Query psy6065
Match_columns 316
No_of_seqs 162 out of 292
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 16:45:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 100.0 7.8E-65 2.7E-69 452.6 19.0 171 1-171 1-173 (183)
2 2rkk_A Vacuolar protein sortin 100.0 1.4E-49 4.8E-54 349.0 16.7 140 13-152 4-164 (168)
3 2rkl_A Vacuolar protein sortin 99.8 1.7E-19 5.9E-24 129.8 4.5 42 271-312 11-52 (53)
4 1yzm_A FYVE-finger-containing 67.1 4.2 0.00014 28.7 2.9 33 272-304 6-38 (51)
5 1z0k_B FYVE-finger-containing 65.2 4.8 0.00016 30.1 3.1 34 271-304 23-56 (69)
6 1wfd_A Hypothetical protein 15 55.8 53 0.0018 25.1 7.8 67 88-156 11-81 (93)
7 3v1a_A Computational design, M 54.0 10 0.00036 26.3 3.0 33 273-305 6-38 (48)
8 2v6y_A AAA family ATPase, P60 51.9 53 0.0018 24.6 7.1 67 88-154 7-75 (83)
9 1z0j_B FYVE-finger-containing 49.5 12 0.00041 27.1 2.8 41 272-312 13-56 (59)
10 1hji_B NUN-protein; bacterioph 49.3 19 0.00063 21.5 3.1 20 137-157 7-26 (26)
11 2cpt_A SKD1 protein, vacuolar 45.8 1.1E+02 0.0039 24.3 9.7 68 88-156 14-85 (117)
12 3iqc_A FLIS, flagellar protein 39.6 30 0.001 28.3 4.3 41 271-311 27-67 (131)
13 1vh6_A Flagellar protein FLIS; 36.0 32 0.0011 28.7 3.9 41 271-311 24-64 (145)
14 2l6j_A TPR repeat-containing p 34.1 35 0.0012 23.9 3.4 29 281-309 5-33 (111)
15 1elw_A TPR1-domain of HOP; HOP 32.2 36 0.0012 23.7 3.2 28 281-308 5-32 (118)
16 2cpt_A SKD1 protein, vacuolar 30.8 1.1E+02 0.0037 24.5 6.1 61 12-72 15-83 (117)
17 2w2u_A Hypothetical P60 katani 30.5 49 0.0017 24.9 3.8 40 273-312 12-51 (83)
18 2xze_A STAM-binding protein; h 30.4 92 0.0032 25.8 5.8 59 15-73 33-111 (146)
19 1taf_A TFIID TBP associated fa 29.5 18 0.00061 26.7 1.1 32 271-302 33-65 (68)
20 4a5x_A MITD1, MIT domain-conta 27.8 62 0.0021 24.5 4.0 37 276-312 12-48 (86)
21 1orj_A Flagellar protein FLIS; 27.5 53 0.0018 26.8 3.8 41 271-311 20-64 (130)
22 2v6x_A Vacuolar protein sortin 27.4 1.8E+02 0.0063 21.3 7.8 66 88-155 9-78 (85)
23 2v6y_A AAA family ATPase, P60 26.5 76 0.0026 23.7 4.2 36 277-312 8-43 (83)
24 2w2u_A Hypothetical P60 katani 23.5 2.3E+02 0.0079 21.1 7.8 42 88-129 15-56 (83)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=100.00 E-value=7.8e-65 Score=452.58 Aligned_cols=171 Identities=51% Similarity=0.855 Sum_probs=158.7
Q ss_pred CCC--CCCCCCCchhhhHHHHHHHhhcccCCchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcchh
Q psy6065 1 MAI--QLPPCPDSLKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTI 78 (316)
Q Consensus 1 m~~--~l~~vP~~LK~I~p~Lk~A~Ele~~dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~eai 78 (316)
|+. +||+||++||+|.|||+||+||++++|+|||||||||+|+||+++++++|+++|++.|||+||++|++++++|++
T Consensus 1 ~~~~~~l~~vP~~LK~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~~~~e~~~f~~~LLd~LE~~K~~~~~~dai 80 (183)
T 2lxl_A 1 MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAI 80 (183)
T ss_dssp CCCCCCCCCCCGGGSSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCSCCTTHHHHHHHHHHHHHHHHHHHCSCHHH
T ss_pred CCCCCCCCCCChhHHhHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHhccchhHH
Confidence 553 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy6065 79 MNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGE 158 (316)
Q Consensus 79 ~~e~~a~ayvenfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee~~~k~KYAKwkA~~I~k~lk~Ge 158 (316)
+|++++++|||+||++||++||++||+|+++++|+++||||++|||||++||+|++|+.+|+|||||||+||+||||+|+
T Consensus 81 ~~~~~~~ayve~fAlklF~~Ad~~dRa~~~t~~~~k~F~aA~~f~eVL~~fg~l~~e~~~k~KYAKwkA~~I~kalk~G~ 160 (183)
T 2lxl_A 81 TQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGE 160 (183)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHCCCCHHHHHhHHHHHHhHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCC
Q psy6065 159 TPIPGPPESGEGS 171 (316)
Q Consensus 159 ~P~pgp~~~~~~~ 171 (316)
+|+|||++++++.
