Query psy6065
Match_columns 316
No_of_seqs 162 out of 292
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 16:45:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6065.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/6065hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yzma1 a.2.19.1 (A:456-501) F 57.9 4.1 0.0003 26.5 3.1 32 274-305 5-36 (46)
2 d1wfda_ a.7.14.1 (A:) Hypothet 49.9 27 0.002 24.9 7.1 64 90-155 13-80 (93)
3 d1vh6a_ a.24.19.1 (A:) Flagell 45.6 11 0.00079 27.4 4.3 41 271-311 5-45 (102)
4 d1wr0a1 a.7.14.1 (A:5-81) Vacu 33.4 62 0.0045 21.9 6.6 64 9-72 5-76 (77)
5 d1wfda_ a.7.14.1 (A:) Hypothet 32.5 25 0.0018 25.1 4.4 38 275-312 10-47 (93)
6 d2jxca1 a.39.1.6 (A:121-215) E 26.2 33 0.0024 24.1 4.1 25 93-119 13-37 (95)
7 d1wr0a1 a.7.14.1 (A:5-81) Vacu 25.7 14 0.0011 25.5 1.8 39 274-312 5-43 (77)
8 d2jdih1 a.2.10.1 (H:102-145) E 25.2 15 0.0011 23.1 1.6 18 295-312 3-20 (44)
9 d1tjca_ a.118.8.1 (A:) Prolyl 24.6 41 0.003 22.8 4.3 31 283-313 8-38 (95)
10 d1z1va1 a.60.1.2 (A:33-102) St 19.1 34 0.0025 23.6 2.6 25 281-305 6-30 (70)
No 1
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.87 E-value=4.1 Score=26.50 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHH
Q psy6065 274 AELINKCQKYIKFASSALNYDDYKEAKSNLIK 305 (316)
Q Consensus 274 ~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~k 305 (316)
-+||.-.+.|.|.|.+|..||.|.|==.||..
T Consensus 5 lqQi~~ik~yI~QAk~a~R~dEV~~Le~NLre 36 (46)
T d1yzma1 5 LQQIHNITSFIRQAKAAGRMDEVRTLQENLRQ 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 57999999999999999999999998888764
No 2
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.86 E-value=27 Score=24.92 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhhhcccccHHHHHHHHHHHHHHHHHhhhcCCcHH----HHHHHHHHHHHHHHHHHHHh
Q psy6065 90 NYALKLFQWADSMDRASTFNKNVVKAFYTASILMDVLQTFGETSED----IEQNKKYAKWKAAYIHNCLK 155 (316)
Q Consensus 90 nfAlklF~~AD~~dRag~~~k~~~k~F~aAs~L~dVL~~Fgel~ee----~~~k~KYAKwkA~~I~k~lk 155 (316)
.-|..|+..|-..|..|++...+..=-.+...|+.+++.. .+.. +.+|.+-..=||-.|.+-|.
T Consensus 13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e--~~~~~k~~l~~k~~eYl~RAE~LK~~l~ 80 (93)
T d1wfda_ 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGT--KESSKRCVLRTKISGYMDRAENIKKYLD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999999999998866554333344455566643 3333 45555555557777766443
No 3
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus subtilis [TaxId: 1423]}
Probab=45.58 E-value=11 Score=27.41 Aligned_cols=41 Identities=37% Similarity=0.605 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhh
Q psy6065 271 YIEAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILN 311 (316)
Q Consensus 271 ~lt~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~ 311 (316)
+|..--+..+.++++.|.-|++=.|.....+++.||+.++.
