Query psy6065
Match_columns 316
No_of_seqs 162 out of 292
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 16:45:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0917|consensus 100.0 7.9E-92 1.7E-96 650.1 31.4 302 3-315 1-338 (338)
2 PF04652 DUF605: Vta1 like; I 100.0 4.5E-73 9.8E-78 551.3 16.6 159 13-171 1-159 (380)
3 KOG0916|consensus 96.2 0.0013 2.8E-08 73.6 0.4 70 7-76 30-100 (1679)
4 KOG1924|consensus 96.0 0.88 1.9E-05 49.5 19.5 19 111-129 393-411 (1102)
5 KOG1924|consensus 88.4 2.6 5.6E-05 46.0 9.2 7 146-152 475-481 (1102)
6 PF13030 DUF3891: Protein of u 76.2 19 0.00042 33.4 9.0 61 15-75 82-142 (221)
7 PF11464 Rbsn: Rabenosyn Rab b 72.8 4.2 9E-05 28.6 2.8 31 275-305 3-33 (42)
8 cd02682 MIT_AAA_Arch MIT: doma 67.6 10 0.00022 29.8 4.3 34 278-311 4-37 (75)
9 COG2956 Predicted N-acetylgluc 65.9 7.6 0.00016 38.8 4.0 34 276-309 176-209 (389)
10 PF00515 TPR_1: Tetratricopept 54.4 22 0.00049 22.0 3.5 28 283-310 4-31 (34)
11 smart00745 MIT Microtubule Int 53.7 23 0.0005 26.7 4.1 39 275-313 3-41 (77)
12 cd02681 MIT_calpain7_1 MIT: do 51.8 26 0.00057 27.3 4.1 35 278-312 4-38 (76)
13 PF05648 PEX11: Peroxisomal bi 51.6 1E+02 0.0022 27.3 8.5 116 14-132 3-144 (223)
14 KOG1923|consensus 51.5 3.8E+02 0.0082 29.8 13.8 33 129-161 212-244 (830)
15 KOG4849|consensus 51.2 2.7E+02 0.0058 28.4 11.8 44 271-314 356-407 (498)
16 PF07719 TPR_2: Tetratricopept 49.5 30 0.00065 21.0 3.5 28 283-310 4-31 (34)
17 cd02678 MIT_VPS4 MIT: domain c 46.4 34 0.00074 26.1 4.0 37 277-313 3-39 (75)
18 cd02682 MIT_AAA_Arch MIT: doma 45.7 1.5E+02 0.0032 23.3 7.4 68 87-154 1-70 (75)
19 PRK14163 heat shock protein Gr 42.1 1.1E+02 0.0023 28.7 7.2 50 53-106 58-107 (214)
20 COG1516 FliS Flagellin-specifi 41.8 41 0.0009 29.2 4.2 41 271-311 22-62 (132)
21 TIGR00208 fliS flagellar biosy 41.2 46 0.00099 28.1 4.3 41 271-311 22-62 (124)
22 PF04212 MIT: MIT (microtubule 41.2 44 0.00095 24.7 3.8 37 277-313 2-38 (69)
23 PRK05685 fliS flagellar protei 39.4 42 0.00091 28.5 3.9 41 271-311 26-66 (132)
24 cd02960 AGR Anterior Gradient 38.5 29 0.00062 29.8 2.7 21 292-312 108-128 (130)
25 PF12238 MSA-2c: Merozoite sur 38.3 2.7E+02 0.0059 25.9 9.2 17 55-71 47-63 (205)
26 COG5593 Nucleic-acid-binding p 36.8 2.7E+02 0.0058 30.0 9.8 106 41-146 122-254 (821)
27 TIGR00714 hscB Fe-S protein as 36.2 1.8E+02 0.0039 25.5 7.4 35 31-69 55-91 (157)
28 PHA02537 M terminase endonucle 35.1 43 0.00092 31.6 3.5 28 282-309 170-207 (230)
29 cd02656 MIT MIT: domain contai 34.9 76 0.0017 23.8 4.3 36 277-312 3-38 (75)
30 PF14788 EF-hand_10: EF hand; 34.1 58 0.0013 23.8 3.3 29 89-118 20-48 (51)
31 PF10516 SHNi-TPR: SHNi-TPR; 33.8 49 0.0011 22.4 2.7 28 285-312 6-33 (38)
32 COG2733 Predicted membrane pro 33.2 87 0.0019 32.0 5.5 90 51-145 254-345 (415)
33 PF13414 TPR_11: TPR repeat; P 32.6 53 0.0012 23.2 3.0 27 282-308 5-31 (69)
34 cd02683 MIT_1 MIT: domain cont 32.3 77 0.0017 24.6 4.0 36 277-312 3-38 (77)
35 PF13181 TPR_8: Tetratricopept 31.8 83 0.0018 19.1 3.4 27 283-309 4-30 (34)
36 PF02841 GBP_C: Guanylate-bind 31.5 1.4E+02 0.003 28.6 6.5 54 53-110 93-146 (297)
37 PRK10265 chaperone-modulator p 31.0 81 0.0017 25.6 4.1 36 38-73 50-88 (101)
38 PRK14143 heat shock protein Gr 31.0 2.3E+02 0.0049 26.9 7.6 18 88-105 116-133 (238)
39 PRK14147 heat shock protein Gr 30.3 2.2E+02 0.0048 25.5 7.1 18 88-105 67-84 (172)
40 PRK14155 heat shock protein Gr 27.6 2.5E+02 0.0055 26.0 7.2 50 53-106 31-80 (208)
41 PF13591 MerR_2: MerR HTH fami 27.3 1.1E+02 0.0023 24.0 4.1 36 38-73 42-80 (84)
42 PRK14140 heat shock protein Gr 27.2 3.9E+02 0.0084 24.5 8.2 13 150-162 127-140 (191)
43 PRK14158 heat shock protein Gr 26.9 3E+02 0.0064 25.3 7.4 8 156-163 136-143 (194)
44 smart00028 TPR Tetratricopepti 26.7 61 0.0013 17.5 2.1 28 283-310 4-31 (34)
45 PRK14162 heat shock protein Gr 26.5 3.6E+02 0.0079 24.7 7.9 18 88-105 88-105 (194)
46 PRK01356 hscB co-chaperone Hsc 26.1 2.1E+02 0.0047 25.3 6.3 29 116-144 138-166 (166)
47 PF13250 DUF4041: Domain of un 26.0 94 0.002 22.9 3.3 30 283-312 10-39 (56)
48 KOG1538|consensus 25.9 3.3E+02 0.0072 30.1 8.4 80 59-146 617-700 (1081)
49 PF02561 FliS: Flagellar prote 25.6 93 0.002 25.7 3.7 41 271-311 20-60 (122)
50 PF00627 UBA: UBA/TS-N domain; 24.9 1E+02 0.0023 20.1 3.1 22 281-303 16-37 (37)
51 PRK14142 heat shock protein Gr 24.4 2.4E+02 0.0051 26.6 6.4 48 55-106 53-100 (223)
52 KOG4552|consensus 24.3 5.2E+02 0.011 24.5 8.5 77 52-131 7-84 (272)
53 cd02679 MIT_spastin MIT: domai 23.8 1.7E+02 0.0037 23.0 4.6 39 276-314 4-42 (79)
54 PHA02535 P terminase ATPase su 23.4 3.4E+02 0.0073 29.2 8.0 106 19-127 22-180 (581)
55 PRK11436 biofilm-dependent mod 23.3 1.4E+02 0.003 22.7 3.7 32 37-68 16-47 (71)
56 PRK14144 heat shock protein Gr 23.1 4.2E+02 0.0091 24.5 7.7 18 88-105 94-111 (199)
57 cd00446 GrpE GrpE is the adeni 23.1 4.5E+02 0.0098 22.1 7.5 47 57-107 7-53 (137)
58 PF12631 GTPase_Cys_C: Catalyt 23.1 2E+02 0.0043 21.7 4.8 41 274-314 15-58 (73)
59 KOG0777|consensus 22.8 3E+02 0.0065 26.6 6.8 54 42-112 242-295 (322)
60 PRK14151 heat shock protein Gr 22.0 4.2E+02 0.0091 23.9 7.4 18 88-105 69-86 (176)
61 PRK14145 heat shock protein Gr 22.0 4.4E+02 0.0096 24.2 7.6 18 88-105 94-111 (196)
62 PRK14139 heat shock protein Gr 21.7 3.3E+02 0.0072 24.8 6.7 18 88-105 81-98 (185)
63 PF08318 COG4: COG4 transport 21.1 3.6E+02 0.0078 26.2 7.3 35 274-308 284-318 (331)
64 KOG3814|consensus 21.0 1.1E+02 0.0023 31.6 3.5 35 29-64 200-234 (531)
65 COG2178 Predicted RNA-binding 20.9 1.3E+02 0.0028 28.1 3.8 34 278-311 27-60 (204)
66 COG0576 GrpE Molecular chapero 20.5 5E+02 0.011 23.6 7.6 19 87-105 84-102 (193)
67 PF06760 DUF1221: Protein of u 20.4 46 0.001 30.8 0.9 45 119-163 11-65 (217)