T Consensus 161 ~P~pgp~~~~~~~ 173 (183)
T 2lxl_A 161 TPQAGPVGIEEDN 173 (183)
T ss_dssp CCC----------
T ss_pred CCCCCCCCCcccc
Confidence 9999999877764
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-49 Score=349.01 Aligned_cols=140 Identities=16% Similarity=0.268 Sum_probs=131.9
Q ss_pred hhhHHHHHHHhhcccC-CchHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHHHHhhhhcCCcch--------------
Q psy6065 13 KAIQHFLNVASEHDNR-DLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDT-------------- 77 (316)
Q Consensus 13 K~I~p~Lk~A~Ele~~-dPvVAYyCrlYAlq~~lkl~~~~~E~~~fl~~LLd~LE~~K~~l~~~ea-------------- 77 (316)
++|.|||+||.||+++ +|+|||||||||||+||+++++++|++.|++.|||+||++|++++++|+
T Consensus 4 ~~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~~~~s~e~~~~l~~LlD~LE~~K~~~~~~e~~~~~~~~~~~~~~~ 83 (168)
T 2rkk_A 4 SNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEEDRSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMNTL 83 (168)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHTTC-----------CTTTTHH
T ss_pred chHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccccchhhhhhh
Confidence 4699999999999999 9999999999999999999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhcccccHHHHHHHHH-HHHHHHHHhhhcCCc-----HHHHHHHHHHHHHHHHHH
Q psy6065 78 IMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYT-ASILMDVLQTFGETS-----EDIEQNKKYAKWKAAYIH 151 (316)
Q Consensus 78 i~~e~~a~ayvenfAlklF~~AD~~dRag~~~k~~~k~F~a-As~L~dVL~~Fgel~-----ee~~~k~KYAKwkA~~I~ 151 (316)
|+|++++++|||||||+||++||++||+|++|++++|+||| |.+|++||++||+++ +|+.+|+|||||||+||+
T Consensus 84 i~d~~~a~a~ve~FAlklF~~Ad~~drag~~~k~~~k~fy~ta~~F~avl~~fg~~~~~~~~~e~~~k~KYaKw~aa~I~ 163 (168)
T 2rkk_A 84 IHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSKLA 163 (168)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 666778999999999 999999999999999999
Q ss_pred H
Q psy6065 152 N 152 (316)
Q Consensus 152 k 152 (316)
|
T Consensus 164 K 164 (168)
T 2rkk_A 164 K 164 (168)
T ss_dssp T
T ss_pred H
Confidence 9
No 3
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=99.77 E-value=1.7e-19 Score=129.81 Aligned_cols=42 Identities=45% Similarity=0.597 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
.+++++|++||||||||+|||+||||+|||+||++||+||++
T Consensus 11 ~~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~~ 52 (53)
T 2rkl_A 11 MDRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLNS 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999975
No 4
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=67.11 E-value=4.2 Score=28.71 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHH
Q psy6065 272 IEAELINKCQKYIKFASSALNYDDYKEAKSNLI 304 (316)
Q Consensus 272 lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~ 304 (316)
+--+|+.-.++|.|-|.++-.||+|.|=-.||.
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLr 38 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLR 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 447899999999999999999999999877764
No 5
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=65.20 E-value=4.8 Score=30.10 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHH
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLI 304 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~ 304 (316)
.+--+|+.-.++|+|-|.++..||+|.|=-.||.
T Consensus 23 dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLr 56 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLR 56 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4458999999999999999999999999877764
No 6
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=55.78 E-value=53 Score=25.11 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHH----HHHHHHHHHHHHHHHHHHHhc
Q psy6065 88 IENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSED----IEQNKKYAKWKAAYIHNCLKS 156 (316)
Q Consensus 88 venfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee----~~~k~KYAKwkA~~I~k~lk~ 156 (316)
+++-|..++..|-..|++|++...+.---.++..|+.+|+.-. ++. +.+|.+=.-=||-.|++.|.+
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~--~~~~k~~l~~K~~eYl~RAE~LK~~l~~ 81 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK--ESSKRCVLRTKISGYMDRAENIKKYLDQ 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6678899999999999999998877765555566666766432 332 222333223366777776643
No 7
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=53.98 E-value=10 Score=26.34 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHH
Q psy6065 273 EAELINKCQKYIKFASSALNYDDYKEAKSNLIK 305 (316)
Q Consensus 273 t~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~k 305 (316)
=.+|+.-.+.|.+.|..|-.||+|.|=-.||..