T Consensus 5 ~Li~mLyd~~i~~l~~a~~ai~~~d~~~~~~~~~ka~~Ii~ 45 (102)
T d1vh6a_ 5 ELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQ 45 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 44455678999999999999999999999999999999885
No 4
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.45 E-value=62 Score=21.89 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=40.8
Q ss_pred CCchhhhHHHHHHHhhccc-CCchHHHHHHHHHHHHHh---hhcCCCh----hHHHHHHHHHHHHHHhhhhc
Q psy6065 9 PDSLKAIQHFLNVASEHDN-RDLTVSYWCRLHALQKAL---KIDKSSD----GAKMLLLKLMDWLEQEKKTH 72 (316)
Q Consensus 9 P~~LK~I~p~Lk~A~Ele~-~dPvVAYyCrlYAlq~~l---kl~~~~~----E~~~fl~~LLd~LE~~K~~l 72 (316)
.+.|..=.-++++|.++|. .+=--|+.|-.-|++..+ +....+. -.+.-....|++.|.+|.-+
T Consensus 5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~RAE~LK~~l 76 (77)
T d1wr0a1 5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYL 76 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555578899999987 455666666666666644 4332222 35666778888888887643
No 5
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.48 E-value=25 Score=25.08 Aligned_cols=38 Identities=13% Similarity=0.015 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 275 ELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 275 ~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
..+.+|-.+.+-|+-.=+=.+...|+..+++||.+|-.
T Consensus 10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 47 (93)
T d1wfda_ 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ 47 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 47889999999999888888999999999999998864
No 6
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.22 E-value=33 Score=24.08 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=19.8
Q ss_pred HHHHHHHhhhhhcccccHHHHHHHHHH
Q psy6065 93 LKLFQWADSMDRASTFNKNVVKAFYTA 119 (316)
Q Consensus 93 lklF~~AD~~dRag~~~k~~~k~F~aA 119 (316)
.++|+..| ++.|..+...++.|+..
T Consensus 13 ~~~F~~~D--~~~G~i~~~el~~~l~~ 37 (95)
T d2jxca1 13 DAIFDSLS--PVNGFLSGDKVKPVLLN 37 (95)
T ss_dssp HHHHHHTC--CBTTEEEHHHHHHHHTT
T ss_pred HHHHHHhC--CCCCceeHHHHHHHHHH
Confidence 56898988 56799998888877765
No 7
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.69 E-value=14 Score=25.46 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhHHHhhcCCCCHHHHHHHHHHHHHHhhc
Q psy6065 274 AELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 274 ~~~~~~aqK~~K~A~SAL~yeDv~tAi~nL~kAL~lL~t 312 (316)
.+.+.+|-.+.+-|+.+=+=.+...|++.+..||.+|..
T Consensus 5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~ 43 (77)
T d1wr0a1 5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 43 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 457889999999998776666777899999999888753
No 8
>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.23 E-value=15 Score=23.06 Aligned_cols=18 Identities=39% Similarity=0.283 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHHhhc
Q psy6065 295 DYKEAKSNLIKVLNILNT 312 (316)
Q Consensus 295 Dv~tAi~nL~kAL~lL~t 312 (316)
|+.+|..||+||-.-|..
T Consensus 3 d~~aak~nlekaqsel~~ 20 (44)
T d2jdih1 3 DLGAAKANLEKAQSELLG 20 (44)
T ss_dssp CCSHHHHHHHHHHHHSSS
T ss_pred cHHHHHhhHHHHHHHHhc
Confidence 888999999999877753
No 9
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.62 E-value=41 Score=22.81 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=24.2
Q ss_pred HhhHHHhhcCCCCHHHHHHHHHHHHHHhhcC
Q psy6065 283 YIKFASSALNYDDYKEAKSNLIKVLNILNTG 313 (316)
Q Consensus 283 ~~K~A~SAL~yeDv~tAi~nL~kAL~lL~tg 313 (316)
+..-+..+.+=.|-..||+-|++||++....
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~ 38 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEG 38 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh
Confidence 3445667777889999999999999987654
No 10
>d1z1va1 a.60.1.2 (A:33-102) Ste50p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.09 E-value=34 Score=23.63 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=22.2
Q ss_pred HHHhhHHHhhcCCCCHHHHHHHHHH
Q psy6065 281 QKYIKFASSALNYDDYKEAKSNLIK 305 (316)
Q Consensus 281 qK~~K~A~SAL~yeDv~tAi~nL~k 305 (316)
+..|+|+++-|+-+|-.+-++||++
T Consensus 6 deVv~wc~~~L~l~~~d~l~~~lr~ 30 (70)
T d1z1va1 6 DDVITWCISTLEVEETDPLCQRLRE 30 (70)
T ss_dssp HHHHHHHHHHHCCCTTSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHH
Confidence 4568999999999999999999875
Done!