RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6064
(568 letters)
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 244 bits (625), Expect = 5e-75
Identities = 52/260 (20%), Positives = 108/260 (41%), Gaps = 18/260 (6%)
Query: 182 YPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWTIRRE 241
VA T L +G+ + + L + + +F+GL ++P+
Sbjct: 124 NIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIP--- 180
Query: 242 AIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAIILSL 301
AP V+G++ +A F ++GF I E NPK+N+P AI +S+
Sbjct: 181 -----------DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229
Query: 302 LIVFVCYFSIAVVITMIVPYYE--QNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMF 359
LIV Y +A+ +P E + ++ + L+++G+LF++ +AM
Sbjct: 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMN 289
Query: 360 GAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAVFKLDQLVDMM 419
+ + Y++++DG L E T ++ + + + +F ++ + +
Sbjct: 290 ATIYGGANVAYSLAKDGELPEFFERKVWFKSTE--GLYITSALGVLFALLFNMEGVASIT 347
Query: 420 SIGTLLAYIIVAICVLLLRY 439
S ++ Y+ V + +L
Sbjct: 348 SAVFMVIYLFVILSHYILID 367
Score = 74.3 bits (183), Expect = 3e-14
Identities = 5/57 (8%), Positives = 21/57 (36%)
Query: 512 KFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVYFTYSIDHSKQKAK 568
+ ++ I L +F+ + + ++ +G++++ +K+
Sbjct: 372 RKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFS 428
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 198 bits (505), Expect = 1e-57
Identities = 72/394 (18%), Positives = 137/394 (34%), Gaps = 43/394 (10%)
Query: 79 DAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVVK 138
+ A +GLI +T++ GA +G GV++L ++A G + + + + +L +
Sbjct: 2 SSDADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMV 59
Query: 139 NPNLRVLNSDVKAISNQIDSLMGN------------AYQKSMESLLPIKSSFLSSY-PDF 185
+ L+ G A +++ I +LS + P
Sbjct: 60 YAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL 119
Query: 186 IAPIFVAV--------ITGLLSWGASESAKVNNVLTFANLGTVAIIVFSGLFRLNPANWT 237
P + + L G +V V T L + I G F +
Sbjct: 120 KDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYM 179
Query: 238 IRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNIPLAI 297
A G G I + + F+G + + +NPKRN+P+A
Sbjct: 180 ---AAWNVSGLGTFG--------AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228
Query: 298 ILSLLIVFVCYFSIAVVITMIVPYYE-QNADAPFPAIFDRLGWPVMKWLVTVGSLFALFT 356
I +LI VCY I ++P + + +PF +V+ +
Sbjct: 229 IGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLG 288
Query: 357 AMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVM-------SAV 409
++ G + A + DGL + V ++ TP+ + G++ + +A
Sbjct: 289 SLGGWTLLAGQTAKAAADDGLFPPIFARV-NKAGTPVAGLIIVGILMTIFQLSSISPNAT 347
Query: 410 FKLDQLVDMMSIGTLLAYIIVAICVLLLRYSGDE 443
+ + + I TL+ Y+ +LLL +
Sbjct: 348 KEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFG 381
Score = 45.8 bits (109), Expect = 2e-05
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 512 KFKVPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVWLVLGMVVY-FTYSIDHSK 564
P + ++ I+ ++ + V L++ +Y Y+ H
Sbjct: 381 GKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKN 434
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 168 bits (427), Expect = 5e-46
