RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6065
(316 letters)
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif,
cytoplasm, endosome, lipid transport, membrane, protein
transport; 2.90A {Saccharomyces cerevisiae}
Length = 168
Score = 144 bits (363), Expect = 1e-42
Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 21/159 (13%)
Query: 13 KAIQHFLNVASEHDNRDL-TVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKT 71
+ A + D L + Y+ +L+A++ L + S L +L+D +E KK
Sbjct: 4 SNAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEEDRSQEMTALATELLDTIEAFKKE 63
Query: 72 HRDNDT--------------IMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFY 117
I ++ A+ Y+ N+ + L+ + ++ + ++ +
Sbjct: 64 IGGESEAEDSDKSLHVMNTLIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLW 123
Query: 118 TASILMDVL------QTFGETSEDIEQNKKYAKWKAAYI 150
L + ++ +++ KY K + +
Sbjct: 124 CCIDLFSCILHLWKENISETSTNSLQKRIKYCKIYLSKL 162
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization
motif, cytoplasm, endosome, lipid transport, membrane,
protein transport; 1.50A {Saccharomyces cerevisiae} PDB:
3mhv_A
Length = 53
Score = 48.5 bits (115), Expect = 3e-08
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 273 EAELINKCQKYIKFASSALNYDDYKEAKSNLIKVLNILNT 312
A I + QK K+A SALNY+D AK L K L++LN+
Sbjct: 13 RASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLNS 52
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 52.8 bits (126), Expect = 6e-08
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 157 GETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPS 216
G + SG G + +++ + + + P P P+ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVIPSASVT-SAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60
Query: 217 MPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQ 267
P + G S+ ++ GP+ P + ++ P+ P P PA
Sbjct: 61 PPDTVTGDSVLQRILRGPTGP--GTTSLAPAVRYGRQPGPEAPASAPPAAG 109
Score = 47.4 bits (112), Expect = 3e-06
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMP 218
+ + P S + L++ + +P P P T +G ++
Sbjct: 19 SHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA-PAAGNPPDTVTGDSVLQRI--- 74
Query: 219 QNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQP 265
L GP+ G P++ P + + PA A+P L P
Sbjct: 75 --LRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119
Score = 36.7 bits (84), Expect = 0.007
Identities = 16/126 (12%), Positives = 33/126 (26%), Gaps = 11/126 (8%)
Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMP 218
+P S + ++ + L P P PA + T+ +
Sbjct: 13 GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQ 72
Query: 219 QNLPGPS--------ISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEIS 270
+ L GP+ + P +PA P + P + +
Sbjct: 73 RILRGPTGPGTTSLAPAVRY---GRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129
Query: 271 YIEAEL 276
+ +
Sbjct: 130 EVSRRI 135
Score = 32.0 bits (72), Expect = 0.23
Identities = 9/58 (15%), Positives = 14/58 (24%), Gaps = 2/58 (3%)
Query: 212 PSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSS-PSTPAPQPAMPALVTQPEQE 268
+ I + F + P + P P P PA P+
Sbjct: 9 HHSSGLVPRGSHMVIPSA-SVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65
Score = 32.0 bits (72), Expect = 0.24
Identities = 13/103 (12%), Positives = 20/103 (19%), Gaps = 10/103 (9%)
Query: 160 PIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQ 219
+P P + P + + PT G T +P
Sbjct: 44 TVPDPAPPPPPAPAAG----------NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYG 93
Query: 220 NLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALV 262
PGP P P + +
Sbjct: 94 RQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRIK 136
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 42.4 bits (99), Expect = 2e-04
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 165 PESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGP 224
P GSEG SP + + T F + S G + PS + PG
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYG-LTSPSYSPSSPGY 1565
Query: 225 SISGPLIPGPSIPSFPSPAVTPSSPS----TPAPQPAMPA 260
S S +P S SP+ +P+SPS +P+ P P+
Sbjct: 1566 STSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1605
Score = 37.7 bits (87), Expect = 0.004
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 22/163 (13%)
Query: 118 TASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLS 177
+ +I++ L G + DI ++ + + + G + EG+ P
Sbjct: 1431 SENIMLGQLAPMGTGAFDIYLDQD--MLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYER 1488
Query: 178 SQNSNDQLP--------SPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNL-------- 221
S + SP + +E + P
Sbjct: 1489 SPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMS 1548
Query: 222 PGPSISGPLIPGPSIPSFPSPAVTPSSPS----TPAPQPAMPA 260
PG ++ P S SPA PSSPS +P+ P P+
Sbjct: 1549 PGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPS 1591
Score = 37.4 bits (86), Expect = 0.006
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPA--PTSSGGTLPS 213
S +P P PS S + + SP ++ +P+ P+ PTS + S
Sbjct: 1635 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1694
Query: 214 P---PSMPQNLPGPSISGPLIP--GPSIPSFP--SPAVTPSS----PSTPAPQPAMPA 260
P P+ P P P P P+ PS+ SP+ +P+S P++P+ P P+
Sbjct: 1695 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752
Score = 35.8 bits (82), Expect = 0.022
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 165 PESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPA--PTSSGGTLPSP---PSMPQ 219
