RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6064
(568 letters)
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 557
Score = 383 bits (984), Expect = e-127
Identities = 196/549 (35%), Positives = 298/549 (54%), Gaps = 81/549 (14%)
Query: 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV----- 136
++ R L DL LG+G+T+G G+YVL G VARN +GP++V+SF I+ + ++ S
Sbjct: 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAE 84
Query: 137 --VKNPN-------LRVLNSDV---------------------KAISNQIDSLMGNAYQK 166
+ P V ++ ++ S D L+ +
Sbjct: 85 FGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQ 144
Query: 167 SMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFS 226
+ + L+ YPDF A + ++ LLS+G ESA VN + T N+ + ++ +
Sbjct: 145 FRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIA 204
Query: 227 GLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEET 286
G + + ANW+I E G+GGF P+G G+++GAA CFF F+GFD IATTGEE
Sbjct: 205 GFTKADVANWSITEEK-------GAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV 257
Query: 287 RNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLV 346
+NP+R IP+ I+ SLL+ FV YF ++ +T+++PYY + DAPFP F+ +GW K++V
Sbjct: 258 KNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIV 317
Query: 347 TVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVM 406
VG+L + T++ G FPLPR++YAM+RDGLL++ L+ ++S+T+TP+ +T +SG I A+M
Sbjct: 318 AVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALM 377
Query: 407 SAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDEVV--------VETCDSEVDFVHV 458
+ +F L LVD++SIGTLLAY +VA CVL+LRY V +T DS V F
Sbjct: 378 AFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSK 437
Query: 459 D---------------------TLANTYKD-MTREDSASTELTNVTDKSQLNIQRDKNQS 496
L + + E + LT L + Q
Sbjct: 438 SESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQP 497
Query: 497 SNQQQYLSGQNTGRLKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYF 556
N+Q ++ FKVP VP +P LS+ +NI+LM+ LD TWVRF +W+ +G ++YF
Sbjct: 498 QNKQ---------KVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYF 548
Query: 557 TYSIDHSKQ 565
Y I HS +
Sbjct: 549 LYGIRHSLE 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter. [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 429
Score = 164 bits (416), Expect = 7e-45
Identities = 85/253 (33%), Positives = 137/253 (54%), Gaps = 16/253 (6%)
Query: 187 APIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPG 246
A + V +T +L GA ES KVN++L + + + G N+T
Sbjct: 137 ALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYT--------- 187
Query: 247 VRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFV 306
F P G G+ A FF F+GF+ I+T EE +NP+R+IP AIILSL++V +
Sbjct: 188 ------PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTL 241
Query: 307 CYFSIAVVITMIVPYYE-QNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPL 365
Y +A VI VP+ + + AP + LG + ++T G++F++ + M +
Sbjct: 242 LYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGT 301
Query: 366 PRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLL 425
R+L+AMSRDGLL LS V +T TP +S + + A+++++ L+ L ++ SIGTL+
Sbjct: 302 SRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLI 361
Query: 426 AYIIVAICVLLLR 438
A+ V + V++LR
Sbjct: 362 AFAAVNVAVIILR 374
Score = 59.0 bits (143), Expect = 3e-09
Identities = 28/53 (52%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 83 LARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 135
L+R LGL DLTMLG+GA +G G++V+ G A +AGP+V++SF +A +T+LF
Sbjct: 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFI 52
Score = 50.9 bits (122), Expect = 1e-06
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 513 FKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTY 558
F+ P VP++P L + IYL++NL T V FLVW++LG V YF Y
Sbjct: 384 FRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFIY 429
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 164 bits (416), Expect = 1e-44
Identities = 116/396 (29%), Positives = 189/396 (47%), Gaps = 46/396 (11%)
Query: 82 QLARVLGLID-LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVV--- 137
+L + LGL D LT LGVG+ +G G++ L GS A P+ ++++ IA + LF +
Sbjct: 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAA--GLAPAAILAWLIAGIIILFLALSYA 66
Query: 138 ----KNPNL--------RVLNSDVKAI---SNQIDSLMGNAYQKS-----MESLLPIKSS 177
P+ R L + + + ++ A + L P
Sbjct: 67 ELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGL 126
Query: 178 FLSS--YPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPAN 235
IA +A++T L G SAK+N+++T + + I + GLF +N
Sbjct: 127 LSIGPLLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN 186
Query: 236 WTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPL 295
+ P GGS G GI+ FF F GF+ IAT EE +NPKR IP
Sbjct: 187 GNL---FAPFNPGGGSFG-------GILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPR 236
Query: 296 AIILSLLIVFVCYFSIAVVITMIVPY---YEQNADAPFPAIFDRLGWPVMKWLVTVGSLF 352
AIILSLLIV + Y A+VI ++P AP G ++ + +L
Sbjct: 237 AIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALL 296
Query: 353 ALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKL 412
+LF ++ + R+LYAM+RDGLL + + V+ + +TP+++ L+G+I+ ++ +F L
Sbjct: 297 SLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPL 356
Query: 413 -----DQLVDMMSIGTLLAYIIVAICVLLLRYSGDE 443
+ LV + S+ L+AY++VA+ +L+LR +
Sbjct: 357 SSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPD 392
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 112 bits (281), Expect = 1e-26
Identities = 87/389 (22%), Positives = 161/389 (41%), Gaps = 52/389 (13%)
Query: 87 LGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLN 146
L L+ L +G+ +G G++V + AG + ++ IAA+ +V L+
Sbjct: 1 LSLLSAFALVIGSIIGSGIFVTPLIAS---AGAAAILWGWIAALIFSLAVA--LVYAELS 55
Query: 147 SDVK-----------AISNQIDSLMGNAYQKSMESLLPIKSSFLSSY------PDF---- 185
S A + + + L SS + Y PD
Sbjct: 56 SAFPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSVAAQYLLSAFFPDLVGNT 115
Query: 186 -----IAPIFVAVITGLLSWGASESAKVNNVLTFAN-LGTVAIIVFSGLFRLNPANWTIR 239
IA + + + G ESAK+ N+L L + +I+ GL
Sbjct: 116 WLTYGIAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLALGG----- 170
Query: 240 REAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299
+ F P G G+ G + F GF+ A EE KR++P A+ +
Sbjct: 171 ---GFNLLPNSWTTFFPSGWPGVFLGLLIVLWSFGGFESAANVSEE--VKKRDVPKALFI 225
Query: 300 SLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAI----FDRLGWPVMKWLVTVGSLFALF 355
LLIV V Y + ++ +VP E + P++ F+ +G P +V + +L
Sbjct: 226 GLLIVGVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLL 285
Query: 356 TAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVF----- 410
A+ A R+L A++RDG+L + + V ++ +P+ + L+ +++ ++ +F
Sbjct: 286 GAVNTAIVASSRVLEALARDGVLPKFFAKV-NKFGSPVRALILTAILSLILLLLFLLSGA 344
Query: 411 KLDQLVDMMSIGTLLAYIIVAICVLLLRY 439
+ L+ + ++G LL Y+++ I +L+LR
Sbjct: 345 AYNALLSLSAVGYLLVYLLLIIGLLILRK 373
>gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease. This is the
C-terminus of AA-permease enzymes that is not captured
by the models pfam00324 and pfam13520.
Length = 51
Score = 90.0 bits (224), Expect = 2e-22
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 513 FKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHS 563
FKVP VP +P LS+ +NIYLM+ LD TW+RF VWL++G+++YF Y I HS
Sbjct: 1 FKVPLVPFLPALSILINIYLMVQLDALTWIRFAVWLLIGLLIYFGYGIRHS 51
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 90.1 bits (224), Expect = 4e-19
Identities = 73/391 (18%), Positives = 139/391 (35%), Gaps = 49/391 (12%)
Query: 91 DLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVK 150
+ M+ +G +G G++V +GSV ++ + IA V +++ +
Sbjct: 1 HVLMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLIAGVVIFLTMLSLGEMSTNGPVAG 60
Query: 151 AISNQIDSLMGNA--------YQKSMESLLP-------IKSSFLSSYPDFIAP-----IF 190
+G + Y S ++ I F PD +F
Sbjct: 61 GFYAYASRFLGPSLGFATGWNYWLSWIFVIALELTAASILIQFWELVPDIPYLWVWGAVF 120
Query: 191 VAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLF-------RLNPANWTIRREAI 243
+ ++ + G + + + + G + A
Sbjct: 121 IVLLLIINLVGVKGYGEAEFWFALIKVIAIIGFIIVGFIIPLSGGGPNDGAYLGY----- 175
Query: 244 PPGVRGGSGGFAP---FGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILS 300
G GFA + FF F G + + E +NP++ IP AI+ +
Sbjct: 176 NGGKNNFPPGFASPGTGSFANFFSVFVIAFFAFTGIELVGNAAGEVKNPRKAIPKAILQA 235
Query: 301 LLIVFVCYFSIAVVITMIVPY-------YEQNADAPFPAIFDRLGWPVMKWLVTVGSLFA 353
+ + + Y + I ++VP+ +A +PF F LG + L+ L A
Sbjct: 236 VWRITIFYILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSLGISGLAPLINAVILTA 295
Query: 354 LFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVIT--AVMSAVFK 411
+A + + R+LYA++RDGL + L V PL + LS I+ AV+ A
Sbjct: 296 ALSAANSSLYSGSRVLYALARDGLAPKFLKKVDKS-GVPLRAILLSTAISLLAVLLASLN 354
Query: 412 LDQ----LVDMMSIGTLLAYIIVAICVLLLR 438
L+ + + L+ + ++++ L R
Sbjct: 355 PAIVFNFLLAISGLIGLIVWGLISLSHLRFR 385
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional.