Identities = 60/406 (14%), Positives = 122/406 (30%), Gaps = 50/406 (12%)
Query: 81 PQLARVLGLIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVIS---------FAIAAVT 131
+ LT+LG A V + +G S+V +
Sbjct: 2 ATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCA 61
Query: 132 SLFSVVKNPNLRVLNSDVKA--------------ISNQIDSLMGNAYQ--KSMESLLPIK 175
+ + V + + V + Y ++ +L
Sbjct: 62 AEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWP 121
Query: 176 SSFLSSYPDFIAPI-FVAVITGLLSWGASESAKVNNVLTFANLG-TVAIIVFSGLFRLNP 233
+ IA + + + G +A++ V FA + I++ L+
Sbjct: 122 ALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHS 181
Query: 234 ANWTIRREAIPPGVRGGSGGFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRNI 293
AI F F G + ++G + AT E NP R+
Sbjct: 182 GAPV----AIEMD---SKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDY 234
Query: 294 PLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRL------GWPVMKWLVT 347
PLA++L ++ + I M++P E N A F L +++
Sbjct: 235 PLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVIS 294
Query: 348 VGSLFALFTAMFGAFFPLPRILYAMSRDGLLYERLSYVSSRTQTPLLSTALSGVITAVMS 407
L + + R +Y ++ LL + + ++ P+ VIT++
Sbjct: 295 ALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKM-NKNGVPVTLVISQLVITSIAL 353
Query: 408 AVFKL---------DQLVDMMSIGTLLAYIIVAICVLLLRYSGDEV 444
+ + + + L AY ++ I ++L ++
Sbjct: 354 IILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDL 399
Score = 27.9 bits (62), Expect = 9.7
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 19/76 (25%)
Query: 512 KFKVPWVP----LIPCLSMFMNIYLMI---------------NLDVSTWVRFLVWLVLGM 552
F +P ++ + + +I I V FLV L L
Sbjct: 402 TFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPF 461
Query: 553 VVYFTYSIDHSKQKAK 568
++Y +
Sbjct: 462 ILYAVHDRKGKANTGV 477
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 4e-07
Identities = 82/534 (15%), Positives = 152/534 (28%), Gaps = 180/534 (33%)
Query: 120 SVVISFAIAAVTSLFSVVKNPNLRVLNSD-VKAISNQIDSLMGNAYQKSMESLLPIKSSF 178
S+ + T+ F L K + + + + L+ F
Sbjct: 15 SLEHVLLVP--TASF-----FIASQLQEQFNKILPEPTEGFAADDEPTTPAELV---GKF 64
Query: 179 LSSYPDFIAPI--------FVAVITGLLSWGASESA--KVNNVLTFANLGTVAIIVFSGL 228
L +++ + F V+ L E+ + N++ A + L
Sbjct: 65 LG----YVSSLVEPSKVGQFDQVLNLCL--TEFENCYLEGNDIHALA----------AKL 108
Query: 229 FRLNPANWTIRREAI------------PPGVRGGSGGFAPFGVNGIVTGAAKCF--FGFV 274
+ N +E I P + S A F + G A+ FG
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS---ALF--RAVGEGNAQLVAIFG-- 161
Query: 275 GFDGIATTG-EETRNPKRNIPLAIILSLLIVFVCYFS-----IAVVITMIVPYYEQNADA 328
G G EE L ++ Y I + DA
Sbjct: 162 GQ-GNTDDYFEE---------------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 329 P--FPAIFDRLGWPVMKWL---VTVGSLFALFTAMFGAFFPLPRI-LYAMSRDGLLYERL 382
F + +++WL L + PL I + ++ Y
Sbjct: 206 EKVFTQGLN-----ILEWLENPSNTPDKDYLLSIPIS--CPL--IGVIQLAH----Y--- 249
Query: 383 SYVSSRTQ--TPL--------LSTALSGVITAVMSAV------FKLDQLVDMMS----IG 422
V+++ TP + G++TAV A F + ++ IG
Sbjct: 250 -VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFFIG 307
Query: 423 T--LLAYIIVAICVLLLRYSGDE--------VVVETCDSEVDFVHVDTLANTYKDMTRED 472
AY ++ +L S + + + E +V+ N++ ++
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-NSHLPAGKQV 366
