Query psy6064
Match_columns 568
No_of_seqs 252 out of 2710
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 16:44:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 3.3E-45 1.1E-49 390.0 40.2 403 81-566 4-435 (445)
2 3gia_A Uncharacterized protein 100.0 2.1E-42 7.2E-47 368.2 34.7 342 82-442 3-370 (444)
3 4djk_A Probable glutamate/gamm 100.0 1.7E-39 5.9E-44 352.0 37.9 347 79-442 5-397 (511)
4 2jln_A MHP1; hydantoin, transp 98.7 2.1E-05 7.2E-10 83.9 33.4 265 82-372 22-329 (501)
5 3dh4_A Sodium/glucose cotransp 97.2 0.049 1.7E-06 58.2 23.7 42 327-369 307-348 (530)
6 2a65_A Leutaa, Na(+):neurotran 97.0 0.31 1E-05 51.5 26.1 116 188-310 173-292 (519)
7 2xq2_A Sodium/glucose cotransp 96.4 0.26 9E-06 53.3 21.6 97 271-369 261-377 (593)
8 4ain_A Glycine betaine transpo 74.9 33 0.0011 35.9 13.1 89 344-441 411-507 (539)
9 2wsw_A BCCT family betaine/car 56.0 1.9E+02 0.0066 29.9 18.2 90 345-440 411-505 (509)
10 2klu_A T-cell surface glycopro 9.2 2.4E+02 0.008 20.2 2.7 27 542-568 16-42 (70)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=3.3e-45 Score=389.99 Aligned_cols=403 Identities=18% Similarity=0.214 Sum_probs=329.5
Q ss_pred cccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h-----
Q psy6064 81 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V----- 144 (568)
Q Consensus 81 ~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y----- 144 (568)
+++||+++++++++++++.++|+|+|..++.+. .+||..+++|+++++++++.+++| |+-+ |
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 356799999999999999999999999988743 468888999999999999999998 5332 2
Q ss_pred --HHHHHHHHHHHHHHhhhhHHHHHHHHh-ccccCCCC--CcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q psy6064 145 --LNSDVKAISNQIDSLMGNAYQKSMESL-LPIKSSFL--SSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT 219 (568)
Q Consensus 145 --~~~~~~~w~~~l~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~~~ 219 (568)
..++..+|.+++.+....+........ .....+.. +.+..+++++++++++.+|++|+|..++++.+++.++++.
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~ 161 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIP 161 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 789999999999877655433222211 11111111 1234567888889999999999999999999999999999
Q ss_pred HHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHHHH
Q psy6064 220 VAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299 (568)
Q Consensus 220 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai~~ 299 (568)
++++++.++...+.+++.... +..+ ..++.+++.++...+|+|.|+|.+++++||+|||+|++|||+..
T Consensus 162 ~~~~~i~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~ 230 (445)
T 3l1l_A 162 IVGIAVFGWFWFRGETYMAAW--------NVSG---LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIG 230 (445)
T ss_dssp HHHHHHTTSTTCCCCCCCCC----------------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhccccc--------CccC---CccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHH
Confidence 988888887765443322110 0001 11255688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCcC-CCCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCcc
Q psy6064 300 SLLIVFVCYFSIAVVITMIVPYYEQN-ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL 378 (568)
Q Consensus 300 s~~~~~v~y~l~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~l 378 (568)
+..++.++|++.+++.....|+++.. .++|+.++++..+++++..++.+.++++.+++.++.+++.+|++++|||||.+
T Consensus 231 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~l 310 (445)
T 3l1l_A 231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLF 310 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999988764 46799999999888889999999999999999999999999999999999999
Q ss_pred chhhhccCCCCccchHHHHHHHHHHHHHHHH-------hcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccCC
Q psy6064 379 YERLSYVSSRTQTPLLSTALSGVITAVMSAV-------FKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVVVETCDS 451 (568)
Q Consensus 379 P~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~-------~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~ 451 (568)
|++|+|+| |+++|+++++++++++.++.+. ..++.+.++.++..++.|.+++++.+++|+|+|
T Consensus 311 P~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~--------- 380 (445)
T 3l1l_A 311 PPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF--------- 380 (445)
T ss_dssp CGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS---------
T ss_pred cHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---------
Confidence 99999999 5799999999999988776654 248999999999999999999999999988763
Q ss_pred cccccchhcccccCCCCCcccccccchhhhhHHHHhhhhcccccccceEEEEecCCCCCCCccccccchhHHHHHHHHHH
Q psy6064 452 EVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIY 531 (568)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 531 (568)