Length = 445
Score = 87.2 bits (216), Expect = 3e-18
Identities = 88/394 (22%), Positives = 158/394 (40%), Gaps = 74/394 (18%)
Query: 80 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSV-VISFAIAAVTSL----- 133
+ +L R LG + + VG T+G G++V G VA+ P + V++F I + +
Sbjct: 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCV 62
Query: 134 --------------FSVVKNPNLRVLN----------SDVKAISNQIDSLMGNAYQKSME 169
+ +KN R L +D ++S +M A ++
Sbjct: 63 YAELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLS-----IMALAIVSNLG 117
Query: 170 SLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLF 229
L PI FIA + L A ++T A + I++ G+F
Sbjct: 118 FLTPIDPLLGK----FIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIF 173
Query: 230 RLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNP 289
N+ A G +G F ++ G + + + G I E +NP
Sbjct: 174 WFKAENFA----APTTTAIGATGSFM-----ALLAGISATSWSYTGMASICYMTGEIKNP 224
Query: 290 KRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYE-QNADAP-------FPAIFDRLGW-- 339
+ +P A+I S L+V V Y +A+VI+ ++P+ + N++ P PA+ G
Sbjct: 225 GKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFV 284
Query: 340 PVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALS 399
+ +V +GSL + M+ PR+ YAM++D L ++ +V + TP +S L
Sbjct: 285 AITAMIVILGSLSSCV--MYQ-----PRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQ 337
Query: 400 GVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAIC 433
G + + + + +LL Y + +C
Sbjct: 338 GALGIF---------FIFVSDLTSLLGYFTLVMC 362
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 85.3 bits (211), Expect = 1e-17
Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 19/272 (6%)
Query: 174 IKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLF--RL 231
+S F A +F V G+ G E+AK+ V+T + +A+ VF G
Sbjct: 112 CESLFPVGPGWLAALVFYIVFIGINILGVGEAAKLEFVVTA--VAIIALGVFIGAMVPHF 169
Query: 232 NPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKR 291
+ AN + G + G+ F P G+ + F+ +G+A EET+NPKR
Sbjct: 170 DSAN-------LFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222
Query: 292 NIPLAIILSLLIVFVCYFSIAVVITMIVPYYE-QNADAPFP----AIFDRLGWPVMKWLV 346
+IP +I ++L + I VV E ++ P P +I+ W + +++
Sbjct: 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTW-MSQFVN 281
Query: 347 TVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVM 406
VG LF L + G + R ++A+SR G L E LS V +R + P+L+ + GVI +
Sbjct: 282 LVG-LFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKV-NRKKAPVLAIVVPGVIGFGL 339
Query: 407 SAVFKLDQLVDMMSIGTLLAYIIVAICVLLLR 438
S + ++ + G +++Y++ LR
Sbjct: 340 SLTGQTALIILVSVFGAIISYVLSMAAHFTLR 371
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 79.0 bits (195), Expect = 2e-15
Identities = 91/426 (21%), Positives = 161/426 (37%), Gaps = 61/426 (14%)
Query: 55 SIAEGKNPAGGADGVGKLPLERASDAP---QLARVLGLIDLTMLGVGATLGVGVYVLAGS 111
S + N + G K D L + + L+ + VG +G G++V
Sbjct: 9 SQSNATNYQFSSSGRKKSVSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKG 68
Query: 112 VARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAIS---NQIDSLMGN--AYQK 166
V +N AG SV ++ + AV +FS+V L + + N I + G A+ +
Sbjct: 69 VLKN-AG-SVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLR 126
Query: 167 SMESLLPIKSS------------FLSS-YPD---------FIAPIFVAVITGLLSWGASE 204
LL I+ L+ +PD +A + V ++T +
Sbjct: 127 LWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKW 186
Query: 205 SAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFG------ 258
+ +V ++ T L + +I+ +G +L G GG
Sbjct: 187 ATRVQDIFTACKLLALLLIIITGWVQL------------------GKGGVESLNPKNAFE 228
Query: 259 -----VNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAV 313
GIV + + G++ + EE +NP R +P+AII+S+ IV Y +
Sbjct: 229 GTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNI 288
Query: 314 VITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMS 373
++ E A F VM W + + F ++ G+ F R+ +
Sbjct: 289 AYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGG 348
Query: 374 RDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAIC 433
R+G L LS + + TPL S + +T +M + L++++S L +
Sbjct: 349 REGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAG 408
Query: 434 VLLLRY 439
+L LRY
Sbjct: 409 LLWLRY 414
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 76.1 bits (188), Expect = 1e-14
Identities = 92/396 (23%), Positives = 162/396 (40%), Gaps = 67/396 (16%)
Query: 92 LTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVVKNPNLRVLNSDVK 150
L M+ +G +G G++V +G A +QAGP ++I++ I + F + L V
Sbjct: 51 LQMIAIGGAIGTGLFVGSGK-ALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG 109
Query: 151 AISNQIDSLMGNA--------YQKSMESLLP---IKSSFLSSY--PD------FIAPIFV 191
+ S + A Y + LP +S + Y PD +IA IF+
Sbjct: 110 SFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIA-IFL 168
Query: 192 AVITGLLSWGA-----SE----SAKVNNVLTFANLGTVAIIVFSGLFRLNP---ANWTIR 239
+I L +G +E S KV ++ F LG II+ G + N+
Sbjct: 169 VLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILG---IIIICGGGPTHGYIGFNYWHD 225
Query: 240 REAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299
A GGF F + V A F F G + + E+ NP+++IP AI
Sbjct: 226 PGAFA-------GGFKGF-CSVFVIAA----FSFSGTELVGLAAGESENPRKSIPKAIKQ 273
Query: 300 SLLIVFVCYFSIAVVITMIVPYYEQN---------ADAPFPAIFDRLGWPVMKWLVTVGS 350
+ + Y VI ++VPY + A +PF G PV ++
Sbjct: 274 VFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVI 333
Query: 351 LFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLS---TALSGVITAVMS 407
L ++ +A + R+LY++++ G + + V R PL++ T L G++ A ++
Sbjct: 334 LTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKV-DRRGVPLVALLVTLLFGLL-AFLN 391
Query: 408 AVFKLDQ----LVDMMSIGTLLAYIIVAICVLLLRY 439
+ FK L+++ + +A+ + + + R
Sbjct: 392 SSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRR 427
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease. GABA permease
(gabP) catalyzes the translocation of 4-aminobutyrate
(GABA) across the plasma membrane, with homologues
expressed in Gram-negative and Gram-positive organisms.
This permease is a highly hydrophobic transmembrane
protein consisting of 12 transmembrane domains with
hydrophilic N- and C-terminal ends. Induced by
nitrogen-limited culture conditions in both Escherichia
coli and Bacillus subtilis, gabP is an energy dependent
transport system stimulated by membrane potential and
has been observed adjacent and distant from other GABA
degradation proteins. GabP is highly homologous to amino
acid permeases from B. subtilis, E. coli, as well as to
other members of the amino acid permease family
(pfam00324). A member of the APC
(amine-polyamine-choline) transporter superfamily, GABA
permease possesses a "consensus amphiphatic region"
(CAR) found to be evolutionarily conserved within this
transport family. This amphiphatic region is located
between helix 8 and cytoplasmic loop 8-9, forming a
potential channel domain and suggested to play a
significant role in ligand recognition and
translocation. Unique to GABA permeases, a conserved
cysteine residue (CYS-300, E.coli) located at the
beginning of the amphiphatic domain, has been determined
to be critical for catalytic specificity [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 452
Score = 75.7 bits (186), Expect = 2e-14
Identities = 82/384 (21%), Positives = 165/384 (42%), Gaps = 53/384 (13%)
Query: 92 LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKA 151
+TML + +G G++V +GS AGP+ ++++ +A + +F + + V N D +
Sbjct: 19 VTMLSIAGVIGAGLFVGSGSAI-ASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGS 77
Query: 152 ISNQIDSLMGNAYQKSMESL--------LPIKSSFLSS-----YPDFIAPIFVAVITGLL 198
S D +G ++ L +P+++ + +PD +F ++T +L
Sbjct: 78 FSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIPLWLFSLILTIVL 137
Query: 199 SWGASESAKVNNVLTFANLG----------TVAIIVFSGLFRLNPANWTIRREAIPPGVR 248
+ + N+ + + G +AII F L + + E
Sbjct: 138 T--------LTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNL 189
Query: 249 GGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLA---IILSLLIVF 305
G GGF P G+ ++ F F+G + + E+ NP ++I A +I +++ +
Sbjct: 190 TGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFY 249
Query: 306 VCYFSIAVVITMIVPYYEQN--ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFF 363
+ SI +V+ ++P+ N + A+ + LG P K ++ L A+ + + A +
Sbjct: 250 LG--SIFIVVA-LLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALY 306
Query: 364 PLPRILYAMSRDGLLYERLSYVSSRTQTP----LLSTALSGVITAVMS-----AVFKLDQ 414
R+LY+++ G + ++ P L ST +T V++ VF
Sbjct: 307 TTSRMLYSLAERGDAPRVFMKL-NKKGVPVQAVLASTFF-SFLTVVVNYFAPDKVFLF-- 362
Query: 415 LVDMMSIGTLLAYIIVAICVLLLR 438
LV+ LL Y+++A+ L +R
Sbjct: 363 LVNSSGAIALLVYLVIAVSQLRMR 386
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases
[Amino acid transport and metabolism].