68 smart00144 PI3K_rbd PI3-kinase 20.2 61 0.0013 26.6 1.5 13 149-161 88-100 (108)
No 1
>KOG0917|consensus
Probab=100.00 E-value=7.9e-92 Score=650.09 Aligned_cols=302 Identities=45% Similarity=0.686 Sum_probs=243.1
Q ss_pred CCCCCCCCchhhhHHHHHHHhhcccCCchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcchhhhHH
Q psy6065 3 IQLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNET 82 (316)
Q Consensus 3 ~~l~~vP~~LK~I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~eai~~e~ 82 (316)
+.+|++|+. +|+||||+|+||+++||||||||||||+|.|||+++++.|||+||+.||||||++|+|++|||+|++++
T Consensus 1 m~~p~~pa~--si~~~l~~a~e~~k~dpvvayycrlyamq~gmKid~qT~e~rk~lsgLm~~lealkkqlaDneaitne~ 78 (338)
T KOG0917|consen 1 MPLPPLPAQ--SIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSQTPECRKFLSGLMDQLEALKKQLADNEAITNEI 78 (338)
T ss_pred CCCCCCChH--HHHHHHHHHHhhcccccHHHHHHHHHHHHhcccCCccCHHHHHHHHHHHHHHHHHHHHhcchhhhhhch
Confidence 357888888 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy6065 83 AAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIP 162 (316)
Q Consensus 83 ~a~ayvenfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee~~~k~KYAKwkA~~I~k~lk~Ge~P~p 162 (316)
++++||||||||||++||++||+|+|+|+|+|+||+|++|||||.+||||++|+.++||||||||+|||||||+||+|+|
T Consensus 79 ~aqaHiE~fAlklF~~ADKqdragr~dk~vvkaFYtA~~~~dILs~FGel~e~~l~~rKYAkWKat~I~~clk~G~~p~P 158 (338)
T KOG0917|consen 79 VAQAHIENFALKLFLYADKQDRAGRFDKNVVKAFYTASLLIDILSVFGELTEENLKHRKYAKWKATYIHNCLKNGETPQP 158 (338)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhcccchhHHHHHHHHHHHHHHHHHhcCCChHHHhhhHHhHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC-CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCC---------
Q psy6065 163 GPPESGEGS-EGPSLSSQNSN-DQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNL------PGPS--------- 225 (316)
Q Consensus 163 gp~~~~~~~-e~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~--------- 225 (316)
|+.++|+++ +.++.+..+.+ ...+.||+.++| |. +..+..|...++|++|... ++++
T Consensus 159 g~~~deD~d~di~~~~~~s~d~~P~~tGp~~~sy----p~--Py~p~p~~q~p~p~~p~~~~yiS~~~S~ns~~qs~~s~ 232 (338)
T KOG0917|consen 159 GPVGDEDDDNDIEENEDASADSLPTQTGPTQPSY----PS--PYDPSPYHQDPMPSGPYTGIYISHEPSPNSLPQSYPSF 232 (338)
T ss_pred CCCCCcccccccCccccccCCCCCCCCCCCCCCC----CC--CCCCCCCCCCCCCCCCCCcceeecccCccccccccccc
Confidence 999988875 32222221111 233335666654 11 2223344444455554321 1111
Q ss_pred -----CCCCCCCCCCCCCC-----CCCCCCCCC-----CCCCCCCC--C-CCCcc-cCCccccccCCHHHHHHHHHHhhH
Q psy6065 226 -----ISGPLIPGPSIPSF-----PSPAVTPSS-----PSTPAPQP--A-MPALV-TQPEQEISYIEAELINKCQKYIKF 286 (316)
Q Consensus 226 -----~~~p~~p~~~~~~~-----~~p~~~p~~-----~p~p~~~~--~-~p~~~-~~~~~~~~~lt~~~~~~aqK~~K~ 286 (316)
.+.| |+++++.+ +++++..++ ++.|++|| . ++..+ ....+|+ ++|+|+|++|||||||
T Consensus 233 s~s~~~S~p--P~~pa~~nnP~p~ySst~~ap~ps~f~~~~P~~qP~~a~d~~~~qPV~~~g~-qptpE~faea~K~~ky 309 (338)
T KOG0917|consen 233 SESSLPSTP--PGAPAPANNPAPVYSSTGVAPNPSTFFTIQPTPQPIPAIDPALFQPVSQGGV-QPTPEDFAEAQKYCKY 309 (338)
T ss_pred ccccCCCCC--CCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccCCCC-ccCHHHHHHHHHHHHH
Confidence 3446 77766633 111111111 11233333 3 55555 5668898 9999999999999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHhhcCCC
Q psy6065 287 ASSALNYDDYKEAKSNLIKVLNILNTGRE 315 (316)
Q Consensus 287 A~SAL~yeDv~tAi~nL~kAL~lL~tg~e 315 (316)
|+|||+||||+|||+||+|||+||+||+|
T Consensus 310 A~sAl~yedVstavenL~KaL~lLt~~s~ 338 (338)
T KOG0917|consen 310 AGSALQYEDVSTAVENLQKALKLLTTGSE 338 (338)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999986
No 2
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=100.00 E-value=4.5e-73 Score=551.30 Aligned_cols=159 Identities=48% Similarity=0.758 Sum_probs=130.3
Q ss_pred hhhHHHHHHHhhcccCCchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHH
Q psy6065 13 KAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYA 92 (316)
Q Consensus 13 K~I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~eai~~e~~a~ayvenfA 92 (316)
|.|.|||+||+||++++|||||||||||||+||++..+++||+.||+.|||+||++|++++++++|.|++++++|||+||
T Consensus 1 k~i~~~l~~a~e~~~~~p~v~Y~c~~ya~~~~l~~~~~~~e~~~~~~~Ll~~lE~~K~~~~~~~~~~~~~~~~~~v~~fa 80 (380)
T PF04652_consen 1 KSISPFLKRAQELEKRDPVVAYYCRLYAVEQILKLKLRSKECRQFLTSLLDKLEKMKAELGDNEAILDDVAAQAYVENFA 80 (380)
T ss_dssp --HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHTT-TT--HHHHHHHHHHHHHHHHHHHCT---CHHC-HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhhcCCEEhHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHhhhccCcHHhhcCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q psy6065 93 LKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGS 171 (316)
Q Consensus 93 lklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee~~~k~KYAKwkA~~I~k~lk~Ge~P~pgp~~~~~~~ 171 (316)
|+||++||++||+|++|++|+++||||++|||||.+||+|++|+.+|||||||||+||+||||+|+.|++|+..+++++
T Consensus 81 ~~~f~~a~~~~~~~~~~~~~~~~f~~a~~~~~~l~~f~~~~~~~~~k~kyak~~a~~i~k~~~~g~~p~~~~~~~~~~~ 159 (380)
T PF04652_consen 81 LKLFNRADKEDRAGRATKQTAKTFYAASTFFEVLNIFGELDEEIEEKIKYAKWKAARIAKALKEGEDPNPGPPLEEEEE 159 (380)
T ss_dssp HHHHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-----------------
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhCCCChHHhhceeeeeeeHhhhHHHHHCCCCCCCCCccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998776664
No 3
>KOG0916|consensus
Probab=96.24 E-value=0.0013 Score=73.55 Aligned_cols=70 Identities=26% Similarity=0.389 Sum_probs=54.3
Q ss_pred CCCCchh-hhHHHHHHHhhcccCCchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcc
Q psy6065 7 PCPDSLK-AIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDND 76 (316)