+ .|.|..++++.++.+.+++
T Consensus 381 -----------------------------------------------------------~-~r~~~~~~~~~~~~~~~~~ 400 (445)
T 3l1l_A 381 -----------------------------------------------------------G-KARPAYLAVTTIAFLYCIW 400 (445)
T ss_dssp -----------------------------------------------------------G-GGCTTTHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------c-cccchhHHHHHHHHHHHHH
Confidence 1 1346778999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy6064 532 LMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQK 566 (568)
Q Consensus 532 l~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 566 (568)
++...++..+....+|+++|+++|+.+++|+++++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (445)
T 3l1l_A 401 AVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP 435 (445)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 99999999999999999999999998877766533
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=2.1e-42 Score=368.21 Aligned_cols=342 Identities=19% Similarity=0.312 Sum_probs=287.3
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHHHHhhhcc-------cchh----h------
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKN-------PNLR----V------ 144 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~~~~a~~~-------P~~~----Y------ 144 (568)
+.||+++++++++++++.++|+|+|..++... ..+||+.+++|+++++++++.+++| |+-+ |
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 45799999999999999999999999998854 6788999999999999999999998 5322 2
Q ss_pred --HHHHHHHHHHHHHHhhhhHHH-----HHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Q psy6064 145 --LNSDVKAISNQIDSLMGNAYQ-----KSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANL 217 (568)
Q Consensus 145 --~~~~~~~w~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~~~~~ 217 (568)
..+...+|.+++++....+.. +++...++. ...+.+..+++++++++++.+|++|+|..++++.++..+++
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i 159 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA--PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKL 159 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 223334688887776644333 233322211 11112234678888999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhcCcccchhhHH
Q psy6064 218 GTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAI 297 (568)
Q Consensus 218 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~knP~r~iP~ai 297 (568)
+.++++++.++...+.+++.+ .+.|.++.+++.++...+|+|.|+|.+++++||+|||+|++||++
T Consensus 160 ~~~~~~ii~~~~~~~~~~~~~--------------~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai 225 (444)
T 3gia_A 160 LILGLFIFAGLITIHPSYVIP--------------DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAI 225 (444)
T ss_dssp HHHHHHHHHHHHHCCGGGTSC--------------CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhcCC--------------CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHH
Confidence 999988888887655444321 134567778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcCC--CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHhc
Q psy6064 298 ILSLLIVFVCYFSIAVVITMIVPYYEQNA--DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRD 375 (568)
Q Consensus 298 ~~s~~~~~v~y~l~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ard 375 (568)
..++.++.++|++..++.....|+++..+ +.|+.++++...++++..++.+.++++.+++.++.+++.||++++||||
T Consensus 226 ~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 226 FISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999998877543 4577788888777888889999999999999999999999999999999
Q ss_pred CccchhhhccCCCCccchHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy6064 376 GLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGD 442 (568)
Q Consensus 376 g~lP~~f~~v~~r~~~P~~Ail~~~~i~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~ 442 (568)
|.+|++|+|+| | ++|.++++++++++.++.+..+++.+.++.+++.+++|.+++++.+++|+++|
T Consensus 306 g~lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 306 GELPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp SSCCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred CCCCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999998 4 56999999999999999999999999999999999999999999999988775
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1.7e-39 Score=351.96 Aligned_cols=347 Identities=16% Similarity=0.141 Sum_probs=253.0
Q ss_pred CccccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChhHHHHHHHHHHHH-HHhhhcc---------cchh--h--
Q psy6064 79 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVVKN---------PNLR--V-- 144 (568)
Q Consensus 79 ~~~~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~~~~~~li~~v~~-~~~a~~~---------P~~~--Y-- 144 (568)