Length = 462
Score = 75.4 bits (186), Expect = 2e-14
Identities = 51/209 (24%), Positives = 97/209 (46%), Gaps = 18/209 (8%)
Query: 252 GGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAI---ILSLLIVFVCY 308
GGF P G G ++ F F G + + T E ++P++ IP AI I +LI +V
Sbjct: 195 GGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVG- 253
Query: 309 FSIAVVITMIVPYYEQNADA-PFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPR 367
S+ VI + P+ + D PF +F +G P ++ L A +A+ + R
Sbjct: 254 -SL-FVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSR 311
Query: 368 ILYAMSRDGLLYERLSYVSSRTQTP---LLSTALSGVITAVMSA-----VFKLDQLVDMM 419
+LY++++ G + + +S R P +L +A+ ++ V++ VF+L +
Sbjct: 312 MLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGVVLNYILPEKVFEL--VTSSS 368
Query: 420 SIGTLLAYIIVAICVLLLRYSGDEVVVET 448
+G L ++++ + L LR + +
Sbjct: 369 GLGLLFVWLMILLSQLKLRKAKPAEGKKL 397
Score = 35.7 bits (83), Expect = 0.057
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 81 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 134
L R L + ++ +G +G G+++ +GS AGPSV++++ IA +
Sbjct: 9 QGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIA-MAGPSVLLAYLIAGIFVFL 61
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional.
Length = 410
Score = 70.3 bits (173), Expect = 7e-13
Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 17/226 (7%)
Query: 191 VAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGG 250
+A++ L GAS SA + V+ + V I ++G + + G
Sbjct: 123 LALLWLLNLRGASSSANLQTVIALLIVALVVAIWWAGDIKPADIPFPAPGSIEWSG---- 178
Query: 251 SGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFS 310
+ F+ FVG + A E +NP+R+ P A+++ LL+ + Y++
Sbjct: 179 -----------LFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWA 227
Query: 311 IAVVITMIVPYYEQNADAP-FPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRIL 369
VV+ Y ++ A A P IF +L W++ V A F ++ R++
Sbjct: 228 CTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLV 287
Query: 370 YAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQL 415
++ +R+G L+ +S+R P+ + AV + L
Sbjct: 288 WSQAREGRPPSYLARLSAR-GVPVNALNAVLGCCAVSILLIYALGL 332
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease). [Transport
and binding proteins, Amino acids, peptides and amines].
Length = 482
Score = 68.2 bits (167), Expect = 4e-12
Identities = 53/202 (26%), Positives = 82/202 (40%), Gaps = 19/202 (9%)
Query: 251 SGGFAPFGVN---GIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFV- 306
+GG+ P G G++ A + G+DG A EE NP+ P AII ++ I V
Sbjct: 209 TGGWKPGGFAFLLGLLNPA----WSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVT 264
Query: 307 --CY-FSIAVVITMIVPYYEQNADAPFPAIF-DRLGWPVMKWLVTVGSLFALFTAMFGAF 362
C+ + + I P IF + LG + L F
Sbjct: 265 GFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCM 324
Query: 363 FPLPRILYAMSRDGLL-YERL-SYVSSRTQTPLLSTALSGVITAVMSAVF-----KLDQL 415
R++YA SRDG L + L S V+ RTQ PL + LS V ++ + +
Sbjct: 325 TANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAI 384
Query: 416 VDMMSIGTLLAYIIVAICVLLL 437
+ ++ ++Y+I IC L
Sbjct: 385 FSVCTVALDVSYVIPIICKLAK 406
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional.
Length = 458
Score = 67.3 bits (164), Expect = 7e-12
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 12/196 (6%)
Query: 252 GGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSI 311
GGF G NG++ A F F G + I T E R+P+++IP A+ + + + Y
Sbjct: 201 GGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGS 260
Query: 312 AVVITMIVPYYEQNAD-APFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILY 370
VV+ + P+ E ++ +PF IF L V+ + L A + + R+L+
Sbjct: 261 LVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLF 320
Query: 371 AMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYII- 429
+S G + L+ VS R P+ S LSG IT S V ++ L+ + G L+A ++
Sbjct: 321 GLSVQGNAPKFLTRVSRRG-VPINSLMLSGAIT---SLVVLINYLLPQKAFGLLMALVVA 376
Query: 430 ------VAICVLLLRY 439
+ IC+ LR+
Sbjct: 377 TLLLNWIMICLAHLRF 392
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 478
Score = 62.7 bits (153), Expect = 2e-10
Identities = 41/197 (20%), Positives = 82/197 (41%), Gaps = 21/197 (10%)
Query: 261 GIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVP 320
G+ + F F G + +A T E NP+++IP A + + V Y +I +VP
Sbjct: 198 GVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVP 257
Query: 321 YYEQN----------ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILY 370
Y + A +PF G V+ + L ++ +A + + R LY
Sbjct: 258 YNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLY 317
Query: 371 AMSRDGLLYERLSYVSSRTQTPLLS---TALSGVITAV-----MSAVFKLDQLVDMMSIG 422
A++ GL + +YV R P ++ ++L G++ + + VF L+++ +
Sbjct: 318 ALAHQGLAPKIFAYV-DRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVF--TWLLNISGLS 374
Query: 423 TLLAYIIVAICVLLLRY 439
++ + + + R
Sbjct: 375 GFFTWMCICLSHIRFRK 391
Score = 33.0 bits (76), Expect = 0.46
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 92 LTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVV 137
+ M+ +G T+G G+ V +G+ A GP ++I +AI + ++ V+
Sbjct: 9 IQMIALGGTIGTGLLVGSGT-ALATGGPAGLLIGYAIMG-SIIYCVM 53
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional.
Length = 446
Score = 61.6 bits (149), Expect = 4e-10
Identities = 98/390 (25%), Positives = 173/390 (44%), Gaps = 69/390 (17%)
Query: 94 MLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAIS 153
ML + +G ++V SVA +AGP+V++++ A + + + + V D + S
Sbjct: 1 MLSIAGVIGASLFV-GSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFS 59
Query: 154 NQIDSLMGNAYQKSMESL--------LPIKSSF----LSSY-PDFIAPIFVAVIT----- 195
D +G ++ L +P++++ L S+ P +F VIT
Sbjct: 60 TYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTG 119
Query: 196 -GLLS---WGASES----AKVNNVLTFANLGTVAIIVF------SGLFRLNPANWTIRRE 241
LLS +G E KV +L F LG VAI F SG+ RL W
Sbjct: 120 SNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRL----WD---- 171
Query: 242 AIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLA---II 298
SGGF P G +++ F F+G + + E+ P+++I A +I
Sbjct: 172 ---------SGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVI 222
Query: 299 LSLLIVFVCYFSIAVVITMIVPYYEQNADA--PFPAIFDRLGWPVMKWLVTVGSLFALFT 356
+ I ++C SI VV+ +I P+ A + ++ + L P K ++ L ++ +
Sbjct: 223 WRISIFYLC--SIFVVVALI-PWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTS 279
Query: 357 AMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALS---GVITAVM-----SA 408
+ A + R+LY++SR G + + +R++TP ++ LS +T V+ +
Sbjct: 280 CLNSALYTASRMLYSLSRRGDAPAVMGKI-NRSKTPYVAVLLSTGAAFLTVVVNYYAPAK 338
Query: 409 VFKLDQLVDMMSIGTLLAYIIVAICVLLLR 438
VFK L+D LL Y+++A+ L +R
Sbjct: 339 VFKF--LIDSSGAIALLVYLVIAVSQLRMR 366
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional.
Length = 456
Score = 60.7 bits (147), Expect = 9e-10
Identities = 89/392 (22%), Positives = 167/392 (42%), Gaps = 52/392 (13%)
Query: 74 LERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 133
+E QL R L + ++ +G +G G+++ + SV ++ AGP +++ +AIA +
Sbjct: 1 MEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIA- 58
Query: 134 FSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQK--------------------SMESLLP 173
F +++ V+ V S AY+ +M L
Sbjct: 59 FLIMRQLGEMVVEEPVAG------SFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTA 112
Query: 174 IKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTF-----ANLGTVAIIVFSG- 227
+ YP+ + AV +++ + KV + F + VA+I+F G
Sbjct: 113 VGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGW 172
Query: 228 -LFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEET 286
LF N G GF P G G+V A F F G + + T E
Sbjct: 173 LLFSGNGGPQATVSNLWDQG------GFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA 226
Query: 287 RNPKRNIPLA---IILSLLIVFVCYFSIAVVITMIVPYYEQNAD-APFPAIFDRLGWPVM 342
NP+++IP A +I +LI ++ S+AV+++++ P+ AD +PF IF LG +
Sbjct: 227 DNPEQSIPKATNQVIYRILIFYIG--SLAVLLSLM-PWTRVTADTSPFVLIFHELGDTFV 283
Query: 343 KWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVI 402
+ + L A + + R+L+ +++ G + L+ V R P+ + +S ++
Sbjct: 284 ANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRG-VPVNTILVSALV 342
Query: 403 TAVMSAVFKLDQLVDMMSIGTLLAYIIVAICV 434
TA+ ++ L + G L+A ++ A+ +
Sbjct: 343 TAL---CVLINYLAPESAFGLLMALVVSALVI 371
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional.