Q Consensus 7 ~vP~~LK-~I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~e 76 (316)
.+|+++- .|+|+++.|++++..+|.|+|.||.|+.+.-|.-.++++++++|.+.+|...+..+..+...+
T Consensus 30 ~~~~s~~~~i~pilr~a~~i~~~~p~~a~l~~~~~~e~~~D~~s~gr~v~qf~~~~~~~~~~~~~~~~~~~ 100 (1679)
T KOG0916|consen 30 GLPSSLYDDIAPILRVANEIEQQNPRVAYLCRFHAFEKRMDPTSSGRGVRQFKTLDLNSYTSLGDSLAKSD 100 (1679)
T ss_pred cCCcccccccchhhhccccccccCchhhhccccchHhhcCCCCCCcchhhhhhhhhccccCcccccccccc
Confidence 4666654 599999999999999999999999999999444447899999999999944333333344433
No 4
>KOG1924|consensus
Probab=95.95 E-value=0.88 Score=49.46 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy6065 111 NVVKAFYTASILMDVLQTF 129 (316)
Q Consensus 111 ~~~k~F~aAs~L~dVL~~F 129 (316)
++++.=-+-..|+.||+++
T Consensus 393 n~vkdT~aE~yfLSILQhl 411 (1102)
T KOG1924|consen 393 NTVKDTGAEPYFLSILQHL 411 (1102)
T ss_pred HhhhhccccchHHHHHHHH
Confidence 4444444445566666654
No 5
>KOG1924|consensus
Probab=88.35 E-value=2.6 Score=46.03 Aligned_cols=7 Identities=43% Similarity=0.444 Sum_probs=3.3
Q ss_pred HHHHHHH
Q psy6065 146 KAAYIHN 152 (316)
Q Consensus 146 kA~~I~k 152 (316)
||+.+.|
T Consensus 475 kA~e~~k 481 (1102)
T KOG1924|consen 475 KAAELEK 481 (1102)
T ss_pred HHHHHHH
Confidence 4554444
No 6
>PF13030 DUF3891: Protein of unknown function (DUF3891)
Probab=76.17 E-value=19 Score=33.40 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=49.0
Q ss_pred hHHHHHHHhhcccCCchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCc
Q psy6065 15 IQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDN 75 (316)
Q Consensus 15 I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~ 75 (316)
|..|-+.-++.+..+|.+++.|.+|..-.--+....++++..|+......=++.+++++.+
T Consensus 82 ~~~~~~gi~~~~~~~~yaaLL~S~H~~~ly~~~~~~~~~~~~Fl~~e~~rQ~~l~~~L~~~ 142 (221)
T PF13030_consen 82 LAFYRRGIDEAEQKSPYAALLCSMHYSFLYENRTGQSPEVDAFLDEEEQRQERLRAELGID 142 (221)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 6666666777788999999999999855544443448999999999999999999888754
No 7
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=72.79 E-value=4.2 Score=28.59 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhHHHhhcCCCCHHHHHHHHHH
Q psy6065 275 ELINKCQKYIKFASSALNYDDYKEAKSNLIK 305 (316)
Q Consensus 275 ~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~k 305 (316)
+||.-.+.|.+.|-+|-.||+|.|=-.||..
T Consensus 3 eQi~~I~~~I~qAk~~~r~dEV~~L~~NL~E 33 (42)
T PF11464_consen 3 EQINIIESYIKQAKAARRFDEVATLEENLRE 33 (42)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6889999999999999999999998888864
No 8
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=67.63 E-value=10 Score=29.75 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy6065 278 NKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN 311 (316)
Q Consensus 278 ~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~ 311 (316)
..|.+|++-|+.+=+=-+..+||.++++|..+|.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~ 37 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLS 37 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5789999999999888899999999999999885
No 9
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=65.88 E-value=7.6 Score=38.78 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=31.5
Q ss_pred HHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHH
Q psy6065 276 LINKCQKYIKFASSALNYDDYKEAKSNLIKVLNI 309 (316)
Q Consensus 276 ~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~l 309 (316)
.+.-||=||-.|-+++.=+|+.-|+.+|.|||.-
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 5677999999999999999999999999999963
No 10
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=54.36 E-value=22 Score=21.95 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=20.4
Q ss_pred HhhHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy6065 283 YIKFASSALNYDDYKEAKSNLIKVLNIL 310 (316)
Q Consensus 283 ~~K~A~SAL~yeDv~tAi~nL~kAL~lL 310 (316)
|..-|..-+.-.|...|++.+++||++=
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4444555566788999999999999873
No 11
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=53.69 E-value=23 Score=26.67 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhcC
Q psy6065 275 ELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTG 313 (316)
Q Consensus 275 ~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~tg 313 (316)
..+.+|..+++-|+++=+-.+...|+..+++|+..|..|
T Consensus 3 ~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~ 41 (77)
T smart00745 3 DYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEG 41 (77)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998754
No 12
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.77 E-value=26 Score=27.33 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=31.0
Q ss_pred HHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 278 NKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 278 ~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
.+|.+|++-|+.+=+=-+...|+.++++|+.+|..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 47889999999888888899999999999999875
No 13
>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)
Probab=51.58 E-value=1e+02 Score=27.28 Aligned_cols=116 Identities=15% Similarity=0.245 Sum_probs=57.1
Q ss_pred hhHHHHHHHhhcccCCchHHHHHHHHHHHH------------HhhhcCCChhHHHHH--HHHHHHHHHhhhhcCCcchhh
Q psy6065 14 AIQHFLNVASEHDNRDLTVSYWCRLHALQK------------ALKIDKSSDGAKMLL--LKLMDWLEQEKKTHRDNDTIM 79 (316)
Q Consensus 14 ~I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~------------~lkl~~~~~E~~~fl--~~LLd~LE~~K~~l~~~eai~ 79 (316)
.+..|+....--|+.--++-|.|++++--. ..++.+.-...|.++ .+.++.+...++.......