P S S P+ + + SP ++ +P+ P+ PTS + SP P+ P
Sbjct: 1560 PSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPS 1619
Query: 220 NLPGPSISGPLIPG--PSIPSF--PSPAVTPSSP----STPAPQPAMPAL 261
P P P P+ PS+ SP+ +P+SP ++P+ P P+
Sbjct: 1620 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1669
Score = 34.7 bits (79), Expect = 0.049
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPA--PTSSGGTLPS 213
++P P S S G S PS P +++ PS P+ PTS + S
Sbjct: 1533 GVQSPGYTSPFSSAMSPG---YGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTS 1589
Query: 214 PPSMPQNLPGPSISGPLIPGPSIPSFP--SPAVTPSSPST----PAPQPAMPA 260
P P + P S + P + PS+ SP+ +P+SPS P+ P P+
Sbjct: 1590 PSYSPTS-PSYSPTSPS-YSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640
Score = 33.9 bits (77), Expect = 0.076
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 18/119 (15%)
Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTL---- 211
E G+ P Q+ P + +T +P+S G +
Sbjct: 1512 GSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAY 1571
Query: 212 --------PSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVT-PS-SPSTPAPQPAMPA 260
P+ PS P S P P S P+ PS + T PS SP++P+ P P+
Sbjct: 1572 MPSSPSYSPTSPSYSPTSPSYS---PTSPSYS-PTSPSYSATSPSYSPTSPSYSPTSPS 1626
Score = 31.6 bits (71), Expect = 0.39
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 162 PGPPESGEGSEGPSLSSQNSNDQLP-----SPPRENSNEDVTPSFP--APTSSGGTLPSP 214
P P S S +S + + P SP ++ +P+ P +PTS + SP
Sbjct: 1622 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681
Query: 215 ---PSMPQNLPGPSISGPLIPG--PSIPSFP--SPAVTPSSP----STPAPQPAMPA 260
P+ P P P P P+ PS+ SP+ +P+SP ++P+ P P+
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1738
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 41.8 bits (97), Expect = 2e-04
Identities = 21/108 (19%), Positives = 28/108 (25%), Gaps = 7/108 (6%)
Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLP-SPPSM 217
T G G G S + P P S P P P S+G P P
Sbjct: 275 TSSIGNVNPGSYGPGSSGTWN------PGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPG 328
Query: 218 PQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQP 265
P P G P P P + + + + +
Sbjct: 329 SAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGH 376
Score = 40.6 bits (94), Expect = 4e-04
Identities = 18/100 (18%), Positives = 24/100 (24%), Gaps = 1/100 (1%)
Query: 160 PIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQ 219
P+P +S + Q + +G SP
Sbjct: 216 PVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGT 275
Query: 220 NLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMP 259
+ G G PG S P P S T P P
Sbjct: 276 SSIGNVNPGSYGPGSSGTWNPGRP-EPGSAGTWNPGRPEP 314
Score = 38.7 bits (89), Expect = 0.002
Identities = 24/115 (20%), Positives = 32/115 (27%), Gaps = 2/115 (1%)
Query: 154 LKSGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPS 213
++ + + G P P +S +V P P SSG P
Sbjct: 238 MQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPG 297
Query: 214 PPSMPQNLPG-PSISGPLIPGPSIPSFPSPAVT-PSSPSTPAPQPAMPALVTQPE 266
P P P G P P P +P P P A +PE
Sbjct: 298 RPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPE 352
Score = 37.5 bits (86), Expect = 0.004
Identities = 20/106 (18%), Positives = 27/106 (25%), Gaps = 6/106 (5%)
Query: 156 SGETPIPGPPESGEGSEGPS-LSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSP 214
+G P + + + P S+ P P P S+G P
Sbjct: 252 GHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGR 311
Query: 215 PSMPQNLPGPSISGPLIPGPSIPSFPSPAVT-PSSPSTPAPQPAMP 259
P P P P +P P S T P P
Sbjct: 312 P----EPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEP 353
Score = 37.1 bits (85), Expect = 0.006
Identities = 23/104 (22%), Positives = 28/104 (26%), Gaps = 6/104 (5%)
Query: 157 GETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPS 216
G PG G + G + P P S P P P S+G P P
Sbjct: 268 GSPRKPGTSSIGNVNPGSYGPGSSGTWN-PGRPEPGSAGTWNPGRPEPGSAGTWNPGRPE 326
Query: 217 MPQNLPGPSISGPLIPGPSIPSFPSP-AVTPSSPSTPAPQPAMP 259
G G P P +P P S T +
Sbjct: 327 PGS--AGTWNPGR--PEPGSAGTWNPGRPEPGSAGTWNTGSSGS 366
Score = 32.5 bits (73), Expect = 0.17
Identities = 17/85 (20%), Positives = 23/85 (27%)
Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMP 218
P PG + S+ N P P + P + + P P S
Sbjct: 298 RPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAG 357
Query: 219 QNLPGPSISGPLIPGPSIPSFPSPA 243
G S S P S P+
Sbjct: 358 TWNTGSSGSSSFRPDSSGHGNIRPS 382
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 42.1 bits (98), Expect = 2e-04
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 1/109 (0%)
Query: 157 GETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPS 216
G+ P + ++ S Q+ PP+ F P
Sbjct: 17 GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH-QQIDQ 75
Query: 217 MPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQP 265
++ + + P+ P V +P QP QP
Sbjct: 76 ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQP 124
Score = 39.4 bits (91), Expect = 0.001
Identities = 13/110 (11%), Positives = 24/110 (21%)
Query: 162 PGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNL 221
+ G +G S P+ + + D + P+
Sbjct: 40 MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99
Query: 222 PGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISY 271
P G + P PS+ +P E+
Sbjct: 100 QVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPP 149
Score = 38.7 bits (89), Expect = 0.002
Identities = 8/69 (11%), Positives = 12/69 (17%)