Length = 471
Score = 58.3 bits (141), Expect = 5e-09
Identities = 59/233 (25%), Positives = 107/233 (45%), Gaps = 17/233 (7%)
Query: 207 KVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRG-GSGGFAPFGVNGIVTG 265
KV +L F LG AI F + +PA PG+R + G+ P G I+
Sbjct: 162 KVVTILAFIVLGGAAIFGFIPMQDGSPA----------PGLRNLTAEGWFPHGGLPILMT 211
Query: 266 AAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQN 325
F F G + I ET NP + IP+AI ++ + + + +V+ ++P +
Sbjct: 212 MVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAG 271
Query: 326 -ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSY 384
+PF +F+++G P + L A+ +A + R+L+++S +G L +
Sbjct: 272 VEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFAR 331
Query: 385 VSSRTQTPLLSTALS--GVITAVMSAVFKLDQLVDMMSIGTLLAYIIV--AIC 433
++ R PL + ++S G + A+ S+V D + +S + A + V +IC
Sbjct: 332 LTKRG-IPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSIC 383
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine
antiporter (APA) family. This family includes several
families of antiporters that, rather commonly, are
encoded next to decarboxylases that convert one of the
antiporter substrates into the other. This arrangement
allows a cycle that can remove proteins from the
cytoplasm and thereby protect against acidic conditions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 473
Score = 56.6 bits (137), Expect = 2e-08
Identities = 68/395 (17%), Positives = 145/395 (36%), Gaps = 44/395 (11%)
Query: 82 QLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPN 141
++ LGL LT L +G+ +G G++ L ++A +V+I + I V L
Sbjct: 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAI 63
Query: 142 LRVLNSDVK-------------------AISNQIDSLMGN-AYQKSMES----LLPIKSS 177
L ++ + + +GN AY + S P+ S
Sbjct: 64 LATKKPELDGGIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS 123
Query: 178 FLSSYPDFIAPIFVA-VITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANW 236
+ P + + V T L+ G ++A +N + T A L + + + G F +
Sbjct: 124 -GNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLF 182
Query: 237 TIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLA 296
T G + + + F+G +G + +N K ++ A
Sbjct: 183 T---ADFWGHDVPSLGSV----FSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKA 234
Query: 297 IILSLLIVFVCYFSIAVVITMIVPYYE-QNADAPFPAIF-DRLGWPVMKWLVTVGSLFAL 354
+L L V Y I ++ ++P E N P A + + L+++G + ++
Sbjct: 235 TVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISV 294
Query: 355 FTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKL-- 412
++ + ++ ++DGL + V+ P ++ L+ ++ + + L
Sbjct: 295 LGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTS 353
Query: 413 DQLVDMMSIGT---LLAYIIVAICVLLLRYSGDEV 444
++S+ L+ Y++ LL+ +
Sbjct: 354 SAYNVLVSLAVVMILVPYLLS--AAYLLKLAKVGT 386
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional.
Length = 499
Score = 56.2 bits (135), Expect = 3e-08
Identities = 45/197 (22%), Positives = 94/197 (47%), Gaps = 12/197 (6%)
Query: 251 SGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFS 310
+GGF P G+ + F F + + T E ++P+ +P AI + + + Y
Sbjct: 211 NGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVG 270
Query: 311 IAVVITMIVPYYE-QNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRIL 369
V++ M++P+ Q +PF F +LG P + ++ + L A +++ + RIL
Sbjct: 271 SVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRIL 330
Query: 370 YAMSRDGLLYERLSYVSSRTQTP---LLSTALSGVITAVM-----SAVFKLDQLVDMMSI 421
+M+ G ++ + SR P +L+T + V+ + S VF++ +++ S+
Sbjct: 331 RSMAMGGSAPSFMAKM-SRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEI--VLNFASL 387
Query: 422 GTLLAYIIVAICVLLLR 438
G + ++ + +C + LR
Sbjct: 388 GIIASWAFIIVCQMRLR 404
Score = 28.8 bits (64), Expect = 8.1
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 85 RVLGLIDLTMLGVGATLGVGVYVLAGSVARNQ-AGPSVVISFAIAAVTSLF 134
+ +G + M+ +G +G G+++ AG AR Q AGP++ + + I + S F
Sbjct: 28 KAMGNRQVQMIAIGGAIGTGLFLGAG--ARLQMAGPALALVYLICGLFSFF 76
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease;
Provisional.
Length = 469
Score = 55.9 bits (135), Expect = 3e-08
Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 3/139 (2%)
Query: 252 GGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSI 311
GG P G++G G F FVG + + TT ET++P++++P AI S+ I + ++
Sbjct: 203 GGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAIN-SIPIRIIMFYVF 261
Query: 312 AVVITMIV-PYYEQNAD-APFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRIL 369
A+++ M V P+ D +PF +F +G P ++ L + ++ F R+L
Sbjct: 262 ALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRML 321
Query: 370 YAMSRDGLLYERLSYVSSR 388
+ ++++G+ + + +S R
Sbjct: 322 FGLAQEGVAPKAFAKLSKR 340
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional.
Length = 489
Score = 53.3 bits (128), Expect = 2e-07
Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 52/337 (15%)
Query: 78 SDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPS-VVISFAIAAVTSLFSV 136
++AP L R L LTM+ +G ++G G++V +G+ +QAGP ++S+ + + F +
Sbjct: 8 TEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATI-SQAGPGGALLSYMLIGLMVYFLM 66
Query: 137 VKNPNLR----VLNSDVKAISNQIDSLMGNA------YQKSMESLLPIKSSFLSS---YP 183
L V S N ++ G A Y ++ + + ++ L +P
Sbjct: 67 TSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP 126
Query: 184 D---------FIAPIFVAVITGLLSWGASES----AKVNNVLTFANLGTVAII-VFSGLF 229
D F+ IF+ + +G +E KV V+ F +G + II +F G
Sbjct: 127 DTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAE 186
Query: 230 RLNPANWTIRREAIPPGVRGGSGGFAPF-GVNGIVTGAAKCFFGFVGFDGIATTGEETRN 288
+NWTI G +GGFA GV IV F F G + I E+ +
Sbjct: 187 PAGWSNWTI-------GDAPFAGGFAAMIGVAMIVG------FSFQGTELIGIAAGESED 233
Query: 289 PKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQN---------ADAPFPAIFDRLGW 339
P +NIP A+ + + Y ++I++I+PY + + + +PF +F G
Sbjct: 234 PAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGL 293
Query: 340 PVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDG 376
++ L A+ +A + R+LY ++ DG
Sbjct: 294 LSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDG 330
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional.
Length = 457
Score = 51.0 bits (122), Expect = 1e-06
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 212 LTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRG--GSGGFAPFGVNGIVTGAAKC 269
+F + T+ I++ +G+ + W I P G+ +GGF G G+V
Sbjct: 152 FSFFKVATIIIMIVAGIGIII---WGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMV 208
Query: 270 FFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNAD-A 328
F + G + I T E ++P+++IP AI + + V Y VI I P+ + + +
Sbjct: 209 MFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGS 268
Query: 329 PFPAIFDRLGWP----VMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSY 384
PF F +G ++ ++V SL A+ + +FG + R+L+ M+ G + S
Sbjct: 269 PFVLTFQHMGITFAASILNFVVLTASLSAINSDVFG----VGRMLHGMAEQGSAPKIFSK 324
Query: 385 VSSR 388
S R
Sbjct: 325 TSRR 328
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter.
Members of this protein family are antiporters that
exchange histidine with histamine, product of histidine
decarboxylation. A system consisting of this protein,
and a histidine decarboxylase encoded by an adjacent
gene, creates decarboxylation/antiport proton-motive
cycle that provides a transient resistance to acidic
conditions.