T Consensus 3 ~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~l~~~~~~~~~~~~-- 80 (223)
T PF05648_consen 3 HFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARKLFRLGKFLPMLQAARKYIKKKPS-- 80 (223)
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHHHHHHHccHHHHHHHHHhhccCCc--
Confidence 355566666556666678999999885422 122222222233332 1223333333332221110
Q ss_pred hHH-HHHHHHHHHHHHHHHHHhhhh---hcc--------cccHHHHHHHHHHHHHHHHHhhhcCC
Q psy6065 80 NET-AAQAYIENYALKLFQWADSMD---RAS--------TFNKNVVKAFYTASILMDVLQTFGET 132 (316)
Q Consensus 80 ~e~-~a~ayvenfAlklF~~AD~~d---Rag--------~~~k~~~k~F~aAs~L~dVL~~Fgel 132 (316)
|.. -.-..+.+..+-+|.-.|+-- +.| +++ .....||.++++++++..+-++
T Consensus 81 d~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~~~~~~~-~~s~~~W~~~l~~~l~~~~~~l 144 (223)
T PF05648_consen 81 DQVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNKSKKKWS-RWSNRFWFASLVLSLVRDLREL 144 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122334555555555555321 111 233 3567799999999987776543
No 14
>KOG1923|consensus
Probab=51.47 E-value=3.8e+02 Score=29.81 Aligned_cols=33 Identities=15% Similarity=0.030 Sum_probs=27.0
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy6065 129 FGETSEDIEQNKKYAKWKAAYIHNCLKSGETPI 161 (316)
Q Consensus 129 Fgel~ee~~~k~KYAKwkA~~I~k~lk~Ge~P~ 161 (316)
-+.+.+|+---+||+.-+--.|..|.+.+++++
T Consensus 212 ~~~~~dels~m~k~~~~~e~~lk~~~~~l~~ki 244 (830)
T KOG1923|consen 212 RKALLDELSCMQKLSIEKERSLKAIARLLETKI 244 (830)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 355667777788999999999999999988764
No 15
>KOG4849|consensus
Probab=51.19 E-value=2.7e+02 Score=28.37 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHH--------HhhHHHhhcCCCCHHHHHHHHHHHHHHhhcCC
Q psy6065 271 YIEAELINKCQK--------YIKFASSALNYDDYKEAKSNLIKVLNILNTGR 314 (316)
Q Consensus 271 ~lt~~~~~~aqK--------~~K~A~SAL~yeDv~tAi~nL~kAL~lL~tg~ 314 (316)
-|+..+|.+.-+ -+--|+|--.--|.+.||+-|..|+.|++.-+
T Consensus 356 plSeAEFEdiM~RNraiSSSAIsrAvsdASaGDy~~AiETllTAI~lIKqSr 407 (498)
T KOG4849|consen 356 PLSEAEFEDIMTRNRAISSSAISRAVSDASAGDYKGAIETLLTAIQLIKQSR 407 (498)
T ss_pred cchHHHHHHHHhhcchhhHHHHHHHhcccccccchhHHHHHHHHHHHHHhhc
Confidence 456667666544 23456666778899999999999999987543
No 16
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=49.46 E-value=30 Score=21.01 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=21.7
Q ss_pred HhhHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy6065 283 YIKFASSALNYDDYKEAKSNLIKVLNIL 310 (316)
Q Consensus 283 ~~K~A~SAL~yeDv~tAi~nL~kAL~lL 310 (316)
+...|.....-.+...|++-+++||++=
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4556677777889999999999999873
No 17
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.40 E-value=34 Score=26.06 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhcC
Q psy6065 277 INKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTG 313 (316)
Q Consensus 277 ~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~tg 313 (316)
+.+|..+++-|+..=.-.+...|+..+..|+.+|..+
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999988643
No 18
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=45.68 E-value=1.5e+02 Score=23.26 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHHHHH
Q psy6065 87 YIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGE--TSEDIEQNKKYAKWKAAYIHNCL 154 (316)
Q Consensus 87 yvenfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fge--l~ee~~~k~KYAKwkA~~I~k~l 154 (316)
++|+-|.++-.+|=..|+.|++...++-==-++..|+.+++...+ +-.-..+|++=.+=||-.|.+.+
T Consensus 1 ~L~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 1 MLEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 367888899999999999999887776544455566667777644 22223455544454666666643
No 19
>PRK14163 heat shock protein GrpE; Provisional
Probab=42.11 E-value=1.1e+02 Score=28.69 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy6065 53 GAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRAS 106 (316)
Q Consensus 53 E~~~fl~~LLd~LE~~K~~l~~~eai~~e~~a~ayvenfAlklF~~AD~~dRag 106 (316)
+.+.-++-+.-..|.+|++...+ -+..-+.-+++|+..|+.-.|+-+|+-
T Consensus 58 el~d~~lR~~AEfeN~rkR~~kE----~e~~~~~a~~~~~~~LLpVlDnLerAl 107 (214)
T PRK14163 58 ERTADLQRLQAEYQNYRRRVERD----RVTVKEIAVANLLSELLPVLDDVGRAR 107 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 44444555555666666655431 111223336777777777777777773
No 20
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=41.84 E-value=41 Score=29.16 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN 311 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~ 311 (316)
+|+.=-|..|.++++-|.-|++=+|...+..+|.||..+++
T Consensus 22 ~Li~MLyeg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~ 62 (132)
T COG1516 22 KLILMLYEGALKFLKRAKEAIEQEDIEEKNESIDKAIDIIT 62 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56666789999999999999999999999999999999986
No 21
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=41.20 E-value=46 Score=28.06 Aligned_cols=41 Identities=37% Similarity=0.600 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN 311 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~ 311 (316)
+|..=-+..|.++++.|..|++=.|...+-.+|.||..+|.
T Consensus 22 ~Li~mLydg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~ 62 (124)
T TIGR00208 22 ELTLMLYNGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQ 62 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55555678999999999999999999999999999999984
No 22
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=41.19 E-value=44 Score=24.72 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=30.5
Q ss_pred HHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhcC
Q psy6065 277 INKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTG 313 (316)
Q Consensus 277 ~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~tg 313 (316)
+.+|-.+++-|+.+=+=.+...|++.+++|+.+|..+
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4577888888888877778999999999999988653
No 23
>PRK05685 fliS flagellar protein FliS; Validated
Probab=39.40 E-value=42 Score=28.53 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN 311 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~ 311 (316)
+|..=-+..|-++++.|..|++=.|...+.++|.||..+|.
T Consensus 26 ~Li~mLydgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~ 66 (132)
T PRK05685 26 KLIQMLYEGALSFLAQAKLAIEQGDIEAKGEYLSKAINIIN 66 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55555678999999999999999999999999999999985
No 24
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=38.52 E-value=29 Score=29.84 Aligned_cols=21 Identities=29% Similarity=0.282 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhc
Q psy6065 292 NYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 292 ~yeDv~tAi~nL~kAL~lL~t 312 (316)
.+.|.+.-+.|.+||++||.|
T Consensus 108 ~~~~~~~~~~~m~~a~~~~~~ 128 (130)
T cd02960 108 EPADIPLLIENMKKALKLLKT 128 (130)
T ss_pred CcCcHHHHHHHHHHHHHHHhc
Confidence 578889999999999999987
No 25
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=38.28 E-value=2.7e+02 Score=25.89 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy6065 55 KMLLLKLMDWLEQEKKT 71 (316)
Q Consensus 55 ~~fl~~LLd~LE~~K~~ 71 (316)
..-.-.||+.+-.||..