Query: 199 PSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAM 258
A PP P + P ++PS + Q
Sbjct: 16 YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQ 75
Query: 259 PALVTQPEQ 267
Sbjct: 76 ATTSMNDMH 84
Score = 34.8 bits (79), Expect = 0.042
Identities = 11/70 (15%), Positives = 15/70 (21%), Gaps = 5/70 (7%)
Query: 198 TPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPA 257
++ MP P + P PS PA
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAA-----GMSYGQMGMPPQGAVPSMGQQQFLTPA 65
Query: 258 MPALVTQPEQ 267
L Q +Q
Sbjct: 66 QEQLHQQIDQ 75
Score = 34.4 bits (78), Expect = 0.046
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 2/92 (2%)
Query: 177 SSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPG-PSISGPLIPGPS 235
++ PP++ + ++ G PS P + + +
Sbjct: 20 ATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAV-PSMGQQQFLTPAQEQLHQQIDQATT 78
Query: 236 IPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQ 267
+ P QP +P + P Q
Sbjct: 79 SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 42.0 bits (98), Expect = 2e-04
Identities = 17/101 (16%), Positives = 28/101 (27%)
Query: 158 ETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSM 217
E I + +G P + + E + S +GG +
Sbjct: 1456 EQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGAD 1515
Query: 218 PQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAM 258
P + P SP +P+SP+ PA
Sbjct: 1516 YGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAY 1556
Score = 40.5 bits (94), Expect = 6e-04
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSP-PRENSNEDVTPSFPAPTSSGGTLPSP 214
P P G S G S +S + P+ P S +PS+ +PTS + SP
Sbjct: 1524 GAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1582
Query: 215 ---PSMPQNLPGPSISGPLIPGPSIPSFP----SPAVTPSS----PSTPAPQPAMPA 260
P+ P P P P S S SP+ +P+S P++P+ P P+
Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1639
Score = 39.7 bits (92), Expect = 0.001
Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 9/150 (6%)
Query: 118 TASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIPGPPESGEGSEGPSLS 177
+ ++++ + G + D+ +++ K + + G S +
Sbjct: 1425 SENVILGQMAPIGTGAFDVMIDEESLV-KYMPEQKITEIEDGQDGGVTPYSNESGLVNAD 1483
Query: 178 SQNSNDQLPSPPRENSNED-----VTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIP 232
++ + SP ++ + D T A + PG +S P
Sbjct: 1484 LDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSP-GF 1542
Query: 233 GPSIPSFP--SPAVTPSSPSTPAPQPAMPA 260
P+ P++ SPA +P+SPS P+
Sbjct: 1543 SPTSPTYSPTSPAYSPTSPSYSPTSPSYSP 1572
Score = 38.9 bits (90), Expect = 0.002
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPA---------PTS 206
S +P P PS S + + SP ++ +P+ P+ PTS
Sbjct: 1564 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1623
Query: 207 SGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSS----PSTPAPQPAMP 259
+ SP P + S P S SPA +P+S P++P+ P P
Sbjct: 1624 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP 1680
Score = 37.8 bits (87), Expect = 0.004
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 162 PGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNL 221
P P S S +S + + PS + + T +PTS + SP P +
Sbjct: 1600 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1659
Query: 222 PGPSISGPLIPGPSIPSFPSPAVTPSS-----------PSTPAPQPAMPA 260
S P S SP+ +P+S P++P+ P P
Sbjct: 1660 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPG 1709
Score = 37.0 bits (85), Expect = 0.008
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLP-SPPRENSNEDVTPSFPA--PTS------ 206
S + G G G + S + + P SP S+ +P+ P PTS
Sbjct: 1500 SNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPT 1559
Query: 207 SGGTLPSPPSMPQNLPGPSISGPLI-PGPSIPSFPSPAVTPSSPSTPAPQPAM 258
S P+ PS P S + P P S SP+ +P+SPS P+
Sbjct: 1560 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1612
Score = 35.5 bits (81), Expect = 0.022
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPA--PTSSGGTLPS 213
S +P P PS S + + SP ++ +P+ P+ PTS + S
Sbjct: 1627 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1686
Query: 214 P---PSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMP 259
P P+ P P P PG S P SPA +P +
Sbjct: 1687 PSYSPTSPNYSPTSPSYSPTSPGYS-PG--SPAYSPKQDEQKHNENENS 1732
Score = 35.5 bits (81), Expect = 0.024
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMP 218
+P+ + + G + + SP +P F SS G P+ P+
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGV--SSPGFSPTSPTYS 1550
Query: 219 QNLPGPSISGPLIPGPSIPSFPSPAVTPSSPS 250
P S P S SP+ +P+SPS
Sbjct: 1551 PTSPAYS------PTSPSYSPTSPSYSPTSPS 1576
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 2e-04
Identities = 30/214 (14%), Positives = 59/214 (27%), Gaps = 69/214 (32%)
Query: 13 KAIQHFLNVASEHDNR----DLTV-------------SYWCR---------LHALQKALK 46
I+ LNV + R L+V W ++ L K
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 47 IDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAY---------------IENY 91
++K K + + + E K +N+ ++ + Y ++ Y
Sbjct: 417 VEKQP---KESTISIPS-IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 92 ALKLFQW-------ADSMDRASTFNK-------------NVVKAFYTASILMDVLQTFGE 131
+ + +R + F + A+ + +++ LQ
Sbjct: 473 ---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 132 TSEDIEQNK-KYAKWKAAYIHNCLKSGETPIPGP 164
I N KY + A + K E I
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Score = 29.1 bits (64), Expect = 2.7
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 22/125 (17%)