Length = 429
Score = 50.7 bits (121), Expect = 1e-06
Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 29/271 (10%)
Query: 180 SSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIR 239
++Y A I + L S+GA + + + L + + G F P +
Sbjct: 118 TTYGCIAAIIILWAFVFLASFGAKVAGRAQSFTAICGLAVILGVGIFGWFWFKPEMYL-- 175
Query: 240 REAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIIL 299
E I + I+ A+ +GF+G + + + NP++ +P A ++
Sbjct: 176 -EVINATGNSNF--------SAIIAAASIALWGFLGIESAVVSTGQVENPEKTVPKATVM 226
Query: 300 SLLIVFVCYFSIAVVITMIVPYYE-QNADAPFP-AIFDRLGWPVMKWLVTVGSLFALFTA 357
LLI VCY + VI I+P+ N+ APF A + + + S+ A F +
Sbjct: 227 GLLIAAVCYVASCTVIAGIIPHEVLINSAAPFADAAKYMFDNELAGNIASALSIIACFGS 286
Query: 358 MFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLD---- 413
+ G F A + GL + + + ++ P+ S + ++ M V L
Sbjct: 287 ISGWFILQSEAPRAAAEQGLFPKFFADL-NKNDVPMKSLIFTAIL---MCCVLLLTASPN 342
Query: 414 -----QLVDMMSI-GTLLAYI--IVAICVLL 436
+++ +MS+ +LL Y+ I+A+ ++L
Sbjct: 343 LAEQFEIIILMSVFASLLPYLYAIIALPIIL 373
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter.
Lowered cutoffs from 1000/500 to 800/300, promoted from
subfamily to equivalog, and put into a Genome Property
DHH 9/1/2009 [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 507
Score = 45.3 bits (107), Expect = 7e-05
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 10/182 (5%)
Query: 273 FVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSI-AVVITMIVPYYEQNADAPFP 331
++G + A+ E NP R+ PLA+IL L+I +C +I I ++P E N A
Sbjct: 207 YMGVEASASHINELENPGRDYPLAMIL-LMIAAICLDAIGGFSIAAVIPGKEINLSAGVI 265
Query: 332 AIFDRLGW---PVMKWLVTVGSLFALFTAM--FGAFFPLP-RILYAMSRDGLLYERLSYV 385
F L ++WLV V + F + ++ P R ++A ++ GLL + +
Sbjct: 266 QTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKM 325
Query: 386 SSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAY-IIVAICVLLLRYSGDEV 444
+ + P+ + G+IT++ A+ + +S +A +++ +C L + G V
Sbjct: 326 NKH-EVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFV 384
Query: 445 VV 446
++
Sbjct: 385 LI 386
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system. A
number of bacteria obtain nitrogen by biotin- and
ATP-dependent urea degradation system distinct from
urease. The two characterized proteins of this system
are the enzymes urea carboxylase and allophanate
hydrolase, but other, uncharacterized proteins co-occur
as genes encoded nearby in multiple organisms. This
family includes predicted permeases of the amino acid
permease family, likely to transport either urea or a
compound from which urea is derived. It is found so far
only Actinobacteria, whereas a number of other species
with the urea carboxylase have an adjacent ABC
transporter operon.
Length = 475
Score = 44.1 bits (104), Expect = 2e-04
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 274 VGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQN---ADAPF 330
VGF EET+NP+R P I+ +L + + + + M P A+
Sbjct: 227 VGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLP 286
Query: 331 PAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL--YERLSYVSSR 388
+ L P L+ V A+ R++++M+RDG L +LS V R
Sbjct: 287 YVLSAVLDSPWGTVLL-VDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPR 345
Query: 389 TQTPLLSTALSGVITAVM-------SAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYSG 441
T TP+L + + GV+ + SA+F L + + LAY++V + +LL R G
Sbjct: 346 TGTPILPSIVIGVLCIGILLINVGNSALFA--TLASVCIVLIYLAYLLVTVPLLLRRLRG 403
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional.
Length = 438
Score = 43.1 bits (102), Expect = 3e-04
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 272 GFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYE-QNADAPF 330
F+G + + NP+RN+P+A++ L V Y VI IVP E N+ APF
Sbjct: 201 AFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPF 260
Query: 331 PAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQ 390
F ++ P + +V + + ++ G F + ++ + + +G + S V+
Sbjct: 261 GLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVTKV-D 319
Query: 391 TPLLSTALSGVITAVMS 407
P+ + VI +++S
Sbjct: 320 APVQGMLIIVVIQSLLS 336
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter. Members
of this protein family are putrescine-ornithine
antiporter. They work together with an enzyme that
decarboxylates ornithine to putrescine. This two-gene
system has the net effect of removing a protein from the
cytosol, providing transient resistance to acid
conditions.
Length = 430
Score = 41.8 bits (98), Expect = 8e-04
Identities = 50/260 (19%), Positives = 111/260 (42%), Gaps = 28/260 (10%)
Query: 186 IAPIFVAVITGLLSW--------GASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWT 237
++P+ +A+ T + W GA + ++++ + + V I G F + +
Sbjct: 116 LSPVQIALATIGVLWIATVLNFGGARITGQISSFTVWGVIIPVVGISIIGWFWFSGTLY- 174
Query: 238 IRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAI 297
+ A F +G+ + + + F+G + + NPK+N+P+A+
Sbjct: 175 ---------ADSWNPHHAGF-FSGVGSSISITLWAFLGLESACANTDVVENPKKNVPIAV 224
Query: 298 ILSLLIVFVCYFSIAVVITMIVPYYE-QNADAPFPAIFDRLGWPVMKWLVTVGSLFALFT 356
+ + V Y VI IVP E N++APF F ++ P + +V + + F
Sbjct: 225 LGGTIGAAVMYIISTNVIAGIVPNMELANSNAPFGLAFSQMFNPTVGKIVMGLMVISCFG 284
Query: 357 AMFGAFFPLPRILYAMSRDGL---LYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLD 413
++ G F + + + + +G ++ + + L+ T L ++ A+M+ L
Sbjct: 285 SLLGWQFTIAEVFRSSADEGYFPKIFSKTIGNGTPLIGMLIITILQSLL-ALMTISPSLS 343
Query: 414 Q----LVDMMSIGTLLAYII 429
+ LV++ + ++ YI+
Sbjct: 344 KQFTILVNLAVVTNIIPYIL 363
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional.
Length = 445
Score = 40.2 bits (94), Expect = 0.003
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 273 FVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYE-QNADAPFP 331
F+G + + +NPKRN+P+A I +LI VCY + I ++P + + +PF
Sbjct: 204 FIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFG 263
Query: 332 -----AIFDRLGWPVMKWLVTVGSLFAL--FTAMFGAFFPLPRILYAMSRDGLLYERLSY 384
A+ D G ++ + G L +L +T + G + A + DGL +
Sbjct: 264 DAARMALGDTAG-AIVSFCAAAGCLGSLGGWTLLAG------QTAKAAADDGLFPPIFAR 316
Query: 385 VSSRTQTPLLSTALSGVITAVM-------SAVFKLDQLVDMMSIGTLLAYIIVAICVLLL 437
V+ TP+ + GV+ + +A + + + I TL+ Y+ +LLL
Sbjct: 317 VNKA-GTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLL 375
Query: 438 RY 439
+
Sbjct: 376 GH 377
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional.
Length = 435
Score = 37.8 bits (88), Expect = 0.012
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 269 CFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYE-QNAD 327
C + FVG + A + +NPKR +PLA +L + + Y + VI+ + P +
Sbjct: 196 CLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASG 255
Query: 328 APFP----AIFDRLGWPVMKWLVTVGSLFALFTAM 358
APF I P+ V+ + FA T++
Sbjct: 256 APFAISASTILGNWAAPL----VSAFTAFACLTSL 286
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 37.6 bits (88), Expect = 0.013
Identities = 60/302 (19%), Positives = 99/302 (32%), Gaps = 41/302 (13%)
Query: 151 AISNQIDSLMGNAYQKSMESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNN 210
I N + S +GN Q + L S IF V+ L G K+ +
Sbjct: 108 GIGNLLASFLGN--QFGLNPLPRKLGSL----------IFALVLAFLSWLGTLAVLKITS 155
Query: 211 VLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCF 270
+L F + + ++V + NPAN A ++
Sbjct: 156 LLVFGKVIYLVLLVVYLIPHWNPANLFALPSAS------------QSFWKYLLLAIPVFV 203
Query: 271 FGFVGFDGIATTGEETR-NPKRNIPLAIILSLLIVFVCYFSIAV---------VITMIVP 320
F F I + R N K+ + AI++ LI V Y + V I+
Sbjct: 204 FSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILA 263
Query: 321 YYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYE 380
EQN A+ + P++ + + +LFA+ T+ G + L L + +
Sbjct: 264 AKEQNISLL-SALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKP 322
Query: 381 RLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMSIGTLLAYIIVAICVLLLRYS 440
T P L AL ++ + I T+ A II A+ + R
Sbjct: 323 GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGL------IATIGAPIIPALLFIKPRKL 376
Query: 441 GD 442
Sbjct: 377 IY 378
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 37.0 bits (86), Expect = 0.034
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 44/164 (26%)
Query: 245 PGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGI---ATTGEETRNPKRNIPLAIILSL 301
PG+ G GGF F + GI FF V GI A + ++P++ IP +L++
Sbjct: 273 PGIPGPEGGF--FSLFGI-------FFPSV--TGILAGANISGDLKDPQKAIPKGTLLAI 321
Query: 302 LIVFVCYFSIAVVI--------------------TMIVPYYEQNADAPFPAIFDRL---- 337
L V Y V+ T + E + + + L
Sbjct: 322 LTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMS 381
Query: 338 ---GWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL 378
+P L+T G A ++ + PR+ A+ +D +
Sbjct: 382 LVSPFP---PLITAGIFSATLSSALASLVSAPRLFQALCKDNIY 422
>gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional.
