RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6065
         (316 letters)



>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
           [TaxId: 5053]}
          Length = 422

 Score = 29.6 bits (66), Expect = 0.48
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 213 SPPSMPQNLPGPSISGPLIPGPSIPSFPSPAVTPSSP 249
           S  +M  +L         IP P+IP+   P +TP S 
Sbjct: 383 SATTMAADLATAFGLTASIPIPTIPTSFYPGLTPYSA 419


>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase
           {Nitrosomonas europaea [TaxId: 915]}
          Length = 158

 Score = 27.4 bits (60), Expect = 1.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 237 PSFPSPAVTPSSPSTPAPQPA 257
           P F  P + PS+  TP  QP 
Sbjct: 137 PDFKLPILPPSNNDTPRSQPY 157


>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
           isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
          Length = 153

 Score = 26.5 bits (57), Expect = 3.0
 Identities = 5/33 (15%), Positives = 15/33 (45%)

Query: 38  LHALQKALKIDKSSDGAKMLLLKLMDWLEQEKK 70
              L KA  ++ ++   +      ++ L++ +K
Sbjct: 121 KENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153


>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 193

 Score = 26.1 bits (57), Expect = 5.0
 Identities = 14/65 (21%), Positives = 17/65 (26%), Gaps = 5/65 (7%)

Query: 218 PQNLPGPSISGPLIPGPSIPSFPSPAVTPSSPS---TPAPQPAMPALVTQPEQEISYIEA 274
               P  +          +        TP  PS   T  P      L   P Q IS   A
Sbjct: 96  QTKFPIVNAELSFFGHAHLG--TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAA 153

Query: 275 ELINK 279
           E +  
Sbjct: 154 EKLFG 158


>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 169

 Score = 25.8 bits (55), Expect = 5.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 38  LHALQKALKIDKSSDGAKMLLLKLMDWLEQEKK 70
           L  L+KA +I       +  LLK+   ++ +K 
Sbjct: 131 LADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163


>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
           (Saimiri boliviensis) [TaxId: 27679]}
          Length = 168

 Score = 25.3 bits (54), Expect = 8.4
 Identities = 5/37 (13%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 38  LHALQKALKIDKSSDGAKMLL----LKLMDWLEQEKK 70
               +K L+++  +  A++ +     K  +  E++++
Sbjct: 118 KGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRR 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.128    0.375 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,124,565
Number of extensions: 50903
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 15
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.7 bits)