Query: 5 LPPCPDS--LKAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLM 62
+PP D I H L + L + L++ ++ D ++ A +L +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 63 DWLEQEKKTHRDNDTIMNETAAQAYIENYALKLFQWADSMDRASTFNKNVVKAFYTASIL 122
L+ K DND + + +D +N++ + YT
Sbjct: 525 QQLKFYKPYICDNDPKY-----ERLVNAI----------LDFLPKIEENLICSKYT---- 565
Query: 123 MDVLQ 127
D+L+
Sbjct: 566 -DLLR 569
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 3e-04
Identities = 63/354 (17%), Positives = 112/354 (31%), Gaps = 122/354 (34%)
Query: 28 RDLTVSYWCRLHAL----QKALK--IDKSSDGAKMLL--LKLMDWLEQEKKTHRDNDTIM 79
RDL +Y + L + L I + D K+ L +++WLE T D D ++
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP-DKDYLL 232
Query: 80 NETAAQAY-------IENY--ALKLFQW-----ADSMDRASTFNKNVVKAFYTASILMDV 125
+ + + +Y KL + + A+ ++ +V A A
Sbjct: 233 --SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE----- 285
Query: 126 LQTFGETSEDIEQN-KKYAKWKAAYI----HNCLKSGETPIPGPP--------ESGEGSE 172
++ E + +K +I + P P E+ EG
Sbjct: 286 ----TDSWESFFVSVRKAITV-LFFIGVRCYEA-----YPNTSLPPSILEDSLENNEGVP 335
Query: 173 GPSLS----SQNS--------NDQLPSPPRENSNEDVTPS-FPAPTS---SGGTLPSPPS 216
P LS +Q N LP + + V S + SG P
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLP------AGKQVEISLVNGAKNLVVSG---P---- 382
Query: 217 MPQNLPGPSISGPLIPGPS------IPSFPSPAVTPSS---PSTPAP------QPAMPAL 261
PQ+L G +++ PS IP F + S+ P +P PA
Sbjct: 383 -PQSLYGLNLTLRKAKAPSGLDQSRIP-FSERKLKFSNRFLPVA-SPFHSHLLVPASDL- 438
Query: 262 VTQPEQEISYIEAELINKCQKYIKFASSALN---YD-----DYKEAKSNLIKVL 307
I +L+ + + F + + YD D + ++ + +
Sbjct: 439 ----------INKDLV---KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Score = 38.1 bits (88), Expect = 0.004
Identities = 42/210 (20%), Positives = 67/210 (31%), Gaps = 59/210 (28%)
Query: 44 ALKIDKSSDGAKMLLLKLMDWLEQ-EKKTHRDNDTIMNETAAQAYIENYALKLFQWADSM 102
+ ++ S G +L L L + E ND I A KL Q D+
Sbjct: 69 SSLVEPSKVGQFDQVLNLC--LTEFENCYLEGND-----------IHALAAKLLQENDTT 115
Query: 103 DRASTFNKNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAYIHNCLKSGETPIP 162
+ K ++K + TA I+ + F + S A ++A G +
Sbjct: 116 LVKT---KELIKNYITARIMAK--RPFDKKSNS-------ALFRAV------GEGNAQLV 157
Query: 163 ---GPPESGEGS------E--------GPSLSS--QNSNDQLPSPPRENSNEDVTPSFPA 203
G G+G+ E + + S + L R + D F
Sbjct: 158 AIFG----GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR--TTLDAEKVFTQ 211
Query: 204 PTSSGGTLPSPPSMP--QNLPGPSISGPLI 231
+ L +P + P L IS PLI
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLI 241
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 37.3 bits (86), Expect = 0.003
Identities = 15/102 (14%), Positives = 22/102 (21%), Gaps = 4/102 (3%)
Query: 160 PIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQ 219
P+ G + P + + P +PP
Sbjct: 130 PVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM 189
Query: 220 NLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPAL 261
P G P P TP P +P P +
Sbjct: 190 GPPP----GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227
Score = 33.9 bits (77), Expect = 0.040
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 1/69 (1%)
Query: 198 TPSFPAPTSSGG-TLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQP 256
+ P G + + P+ P GP P P +P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 257 AMPALVTQP 265
M + P
Sbjct: 198 PMGPPMGIP 206
Score = 31.9 bits (72), Expect = 0.20
Identities = 12/62 (19%), Positives = 15/62 (24%)
Query: 199 PSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAM 258
P+ A G PS M G + SI P+ P
Sbjct: 124 PAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183
Query: 259 PA 260
P
Sbjct: 184 PP 185
Score = 31.5 bits (71), Expect = 0.30
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 1/75 (1%)
Query: 186 PSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAV- 244
PP +++ P A G + +P +P P L PS V
Sbjct: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
Query: 245 TPSSPSTPAPQPAMP 259
TP T A A
Sbjct: 143 TPQGRGTVAAAAAAA 157
Score = 30.8 bits (69), Expect = 0.51
Identities = 15/87 (17%), Positives = 23/87 (26%)
Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPP 215
S + P + + + +S P R + P P G P
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
Query: 216 SMPQNLPGPSISGPLIPGPSIPSFPSP 242
M + P G + P P P
Sbjct: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPP 224
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 37.5 bits (86), Expect = 0.004
Identities = 19/120 (15%), Positives = 31/120 (25%), Gaps = 6/120 (5%)
Query: 176 LSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPS 235
LS N LP+ + P P SP + P + + +
Sbjct: 9 LSDSNFMANLPNGYMTDLQRPQPPPPPPSA------ASPGATPGSAAASAERASTAAPVA 62
Query: 236 IPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDD 295
P+ PSP + + A+ S + A L D+
Sbjct: 63 SPAAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDE 122
Score = 30.6 bits (68), Expect = 0.77
Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 4/126 (3%)
Query: 171 SEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPL 230
+ P+ + P PP ++ A S+ + P P P SG
Sbjct: 16 ANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGG 75
Query: 231 IPGPSIPSF--PSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFAS 288
S+ + + A ++ S + A + + E KY F
Sbjct: 76 GFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKY--FKG 133
Query: 289 SALNYD 294
++ +
Sbjct: 134 KKIHGE 139