Query: 473 SASTELTN------VT----DKSQLNIQRDKNQSSNQQQYLSGQNTGRLKF---KVPWVP 519
S L N V+ LN+ K ++ SG + R+ F K
Sbjct: 367 EIS--LVNGAKNLVVSGPPQSLYGLNLTLRKAKAP------SGLDQSRIPFSERK----- 413
Query: 520 LIPCLSM-FMNI-------YL-----MINLDVSTWVRFLVWLV--LGMVVYFTY 558
S F+ + L +IN D+ + + + + VY T+
Sbjct: 414 --LKFSNRFLPVASPFHSHLLVPASDLINKDL--VKNNVSFNAKDIQIPVYDTF 463
Score = 50.8 bits (121), Expect = 1e-06
Identities = 60/308 (19%), Positives = 96/308 (31%), Gaps = 86/308 (27%)
Query: 74 LERASDAPQ---LARV---LGLIDLTMLG--------VGATLGVGVYVLAGSVARNQAGP 119
LE S+ P L + LI + L +G T G L G+ +Q
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-- 276
Query: 120 SVVISFAIAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSLMGNAYQKSMESLLPIKSSFL 179
+V + AIA S S + KAI + +G ++ P S
Sbjct: 277 -LVTAVAIAETDSWESFFVS--------VRKAI--TVLFFIGVRCYEAY----PNTSLPP 321
Query: 180 SSYPDFI-------APIFVAVITGLLSWGASES--AKVNNVLTFANLGTVAII------V 224
S D + +P+ I+ L+ + K N+ L ++++ V
Sbjct: 322 SILEDSLENNEGVPSPML--SISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 225 FSG----LFRLNPANWTIRREAIPPGV---------RG--GSGGF----APF-------G 258
SG L+ LN +R+ P G+ R S F +PF
Sbjct: 379 VSGPPQSLYGLNLT---LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 259 VNGIVTGAAKCFFGFVGFD-GIA----TTGEETRNPKRNIPLAIILSLLIVFVCYFSIAV 313
+ I K F D I G + R +I I+ +I +
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV-DCIIRLPVKWETTT 494
Query: 314 V--ITMIV 319
T I+
Sbjct: 495 QFKATHIL 502
Score = 39.3 bits (91), Expect = 0.004
Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 68/206 (33%)
Query: 94 MLGVGATLGVGVYVLAGSVAR-NQAGPS---VVISFAIAA----VT----SLFSV----- 136
ML + + + V + N P+ V IS A V+ SL+ +
Sbjct: 338 MLSI---SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 137 -VKNPNL----RVLNSDVK-AISNQ---ID-----SLMGNAYQKSMESL----------- 171
K P+ R+ S+ K SN+ + L+ A + L
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD 454
Query: 172 --LPIKSSF----LSSYPDFIAPIFVAVITGL-LSWGASESAKVNNVLTF--------AN 216
+P+ +F L I+ V I L + W + K ++L F
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 217 L------GT-VAIIVFSGLFRLNPAN 235
L GT V +IV +G +NP +
Sbjct: 515 LTHRNKDGTGVRVIV-AGTLDINPDD 539
Score = 35.8 bits (82), Expect = 0.048
Identities = 26/212 (12%), Positives = 57/212 (26%), Gaps = 80/212 (37%)
Query: 16 INLDHPR---KNTANQTQ------SMSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAG-- 64
+ T TQ + +E L K + D AG
Sbjct: 1717 YTFRSEKGLLSATQF-TQPALTLMEKA----AFEDLKSKGLIPADATF--------AGHS 1763
Query: 65 -G------ADGVGKLPLERASDAPQLARV-------------LGLIDLTMLGV-----GA 99
G + + +E ++ LG + M+ + A
Sbjct: 1764 LGEYAALASLA-DVMSIE---SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 100 TLGV-GVYVLAGSVAR-----------NQAGPSVVISFAIAAVTSLFSVVKNPNLRVLNS 147
+ + + V + N V + + A+ ++ +V+ +++
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLN--FIKLQKI 1877
Query: 148 DVKAISNQIDSLMGNAYQKSMESLLPIKSSFL 179
D+ + QKS+ SL ++
Sbjct: 1878 DIIEL------------QKSL-SLEEVEGHLF 1896
Score = 31.2 bits (70), Expect = 1.3
Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 39/124 (31%)
Query: 8 KSHLTQNIINLDH-----PRKNTAN----QTQSMSRLRNLYEALSRKKID---VGDDDVS 55