T Consensus 47 ee~F~~l~~sV~~m~~~ 63 (205)
T PF12238_consen 47 EEKFKSLFDSVPLMKHK 63 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666665555443
No 26
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=36.79 E-value=2.7e+02 Score=30.00 Aligned_cols=106 Identities=23% Similarity=0.265 Sum_probs=62.9
Q ss_pred HHHHhhhc--CCChhHHHHHHHHHHH----------HHHhhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy6065 41 LQKALKID--KSSDGAKMLLLKLMDW----------LEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTF 108 (316)
Q Consensus 41 lq~~lkl~--~~~~E~~~fl~~LLd~----------LE~~K~~l~~~eai~~e~~a~ayvenfAlklF~~AD~~dRag~~ 108 (316)
++..+... ++..+..+.|..|-|- |-=+|+|-+....+++....+-|+|.|+-+||.+-....-.-.+
T Consensus 122 letLls~C~kksrn~a~q~l~~lKDLfi~gllp~rklry~k~q~~lsk~v~~k~l~~~~fesflk~l~fr~levle~ls~ 201 (821)
T COG5593 122 LETLLSFCEKKSRNVAYQVLKNLKDLFISGLLPNRKLRYFKNQPGLSKEVQNKYLKQRIFESFLKNLRFRVLEVLEVLSH 201 (821)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhcccCcchhhHhhhcCcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444443 3445556666666554 34467776655678899999999999999999976544333332
Q ss_pred c------HHHHHHHH---HH--HHHHHHHhhh----cCCcHHHHHHHHHHHHH
Q psy6065 109 N------KNVVKAFY---TA--SILMDVLQTF----GETSEDIEQNKKYAKWK 146 (316)
Q Consensus 109 ~------k~~~k~F~---aA--s~L~dVL~~F----gel~ee~~~k~KYAKwk 146 (316)
+ +++++..| .| -.++++|++| |+-++-+..|--|.-.|
T Consensus 202 d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilk 254 (821)
T COG5593 202 DPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILK 254 (821)
T ss_pred chHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHH
Confidence 2 34444433 33 2456677777 55445455555555433
No 27
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=36.23 E-value=1.8e+02 Score=25.49 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhhhc--CCChhHHHHHHHHHHHHHHhh
Q psy6065 31 TVSYWCRLHALQKALKID--KSSDGAKMLLLKLMDWLEQEK 69 (316)
Q Consensus 31 vVAYyCrlYAlq~~lkl~--~~~~E~~~fl~~LLd~LE~~K 69 (316)
...|.|.++ |+.+. ..+.....||+.+|++-|.+.
T Consensus 55 Ra~ylL~l~----g~~~~~e~~~~~d~~fLme~Me~rE~le 91 (157)
T TIGR00714 55 RAEYMLSLH----GIDLASEQHSVRDTAFLMEQLELREELD 91 (157)
T ss_pred hHHHHHHhc----CCCCCcccCCCCCHHHHHHHHHHHHHHH
Confidence 466766666 55443 234456789999999988864
No 28
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.09 E-value=43 Score=31.57 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=22.4
Q ss_pred HHhhHHHhhc----------CCCCHHHHHHHHHHHHHH
Q psy6065 282 KYIKFASSAL----------NYDDYKEAKSNLIKVLNI 309 (316)
Q Consensus 282 K~~K~A~SAL----------~yeDv~tAi~nL~kAL~l 309 (316)
|++|+++=+| +=++...|+..|++|+.|
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 7889998888 555667788888888876
No 29
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=34.88 E-value=76 Score=23.80 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=31.2
Q ss_pred HHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 277 INKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 277 ~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
+.+|..+++-|+.+=+-.+...|++.+..|+.+|..
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 567888999898888888999999999999998864
No 30
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=34.13 E-value=58 Score=23.78 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHHHH
Q psy6065 89 ENYALKLFQWADSMDRASTFNKNVVKAFYT 118 (316)
Q Consensus 89 enfAlklF~~AD~~dRag~~~k~~~k~F~a 118 (316)
+.||..||..||+ ...|+....=...||-
T Consensus 20 ~~yA~~LFq~~D~-s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 20 DEYARQLFQECDK-SQSGRLEGEEFEEFYK 48 (51)
T ss_dssp HHHHHHHHHHH-S-SSSSEBEHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cCCCCccHHHHHHHHH
Confidence 5689999999997 4577777766666664
No 31
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=33.76 E-value=49 Score=22.44 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=20.9
Q ss_pred hHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 285 KFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 285 K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
+-+-=.|.=++-..|++.|++||+|.+.
T Consensus 6 ~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 6 LLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3333445557788999999999999864
No 32
>COG2733 Predicted membrane protein [Function unknown]
Probab=33.23 E-value=87 Score=31.98 Aligned_cols=90 Identities=14% Similarity=0.095 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhhhhhcc-cccHHHHHHHHHHHHHHHHHhhh
Q psy6065 51 SDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRAS-TFNKNVVKAFYTASILMDVLQTF 129 (316)
Q Consensus 51 ~~E~~~fl~~LLd~LE~~K~~l~~~eai~~e~~a~ayvenfAlklF~~AD~~dRag-~~~k~~~k~F~aAs~L~dVL~~F 129 (316)
-++...|+..|.++|-........-|++.++..+..-++.||-+++....+-.+.+ +-.. ......|+++.+-|
T Consensus 254 rk~~~R~~~~~i~~L~~Dp~~~~r~e~iK~~~~~~~~i~~~~~~~w~~~~~~l~~D~e~~~-----s~l~~~l~~~~~~~ 328 (415)
T COG2733 254 RKDFDRFLFDLIDDLYHDPGMAARAEAIKSYLKEDEAIATAAGDMWTSLSEWLKEDYESED-----SMLRKRLARAVQSV 328 (415)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCch-----hHHHHHHHHHHHHH
Confidence 34445577777666544433333334555555555557778888777764333322 1111 22344577777777
Q ss_pred cC-CcHHHHHHHHHHHH
Q psy6065 130 GE-TSEDIEQNKKYAKW 145 (316)
Q Consensus 130 ge-l~ee~~~k~KYAKw 145 (316)
|+ |.+|-.-+-|.++|
T Consensus 329 Ge~l~~D~~lr~kln~~ 345 (415)
T COG2733 329 GEELIADDALRAKLNEH 345 (415)
T ss_pred HHHHhccHHHHHHHHHH
Confidence 76 54444444454544
No 33
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=32.60 E-value=53 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=11.6
Q ss_pred HHhhHHHhhcCCCCHHHHHHHHHHHHH
Q psy6065 282 KYIKFASSALNYDDYKEAKSNLIKVLN 308 (316)
Q Consensus 282 K~~K~A~SAL~yeDv~tAi~nL~kAL~ 308 (316)
.+...|...++=.|...|+..+.+||+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344444444444444444444444
No 34
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=32.33 E-value=77 Score=24.58 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=30.3
Q ss_pred HHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 277 INKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 277 ~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
..+|..+++-|+..=+=.+...|+.++++||.+|..
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 457888888888877777889999999999998864
No 35
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=31.76 E-value=83 Score=19.13 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=19.9
Q ss_pred HhhHHHhhcCCCCHHHHHHHHHHHHHH
Q psy6065 283 YIKFASSALNYDDYKEAKSNLIKVLNI 309 (316)
Q Consensus 283 ~~K~A~SAL~yeDv~tAi~nL~kAL~l 309 (316)
|...+..-.+-.|...|++.|++|+++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334444455667899999999999986
No 36
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=31.53 E-value=1.4e+02 Score=28.58 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhhhhhcccccH
Q psy6065 53 GAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNK 110 (316)
Q Consensus 53 E~~~fl~~LLd~LE~~K~~l~~~eai~~e~~a~ayvenfAlklF~~AD~~dRag~~~k 110 (316)
....|.-.|++.|+..+..+.. .|+..+..+|.++..+||..-+...+.|.+..
T Consensus 93 ~~~~~~~~L~~~i~~~~~~~~~----~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~ 146 (297)
T PF02841_consen 93 EDQKYQKKLMEQIEKKFEEFCK----QNEEASEKKCQALLQELFQPLEEKLKQGCYSK 146 (297)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 6678999999999988776643 46677889999999999999999999887653
No 37
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=31.03 E-value=81 Score=25.59 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=29.3
Q ss_pred HHHHHHHhhhc---CCChhHHHHHHHHHHHHHHhhhhcC
Q psy6065 38 LHALQKALKID---KSSDGAKMLLLKLMDWLEQEKKTHR 73 (316)
Q Consensus 38 lYAlq~~lkl~---~~~~E~~~fl~~LLd~LE~~K~~l~ 73 (316)
+..++++..|+ .-+.+.-....+|||++|++++++.