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 36.6 bits (84), Expect = 0.009
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 176 LSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPS 235
++ + + ++ V S +PT G + PS+ +L GP I P
Sbjct: 1 MAHHHHHHVDDDDKMFST--QVNSSLTSPTGRG--SMAAPSLHPSL-GPGIGSPGQLHSP 55
Query: 236 IPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQ 267
I + SP P + P P ++ P
Sbjct: 56 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTT 87
Score = 36.2 bits (83), Expect = 0.010
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 1/105 (0%)
Query: 162 PGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNL 221
+G GS + + SP + +S S ++ S P P ++
Sbjct: 23 SLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSM 82
Query: 222 PGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPE 266
P+ S P SP SS P + ++ P
Sbjct: 83 SVPTTPTLGFSTGS-PQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126
Score = 34.3 bits (78), Expect = 0.052
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 173 GPSLSSQNSNDQLPSPPRENS------NEDVTPSFPAPTSSGGTLP--SPPSMPQNLPGP 224
+ S N L SP S + + P +P + S P P
Sbjct: 12 DDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS 71
Query: 225 SISGPLIP-GPSIPSFPSPAVTPSSPSTPAPQPAMP 259
IS P+ P S+P+ P+ + SP +P +
Sbjct: 72 VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVS 107
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 33.4 bits (76), Expect = 0.10
Identities = 14/121 (11%), Positives = 26/121 (21%), Gaps = 15/121 (12%)
Query: 163 GPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLP 222
P G + + N P+PP + P P P+
Sbjct: 4 APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPA------ 57
Query: 223 GPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQK 282
+ + + A V P + ++ E +C
Sbjct: 58 ---------GDNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPT 108
Query: 283 Y 283
Sbjct: 109 R 109
Score = 31.9 bits (72), Expect = 0.28
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 212 PSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPA 257
P+ P+ P + + GP+ P+ P+ P+ P
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKK 47
Score = 29.5 bits (66), Expect = 1.5
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 202 PAPTSSGGTLPSPPSMPQNLPGPSISGPLIPG--PSIPSFPSPAVTPSSPSTPAPQPA 257
PA +S GT + GP+ P G P+ P P +P+ P P
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGD 59
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 32.5 bits (74), Expect = 0.18
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 197 VTPSFPAPTSSGGTLPSPPS------MPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSP 249
S ++ T+ + PS M +L IP P+IP+ P +TP S
Sbjct: 361 KDSSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLTPYSA 419
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 32.1 bits (73), Expect = 0.22
Identities = 15/100 (15%), Positives = 25/100 (25%), Gaps = 15/100 (15%)
Query: 183 DQLPSPPRENSNEDVTPSFPAPTSSG-------GTLPSPPSMPQNLPGPSISGPLIPGPS 235
QL RE +D P ++ G L G + L
Sbjct: 321 AQLTGVLREVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEI 380
Query: 236 IPSFPSPAVTPSSPST--------PAPQPAMPALVTQPEQ 267
+ + P V P+ + P + +L
Sbjct: 381 VTALSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHG 420
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 31.0 bits (70), Expect = 0.28
Identities = 7/75 (9%), Positives = 14/75 (18%), Gaps = 2/75 (2%)
Query: 193 SNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTP 252
S++ G +P + P G P+P
Sbjct: 3 SSQHHHHHSSGLVPRGSHMPQGGGYAE--PAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60
Query: 253 APQPAMPALVTQPEQ 267
+ +
Sbjct: 61 YGSAGTSVTLQLDDG 75
Score = 28.3 bits (63), Expect = 1.9
Identities = 11/77 (14%), Positives = 16/77 (20%), Gaps = 12/77 (15%)
Query: 187 SPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTP 246
+S+ V P G P+ P + PA
Sbjct: 5 QHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDY------------GQSGAPDYGQPAPGG 52
Query: 247 SSPSTPAPQPAMPALVT 263
S + VT
Sbjct: 53 YSGYGQGGYGSAGTSVT 69
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 31.6 bits (71), Expect = 0.32
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 1/100 (1%)
Query: 167 SGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSI 226
G ++ + R N E P F + P + +
Sbjct: 14 MGNRRSDEPAKTKKGLSSILDAARWNRGEPQVPDFR-HLKAEVDAEKPGATDRKGGVGMP 72
Query: 227 SGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPE 266
S G P ++ P S +P +P A + +
Sbjct: 73 SRDRNIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGD 112
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 31.0 bits (69), Expect = 0.37
Identities = 18/107 (16%), Positives = 22/107 (20%), Gaps = 3/107 (2%)
Query: 162 PGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPA-PTSSGGTLPSPPSMPQN 220
P G + G S + P + P GG P
Sbjct: 4 KRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWG 63
Query: 221 LPGPSISGPLIPGPSIPSFPSPAV--TPSSPSTPAPQPAMPALVTQP 265
P G G + PS P T A A
Sbjct: 64 QPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAV 110
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF,
tethering complex, RAB activation, GU nucleotide
exchange factor; HET: PLM; 3.70A {Saccharomyces
cerevisiae}
Length = 283
Score = 30.7 bits (68), Expect = 0.60
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 217 MPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQP----EQEIS-- 270