L +N ++ + P +T + + S S + + + R + +
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 56 --IAEGKNPAGGADGVGKLPLERASDAPQLARVLGLIDLTMLGVGATLGVGVYVLAGSVA 113
+ G P GGA G+G L R D G GV V ++AG++
Sbjct: 500 HILDFG--P-GGASGLGVL-THRNKD------------------GT--GVRV-IVAGTLD 534
Query: 114 RNQA 117
N
Sbjct: 535 INPD 538
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 3e-06
Identities = 49/339 (14%), Positives = 95/339 (28%), Gaps = 111/339 (32%)
Query: 38 LYEALSRKKIDVGDDDVSIAEGKNPA-GGADGVGKLPLERASDAPQLARVL-------GL 89
L + ++ E ++ K + R +L + L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 90 IDLTMLGVGATLGVGVYVLAGSVARN----QAGPSVV--ISFA--------IAAVTSLFS 135
+ +LG G T +A V + + ++ + + L
Sbjct: 154 LIDGVLGSGKT------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 136 VVKNPNLRVLNSDVKAISNQIDS--------LMGNAYQKSMESLL--------PIKSSFL 179
+ +PN + I +I S L Y+ LL ++F
Sbjct: 208 QI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQNAKAWNAF- 262
Query: 180 SSYPDFIAPIFVAVITGLLSWGASESAKVNNVLTFANLGTVAIIVFS---------GLFR 230
+ I ++T + +V + L+ A +++ S L
Sbjct: 263 ----NLSCKI---LLT-------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL- 307
Query: 231 LNPANWT-IRREAIPPGVRGGSGGFAPFGVNGIVTGAAKC--------FFGFVGFDGIAT 281
+ R + +P V + P ++ I A + V D + T
Sbjct: 308 ---LKYLDCRPQDLPREVLTTN----PRRLSII---AESIRDGLATWDNWKHVNCDKLTT 357
Query: 282 TGE---------ETRN--------PKR-NIPLAIILSLL 302
E E R P +IP I+LSL+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLI 395
Score = 38.3 bits (88), Expect = 0.008
Identities = 72/490 (14%), Positives = 135/490 (27%), Gaps = 168/490 (34%)
Query: 143 RVLNS-DVKAISNQIDSLMG-------------NAYQKSMESLLPIKSSFLSSY------ 182
+L+ ++ I D++ G QK +E +L I FL S
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 183 -PDFIAPIFVAVITGLLSWGASESAKVNNVL---TFANLGTVAIIVFSGLFRLNPANWTI 238
P + +++ L + ++ NV + L L L PA +
Sbjct: 104 QPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKLRQ-------ALLELRPAKNVL 154
Query: 239 RREAIPPGVRGGSGGFAPFGVNGIVTGAA-----KCFFGFVGFDGI--ATTGEETRNPKR 291
+ G G G + +C F I
Sbjct: 155 --------IDGVLG----SGKTWVALDVCLSYKVQCKMDF----KIFWLNLKNCNS--PE 196
Query: 292 NIPLAIILSLLIVFVCYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSL 351
+ L ++ L Y I P + +D I R+ + L
Sbjct: 197 TV-LEMLQKL-----LY--------QIDPNWTSRSDHSSN-IKLRIHS-IQAELRR---- 236
Query: 352 FALFTAMFGAFFPLPRILYAMS--RDGLLYERLSYVSSRTQTPLLSTALSGVITAVMSAV 409
L + P L + ++ + + +S + LL+T V + +A
Sbjct: 237 --LLKSK-----PYENCLLVLLNVQNAKAWNAFN-LSCKI---LLTTRFKQVTDFLSAAT 285
Query: 410 FK---LDQLVDMMSIGTLLAYIIVAICVLLLRYSG---DEVVVETCD---------SEVD 454
LD ++ + + LLL+Y ++ E +E
Sbjct: 286 TTHISLDHHSMTLTPDEVKS--------LLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 455 FVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQNTGRLKFK 514
+ T + +K + + +LT + + S LN+ ++ +
Sbjct: 338 RDGLATW-DNWKHVNCD-----KLTTIIESS-LNVLEPAEY---RKMFDR---------- 377
Query: 515 VPWVPLIPCLSMFMNIYLMINLDVSTWVRFLVW-------------------LVLGMVVY 555
LS+F + + T + L+W LV
Sbjct: 378 ---------LSVFPP-----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 556 FTYSIDHSKQ 565
T SI S
Sbjct: 424 STISI-PSIY 432
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO
trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo
sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A*
3leo_A*
Length = 156
Score = 31.2 bits (70), Expect = 0.39
Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 292 NIPLAIILSLLIVFVCYFSIAVVITM----IVPYYEQNADAPFPAIFDRLGW-----PVM 342
+ L ++LL V + + VI+ V F ++ P+
Sbjct: 4 EVALLAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYFPLF 63
Query: 343 KWLVTVGSLF--ALFTAMFGAFFPLPRILYAM--SRDGLLYERLSYVSSRTQTPLLSTAL 398
+ V +F A+ G + R+ Y +R L Y S+R L++ A
Sbjct: 64 LATLWVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVALAA 123
Query: 399 SGVITAVMSAVFKLDQL 415
G++ + A + L
Sbjct: 124 LGLLAHFLPAALRAALL 140
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 29.9 bits (68), Expect = 2.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 338 GWPVMKWLVTVGSLFALFTAMFGAFFPLPRI 368
++ +T G+ +F+AMFG PL +
Sbjct: 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKAL 301
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP
phosphorylase (H+ transporting), ATP synthesis, F1FO ATP
synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos
taurus}
Length = 72
Score = 27.0 bits (60), Expect = 3.5
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 88 GLIDLTMLGVGATLGVGVYVLAGSVARN-----QAGPSVVISFAIAAVTSLFSVV 137
G + + G GA +G L ARN Q ++ FA++ LF ++
Sbjct: 11 GAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLM 65
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 29.1 bits (66), Expect = 4.6
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 338 GWPVMKWLVTVGSLFALFTAMFGAFFPLPRI 368
+P + +T G++ +F++M PL +
Sbjct: 271 SFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 29.1 bits (66), Expect = 5.3
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 66 ADGVGKLPLERASDAPQLARVLGLI 90
++GV + L + S A RV I
Sbjct: 227 SEGVVAVLLTKKSLA---RRVYATI 248
>2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI,
protein structure initiative, MID center for structural
genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas
gingivalis}
Length = 452
Score = 28.7 bits (65), Expect = 5.7
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 392 PLLSTALSGVITAVMSAVFKLDQLVDMMSIG 422
PL+ +L ++ +F ++++V +
Sbjct: 337 PLVQHSLLALLELCNQGIFSIEEIVSKTAHI 367
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase,
oligomycin, membr protein-antibiotic complex; HET: FME
EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J*
2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Length = 76
Score = 26.2 bits (58), Expect = 7.1
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 88 GLIDLTMLGVGATLGVGVYVLAGSVARN-----QAGPSVVISFAIAAVTSLFSVV 137
G+ + +LG G + + L V+RN P ++ FA++ T LF ++
Sbjct: 13 GISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLM 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,445,950
Number of extensions: 532574
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 42
Length of query: 568
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 469
Effective length of database: 3,937,614
Effective search space: 1846740966
Effective search space used: 1846740966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.0 bits)