T Consensus 50 l~r~~~a~rL~~dl~in~~gialvl~LLd~i~~Lr~el~ 88 (101)
T PRK10265 50 AIVVQRAVRLRHELALDWPGIAVALTLLDEIAHLKQENR 88 (101)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777775 4578889999999999999988764
No 38
>PRK14143 heat shock protein GrpE; Provisional
Probab=30.98 E-value=2.3e+02 Score=26.89 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy6065 88 IENYALKLFQWADSMDRA 105 (316)
Q Consensus 88 venfAlklF~~AD~~dRa 105 (316)
+++|+..|+.-.|+-+|+
T Consensus 116 ~~~~~~~lLpV~DnLerA 133 (238)
T PRK14143 116 KCNTLSEILPVVDNFERA 133 (238)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 555555555555555555
No 39
>PRK14147 heat shock protein GrpE; Provisional
Probab=30.29 E-value=2.2e+02 Score=25.53 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy6065 88 IENYALKLFQWADSMDRA 105 (316)
Q Consensus 88 venfAlklF~~AD~~dRa 105 (316)
+++|+..|+.-.|+-+|+
T Consensus 67 ~~~~~~~lLpv~DnlerA 84 (172)
T PRK14147 67 NEKLLGELLPVFDSLDAG 84 (172)
T ss_pred HHHHHHHHhhhhhHHHHH
Confidence 455555555555555554
No 40
>PRK14155 heat shock protein GrpE; Provisional
Probab=27.60 E-value=2.5e+02 Score=25.99 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy6065 53 GAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRAS 106 (316)
Q Consensus 53 E~~~fl~~LLd~LE~~K~~l~~~eai~~e~~a~ayvenfAlklF~~AD~~dRag 106 (316)
+.+.-+.-++..+|.+|++...+ .+..-+.-+++|+..|+.-.|+-+|+-
T Consensus 31 elkd~~lR~~AefeN~RKR~~kE----~e~~~~~a~~~~~~~LLpV~DnLerAl 80 (208)
T PRK14155 31 ALKDQALRYAAEAENTKRRAERE----MNDARAYAIQKFARDLLGAADNLGRAT 80 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHhhHHHHH
Confidence 33444445555666666655421 111223336777777777777666664
No 41
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=27.34 E-value=1.1e+02 Score=23.95 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=27.0
Q ss_pred HHHHHHHhhhc---CCChhHHHHHHHHHHHHHHhhhhcC
Q psy6065 38 LHALQKALKID---KSSDGAKMLLLKLMDWLEQEKKTHR 73 (316)
Q Consensus 38 lYAlq~~lkl~---~~~~E~~~fl~~LLd~LE~~K~~l~ 73 (316)
+.-++++..++ .-+.+.-....+|||++|++++++.
T Consensus 42 l~rl~~~~rL~~Dl~in~~gi~lil~LLd~i~~L~~el~ 80 (84)
T PF13591_consen 42 LARLRRIRRLHRDLGINLEGIALILDLLDRIEQLRRELR 80 (84)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554 3578888999999999999988764
No 42
>PRK14140 heat shock protein GrpE; Provisional
Probab=27.21 E-value=3.9e+02 Score=24.50 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=6.5
Q ss_pred HHHHH-hcCCCCCC
Q psy6065 150 IHNCL-KSGETPIP 162 (316)
Q Consensus 150 I~k~l-k~Ge~P~p 162 (316)
+.+.| +.|-.+.+
T Consensus 127 l~~~L~k~GV~~i~ 140 (191)
T PRK14140 127 LLEALKKEGVEVIE 140 (191)
T ss_pred HHHHHHHCCCEeeC
Confidence 33334 34776653
No 43
>PRK14158 heat shock protein GrpE; Provisional
Probab=26.94 E-value=3e+02 Score=25.32 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=4.4
Q ss_pred cCCCCCCC
Q psy6065 156 SGETPIPG 163 (316)
Q Consensus 156 ~Ge~P~pg 163 (316)
.|-.+...
T Consensus 136 ~Gv~~I~~ 143 (194)
T PRK14158 136 FGVTPVEA 143 (194)
T ss_pred CCCEEecC
Confidence 36666543
No 44
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=26.73 E-value=61 Score=17.55 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=20.6
Q ss_pred HhhHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy6065 283 YIKFASSALNYDDYKEAKSNLIKVLNIL 310 (316)
Q Consensus 283 ~~K~A~SAL~yeDv~tAi~nL~kAL~lL 310 (316)
+...|.......+...|+.-++++|++-
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4456666677778888888888888753
No 45
>PRK14162 heat shock protein GrpE; Provisional
Probab=26.50 E-value=3.6e+02 Score=24.74 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy6065 88 IENYALKLFQWADSMDRA 105 (316)
Q Consensus 88 venfAlklF~~AD~~dRa 105 (316)
+++|+..|+.-.|+-+|+
T Consensus 88 ~~~~~~~LLpV~DnLerA 105 (194)
T PRK14162 88 SQSLAKDVLPAMDNLERA 105 (194)
T ss_pred HHHHHHHHhhHHhHHHHH
Confidence 555555555555555554
No 46
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=26.11 E-value=2.1e+02 Score=25.28 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q psy6065 116 FYTASILMDVLQTFGETSEDIEQNKKYAK 144 (316)
Q Consensus 116 F~aAs~L~dVL~~Fgel~ee~~~k~KYAK 144 (316)
|-.|..+.-=|+-|..+.+++.+|++=|+
T Consensus 138 ~~~A~~~~~~L~y~~kl~~~i~~k~~~~~ 166 (166)
T PRK01356 138 LSDATIKTSKLKYIGTLLNKLQEKIKSCK 166 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45666666667777778888888887653
No 47
>PF13250 DUF4041: Domain of unknown function (DUF4041)
Probab=26.04 E-value=94 Score=22.88 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=27.5
Q ss_pred HhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 283 YIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 283 ~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
-|..|++-+.|..+.+.++.++||...|..
T Consensus 10 EcD~~i~kv~~~Ni~~~~~rI~ksf~~iNk 39 (56)
T PF13250_consen 10 ECDAAISKVKYNNIDTMEKRIEKSFEQINK 39 (56)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999998864
No 48
>KOG1538|consensus
Probab=25.87 E-value=3.3e+02 Score=30.15 Aligned_cols=80 Identities=30% Similarity=0.390 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhhcC-CcchhhhHHHHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhh-cCCcHHH
Q psy6065 59 LKLMDWLEQEKKTHR-DNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTF-GETSEDI 136 (316)
Q Consensus 59 ~~LLd~LE~~K~~l~-~~eai~~e~~a~ayvenfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~F-gel~ee~ 136 (316)
+.|+.+|+++|++-+ .++.+--++.|.+--..-|-|||.+.-.+.|+ --.||-.-.||..+-| +.-+++.
T Consensus 617 L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRA--------lEmyTDlRMFD~aQE~~~~g~~~e 688 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRA--------LEMYTDLRMFDYAQEFLGSGDPKE 688 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhH--------HHHHHHHHHHHHHHHHhhcCChHH
Confidence 578888999887655 44555555555444455577888888777776 3356666677755555 4444433
Q ss_pred HH--HHHHHHHH
Q psy6065 137 EQ--NKKYAKWK 146 (316)
Q Consensus 137 ~~--k~KYAKwk 146 (316)
.+ -||-|.|-
T Consensus 689 KKmL~RKRA~WA 700 (1081)
T KOG1538|consen 689 KKMLIRKRADWA 700 (1081)
T ss_pred HHHHHHHHHHHh
Confidence 32 57888884
No 49
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=25.64 E-value=93 Score=25.73 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN 311 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~ 311 (316)
+|..--+..|-++.+.|..|++=.|...+..+|.||..+|.