M Q + PS S PG S + + S + + ++ QE S
Sbjct: 1 MSQRIIQPSASDQQFPGKSDGYEYTVGPKQAITSEASTTYIPSRIYSESLLFKRQEASLS 60
Query: 271 ---YIEAELINKCQKYIKFAS 288
++ E+I++ + K A
Sbjct: 61 AMAFLFQEMISQLHRTCKTAG 81
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 31.1 bits (69), Expect = 0.62
Identities = 15/85 (17%), Positives = 27/85 (31%)
Query: 191 ENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPS 250
E + SG + S + G + + S +P+S
Sbjct: 22 EETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNE 81
Query: 251 TPAPQPAMPALVTQPEQEISYIEAE 275
+ A A +PE++ S + AE
Sbjct: 82 AATTETAEAASAAKPEEKASEVVAE 106
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 30.7 bits (68), Expect = 0.71
Identities = 9/58 (15%), Positives = 16/58 (27%)
Query: 198 TPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQ 255
S P + PS + + P+ P + + SS + P
Sbjct: 10 VRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVPTIH 67
Score = 27.6 bits (60), Expect = 5.4
Identities = 14/72 (19%), Positives = 24/72 (33%)
Query: 171 SEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPL 230
S P + + + P ++ S + S + T + + P P S S
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 231 IPGPSIPSFPSP 242
P+I SP
Sbjct: 61 FAVPTIHFKESP 72
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 30.6 bits (68), Expect = 0.72
Identities = 10/71 (14%), Positives = 17/71 (23%)
Query: 185 LPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAV 244
L + + T +P + Q +P + + S
Sbjct: 308 LYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEP 367
Query: 245 TPSSPSTPAPQ 255
P PAP
Sbjct: 368 APVEEVAPAPA 378
Score = 28.7 bits (63), Expect = 2.6
Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 179 QNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPS 238
Q N L + + + G+ P+ + P + P P+ +
Sbjct: 290 QAVNKPLYGAQMAKDYPGLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEA 349
Query: 239 FPSPAVTPSSPSTPAPQPAMPALVTQPE 266
P+ A ++ + + +PA P P
Sbjct: 350 VPAAAEPGAAEAAGSVEPA-PVEEVAPA 376
Score = 27.2 bits (59), Expect = 7.6
Identities = 9/78 (11%), Positives = 19/78 (24%), Gaps = 4/78 (5%)
Query: 168 GEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSIS 227
G + + + + E + + +P+ S+
Sbjct: 307 GLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVE 366
Query: 228 GPLIPGPSIPSFPSPAVT 245
P P P+PA
Sbjct: 367 ----PAPVEEVAPAPAAQ 380
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.6 bits (68), Expect = 0.78
Identities = 11/125 (8%), Positives = 29/125 (23%), Gaps = 1/125 (0%)
Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMP 218
T PG + P ++S + P +N++E S
Sbjct: 42 TTEPGTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDE 101
Query: 219 QNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMP-ALVTQPEQEISYIEAELI 277
+ + + ++ + ++ + + +P I
Sbjct: 102 ADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAI 161
Query: 278 NKCQK 282
Sbjct: 162 VSKHP 166
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A
{Homo sapiens} SCOP: a.118.1.20
Length = 392
Score = 30.1 bits (67), Expect = 0.88
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 227 SGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKF 286
S + G F S V ++ + P + + P + + + + +C F
Sbjct: 8 SSGVDLGTENLYFQSMVVDAANSNGPFQPVVLLHIRDVPPADQEKLFIQKLRQCCVLFDF 67
Query: 287 ASSALNYDDYKEAKSN-LIKVLNILNTGR 314
S L+ +KE K L +++ + R
Sbjct: 68 VSDPLSDLKWKEVKRAALSEMVEYITHNR 96
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 30.3 bits (67), Expect = 0.89
Identities = 10/86 (11%), Positives = 18/86 (20%), Gaps = 6/86 (6%)
Query: 171 SEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPL 230
S Q + + T S G++P P
Sbjct: 236 FYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSA------PTERTRRSE 289
Query: 231 IPGPSIPSFPSPAVTPSSPSTPAPQP 256
+ S P+ + + P
Sbjct: 290 TESVNPVSTPASVEYHAGMKSLNKAP 315
Score = 28.4 bits (62), Expect = 3.5
Identities = 8/88 (9%), Positives = 21/88 (23%)
Query: 164 PPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPG 223
+ + SP + ++ T + + S + P+ +
Sbjct: 233 LSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETES 292
Query: 224 PSISGPLIPGPSIPSFPSPAVTPSSPST 251
+ S P S ++
Sbjct: 293 VNPVSTPASVEYHAGMKSLNKAPYSSNS 320
Score = 27.6 bits (60), Expect = 5.9
Identities = 7/72 (9%), Positives = 15/72 (20%)
Query: 156 SGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPP 215
+ + ++ S +P P S+ ++
Sbjct: 247 VITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHA 306
Query: 216 SMPQNLPGPSIS 227
M P S
Sbjct: 307 GMKSLNKAPYSS 318
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 30.5 bits (67), Expect = 0.93
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 1/78 (1%)
Query: 193 SNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTP 252
VT F + P + P P+ P + A P++P
Sbjct: 2 EQRRVTDFFARRRPGPPRIAPPKLACR-TPSPARPALRAPASATSGSRKRARPPAAPGRD 60
Query: 253 APQPAMPALVTQPEQEIS 270
+P + E+S
Sbjct: 61 QARPPARRRLRLSVDEVS 78
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.5 bits (66), Expect = 1.4
Identities = 20/112 (17%), Positives = 27/112 (24%), Gaps = 3/112 (2%)
Query: 160 PIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQ 219
+ + + S+D PS E + P + P
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397
Query: 220 NLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISY 271
P P P P P P PQ A PA Q +Y
Sbjct: 398 QGYPPQGYP---PQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDNQAY 446
