RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6064
(568 letters)
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter
MsbA, N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 319
Score = 29.9 bits (65), Expect = 0.85
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 317 MIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPL 365
+ P + A + +P + +T G++ +F++M PL
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPL 289
>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii
[TaxId: 329]}
Length = 330
Score = 28.8 bits (63), Expect = 1.8
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 392 PLLSTALSGVITAVMSAVFKLDQLVDMMSIG 422
P + L V V L Q V++++
Sbjct: 287 PGVEERLMMVYQGVNEGRISLTQFVELVATR 317
>d1gnla_ e.26.1.1 (A:) Hybrid cluster protein (prismane protein)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 543
Score = 29.0 bits (65), Expect = 1.8
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 239 RREAIPPG-VRGGSG-----GFAPFGVNGIVTGAAKCFFGFVGFDGIATTGEETRNPKRN 292
I G + GG A ++ + +GA K F G DG A + +
Sbjct: 356 APTEIESGEIIGGFAHNQVLALADKVIDAVKSGAIKKFVVMAGCDGRAKSRSYYTDFAEG 415
Query: 293 IP 294
+P
Sbjct: 416 LP 417
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex
aeolicus [TaxId: 63363]}
Length = 310
Score = 28.8 bits (63), Expect = 1.9
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 392 PLLSTALSGVITAVMSAVFKLDQLVDMMSIG 422
L TAL + + L +L++M +I
Sbjct: 270 IGLQTALPSALELYRKGIISLKKLIEMFTIN 300
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 28.1 bits (62), Expect = 2.3
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 19/93 (20%)
Query: 85 RVLGLIDLTMLGVGATLG------------------VGVYVLAGSVARNQAGPSVVISFA 126
R L L+DLT L T + +Y +AR
Sbjct: 10 RALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTAAICIYPRFIPIARKTLKEQGTPEIR 69
Query: 127 IAAVTSLFSVVKNPNLRVLNSDVKAISNQIDSL 159
IA VT+ F + L AI+ D +
Sbjct: 70 IATVTN-FPHGNDDIDIALAETRAAIAYGADEV 101
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 108
Score = 26.3 bits (58), Expect = 4.8
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 89 LIDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV 136
L G T+ V V G+ R+QA VVI+ + F+V
Sbjct: 20 TRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTV 67
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 26.7 bits (59), Expect = 5.3
Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 12/131 (9%)
Query: 295 LAIILSLLIVFVCYFSIAVVI---TMIVPYYEQNADAPFPAIFDRLG-----WPVMKWLV 346
LA + L ++ YFS+ V+ V F ++ +P+ +
Sbjct: 7 LAAVTLLGVLLQAYFSLQVISARRAFRVSPPLTTGPPEFERVYRAQVNCSEYFPLFLATL 66
Query: 347 TVGSLF--ALFTAMFGAFFPLPRILYA--MSRDGLLYERLSYVSSRTQTPLLSTALSGVI 402
V +F A+ G + R+ Y +R L Y S+R L++ A G++
Sbjct: 67 WVAGIFFHEGAAALCGLVYLFARLRYFQGYARSAQLRLAPLYASARALWLLVALAALGLL 126
Query: 403 TAVMSAVFKLD 413
+ A +
Sbjct: 127 AHFLPAALRAA 137
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit
VIc {Cow (Bos taurus) [TaxId: 9913]}
Length = 73
Score = 25.0 bits (55), Expect = 6.0
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 290 KRNIPLAIILSLLIVFVCYFSIA 312
+ +I A ++SL F++A
Sbjct: 18 RFHIVGAFMVSLGFATFYKFAVA 40
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 26.3 bits (58), Expect = 7.7
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 509 GRLKFKVPWV----PLIPCLSMFMNIYL-MINLDVSTWVRFLV 546
G L F W + SMF N + ++ + V ++
Sbjct: 51 GMLPFSTDWFMTWEQNVHA-SMFCNAWQFLLKTGLCNGVDAVI 92
>d1tme1_ b.121.4.1 (1:) Theilovirus capsid proteins {Theiler's
murine encephalomyelitis virus, strain da [TaxId:
12124]}
Length = 256
Score = 26.4 bits (58), Expect = 8.3
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 448 TCDSEVDFVHVDTLANTYKDMTREDSASTELTNVTDKSQLNIQRDKNQSSNQQQYLSGQN 507
CD EV + T A ++T+ ++ ++ N +L G
Sbjct: 124 KCDLEVTVSALGTDTVASVLRWAPTGAPADVTDQLIGYTPSL----GETRNPHMWLVGAG 179
Query: 508 TGRLKFKVPWV 518
++ F VP+
Sbjct: 180 NTQISFVVPYN 190
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 323
Score = 26.4 bits (56), Expect = 9.5
Identities = 10/67 (14%), Positives = 20/67 (29%)
Query: 307 CYFSIAVVITMIVPYYEQNADAPFPAIFDRLGWPVMKWLVTVGSLFALFTAMFGAFFPLP 366
D + + + +TVG+L A + F PL
Sbjct: 236 RALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLR 295
Query: 367 RILYAMS 373
R++ + +
Sbjct: 296 RLVASFT 302
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.399
Gapped
Lambda K H
0.267 0.0344 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,980,256
Number of extensions: 91068
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 21
Length of query: 568
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 478
Effective length of database: 1,171,896
Effective search space: 560166288
Effective search space used: 560166288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (26.0 bits)