPLLSTALSGVITAVMSAVF 410 (568)
Q Consensus 388 r~~~P~~Ail~~~~i~~~~~~~~ 410 (568)
|.+.+....++..++.+.+....
T Consensus 27 k~~~~~~~~~~~~~v~i~~~~~l 49 (146)
T PF14667_consen 27 KTKWPFIITLIGAIVNIILNYIL 49 (146)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888877766555
No 116
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=34.37 E-value=23 Score=35.47 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhcccccccccc
Q psy6064 546 VWLVLGMVVYFTYSIDHSKQKA 567 (568)
Q Consensus 546 ~~~~~g~~~y~~~~~~~~~~~~ 567 (568)
+.+++.+++|++.++||+|+.+
T Consensus 267 iIVLIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3355667788888777755443
No 117
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=32.25 E-value=6e+02 Score=26.49 Aligned_cols=101 Identities=11% Similarity=0.171 Sum_probs=59.7
Q ss_pred HHHhhhhhhhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHH--HHhhhccCCCcCCCCCHHHHHHHhChhHHHH
Q psy6064 267 AKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAV--VITMIVPYYEQNADAPFPAIFDRLGWPVMKW 344 (568)
Q Consensus 267 ~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 344 (568)
....+...|--..+.-.-..|| +|.+.++|+.+..++.++-+..-. ++.-.+-+|--..|.-+....-+...|...-
T Consensus 242 ilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~ag 320 (473)
T COG4145 242 ILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAG 320 (473)
T ss_pred HHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHH
Confidence 3444444555444444445666 577888888887777766554332 2222222222234555666666677777766
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHH
Q psy6064 345 LVTVGSLFALFTAMFGAFFPLPRI 368 (568)
Q Consensus 345 iv~~~~~~~~~~~~~~~~~~~sR~ 368 (568)
+.......+.+++.++.+.-+|-.
T Consensus 321 ifl~apmaAiMSTIds~L~~~sst 344 (473)
T COG4145 321 IFLAAPMAAIMSTINSQLLQSSST 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777788888776555543
No 118
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=31.22 E-value=57 Score=30.52 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=26.6
Q ss_pred hhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHHH
Q psy6064 283 GEETRNPK-RNIPLAIILSLLIVFVCYFSIAVVI 315 (568)
Q Consensus 283 a~E~knP~-r~iP~ai~~s~~~~~v~y~l~~~~~ 315 (568)
-|-.+||| |.+||+++.+.+.+.++.+...+..
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~~ 237 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLMI 237 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 46778998 8999999999998888877665543
No 119
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=30.20 E-value=5.7e+02 Score=25.59 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCcc
Q psy6064 299 LSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL 378 (568)
Q Consensus 299 ~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~l 378 (568)
.+.++.++..++....+...... ..+..+.+..++..|++...++....++-.+..... ..|..-.+-++-.+
T Consensus 36 i~~ll~~~~~l~~~~l~~~l~~~---~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~----~lr~~~~~i~~~~l 108 (320)
T PF03845_consen 36 ISVLLGGLIGLLLALLIYYLLKR---FPGKTLVEISEKLFGKWLGKIINLLYILYFLLISAL----VLREFSEFIKTYLL 108 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 44444444444444444433321 124568888888888888887766555444433222 23444443333332
Q ss_pred chhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Q psy6064 379 YERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGT 423 (568)
Q Consensus 379 P~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~ 423 (568)
.+||...+.+...+.........++.+.....+..
T Consensus 109 ----------p~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~ 143 (320)
T PF03845_consen 109 ----------PETPIWVIILLFLLVAAYAARKGIEVIARVAEILF 143 (320)
T ss_pred ----------CcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 37899999998888888888888888876544443
No 120
>COG4325 Predicted membrane protein [Function unknown]
Probab=29.46 E-value=5.4e+02 Score=26.78 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=30.2
Q ss_pred HhchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHHHHHHHh
Q psy6064 361 AFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF 410 (568)
Q Consensus 361 ~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~ 410 (568)
..++..=+..++|-.+.-|+.+.-.= .++|...++-++++++++.+..