Length = 461
Score = 35.9 bits (83), Expect = 0.050
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 252 GGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSI 311
GGF G G +T + G + I T E +NP+ + A+ L + + Y
Sbjct: 192 GGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGA 251
Query: 312 AVVITMIVPYYEQNAD-APFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILY 370
VI I P+ E ++ +PF F ++G ++ L A + + R+LY
Sbjct: 252 IFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLY 311
Query: 371 AMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAV 409
A++++ L ++ V SR P+ A+S +I V S +
Sbjct: 312 ALAKNRQLPAAMAKV-SRHGVPVAGVAVSILILLVGSCL 349
Score = 33.6 bits (77), Expect = 0.25
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 77 ASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 134
A + P+L R L + ++ +G T+GVG+++ A S + AGPSV++++ IA + F
Sbjct: 2 ADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLK-WAGPSVLLAYIIAGLFVFF 58
>gnl|CDD|224372 COG1455, CelB, Phosphotransferase system cellobiose-specific
component IIC [Carbohydrate transport and metabolism].
Length = 432
Score = 34.9 bits (81), Expect = 0.10
Identities = 45/267 (16%), Positives = 89/267 (33%), Gaps = 41/267 (15%)
Query: 130 VTSLFSVVKN-PNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFLSSYP----- 183
V S+F ++ N P L + K N ++ Y + ++ + +F +Y
Sbjct: 41 VGSIFLLINNLPFLFGADFLGKPFGNGWKGILMQVYNGTF-GIMSLLVAFGIAYSLAKSY 99
Query: 184 --DFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGT--------VAIIVFSGLFRLNP 233
D +A +++ + S + + A LG +A++ L
Sbjct: 100 GVDALAAGLLSLAAFFIVTPLSIAVVPAGAVGAAWLGGKGLFTAIIIALVTVEIYTFLVK 159
Query: 234 ANWTIRR-EAIPPGVRGGSGGFA---PFGVNGIVTGAAKCFFGFVGFDG-----IATTGE 284
N TI+ E++PP V S F P + + G +
Sbjct: 160 RNITIKMPESVPPAV---SKSFEALIPGFIILSIFGLINILLNSITGGNLITLIYTAIQA 216
Query: 285 ETRNPKRNIPLAIILSLLIVFVCYFSI---AVVITMIVPYYEQNADA---------PFPA 332
++P +I++ L+ + +F I ++V ++ P N P P
Sbjct: 217 PLFGLGDSLPGVLIIAFLVSLLWFFGIHGASIVGPIVDPILLANMLENAAAYQAGEPLPH 276
Query: 333 IFDRLGWPVMKWLVTVGSLFALFTAMF 359
I ++ G+ L A+F
Sbjct: 277 IITTPFLDSFVFIGGSGATLGLVIAIF 303
>gnl|CDD|227662 COG5368, COG5368, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 451
Score = 33.7 bits (77), Expect = 0.26
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 326 ADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLS-- 383
D PA +D W +T G+ + +FG F I + RD L+ ERLS
Sbjct: 206 TDPIDPASYDA-WTATYDWEITNGTTYLGVGPLFGHQFGHAWIDFRGIRDTLMRERLSDY 264
Query: 384 YVSSRTQT 391
+ +SR
Sbjct: 265 FENSRRAQ 272
>gnl|CDD|225469 COG2917, COG2917, Intracellular septation protein A [Cell division
and chromosome partitioning].
Length = 180
Score = 31.9 bits (73), Expect = 0.48
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 526 MFMNIYLMINLDVSTWVRFLVWLVLGMVVYFT 557
N Y+ N TWV F V+ + + + FT
Sbjct: 131 AIANEYVARNFSTDTWVNFKVFGLTPLTLIFT 162
>gnl|CDD|201566 pfam01036, Bac_rhodopsin, Bacteriorhodopsin-like protein. The
bacterial opsins are retinal-binding proteins that
provide light- dependent ion transport and sensory
functions to a family of halophilic bacteria. They are
integral membrane proteins believed to contain seven
transmembrane (TM) domains, the last of which contains
the attachment point for retinal (a conserved lysine).
This family also includes distantly related proteins
that do not contain the retinal binding lysine and so
cannot function as opsins.
Length = 208
Score = 31.9 bits (73), Expect = 0.57
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 10/110 (9%)
Query: 254 FAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAV 313
+ F V ++ F F T T R + IL I V YF++A
Sbjct: 1 WTVFSVGALLMLVGTALFVF-------TGRRLTDGEHRRLYAIPILIPGIAAVAYFTMAS 53
Query: 314 VITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFF 363
+ E F A + + W + + V L L +
Sbjct: 54 GLGWTGVNGEFEVRQVFYARY--IDWLLT-TPLLVLFLALLAGVDRRSLL 100
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate
antiporter. Members of this protein family are putative
putative glutamate/gamma-aminobutyrate antiporters. Each
member of the seed alignment is found adjacent to a
glutamate decarboxylase, which converts glutamate (Glu)
to gamma-aminobutyrate (GABA). However, the majority
belong to genome contexts with a glutaminase (converts
Gln to Glu) as well as the decarboxylase that converts
Glu to GABA. The specificity of the transporter remains
uncertain.
Length = 474
Score = 32.1 bits (73), Expect = 0.96
Identities = 42/193 (21%), Positives = 83/193 (43%), Gaps = 25/193 (12%)
Query: 266 AAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQN 325
AA F + G + A ++ NP +N P+AI+++ L + + + I I+P + +
Sbjct: 200 AASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDIS 259
Query: 326 ADAPFPAIFDR------LGW--PVMKWLVTVGSLFALFTAMFG---AFFP------LPRI 368
FD L W P++ + + +G L + T + G LP
Sbjct: 260 LTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTF 319
Query: 369 LYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMMS-IGTLLAY 427
+++G + + +V + + LS V+ VM +V Q++ ++ I L+ Y
Sbjct: 320 FQKTNKNG-MPIHIMFVQG-----IAVSVLS-VLFVVMPSVQAAFQILSQLTVILYLVMY 372
Query: 428 IIVAICVLLLRYS 440
+++ + LRYS
Sbjct: 373 LLMFASAIYLRYS 385
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 31.4 bits (71), Expect = 1.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 83 LARVLGLIDLTMLGVGATLGVGVYVLAG 110
LA+V DL ML +GA +G+G+ V G
Sbjct: 206 LAKVGSGPDLMMLIIGAIMGIGIGVAIG 233
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family.
Length = 393
Score = 31.1 bits (71), Expect = 1.4
Identities = 40/200 (20%), Positives = 67/200 (33%), Gaps = 29/200 (14%)
Query: 174 IKSSFLSSYPDFIAP-IFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLN 232
I F + AP IF + + G ++N VL F +VFSGL
Sbjct: 110 IPEMFGIPWSARAAPLIFTLLFGPFVWAGTKAVDRINRVLIFG-KIIAFALVFSGLL--- 165
Query: 233 PANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATT-----GEETR 287
I+ + + + + P+ I+ F F GF G + G +
Sbjct: 166 ---PKIKGDLL---LDALDTSYWPY----ILMALPVFFTSF-GFHGNVPSLYKYYGGNVK 214
Query: 288 NPKRNI------PLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPV 341
++ I PL + + + + +I N D A+ L P
Sbjct: 215 KVRKAILIGTAIPLVLYILWQLATLGNLPREEFAPIIAK--GGNLDTLVEALLGVLKSPS 272
Query: 342 MKWLVTVGSLFALFTAMFGA 361
+ + + S FAL T+ G
Sbjct: 273 FELALELFSFFALATSFLGV 292
>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system
protein KefB; Provisional.
Length = 601
Score = 31.2 bits (71), Expect = 1.6
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 200 WGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPAN-WTIRREAIPPGVRGGSGGFAPFG 258
WG + V+ +L F+ LG V ++ GL LNP+ W +RR G G A
Sbjct: 45 WGLGFISDVDEILHFSELGVVFLMFIIGL-ELNPSKLWQLRRSIF------GVGA-AQVL 96
Query: 259 VNGIVTGAAKCFFGF 273
++ V F
Sbjct: 97 LSAAVLAGLLMLTDF 111
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter. Members
of this protein family are the arginine/ornithine
antiporter, ArcD. This exchanger of ornithine for
arginine occurs in a system with arginine deiminase,
ornithine carbamoyltransferase, and carbamate kinase,
with together turn arginine to ornithine with the
generation of ATP and release of CO2 [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 468
Score = 31.2 bits (71), Expect = 1.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 87 LGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAV 130
LGL LT L VG+ +G G++ L +A A +V+I + I V
Sbjct: 3 LGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGV 46
>gnl|CDD|217647 pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts
as a virulence factor. In Bordetella pertussis, brkB is
essential for resistance to complement-dependent killing
by serum. This family was originally predicted to be
ribonuclease BN, but this prediction has since been
shown to be incorrect.