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~E 38 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQ 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 378999999999999999999999998888764
No 8
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=51.89 E-value=53 Score=24.55 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHHHHH
Q psy6065 88 IENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGE--TSEDIEQNKKYAKWKAAYIHNCL 154 (316)
Q Consensus 88 venfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fge--l~ee~~~k~KYAKwkA~~I~k~l 154 (316)
+++-|..++.+|-..|++|++...+.-=-.+...|+.+|+.-.+ .-+-+.+|..=..=||-.|++.|
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66788899999999999999988776644444445556654322 22233334333333556665554
No 9
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=49.48 E-value=12 Score=27.13 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHH---HHHHHhhc
Q psy6065 272 IEAELINKCQKYIKFASSALNYDDYKEAKSNLI---KVLNILNT 312 (316)
Q Consensus 272 lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~---kAL~lL~t 312 (316)
+--+|+.-.++|.|-|.++-.||.|.+=-.||. .-+..++.
T Consensus 13 pL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~~ 56 (59)
T 1z0j_B 13 LLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 447899999999999999999999998777654 44444443
No 10
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=49.25 E-value=19 Score=21.47 Aligned_cols=20 Identities=30% Similarity=0.694 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q psy6065 137 EQNKKYAKWKAAYIHNCLKSG 157 (316)
Q Consensus 137 ~~k~KYAKwkA~~I~k~lk~G 157 (316)
..+++.|+|. .+|.-+||||
T Consensus 7 rdrrriarwe-kriayalkng 26 (26)
T 1hji_B 7 RDRRRIARWE-KRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHH-HHHHHHHHCC
T ss_pred hhHHHHHHHH-HHHHHHHhcC
Confidence 4678999998 7888889987
No 11
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=45.84 E-value=1.1e+02 Score=24.34 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHH----HHHHHHHHHHHHHHHHHHHhc
Q psy6065 88 IENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSED----IEQNKKYAKWKAAYIHNCLKS 156 (316)
Q Consensus 88 venfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee----~~~k~KYAKwkA~~I~k~lk~ 156 (316)
+++-|..|+..|-..|++|++...+.---.++..|+.+|+.-. .++. +.+|.+=.-=||-.|+.-|.+
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~-~~~~~k~~lr~K~~eYl~RAE~LK~~l~~ 85 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEA-QGDKAKQSIRAKCTEYLDRAEKLKEYLKN 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788888999999999888777664455555666666431 2332 233333333367777776743
No 12
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=39.64 E-value=30 Score=28.28 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN 311 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~ 311 (316)
+|..=-+..|-++++.|.-|++=.|+.....++.||..++.
T Consensus 27 ~Li~mLydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~ 67 (131)
T 3iqc_A 27 KLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFT 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55566679999999999999999999999999999999885
No 13
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=36.01 E-value=32 Score=28.74 Aligned_cols=41 Identities=37% Similarity=0.605 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN 311 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~ 311 (316)
+|..=-+..|-++++.|.-|++=.|+..+-.+|.||..++.
T Consensus 24 ~Li~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~ 64 (145)
T 1vh6_A 24 ELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQ 64 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 66777889999999999999999999999999999999984
No 14
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=34.13 E-value=35 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=13.9
Q ss_pred HHHhhHHHhhcCCCCHHHHHHHHHHHHHH
Q psy6065 281 QKYIKFASSALNYDDYKEAKSNLIKVLNI 309 (316)
Q Consensus 281 qK~~K~A~SAL~yeDv~tAi~nL~kAL~l 309 (316)
+.+...|...+.-.|...|++.+++||++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA 33 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34444444444444555555555555443
No 15
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=32.21 E-value=36 Score=23.65 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=12.6
Q ss_pred HHHhhHHHhhcCCCCHHHHHHHHHHHHH
Q psy6065 281 QKYIKFASSALNYDDYKEAKSNLIKVLN 308 (316)
Q Consensus 281 qK~~K~A~SAL~yeDv~tAi~nL~kAL~ 308 (316)
..+...|...+.-.|...|+..|++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 32 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK 32 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 16
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.82 E-value=1.1e+02 Score=24.47 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=40.1
Q ss_pred hhhhHHHHHHHhhccc-CCchHHHHHHHHHHHHHhh---hcCCChh----HHHHHHHHHHHHHHhhhhc
Q psy6065 12 LKAIQHFLNVASEHDN-RDLTVSYWCRLHALQKALK---IDKSSDG----AKMLLLKLMDWLEQEKKTH 72 (316)
Q Consensus 12 LK~I~p~Lk~A~Ele~-~dPvVAYyCrlYAlq~~lk---l~~~~~E----~~~fl~~LLd~LE~~K~~l 72 (316)
|..-..++++|.+.+. .+---|+.|-.-|++..|. ....+.. ++.-....|++.|++|..+
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l 83 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYL 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444568889988876 4555666666678887554 3323444 4556677888888888754
No 17
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=30.53 E-value=49 Score=24.90 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 273 EAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 273 t~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
+.+-+.+|..+++-|+..=+=.+...|+..++.||.+|..