T Consensus 20 ~Li~~Lyd~ai~~l~~a~~a~~~~~~~~~~~~l~ka~~Ii~ 60 (122)
T PF02561_consen 20 QLILMLYDGAIEFLKQAKEAIEQGDIEEKNEALQKAQDIIT 60 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55566678999999999999999999999999999999885
No 50
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=24.86 E-value=1e+02 Score=20.07 Aligned_cols=22 Identities=23% Similarity=0.064 Sum_probs=17.7
Q ss_pred HHHhhHHHhhcCCCCHHHHHHHH
Q psy6065 281 QKYIKFASSALNYDDYKEAKSNL 303 (316)
Q Consensus 281 qK~~K~A~SAL~yeDv~tAi~nL 303 (316)
...|+.|..+-++ |+..|++-|
T Consensus 16 ~~~~~~AL~~~~~-nve~A~~~L 37 (37)
T PF00627_consen 16 REQAREALRACNG-NVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHhC
Confidence 3478888888888 899988865
No 51
>PRK14142 heat shock protein GrpE; Provisional
Probab=24.42 E-value=2.4e+02 Score=26.63 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy6065 55 KMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRAS 106 (316)
Q Consensus 55 ~~fl~~LLd~LE~~K~~l~~~eai~~e~~a~ayvenfAlklF~~AD~~dRag 106 (316)
+.=++-++...|.+|+....+ -+...+.=+++|+.+|+.-.|+-+|+-
T Consensus 53 kdk~lR~~AEfEN~RKR~erE----~e~~~~~A~e~~~kdLLpVlDnLERAL 100 (223)
T PRK14142 53 TADLQRVQADFANYRKRALRD----QQAAADRAKASVVSQLLGVLDDLERAR 100 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhchHhHHHHHH
Confidence 333455666677777766432 122233347889999988888888884
No 52
>KOG4552|consensus
Probab=24.29 E-value=5.2e+02 Score=24.51 Aligned_cols=77 Identities=18% Similarity=0.056 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCcchhhhH-HHHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhc
Q psy6065 52 DGAKMLLLKLMDWLEQEKKTHRDNDTIMNE-TAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFG 130 (316)
Q Consensus 52 ~E~~~fl~~LLd~LE~~K~~l~~~eai~~e-~~a~ayvenfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fg 130 (316)
...|.-|+.++|.||.+-+++-+.-++.+. ..-++==++-.++||...|.+-|.- ..++--|.---.++++|..--
T Consensus 7 ~StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~l---lkla~eq~k~e~~m~~Lea~V 83 (272)
T KOG4552|consen 7 RSTRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTL---LKLAPEQQKREQLMRTLEAHV 83 (272)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHH---HHHhHhHHHHHHHHHHHHHHH
Confidence 345667888888888877665432222221 1112212335677777776655441 123333444445566555543
Q ss_pred C
Q psy6065 131 E 131 (316)
Q Consensus 131 e 131 (316)
|
T Consensus 84 E 84 (272)
T KOG4552|consen 84 E 84 (272)
T ss_pred H
Confidence 3
No 53
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=23.79 E-value=1.7e+02 Score=23.01 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=32.5
Q ss_pred HHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhcCC
Q psy6065 276 LINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNTGR 314 (316)
Q Consensus 276 ~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~tg~ 314 (316)
.+.+|-.++--|+++=.-++...|+.-++||++.|..|-
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ 42 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGI 42 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 456777777778887777899999999999999998774
No 54
>PHA02535 P terminase ATPase subunit; Provisional
Probab=23.40 E-value=3.4e+02 Score=29.15 Aligned_cols=106 Identities=21% Similarity=0.279 Sum_probs=60.9
Q ss_pred HHHHhhcccCCchHHHHHHHHH---------HHH---------HhhhcCCChhHHHHHHHHHHHHHHhh-----------
Q psy6065 19 LNVASEHDNRDLTVSYWCRLHA---------LQK---------ALKIDKSSDGAKMLLLKLMDWLEQEK----------- 69 (316)
Q Consensus 19 Lk~A~Ele~~dPvVAYyCrlYA---------lq~---------~lkl~~~~~E~~~fl~~LLd~LE~~K----------- 69 (316)
-.+|.+|.-....|.+|++-|- ++. +.| +.++...-+=+.-|+.++|++.
T Consensus 22 ~eIA~~LGv~~~Tl~~W~kr~~w~~~~~~~~v~~~~~~r~~~l~~k-~~k~~~d~keid~l~~~~~r~~r~~~~~~~~~~ 100 (581)
T PHA02535 22 AEIAEELGLKSRTIYSWKERDGWRDLLPEERIEESIEARLIQLIEK-ENKTGGDYKEIDLLIRQHERLARVRRYSGTGNE 100 (581)
T ss_pred HHHHHHhCCChhHHHHHhccccccccCCcccHHHHHHHHHHHHHcc-CCCChhhHHHHHHHHHHHHHHHhhhhhcccCCc
Confidence 3677888667788999997653 222 223 2333333333455556666652
Q ss_pred ---------------hhcCCcchhhhHHHHHHHHHHHHHHHHHH------Hh--hhhhcccccHHHHHHHHHHHH-HHHH
Q psy6065 70 ---------------KTHRDNDTIMNETAAQAYIENYALKLFQW------AD--SMDRASTFNKNVVKAFYTASI-LMDV 125 (316)
Q Consensus 70 ---------------~~l~~~eai~~e~~a~ayvenfAlklF~~------AD--~~dRag~~~k~~~k~F~aAs~-L~dV 125 (316)
+.-..| .++++. .....+.|--.||.+ +. ...|....+.++-++||.|.- |.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~kn-~~s~~~-~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~da 178 (581)
T PHA02535 101 ADLNPNVANRNKGPKRKPVKN-DISDEQ-TEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDA 178 (581)
T ss_pred cccccchhccccccccCCCCC-CCCHHH-HHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHH
Confidence 111122 244332 345566676788888 22 245666778889999998844 5556
Q ss_pred Hh
Q psy6065 126 LQ 127 (316)
Q Consensus 126 L~ 127 (316)
|.
T Consensus 179 l~ 180 (581)
T PHA02535 179 LL 180 (581)
T ss_pred Hh
Confidence 65
No 55
>PRK11436 biofilm-dependent modulation protein; Provisional
Probab=23.33 E-value=1.4e+02 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.481 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHHHHHh
Q psy6065 37 RLHALQKALKIDKSSDGAKMLLLKLMDWLEQE 68 (316)
Q Consensus 37 rlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~ 68 (316)
..+|+++||.......-....|+.|-.|+|..
T Consensus 16 lv~aieqglraehgavteddilmeltkwvea~ 47 (71)
T PRK11436 16 LVNAIEQGLRAEHGVVTEDDILMELTKWVEAS 47 (71)
T ss_pred HHHHHHHHhhhhcCCcchhHHHHHHHHHHHhc
Confidence 46899999977543344457899999999975
No 56
>PRK14144 heat shock protein GrpE; Provisional
Probab=23.12 E-value=4.2e+02 Score=24.47 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy6065 88 IENYALKLFQWADSMDRA 105 (316)
Q Consensus 88 venfAlklF~~AD~~dRa 105 (316)
+++|+..|+.-.|+-+|+
T Consensus 94 ~~~~~~~LLpV~DnLerA 111 (199)
T PRK14144 94 VEKLISALLPVVDSLEQA 111 (199)
T ss_pred HHHHHHHHhhHHhHHHHH
Confidence 455555555555555554
No 57
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=23.08 E-value=4.5e+02 Score=22.09 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhhhhhccc
Q psy6065 57 LLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRAST 107 (316)
Q Consensus 57 fl~~LLd~LE~~K~~l~~~eai~~e~~a~ayvenfAlklF~~AD~~dRag~ 107 (316)
-...+....|.+++....+ .+..-..-+++|+.+|..-.|+-+|+-.