+++++||+++++++++++++.++| ++..+. ...+||..++.+++++++. ++.+++| | -+ |
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~---~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT---FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH---HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 456789999999999999999986 333333 2568898777777777664 3466644 5 33 3
Q ss_pred -------HHHHHHHHHHHHHHhhhhHHHHHHHHh-c-cc-cCCC---CCcchhHHHHHHHHHHHHHHHhcchhHHHHHHH
Q psy6064 145 -------LNSDVKAISNQIDSLMGNAYQKSMESL-L-PI-KSSF---LSSYPDFIAPIFVAVITGLLSWGASESAKVNNV 211 (568)
Q Consensus 145 -------~~~~~~~w~~~l~~~~~~~~~~~~~~~-~-~~-~~~~---~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~ 211 (568)
..++..+|.+++++.+..+........ + .. ..+. .++...+++++++++++.+|++|+|..++++++
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~ 158 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKV 158 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHHTHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 678999999999887755443222111 1 11 0111 122345778889999999999999999999999
Q ss_pred HHHHHHH-HHHHHHhhhcccccCCC---CcccccCCCCCCCCCCCCccccchhHHHHhHHHHhhhhhhhhHHhhhhhhhc
Q psy6064 212 LTFANLG-TVAIIVFSGLFRLNPAN---WTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETR 287 (568)
Q Consensus 212 ~~~~~~~-~l~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 287 (568)
...++++ .++++++.++......+ .+.....+++++ . ..+.+.++...+|+|.|+|.+++++||+|
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~a~~G~e~~~~~a~E~k 228 (511)
T 4djk_A 159 GFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------S---KVGTLVVFVAFILSYMGVEASATHVNEMS 228 (511)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------T---STTTTTTHHHHHHHHTTGGGGTGGGSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------c---cchHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 9888654 35555555554322111 111111111111 0 11234566788999999999999999999
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHH----HhC--hhHHHHHHHHHHHHHHHHHHHHH
Q psy6064 288 NPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFD----RLG--WPVMKWLVTVGSLFALFTAMFGA 361 (568)
Q Consensus 288 nP~r~iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~----~~~--~~~~~~iv~~~~~~~~~~~~~~~ 361 (568)
||+|++|||++.++.++.++|++.++++..++|+++...+++..+.+. ..+ .++...++.+.++++.+++.++.
T Consensus 229 ~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
T 4djk_A 229 NPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASW 308 (511)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988876666555443 345 57788899999999999999999
Q ss_pred hchhHHHHHHHHhcCccchhhhccCCCCccchHHHHHHHHHHH-HHHHHhc--------HHHHHHHHHHHHHHHHHHHHH
Q psy6064 362 FFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITA-VMSAVFK--------LDQLVDMMSIGTLLAYIIVAI 432 (568)
Q Consensus 362 ~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail~~~~i~~-~~~~~~~--------~~~l~~~~~~~~~i~y~~~~~ 432 (568)
+++.||++++|||||.+|++|+|+| |+++|++|++++.++.. .+..+.+ ++.+.++.++..+++|.++++
T Consensus 309 ~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~ 387 (511)
T 4djk_A 309 IVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFI 387 (511)
T ss_dssp TTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 57999999999854433 3333333 789999999999999999999
Q ss_pred HHhhhcccCC
Q psy6064 433 CVLLLRYSGD 442 (568)
Q Consensus 433 ~~l~~r~~~~ 442 (568)
+++++|+|++
T Consensus 388 ~~~~~r~~~~ 397 (511)
T 4djk_A 388 GYIVLVLKHP 397 (511)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999999886
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.74 E-value=2.1e-05 Score=83.86 Aligned_cols=265 Identities=14% Similarity=0.046 Sum_probs=128.3
Q ss_pred ccccccChhHHHHHhhcccccchhhhhhhHhHhhhcChh---HHHHHHHHHHHHHHhhh-c-c-------c-------ch
Q psy6064 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS---VVISFAIAAVTSLFSVV-K-N-------P-------NL 142 (568)
Q Consensus 82 ~l~r~l~~~~~~~i~i~~~ig~gif~~~g~v~~~~~Gp~---~~~~~li~~v~~~~~a~-~-~-------P-------~~ 142 (568)
+.+|+.++++.+.+=++..+..+.+..-+... . |-. .+++.+++.++..+... . . | .+
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~F 98 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPF 98 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTS
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhc
Confidence 44578999999999888777666665544422 2 332 55555555554332222 1 1 2 11
Q ss_pred h-h--------HHHHHHHHHHHHHHhhhhHHHHHHHHhccccCCCCCcchhHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Q psy6064 143 R-V--------LNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLT 213 (568)
Q Consensus 143 ~-Y--------~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~i~~~~~ln~~g~~~~~~~~~~~~ 213 (568)
+ | ..-...+|...-.+..+..+...+...+.. . ...+..+++.++...+.+.|.|...+++.+..