Length = 255
Score = 30.3 bits (69), Expect = 2.4
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 284 EETRNPKRNIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMK 343
+E R+ R L++ L+LL+ + S+ + + + L +++
Sbjct: 102 KEKRSFLRRRLLSLGLTLLLGLLLLLSLLLSVFLPSLLGFLILLLGLGLEIAVL-LQLLR 160
Query: 344 WLVTVGSLFALFTAMF 359
WL+++ LF LF ++
Sbjct: 161 WLLSLLLLFLLFALLY 176
>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type. This
model describes bacterial ribosomoal protein L19 and its
chloroplast equivalent. Putative mitochondrial L19 are
found in several species (but not Saccharomyces
cerevisiae) and score between trusted and noise cutoffs
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 113
Score = 28.8 bits (65), Expect = 2.4
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 91 DLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPN 141
DL VG T+ V V ++ G R Q VVI+ + F+V K
Sbjct: 15 DLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISY 65
>gnl|CDD|235503 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated.
Length = 742
Score = 30.8 bits (71), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 367 RILYAMSRDGLLYERLSYV-SSRT 389
RILYAMS GL + + S+R
Sbjct: 49 RILYAMSELGLTPDA-KFKKSARV 71
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 30.4 bits (69), Expect = 2.6
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 80 APQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAA------VTSL 133
PQ ++ I+++ V ++AG + A I+ + A VT+
Sbjct: 179 KPQPLKLRADIEVSCFDYEGIDAVKEALIAG---QEVATDECKITIKLIAPPQYVIVTTC 235
Query: 134 FSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQK 166
K+ + ++ + ++AI I G+ K
Sbjct: 236 SD--KDKGMEIIGAALEAIKEVIKKKGGDFKVK 266
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 30.2 bits (69), Expect = 3.0
Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 7/170 (4%)
Query: 185 FIAPIFVAVITGLLSW--GASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREA 242
+ I +AVI L + G A + + L V ++ F L ++ + A
Sbjct: 149 WTGAIILAVIVILYTVFGGLRAVAWTDVIQGVLMLIGVILLAFFALSKVGGGGLSALAAA 208
Query: 243 IPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIAT---TGEETRNPKRNIPLAIIL 299
+P + G G I+ FG + I ++ + +R + LA +L
Sbjct: 209 LPALLLSL-GPGGGPGWGTILGLFLLGGFGVLANPQIVQRFLAAKDEKTARRGLLLAGLL 267
Query: 300 SLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVG 349
LLI F+ I + + P E N D P + L P + LV G
Sbjct: 268 ILLIGFLAAL-IGLAARALFPDLEGNPDLALPTLIQELLPPGLAGLVLAG 316
>gnl|CDD|214433 MTH00148, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 117
Score = 28.7 bits (65), Expect = 3.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 511 LKFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGM 552
L F V V L P L + + + +L S ++ FL+ L+LG+
Sbjct: 65 LVFDVEIVLLFPVLQSLGSSFSVWSL-TSLFI-FLLILILGL 104
>gnl|CDD|132023 TIGR02978, phageshock_pspC, phage shock protein C. All members of
this protein family are the phage shock protein PspC.
These proteins contain a PspC domain, as do other
members of the larger family of proteins described by
pfam04024. The phage shock regulon is restricted to the
Proteobacteria and somewhat sparsely distributed there.
It is expressed, under positive control of a
sigma-54-dependent transcription factor, PspF, which
binds and is modulated by PspA. Stresses that induce the
psp regulon include phage secretin overexpression,
ethanol, heat shock, and protein export defects
[Cellular processes, Adaptations to atypical
conditions].
Length = 121
Score = 28.8 bits (65), Expect = 3.1
Identities = 13/70 (18%), Positives = 17/70 (24%), Gaps = 15/70 (21%)
Query: 333 IFDRLGWPVMKWLVTVGSLFALFTAMFGAFF-----------PLPRILYAMSRDGLLYER 381
+ D G V WLV + + AL P LY +
Sbjct: 20 LADYFGVEV--WLVRILVVSALLFGGGFFVLVAYIALWLLLDKKPINLYEDDDVKSKPWQ 77
Query: 382 LSYVSSRTQT 391
S Q
Sbjct: 78 --AGQSPRQA 85
>gnl|CDD|234704 PRK00259, PRK00259, intracellular septation protein A; Reviewed.
Length = 179
Score = 29.0 bits (66), Expect = 4.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 526 MFMNIYLMINLDVSTWVRFLVWLVLGMVVYFT 557
+N+Y+ N TWV F V+ + G+ + FT
Sbjct: 131 GLLNLYVARNFSTDTWVNFKVFGLTGLTLVFT 162
>gnl|CDD|235888 PRK06928, PRK06928, pyrroline-5-carboxylate reductase; Reviewed.
Length = 277
Score = 29.4 bits (66), Expect = 5.0
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 169 ESLLPIKSSFLSSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIV---- 224
E + I S+ SS P FIA IF + + + L FA GT ++V
Sbjct: 162 EENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALAGTGKLLVEEDY 221
Query: 225 -FSGL 228
FSG
Sbjct: 222 TFSGT 226
>gnl|CDD|165533 PHA03276, PHA03276, envelope glycoprotein K; Provisional.
Length = 337
Score = 29.5 bits (66), Expect = 5.1
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 45/137 (32%)
Query: 193 VITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRREAIPPGV----- 247
V T ++ WGA +T+ + F L + +R + PPG
Sbjct: 232 VSTAIIPWGAC-------AITYPLFLNITTWCFVSAILLAELYFVLRGGSAPPGAEKGPR 284
Query: 248 RGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSLLIVFVC 307
GG A GV G +C +IILS + V +C
Sbjct: 285 PPRRGGLA--GVCG------RC-------------------------CSIILSGIAVRLC 311
Query: 308 YFSIAVVITMIVPYYEQ 324
Y ++ V+ ++ YEQ
Sbjct: 312 YVAVVAVVVVVAFRYEQ 328
>gnl|CDD|216181 pfam00902, TatC, Sec-independent protein translocase protein
(TatC). The bacterial Tat system has a remarkable
ability to transport folded proteins even enzyme
complexes across the cytoplasmic membrane. It is
structurally and mechanistically similar to the Delta
pH-driven thylakoidal protein import pathway. A
functional Tat system or Delta pH-dependent pathway
requires three integral membrane proteins: TatA/Tha4,
TatB/Hcf106 and TatC/cpTatC. The TatC protein is
essential for the function of both pathways. It might be
involved in twin-arginine signal peptide recognition,
protein translocation and proton translocation. Sequence
analysis predicts that TatC contains six transmembrane
helices (TMHs), and experimental data confirmed that N-
and C-termini of TatC or cpTatC are exposed to the
cytoplasmic or stromal face of the membrane. The
cytoplasmic N-terminus and the first cytoplasmic loop
region of the Escherichia coli TatC protein are
essential for protein export. At least two TatC
molecules co-exist within each Tat translocon.
Length = 212
Score = 29.0 bits (66), Expect = 5.2
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 286 TRNPKRNI-PLAIILSLLIVFVCYFSIAVVITMIVPY---YEQNADAPFPAIFDRLGWPV 341
+N +R + P LL + F+ VV+ + + + + P P+I + L
Sbjct: 91 YKNERRFLLPFVFASFLLFLLGAAFAYFVVLPIALKFLLGFGPEGIEPQPSISEYL---- 146
Query: 342 MKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL 378
S FG F LP IL +++ G++
Sbjct: 147 --------SFVLRLLLAFGLLFELPVILVLLAKLGIV 175
>gnl|CDD|220665 pfam10268, Tmemb_161AB, Predicted transmembrane protein 161AB.
Transmemb_161AB is a family of conserved proteins found
from worms to humans. Members are putative transmembrane
proteins but otherwise the function is not known.
Length = 486
Score = 29.3 bits (66), Expect = 5.9
Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 32/165 (19%)
Query: 300 SLLIVFVCYFSIAVVITMIVP--YYEQNADAPFPAIFDRL-------GW----PVMKWLV 346
S+ I F + + +I +IV Y E + + + G P K +V
Sbjct: 168 SVCITFGFLYLLIAMIVLIVRERYLEFGLEPGYASFSTNAEDFLEKQGLESSGPASKLVV 227
Query: 347 TVGSLFALFTAMFGAFFPLPRILYA--------MSRDGLLYERLSYVSSRTQTPLLSTAL 398
A+F ++ GA P + A M D + + L +VS PL L
Sbjct: 228 KFF--LAVFCSLLGALLTFPGLRLAQMHLDALKMCADRPMLQLLLHVS--FLLPLFIVVL 283
Query: 399 -SGVITA--VMSAVFKLDQLVDMMS---IGTLLAYIIVAICVLLL 437
I + + F V +MS TL ++IV +CVL
Sbjct: 284 WIKPIARDYLTNPPFGKMS-VPLMSLSAFDTLRLWLIVVLCVLRF 327
>gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This group contains the archeal
members of the DHOase family.
Length = 361
Score = 29.2 bits (66), Expect = 6.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 392 PLLSTALSGVITAVMSAVFKLDQLVDMMSIG 422
P + TAL ++T V + L ++V + S
Sbjct: 269 PGVETALPLMLTLVNKGILSLSRVVRLTSHN 299
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase.
Length = 322
Score = 29.1 bits (65), Expect = 6.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 232 NPANWTIRREAIPPGVRGGSGGFAPFGVNGI-----VTGAAK 268
NPAN I E P + G+GG V+GI +TGA K
Sbjct: 150 NPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGK 191
>gnl|CDD|165308 PHA03007, PHA03007, hypothetical protein; Provisional.