T Consensus 7 ~~~r~~ae~~N~rkr~~~e----~~~~~~~~~~~~~~~ll~v~D~le~a~~ 53 (137)
T cd00446 7 KLLRALAEFENYRKRTERE----REEARKYAIEKFAKDLLPVLDNLERALE 53 (137)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666554432 1112233477777777777777777643
No 58
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=23.05 E-value=2e+02 Score=21.75 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhHHHhhcC-CCCHHHHHHHHHHHHHHhh--cCC
Q psy6065 274 AELINKCQKYIKFASSALN-YDDYKEAKSNLIKVLNILN--TGR 314 (316)
Q Consensus 274 ~~~~~~aqK~~K~A~SAL~-yeDv~tAi~nL~kAL~lL~--tg~ 314 (316)
-+.+.+|-++..-|..+++ ..+..-+...|+.|+..|. ||.
T Consensus 15 ~~~L~~a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~ 58 (73)
T PF12631_consen 15 RQLLEQALEHLEDALEALENGLPLDLVAEDLREALESLGEITGE 58 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456788888888888887 6678888999999999987 664
No 59
>KOG0777|consensus
Probab=22.81 E-value=3e+02 Score=26.61 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhhhhhcccccHHH
Q psy6065 42 QKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNV 112 (316)
Q Consensus 42 q~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~eai~~e~~a~ayvenfAlklF~~AD~~dRag~~~k~~ 112 (316)
..+|...+.+.+++.+++.+|+.+- ..+|-.||...|-+.|-++..+-.-++-+
T Consensus 242 l~ILrqRT~didiKkyci~~LEd~g-----------------Sf~YTrn~l~~L~a~a~~~i~~~g~Npyl 295 (322)
T KOG0777|consen 242 LRILRQRTSDIDIKKYCIQILEDTG-----------------SFAYTRNFLNQLVAEARSMIKNDGENPYL 295 (322)
T ss_pred HHHHHHhhccchHHHHHHHHHHHcc-----------------cHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 3455555566777777666654332 45677788877777777665544444433
No 60
>PRK14151 heat shock protein GrpE; Provisional
Probab=22.02 E-value=4.2e+02 Score=23.86 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy6065 88 IENYALKLFQWADSMDRA 105 (316)
Q Consensus 88 venfAlklF~~AD~~dRa 105 (316)
+++|+..|+.-.|+-+|+
T Consensus 69 ~~~~~~~LLpv~DnlerA 86 (176)
T PRK14151 69 LEKFAGDLLPVVDSLERG 86 (176)
T ss_pred HHHHHHHHhhHHhHHHHH
Confidence 556666666666655555
No 61
>PRK14145 heat shock protein GrpE; Provisional
Probab=22.00 E-value=4.4e+02 Score=24.24 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy6065 88 IENYALKLFQWADSMDRA 105 (316)
Q Consensus 88 venfAlklF~~AD~~dRa 105 (316)
+++|+..|+.-.|+-+|+
T Consensus 94 ~e~~~~~LLpV~DnLerA 111 (196)
T PRK14145 94 KEQVILELLPVMDNFERA 111 (196)
T ss_pred HHHHHHHHHhHHhHHHHH
Confidence 555555555555555555
No 62
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.70 E-value=3.3e+02 Score=24.79 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhhhc
Q psy6065 88 IENYALKLFQWADSMDRA 105 (316)
Q Consensus 88 venfAlklF~~AD~~dRa 105 (316)
+++|+..|+.-.|+-+|+
T Consensus 81 ~~~~~~~LLpv~DnLerA 98 (185)
T PRK14139 81 IESFAESLLPVKDSLEAA 98 (185)
T ss_pred HHHHHHHHhhHHhHHHHH
Confidence 555555555555555555
No 63
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=21.15 E-value=3.6e+02 Score=26.24 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHH
Q psy6065 274 AELINKCQKYIKFASSALNYDDYKEAKSNLIKVLN 308 (316)
Q Consensus 274 ~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~ 308 (316)
.+-|==.+|..+.|+|.-+.+=+...+.++-+.|.
T Consensus 284 DDvffil~k~l~RalsTg~~~~v~a~in~~~~iL~ 318 (331)
T PF08318_consen 284 DDVFFILRKVLRRALSTGSIDTVCAVINHLVRILQ 318 (331)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 56778899999999999999988888888777664
No 64
>KOG3814|consensus
Probab=20.96 E-value=1.1e+02 Score=31.56 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHH
Q psy6065 29 DLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDW 64 (316)
Q Consensus 29 dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~ 64 (316)
--++|||. ||.|+..-.-...=+.+.+|.+.|+|.
T Consensus 200 ~~~fayWL-FYiVri~~~r~~nYk~iV~yatslvDa 234 (531)
T KOG3814|consen 200 LIVFAYWL-FYIVRILDERYRNYKGIVQYATSLVDA 234 (531)
T ss_pred HHHHHHHH-HHhhhhhcccchhhHHHHHHHHHHHHH
Confidence 34678885 666654333223447788899999885
No 65
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.86 E-value=1.3e+02 Score=28.05 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=29.8
Q ss_pred HHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy6065 278 NKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN 311 (316)
Q Consensus 278 ~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~ 311 (316)
-+.-++|++|+.++.=-|...|.+.|+||-.++.
T Consensus 27 Rei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~ 60 (204)
T COG2178 27 REIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVE 60 (204)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999987765
No 66
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.50 E-value=5e+02 Score=23.61 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q psy6065 87 YIENYALKLFQWADSMDRA 105 (316)
Q Consensus 87 yvenfAlklF~~AD~~dRa 105 (316)
-+++|+..|..-.|+-+|+
T Consensus 84 a~e~~~~dlLpviDnlerA 102 (193)
T COG0576 84 AIEKFAKDLLPVIDNLERA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666
No 67
>PF06760 DUF1221: Protein of unknown function (DUF1221); InterPro: IPR010632 This is a group of plant proteins, most of which are hypothetical and of unknown function. All members contain the IPR000719 from INTERPRO domain, suggesting that they may possess kinase activity.
Probab=20.42 E-value=46 Score=30.84 Aligned_cols=45 Identities=29% Similarity=0.578 Sum_probs=31.8
Q ss_pred HHHHHHHHhh-hcCCcHHHHHHH----HHHHHHHH-----HHHHHHhcCCCCCCC
Q psy6065 119 ASILMDVLQT-FGETSEDIEQNK----KYAKWKAA-----YIHNCLKSGETPIPG 163 (316)
Q Consensus 119 As~L~dVL~~-Fgel~ee~~~k~----KYAKwkA~-----~I~k~lk~Ge~P~pg 163 (316)
|..|+|++.. |.-..+|+.++. |-.|||+. +||+.+|+||-.+--
T Consensus 11 C~LL~d~f~~A~~~va~eir~nLrfeEk~tKWr~LE~PLREl~rvfregE~YvR~ 65 (217)
T PF06760_consen 11 CCLLADIFALAFDTVAEEIRQNLRFEEKNTKWRPLEQPLRELHRVFREGEGYVRH 65 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHhhcCcccccchhHHHHHHHHhhhHHHHHH
Confidence 4556776554 566777777755 45789984 699999999866543
No 68
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=20.23 E-value=61 Score=26.59 Aligned_cols=13 Identities=62% Similarity=1.232 Sum_probs=11.8
Q ss_pred HHHHHHhcCCCCC
Q psy6065 149 YIHNCLKSGETPI 161 (316)
Q Consensus 149 ~I~k~lk~Ge~P~ 161 (316)
||++||++|+.|.
T Consensus 88 yIr~cl~~~~~~~ 100 (108)
T smart00144 88 YIRNCLKNGREPH 100 (108)
T ss_pred HHHHHHhcCCCce
Confidence 8999999999884
Done!