T Consensus 99 G~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~-----~-~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~ 172 (501)
T 2jln_A 99 GIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF-----T-NLPLWIVIFGAIQVVTTFYGITFIRWMNVFAS 172 (501)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----C-CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----c-hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 1 1 223334554433333333333322221111 1 12233444555667778999999999999988
Q ss_pred HHHHHHHHHHHhhhcccccCCCCcccccCCCCCCCCCCCCccccchhHHHHhHHH-HhhhhhhhhHHhhhhhhhcCcccc
Q psy6064 214 FANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAK-CFFGFVGFDGIATTGEETRNPKRN 292 (568)
Q Consensus 214 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~-~~~~~~G~e~~~~~a~E~knP~r~ 292 (568)
.+.++.++.+.+..+...+. .+..... . ...+ ..+ +++.++.. ..+...+.-..+..+.+.|+++..
T Consensus 173 p~~~i~~i~~~~~~l~~~g~-~~~~~~~----~--~~~~----~~~-~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~ 240 (501)
T 2jln_A 173 PVLLAMGVYMVYLMLDGADV-SLGEVMS----M--GGEN----PGM-PFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNA 240 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CHHHHTT----C--CCSS----CCS-CHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTC
T ss_pred HHHHHHHHHHHHHHHHhcCC-cchhhhc----c--CCcc----chH-HHHHHHHHHHHHHHHHHhccCcccccCCCCccc
Confidence 88777766666555443321 0010000 0 0000 011 24444433 222223434567788888876551
Q ss_pred -----------hhhHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCCCCHHHHHHHhChhHH-HHHHH-HHHHHHHHHHHH
Q psy6064 293 -----------IPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVM-KWLVT-VGSLFALFTAMF 359 (568)
Q Consensus 293 -----------iP~ai~~s~~~~~v~y~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~iv~-~~~~~~~~~~~~ 359 (568)
.-.+...+..+..++..++.+..... ....+|...+.....++.+ ..+.. +.++++.+++..
T Consensus 241 ~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~ 315 (501)
T 2jln_A 241 SREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNP 315 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333332222222222211 1123354444332333323 55566 667777776666
Q ss_pred -HHhchhHHHHHHH
Q psy6064 360 -GAFFPLPRILYAM 372 (568)
Q Consensus 360 -~~~~~~sR~l~a~ 372 (568)
+.+++.+--+..+
T Consensus 316 ~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 316 AANLLSPAYTLCST 329 (501)
T ss_dssp HHHTHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHh
Confidence 3677777766665
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.23 E-value=0.049 Score=58.20 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=29.8
Q ss_pred CCCHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q psy6064 327 DAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRIL 369 (568)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l 369 (568)
+..+....+ ..+++..-++..+++.+.+++..+.+.+.+-.+
T Consensus 307 d~~~p~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~ 348 (530)
T 3dh4_A 307 DKAYPWLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 348 (530)
T ss_dssp GGHHHHHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445555555 666777777778888888888888877777653
No 6
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=96.96 E-value=0.31 Score=51.48 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCccccc--CCCCCCCCCCCCccccchhHHHH
Q psy6064 188 PIFVAVITGLLSWGA-SESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRRE--AIPPGVRGGSGGFAPFGVNGIVT 264 (568)
Q Consensus 188 ~~~i~~~~~ln~~g~-~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~g~~~~~~ 264 (568)
+++.+++..+...|+ |...|+..++...-.+.++++.+-++...++. +..... +.+. .+-+... ...-+..