Length = 540
Score = 29.1 bits (65), Expect = 6.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 14 NIINLDHPRKNTANQTQSMSRLRNLYEALSRKKIDVGDDDV 54
NIINL RK + S L N+YEAL K I+ DD+
Sbjct: 491 NIINL---RKQYMEFIKKKSNLINIYEALINKDIEKITDDI 528
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 29.2 bits (66), Expect = 7.3
Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 20/129 (15%)
Query: 207 KVNNVLTFANLGTVA--IIVFSGLFRLNPANWT-----IRREAIPPGVRGGSGGFAPFGV 259
+V+ + TV ++ SG ++ +N T + + A+ G G F
Sbjct: 53 VPGDVVLVKSGETVPADGVLLSGSCFVDESNLTGESNPVLKTALKETQSGTITGDLVFAG 112
Query: 260 NGIVTGAAKCFFGFVGFDGIAT----------TGEETRNPKRNIPLAIILSLLIVFVCYF 309
+ G V GI T TG ETR P ++ + + I+F+
Sbjct: 113 TYVFGGT---LIVVVTPTGILTTVGRIAVVVKTGFETRTPLQSKRDRLENFIFILFLLLL 169
Query: 310 SIAVVITMI 318
++AV + +
Sbjct: 170 ALAVFLYLF 178
>gnl|CDD|119322 cd06580, TM_PBP1_transp_TpRbsC_like, Transmembrane subunit (TM) of
Treponema pallidum (Tp) RbsC-1, RbsC-2 and related
proteins. This is a functionally uncharacterized
subgroup of TMs which belong to a larger group of TMs of
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporters, which are mainly involved
in the uptake of branched-chain amino acids (AAs) or in
the uptake of monosaccharides including ribose,
galactose, and arabinose, and which generally bind type
1 PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP, which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction.
Length = 234
Score = 28.6 bits (65), Expect = 7.8
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 393 LLSTALSGVITAVMSAVFKLDQLV----------DMMSIGTLLAYIIVAICVLLLRYS 440
L+ AL ++ A++ A +++++ + S LLA ++V + LLL +
Sbjct: 58 ALAGALWALLPALLKAKLGVNEVISGLMLNYIALGLTSYLLLLALLLVILVWLLLYRT 115
>gnl|CDD|107293 cd06298, PBP1_CcpA_like, Ligand-binding domain of the catabolite
control protein A (CcpA), which functions as the major
transcriptional regulator of carbon catabolite
repression/regulation. Ligand-binding domain of the
catabolite control protein A (CcpA), which functions as
the major transcriptional regulator of carbon catabolite
repression/regulation (CCR), a process in which enzymes
necessary for the metabolism of alternative sugars are
inhibited in the presence of glucose. In gram-positive
bacteria, CCR is controlled by HPr, a
phosphoenolpyruvate:sugar phsophotrasnferase system
(PTS) and a transcriptional regulator CcpA. Moreover,
CcpA can regulate sporulation and antibiotic resistance
as well as play a role in virulence development of
certain pathogens such as the group A streptococcus. The
ligand binding domain of CcpA is a member of the
LacI-GalR family of bacterial transcription regulators.
Length = 268
Score = 28.7 bits (65), Expect = 8.0
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 106 YVLAGSVARNQAGPSVVISFAIAAVTSLFSVVKNPNLRV--LNSDVKAISNQIDSLMGNA 163
VLAGSV + PSV I + AA + ++KN + ++ ++ ++ N + L G
Sbjct: 81 VVLAGSVDEDNELPSVNIDYKKAAFEATELLIKNGHKKIAFISGPLEDSINGDERLAG-- 138
Query: 164 YQKSME 169
Y++++
Sbjct: 139 YKEALS 144
>gnl|CDD|216153 pfam00854, PTR2, POT family. The POT (proton-dependent
oligopeptide transport) family all appear to be proton
dependent transporters.
Length = 372
Score = 28.8 bits (65), Expect = 8.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 308 YFSI---AVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFF 363
YFSI +++ T+I PY +QN G+P+ L VG L AL + G+
Sbjct: 77 YFSINAGSLIATIITPYLQQNV-----------GYPLGFGLPAVGMLLALLVFLLGSRR 124
>gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease
component [Defense mechanisms].
Length = 286
Score = 28.7 bits (64), Expect = 8.8
Identities = 20/142 (14%), Positives = 51/142 (35%), Gaps = 8/142 (5%)
Query: 302 LIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGA 361
++V IA ++ +I+ P + +L + L + +F
Sbjct: 44 VLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSG 103
Query: 362 FFPLPRILYAMSRDGLLYERLS--------YVSSRTQTPLLSTALSGVITAVMSAVFKLD 413
F L+ G L L + ++++ ++G++ V++ + +
Sbjct: 104 IFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP 163
Query: 414 QLVDMMSIGTLLAYIIVAICVL 435
L ++ + LL +++A L
Sbjct: 164 FLGSLLLLLLLLLLLLLATVAL 185
>gnl|CDD|233144 TIGR00835, agcS, amino acid carrier protein. The Alanine or
Glycine: Cation Symporter (AGCS) Family (TC 2.A.25)
Members of the AGCS family transport alanine and/or
glycine in symport with Na+ and or H+.
Length = 425
Score = 28.8 bits (65), Expect = 9.5
Identities = 49/273 (17%), Positives = 90/273 (32%), Gaps = 39/273 (14%)
Query: 183 PDFIAPIFVAVITGLLSWGASES-AKVNNVLT--FA--NLGTVAIIVFSGLFRLNPANWT 237
P + I + V+T L+ +G + AK+++V+ A + I+ + +L
Sbjct: 165 PKLVTGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISL 224
Query: 238 IRREAI-PPGVRGGSGG--FAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIP 294
I R A GG G A + G+ G G +G IA + +P R
Sbjct: 225 IFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAG-MGSAPIAAAAAQVSHPVRQG- 282
Query: 295 LAIILSLLIVFVCYFSIAVVITMIVPYYEQ-NADAPFPAI------FDRLGWPVMKWLVT 347
++ +L VF+ + +++ N V
Sbjct: 283 ---LVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVA 339
Query: 348 VGSLFALFTAMFGAFFPLPR-ILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVM 406
V F+ + G ++ + + + RL +++ AV
Sbjct: 340 VALFLFAFSTIIGWYYYGEKNAEFLKGNKKVKLYRLVFLA-----------------AVF 382
Query: 407 SAVFKLDQLV-DMMSIGTLLAYIIVAICVLLLR 438
F LV ++ + L I I +LLLR
Sbjct: 383 VGAFLSLDLVWNLADLSMGLMAIPNLIAILLLR 415
>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
A system-associated. Members of this protein family
occur, one to three members per genome, in the same
species of Euryarchaeota as contain the predicted
protein-sorting enzyme archaeosortase (TIGR04125) and
its cognate protein-sorting signal PGF-CTERM
(TIGR04126).
Length = 815
Score = 28.8 bits (65), Expect = 9.6
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 12/118 (10%)
Query: 271 FGFVGFDGIATTGEETRNPKRNIPLAII----LSLLIVFVCYFSIAVVITMIVPYYEQNA 326
G V G++ E P+ P A+ L +L++ + + +I + ++
Sbjct: 280 LGAVLLAGLSRFWERKDLPRYYYPAAVAGLAALGILVLALALPDLFSLINNGLRFFFGGG 339
Query: 327 DAPF------PAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLPRILYAMSRDGLL 378
P + + G A+ G L R L + L
Sbjct: 340 GTALTIAEAQPLFSTGGEFSLAPAWSNFG--LGFLLALAGLALLLYRPLRKYRPEELF 395
>gnl|CDD|143497 cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding
TIM barrel domain of Type III PLP-Dependent Enzymes,
Yggs-like proteins. This subfamily contains mainly
uncharacterized proteobacterial proteins with similarity
to the hypothetical Escherichia coli protein YggS, a
homolog of yeast YBL036c, which is homologous to a
Pseudomonas aeruginosa gene that is co-transcribed with
a known proline biosynthetic gene. Like yeast YBL036c,
Yggs is a single domain monomeric protein with a typical
TIM-barrel fold. Its structure, which shows a
covalently-bound PLP cofactor, is similar to the
N-terminal domain of the fold type III PLP-dependent
enzymes, bacterial alanine racemase and eukaryotic
ornithine decarboxylase, which are two-domain dimeric
proteins. YggS has not been characterized extensively
and its biological function is still unkonwn.
Length = 224
Score = 28.3 bits (64), Expect = 9.9
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 8/48 (16%)
Query: 20 HPRKNTANQTQSMSRLRNLYEALSRK--KIDV------GDDDVSIAEG 59
P + A Q + RLR L++ L ++ +D GD + +IA G
Sbjct: 164 APTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGMSGDLEAAIAAG 211
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,867,560
Number of extensions: 2927840
Number of successful extensions: 4039
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3954
Number of HSP's successfully gapped: 232
Length of query: 568
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 466
Effective length of database: 6,413,494
Effective search space: 2988688204
Effective search space used: 2988688204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)