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 30.0 bits (66), Expect = 1.4
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 199 PSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQ 255
P++ P+++ G P + + + P I ++P P + P P+
Sbjct: 3 PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPP-PPLVIPPERMLVPSEL 58
>2b5l_C Nonstructural protein V; DDB1, SV5-V, beta propeller, propeller
cluster, zinc finger, protein binding/viral protein
complex; 2.85A {Simian virus 5} PDB: 2hye_B*
Length = 222
Score = 29.2 bits (64), Expect = 1.5
Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 7/121 (5%)
Query: 155 KSGETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSP 214
G T + + E S + Q + + P++ + T G +P+P
Sbjct: 44 PPGVTGLLTN--AAEAKIQESTNHQKGSVGGGAKPKKPRPKIAIVPADDKTVPGKPIPNP 101
Query: 215 PSMPQNLPGPSISGPLIP-----GPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEI 269
+ P L G + + + +P + T +
Sbjct: 102 LLGLDSTPSTQTVLDLSGKTLPSGSYKGVKLAKFGKENLMTRFIEEPRENPIATSSPIDF 161
Query: 270 S 270
Sbjct: 162 K 162
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 29.4 bits (67), Expect = 1.6
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 37 RLHALQKALKIDKSSDGAKMLLLKLMDWLEQEK 69
RL L+K + D+ L L++ K
Sbjct: 146 RLERLRKEARADRERLPLLEAAEGLYVHLQEGK 178
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 28.9 bits (64), Expect = 2.1
Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 7/85 (8%)
Query: 184 QLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPA 243
+LP+P + S VTP+ P + P P P+ P P P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEP-------IPEPPKEAPVVI 79
Query: 244 VTPSSPSTPAPQPAMPALVTQPEQE 268
P P P+P
Sbjct: 80 EKPKPKPKPKPKPVKKVQEQPKRDV 104
Score = 27.4 bits (60), Expect = 5.6
Identities = 21/120 (17%), Positives = 29/120 (24%), Gaps = 5/120 (4%)
Query: 158 ETPIPGPPESGEGSEGPSLSSQNSNDQLPSP-----PRENSNEDVTPSFPAPTSSGGTLP 212
E P P P S L + P P P + P P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 213 SPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYI 272
P P + P S P+ P P+ ++ A VT +
Sbjct: 87 KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRAL 146
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 28.5 bits (63), Expect = 2.2
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 163 GPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLP 222
G P + + + S R S S + SS + PS +
Sbjct: 109 GFPSTTPAKAKANAVRRVMATTSASLKRSPSASS-LSSMSSVASSVSSRPSRTGLLTETS 167
Query: 223 GPS 225
GPS
Sbjct: 168 GPS 170
Score = 28.1 bits (62), Expect = 2.5
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 195 EDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPA 253
A + S+ ++ S+S S+ S PS + S P+
Sbjct: 112 STTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETSGPS 170
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 28.5 bits (62), Expect = 2.2
Identities = 16/113 (14%), Positives = 31/113 (27%)
Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMP 218
+P P P+ + SP + V P S S+
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF 62
Query: 219 QNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISY 271
++ P IS P+ S + P++ + + A + +
Sbjct: 63 EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVV 115
Score = 28.1 bits (61), Expect = 3.7
Identities = 17/130 (13%), Positives = 29/130 (22%), Gaps = 3/130 (2%)
Query: 159 TPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVT---PSFPAPTSSGGTLPSPP 215
P P + + S S +P PP+ +++V + +
Sbjct: 15 EPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTT 74
Query: 216 SMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAE 275
G + + A +S S PA E
Sbjct: 75 PSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGR 134
Query: 276 LINKCQKYIK 285
L K
Sbjct: 135 LDLPPGFMFK 144
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 28.7 bits (64), Expect = 2.4
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 212 PSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPS-TPAPQPA 257
P P P+ P PS+ SP+ +P S TP P+P+
Sbjct: 304 PDPEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQASETPHPRPS 350
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 28.3 bits (64), Expect = 3.0
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 184 QLPSPPRENSNEDVTPSFPA-----PTSSGGTLPSPPSMPQNLPGPSISGPLIP 232
QLP P + T ++P P + G PP P I +P
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAAPRIPADRLP 56
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 224
Score = 27.9 bits (61), Expect = 3.5
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 199 PSFPAPTSSGGTLPSPPSMPQNLPGP---SISGPLIPGPSIPSFPSPAVTPSSPSTPAPQ 255
P AP+SS T P P + +L P S+S + PS+
Sbjct: 4 PLVAAPSSSSITSPIPRKLCSSLLTPSSLSLSSNPRNSLQFLNSKLFLSPPSTSHRRLSI 63
Query: 256 PAMPALVTQPEQEISYIE 273
AM + ++ I I+
Sbjct: 64 VAMAPKPGKAKKVIGVIK 81
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron
transport; HET: HEM CIT; 2.20A {Marinobacter
hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB:
1rz5_A* 1rz6_A*
Length = 326
Score = 28.4 bits (64), Expect = 3.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 237 PSFPSPAVTPSSPSTPAPQPAMP 259
P P + PS+ +TP P +P
Sbjct: 304 PEVTYPVLPPSTANTPKPVDMIP 326
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 28.5 bits (64), Expect = 3.7
Identities = 11/48 (22%), Positives = 18/48 (37%)