T Consensus 173 ~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~-~~A~~Gl~~~~~---Pd~s~L~--~~~vw~~ 246 (519)
T 2a65_A 173 LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPN-GTAADGLNFLWT---PDFEKLK--DPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETT-EEHHHHHHHHHS---CCTTSTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHhc---CCHHHhC--CHHHHHH
Confidence 344455666778899 77999999998887777777777766654411 000000 0000 0001111 1234778
Q ss_pred hHHHHhhhhh-hhhHHhhhhhhhcCcccchhhHHHHHHHHHHHHHHH
Q psy6064 265 GAAKCFFGFV-GFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFS 310 (568)
Q Consensus 265 ~~~~~~~~~~-G~e~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l 310 (568)
++..++|++. |+-....++.-.|+ +.|++|........-..+.++
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 8888999885 77777777776664 677888766666655555443
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=96.43 E-value=0.26 Score=53.26 Aligned_cols=97 Identities=14% Similarity=0.203 Sum_probs=55.4
Q ss_pred hhhhhhh-HHhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHH-HHHhh-hc-c---------------CCCc-CCCCCH
Q psy6064 271 FGFVGFD-GIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIA-VVITM-IV-P---------------YYEQ-NADAPF 330 (568)
Q Consensus 271 ~~~~G~e-~~~~~a~E~knP~r~iP~ai~~s~~~~~v~y~l~~-~~~~~-~~-p---------------~~~~-~~~~~~ 330 (568)
..|.|.+ ...+-.=+.||+ |+..|+...+.....++.++.. +.+.. .. . ..+. +.+..+
T Consensus 261 ~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 339 (593)
T 2xq2_A 261 LYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAY 339 (593)
T ss_dssp HHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHH
T ss_pred HHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHH
Confidence 3455555 345556677876 5577887776655444433221 11111 11 0 1111 223345
Q ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q psy6064 331 PAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRIL 369 (568)
Q Consensus 331 ~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~sR~l 369 (568)
.... +..+++..-++.++++.+.+++..+.+.+.|-.+
T Consensus 340 p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 340 PWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 6677888888888888888888888777777653
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=74.94 E-value=33 Score=35.89 Aligned_cols=89 Identities=10% Similarity=0.039 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHH--HHHHHHHHHHHHh------cHHHH
Q psy6064 344 WLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTA--LSGVITAVMSAVF------KLDQL 415 (568)
Q Consensus 344 ~iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail--~~~~i~~~~~~~~------~~~~l 415 (568)
.++....++..+....++.-+.+-++-.++..|. .+| ..+.+..| +.++++..+.+.+ .++..
T Consensus 411 ~i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g~-------~~p--~~~~rifWgv~~g~va~~LL~~GG~~~L~aLQt~ 481 (539)
T 4ain_A 411 QIMGIIAMILLGTFFITSADSASTVMGTMSQHGQ-------LEA--NKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNV 481 (539)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTTC-------SSC--CHHHHHHHHHHHHHHHHHHTTC-----CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHcCCC-------CCC--CcchhhHHHHHHHHHHHHHHHhCCHHHHHHHHhh
Confidence 3344444444444445556666777777775542 122 12233333 2333444433333 35556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccC
Q psy6064 416 VDMMSIGTLLAYIIVAICVLLLRYSG 441 (568)
Q Consensus 416 ~~~~~~~~~i~y~~~~~~~l~~r~~~ 441 (568)
.-+.++.+.+..++.+.++++--+++
T Consensus 482 ~ii~alPf~~v~llm~~sl~k~l~~d 507 (539)
T 4ain_A 482 TIVAATPFLFVVIGLMFALVKDLSND 507 (539)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 66777778788888888877765544
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=55.98 E-value=1.9e+02 Score=29.95 Aligned_cols=90 Identities=11% Similarity=0.028 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHhcCccchhhhccCCCCccchHHHH--HHHHHHHHHHHHh---cHHHHHHHH
Q psy6064 345 LVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTA--LSGVITAVMSAVF---KLDQLVDMM 419 (568)
Q Consensus 345 iv~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~v~~r~~~P~~Ail--~~~~i~~~~~~~~---~~~~l~~~~ 419 (568)
++.+..++..+.-..++.-+.+-++-.++.+|.- .+.+| ..+.+..| +.++++..+.+.+ .++...-+.
T Consensus 411 i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~----~~~~p--~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~ 484 (509)
T 2wsw_A 411 ATMWGFFILCFIATVTLINACSYTLAMSTCRSMK----EGADP--PLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAG 484 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCC----TTCCC--CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCC----CCCCC--ChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333344444444556666677777777766521 11121 22222332 3344444444444 466667777
Q ss_pred HHHHHHHHHHHHHHHhhhccc
Q psy6064 420 SIGTLLAYIIVAICVLLLRYS 440 (568)
Q Consensus 420 ~~~~~i~y~~~~~~~l~~r~~ 440 (568)
++.+.+..++.+.++++--++
T Consensus 485 alPf~~v~l~~~~sl~k~l~~ 505 (509)
T 2wsw_A 485 GCPLFFVNIMVTLSFIKDAKV 505 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHh
Confidence 888887777777777665333
No 10
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=9.16 E-value=2.4e+02 Score=20.24 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccccccccccC
Q psy6064 542 VRFLVWLVLGMVVYFTYSIDHSKQKAK 568 (568)
Q Consensus 542 ~~~~~~~~~g~~~y~~~~~~~~~~~~~ 568 (568)
..++..+..|+.++...+.+|++++.+
T Consensus 16 g~~~lll~~glcI~ccvkcrhRrrqAe 42 (70)
T 2klu_A 16 GVAGLLLFIGLGIFFSVRSRHRRRQAE 42 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSSCT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Done!