T Consensus 12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 51 (83)
T 2w2u_A 12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4566789999999998887777889999999999998863
No 18
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=30.35 E-value=92 Score=25.79 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=39.6
Q ss_pred hHHHHHHHhhcc--------cCCchHHHHHHHHHHHHHh-hh--c--CC---ChhHHHHHHHH----HHHHHHhhhhcC
Q psy6065 15 IQHFLNVASEHD--------NRDLTVSYWCRLHALQKAL-KI--D--KS---SDGAKMLLLKL----MDWLEQEKKTHR 73 (316)
Q Consensus 15 I~p~Lk~A~Ele--------~~dPvVAYyCrlYAlq~~l-kl--~--~~---~~E~~~fl~~L----Ld~LE~~K~~l~ 73 (316)
|..|++.|..+- .+|..-||+..+=.+...+ +| | -+ .++.+.++..| |+.||.+|.++.
T Consensus 33 l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~~l~~~~~~~lE~LK~~L~ 111 (146)
T 2xze_A 33 PRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELL 111 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 667777776653 3799999988776666665 34 2 12 26677777665 555888888774
No 19
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=29.51 E-value=18 Score=26.71 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=26.2
Q ss_pred cCCHHHHHHHHHHhhHHHh-hcCCCCHHHHHHH
Q psy6065 271 YIEAELINKCQKYIKFASS-ALNYDDYKEAKSN 302 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~S-AL~yeDv~tAi~n 302 (316)
+.+.+-..+|+.|+++|+. .++=|||..||+.
T Consensus 33 ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 33 RYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3455667899999999985 5889999999975
No 20
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=27.76 E-value=62 Score=24.46 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=31.9
Q ss_pred HHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 276 LINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 276 ~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
|-.+|..+.+-|+.+=+-.+...|+..++.|+.+|..
T Consensus 12 ~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~ 48 (86)
T 4a5x_A 12 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 48 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5678889999999988888889999999999988753
No 21
>1orj_A Flagellar protein FLIS; flagellin, flagellar export, chaperone, flagellum, four HELI; 2.25A {Aquifex aeolicus} SCOP: a.24.19.1 PDB: 1ory_A
Probab=27.54 E-value=53 Score=26.84 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCH-HHH---HHHHHHHHHHhh
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDY-KEA---KSNLIKVLNILN 311 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv-~tA---i~nL~kAL~lL~ 311 (316)
+|..=-+..|-++++.|.-|++=.|+ ... ..+|.||..++.
T Consensus 20 ~Li~mLydgai~~l~~A~~ai~~~d~~~~k~~~~~~i~KA~~Ii~ 64 (130)
T 1orj_A 20 EQIILLYDKAIECLERAIEIYDQVNELEKRKEFVENIDRVYDIIS 64 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 55666678899999999999999999 888 999999999984
No 22
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.41 E-value=1.8e+02 Score=21.29 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHH----HHHHHHHHHHHHHHHHHHHh
Q psy6065 88 IENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSED----IEQNKKYAKWKAAYIHNCLK 155 (316)
Q Consensus 88 venfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee----~~~k~KYAKwkA~~I~k~lk 155 (316)
..+-|..++..|-..|.+|++...+.---.++..|+.+++.- .++. +.+|.+=.-=||-.|..-|.
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e--~~~~~k~~l~~k~~eYl~RAE~Lk~~l~ 78 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYE--KNPKSKDLIRAKFTEYLNRAEQLKKHLE 78 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888889899999988877766445555566666543 2332 22233322335556655443
No 23
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.47 E-value=76 Score=23.68 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=30.2
Q ss_pred HHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 277 INKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 277 ~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
+.+|..+++-|+..=+=.+...|+..++.||.+|..
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~ 43 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 578888999988876666889999999999998863
No 24
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=23.49 E-value=2.3e+02 Score=21.07 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhh
Q psy6065 88 IENYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTF 129 (316)
Q Consensus 88 venfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~F 129 (316)
+++-|..++.+|-..|++|++...+.-=-.+...|+.+|+.-
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e 56 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLY 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHC
Confidence 677788999999999999999877766444444455566553
Done!