T Consensus 96 ~~fSItvvalqlaSsqfsPRll~~fm--rd~~nqvvLa~FlctFvysl~v 143 (464)
T COG4325 96 IVFSITVVALQLASSQFSPRLLRTFL--RDVPNQVVLAIFLCTFVYSLGV 143 (464)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHh--hcCchHHHHHHHHHHHHHHHHH
Confidence 33344445556667777776666554 2677777777777777766554
No 121
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=26.31 E-value=71 Score=28.09 Aligned_cols=48 Identities=25% Similarity=0.265 Sum_probs=25.0
Q ss_pred ccchhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHh--hhccccccc
Q psy6064 517 WVPLIPCLSMFMNIYLMINLD-VSTWVRFLVWLVLGMVVY--FTYSIDHSK 564 (568)
Q Consensus 517 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~g~~~y--~~~~~~~~~ 564 (568)
+..+.|.+++++..++.-.+. ...+..+.+.+..++.+| .-|.||+.+
T Consensus 80 LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~ 130 (150)
T COG3086 80 LVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSRKLAK 130 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 355788898888888844432 233444444333333333 334444333
No 122
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=25.83 E-value=23 Score=34.61 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred ccCCCCccchHHHHHHHHH
Q psy6064 384 YVSSRTQTPLLSTALSGVI 402 (568)
Q Consensus 384 ~v~~r~~~P~~Ail~~~~i 402 (568)
+.+||--.|...+.+...+
T Consensus 13 ~r~pr~p~~~a~l~~~~ll 31 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLLL 31 (381)
T ss_dssp -------------------
T ss_pred CCCCCCCCcchhHHHHHHH
Confidence 3455655666666554443
No 123
>PTZ00046 rifin; Provisional
Probab=24.75 E-value=48 Score=33.87 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhcccccccccc
Q psy6064 546 VWLVLGMVVYFTYSIDHSKQKA 567 (568)
Q Consensus 546 ~~~~~g~~~y~~~~~~~~~~~~ 567 (568)
+.+++.+++|++.|+||+|+.+
T Consensus 326 VIVLIMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 326 VIVLIMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHHHHHhhhcchhH
Confidence 3355678889888888877554
No 124
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.98 E-value=49 Score=33.76 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhcccccccccc
Q psy6064 546 VWLVLGMVVYFTYSIDHSKQKA 567 (568)
Q Consensus 546 ~~~~~g~~~y~~~~~~~~~~~~ 567 (568)
+.+++.+++|++.|+||+|+.+
T Consensus 321 vIVLIMvIIYLILRYRRKKKMk 342 (353)
T TIGR01477 321 IIVLIMVIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHHHHHhhhcchhH
Confidence 3355667889888888877554
No 125
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=23.96 E-value=8.9e+02 Score=25.74 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=23.3
Q ss_pred CCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy6064 388 RTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICV 434 (568)
Q Consensus 388 r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~ 434 (568)
|.+.|....++..++.+.+..+.....=..-..++..+++.+..+..
T Consensus 375 ~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~ 421 (502)
T TIGR01695 375 DTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLL 421 (502)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 56778777777666655543332111111223344555555554433
No 126
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=23.40 E-value=96 Score=28.00 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=25.0
Q ss_pred hhhhcCcc-cchhhHHHHHHHHHHHHHHHHHHH
Q psy6064 283 GEETRNPK-RNIPLAIILSLLIVFVCYFSIAVV 314 (568)
Q Consensus 283 a~E~knP~-r~iP~ai~~s~~~~~v~y~l~~~~ 314 (568)
-|..+||+ |.+||+++.+.+...+..++..+.
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 36678998 889999999988887776665543
No 127
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=21.95 E-value=68 Score=21.54 Aligned_cols=14 Identities=36% Similarity=0.769 Sum_probs=7.2
Q ss_pred HHHHHHHhhhcccc
Q psy6064 548 LVLGMVVYFTYSID 561 (568)
Q Consensus 548 ~~~g~~~y~~~~~~ 561 (568)
+++++++|+.|+|+
T Consensus 26 ~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 26 IVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHhheEEecc
Confidence 44555555555443
No 128
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=20.54 E-value=2.3e+02 Score=20.60 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=19.7
Q ss_pred HhHHHHhhhhhhhhHHhhhhhhhcCc
Q psy6064 264 TGAAKCFFGFVGFDGIATTGEETRNP 289 (568)
Q Consensus 264 ~~~~~~~~~~~G~e~~~~~a~E~knP 289 (568)
..+-...|++.|.-+-.+.-+|.++.
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~ 28 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQG 28 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcC
Confidence 34557788999999888888877643
No 129
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=20.22 E-value=1e+02 Score=26.79 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=11.3
Q ss_pred chhHHHHHHHHHHHHhcC
Q psy6064 519 PLIPCLSMFMNIYLMINL 536 (568)
Q Consensus 519 ~~~~~~~~~~~~~l~~~~ 536 (568)
..+|.+.++....+...+
T Consensus 75 Y~lPll~li~g~~l~~~~ 92 (135)
T PF04246_consen 75 YLLPLLALIAGAVLGSYL 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357777777766664443
Done!