Query: 211 LPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAM 258
LP+ S +L P + P P + +P + S A P +
Sbjct: 529 LPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQMPVV 576
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 27.8 bits (61), Expect = 3.9
Identities = 14/66 (21%), Positives = 16/66 (24%)
Query: 157 GETPIPGPPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPS 216
SGEG GP S + R V P +G P PP
Sbjct: 159 SRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPF 218
Query: 217 MPQNLP 222
Sbjct: 219 PAGQTH 224
Score = 27.8 bits (61), Expect = 4.3
Identities = 8/80 (10%), Positives = 14/80 (17%), Gaps = 1/80 (1%)
Query: 186 PSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVT 245
P + S ++ + + G G + P
Sbjct: 146 PVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRF 205
Query: 246 PSSPSTPAPQP-AMPALVTQ 264
P P P
Sbjct: 206 PGPAGPGGPPPPFPAGQTHH 225
Score = 27.8 bits (61), Expect = 4.7
Identities = 14/74 (18%), Positives = 17/74 (22%)
Query: 177 SSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSI 236
Q + + P SS P PG G PGP+
Sbjct: 151 FLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAG 210
Query: 237 PSFPSPAVTPSSPS 250
P P P
Sbjct: 211 PGGPPPPFPAGQTH 224
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 28.3 bits (63), Expect = 4.2
Identities = 16/122 (13%), Positives = 28/122 (22%), Gaps = 24/122 (19%)
Query: 178 SQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPGPSISGPLIPGPSIP 237
+Q + +P N P + P L + + L P
Sbjct: 6 TQTDSRMQSTPGNHNH----------PDAHANAAYMTPPSMGALNANNSNSQLSTLTISP 55
Query: 238 SFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYIEAELINKCQKYIKFASSALNYDDYK 297
T + S + A + + + + AL YK
Sbjct: 56 MTYLANNTSTDGSFLKERNA-----------QNTDSLSREDYLRLWRH---DALMQQQYK 101
Query: 298 EA 299
A
Sbjct: 102 CA 103
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 26.9 bits (59), Expect = 4.9
Identities = 8/29 (27%), Positives = 9/29 (31%)
Query: 222 PGPSISGPLIPGPSIPSFPSPAVTPSSPS 250
P P P P + P SPS
Sbjct: 110 NATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
Score = 26.1 bits (57), Expect = 8.4
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 226 ISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPA 257
++ PS P+ P P P P+
Sbjct: 107 VAANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 27.3 bits (61), Expect = 6.7
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Query: 164 PPESGEGSEGPSLSSQNSNDQLPSPPRENSNEDVTPSFPAPTSSGGTLPSPPSMPQNLPG 223
P E+ + GP+ + S P+ P P S+ G+L +
Sbjct: 3 PSETPQAEVGPTSACGVSLGIPSETPQAEVGPTGCPHRSGPHSAKGSLEKGSPEDKEAKE 62
Query: 224 PSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMP 259
P P PS ++ SP P
Sbjct: 63 PLWIRP--DAPSRCTWQLGRPASESPHHHTAPAKSP 96
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 26.9 bits (59), Expect = 6.8
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 264 QPEQEISYIEAELINKCQKYIKFASSALNYDDYKEAKSNLIK 305
E + +E + + Q N DY A ++
Sbjct: 118 DDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVE 159
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide,
oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Length = 320
Score = 27.3 bits (61), Expect = 7.4
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 237 PSFPSPAVTPSSPSTPAPQPAMPA 260
P P + PS+ TP P P
Sbjct: 295 PQISLPILPPSNKETPRPVPFATG 318
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C
amphipathic-helix, apoptosis, HOST-virus interaction,
protein transport, transport; 2.02A {Homo sapiens} PDB:
2oew_A 3c3o_A 3c3q_A
Length = 380
Score = 27.1 bits (59), Expect = 7.5
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 13 KAIQHFLNVASEHDNRDLTVSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQE-KKT 71
A H +A + + RL + +K S + + D + +
Sbjct: 276 NAEYHQSILAKQQKKFGEEI---ARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAA 332
Query: 72 HRDNDTIMNET 82
+DND I ++
Sbjct: 333 KKDNDFIYHDR 343
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant;
triangular beta-sheet cluster, signaling protein; 3.10A
{Homo sapiens}
Length = 369
Score = 27.3 bits (60), Expect = 7.7
Identities = 11/58 (18%), Positives = 18/58 (31%)
Query: 215 PSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEISYI 272
+P+ P + GP G +I +TPS+ P + I
Sbjct: 284 AVVPRGSTLPLLEGPQTDGVTIGDKGESVITPSTDVKFDPGLKSKNKLNYLRNYWLLI 341
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 26.9 bits (59), Expect = 8.3
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 229 PLIPGPSIPSFPSPAVTPSSPSTPAPQPAMPALVTQPEQEIS 270
P P+P P P +Q +Q ++
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVA 46
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 27.2 bits (60), Expect = 9.8
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 9/120 (7%)
Query: 32 VSYWCRLHALQKALKIDKSSDGAKMLLLKLMDWLEQEKKTHRDNDTIMNETAAQAYIENY 91
V++ + A+ + + LE+ + + T A+
Sbjct: 703 VTFRDLERSTIDAITLFGDKNTKN-------VVLEKSYTEYMEGFTDAATGEAKRGFMTV 755
Query: 92 ALKLFQWADSMDRASTFN--KNVVKAFYTASILMDVLQTFGETSEDIEQNKKYAKWKAAY 149
+L Q + K+ VK F ++LQ + E + + A
Sbjct: 756 VSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAV 815
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.375
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,561,035
Number of extensions: 255399
Number of successful extensions: 978
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 145
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.3 bits)