Query psy6066
Match_columns 370
No_of_seqs 237 out of 638
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 16:46:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00365 60S ribosomal protein 100.0 4.1E-85 9E-90 619.4 19.7 234 14-370 5-261 (266)
2 PTZ00222 60S ribosomal protein 100.0 2.3E-78 5E-83 572.3 19.1 207 32-359 21-251 (263)
3 KOG3166|consensus 100.0 2E-65 4.3E-70 472.2 9.3 199 32-361 2-209 (209)
4 PTZ00365 60S ribosomal protein 99.9 8.6E-23 1.9E-27 194.9 7.7 174 37-309 50-223 (266)
5 PTZ00222 60S ribosomal protein 99.9 6.4E-22 1.4E-26 188.6 8.3 175 37-309 48-223 (263)
6 KOG3166|consensus 99.7 8.8E-19 1.9E-23 162.9 3.4 53 178-230 95-147 (209)
7 KOG3167|consensus 99.7 6.8E-18 1.5E-22 149.0 5.2 79 262-341 58-145 (153)
8 COG1358 RPL8A Ribosomal protei 99.7 7.6E-17 1.6E-21 138.3 6.9 103 230-345 6-114 (116)
9 KOG3387|consensus 99.4 1.7E-13 3.6E-18 119.6 6.2 75 262-336 33-108 (131)
10 PRK13600 putative ribosomal pr 99.4 9.6E-13 2.1E-17 107.6 5.8 60 262-322 12-72 (84)
11 TIGR03677 rpl7ae 50S ribosomal 99.1 1.1E-10 2.3E-15 99.8 7.7 62 262-323 25-87 (117)
12 PRK04175 rpl7ae 50S ribosomal 99.1 1.2E-10 2.6E-15 100.4 7.7 61 262-322 29-90 (122)
13 PF01248 Ribosomal_L7Ae: Ribos 99.0 2.6E-10 5.7E-15 91.8 5.2 61 262-322 14-75 (95)
14 PRK13602 putative ribosomal pr 98.9 4E-09 8.8E-14 85.2 5.9 58 263-321 11-69 (82)
15 COG1358 RPL8A Ribosomal protei 98.6 3E-07 6.6E-12 79.4 8.7 70 190-283 25-94 (116)
16 PRK13601 putative L7Ae-like ri 98.5 2.5E-07 5.4E-12 75.4 6.4 59 261-320 6-65 (82)
17 PRK01018 50S ribosomal protein 98.4 4.2E-07 9.2E-12 75.7 5.7 60 262-322 15-76 (99)
18 PRK06683 hypothetical protein; 98.3 1.4E-06 3.1E-11 70.7 6.0 56 264-320 12-68 (82)
19 KOG3406|consensus 98.2 1.5E-06 3.2E-11 76.6 5.1 66 261-326 32-98 (134)
20 PRK07714 hypothetical protein; 98.0 1.8E-05 4E-10 65.6 7.5 57 263-320 18-75 (100)
21 TIGR03677 rpl7ae 50S ribosomal 97.2 0.0011 2.3E-08 57.0 6.8 71 192-286 26-97 (117)
22 PTZ00106 60S ribosomal protein 97.2 0.00066 1.4E-08 57.9 5.4 57 264-321 26-84 (108)
23 PRK04175 rpl7ae 50S ribosomal 97.2 0.0011 2.3E-08 57.5 6.6 71 192-286 30-101 (122)
24 PRK07283 hypothetical protein; 97.1 0.0023 5E-08 53.3 7.5 58 262-320 17-75 (98)
25 PF01248 Ribosomal_L7Ae: Ribos 96.6 0.0045 9.8E-08 49.9 5.4 64 192-279 15-78 (95)
26 PRK13600 putative ribosomal pr 96.1 0.013 2.7E-07 48.5 5.2 60 192-276 13-72 (84)
27 PRK05583 ribosomal protein L7A 95.9 0.02 4.3E-07 48.5 5.8 58 262-320 16-74 (104)
28 KOG3387|consensus 95.2 0.015 3.3E-07 51.7 3.0 38 193-230 35-72 (131)
29 PRK13602 putative ribosomal pr 94.9 0.064 1.4E-06 43.5 5.4 37 192-229 11-47 (82)
30 PRK09190 hypothetical protein; 93.4 0.15 3.2E-06 48.8 5.4 57 262-319 110-173 (220)
31 PRK01018 50S ribosomal protein 93.2 0.36 7.7E-06 40.4 6.8 69 192-285 16-86 (99)
32 KOG3167|consensus 92.9 0.35 7.6E-06 44.0 6.8 38 193-230 60-97 (153)
33 PRK13601 putative L7Ae-like ri 91.9 0.21 4.6E-06 40.9 3.8 35 192-227 8-42 (82)
34 COG1911 RPL30 Ribosomal protei 91.4 0.61 1.3E-05 40.1 6.1 57 264-321 20-78 (100)
35 PRK06683 hypothetical protein; 89.0 0.33 7.2E-06 39.6 2.6 30 193-222 12-41 (82)
36 PF08228 RNase_P_pop3: RNase P 88.4 1.5 3.2E-05 40.2 6.6 63 260-326 52-119 (158)
37 PTZ00106 60S ribosomal protein 86.8 0.85 1.8E-05 39.0 3.9 30 193-222 26-55 (108)
38 PRK07714 hypothetical protein; 86.0 4 8.7E-05 33.9 7.4 29 193-221 19-47 (100)
39 PF10087 DUF2325: Uncharacteri 84.5 3.5 7.7E-05 33.6 6.3 48 278-325 47-94 (97)
40 cd01422 MGS Methylglyoxal synt 78.7 6.4 0.00014 33.5 6.1 93 211-311 2-106 (115)
41 COG2452 Predicted site-specifi 75.8 12 0.00026 35.7 7.4 88 265-362 100-189 (193)
42 PRK07283 hypothetical protein; 75.2 15 0.00032 30.6 7.2 62 192-278 18-79 (98)
43 PRK05583 ribosomal protein L7A 74.2 17 0.00036 30.9 7.3 31 192-222 17-47 (104)
44 PRK09190 hypothetical protein; 71.4 46 0.001 32.1 10.4 72 192-282 111-182 (220)
45 PF08032 SpoU_sub_bind: RNA 2' 69.2 5.8 0.00012 30.2 3.2 55 264-320 1-57 (76)
46 PF03465 eRF1_3: eRF1 domain 3 61.9 13 0.00028 31.7 4.3 55 261-315 19-91 (113)
47 PRK05234 mgsA methylglyoxal sy 60.3 34 0.00074 30.5 6.8 66 267-338 63-132 (142)
48 KOG3406|consensus 57.3 8.8 0.00019 34.6 2.5 39 193-231 35-73 (134)
49 PF00391 PEP-utilizers: PEP-ut 57.1 18 0.00038 28.7 4.0 16 296-311 43-58 (80)
50 PF15608 PELOTA_1: PELOTA RNA 56.1 28 0.0006 30.1 5.2 53 260-314 36-88 (100)
51 KOG1615|consensus 54.8 21 0.00045 34.7 4.7 70 259-333 84-173 (227)
52 PF00875 DNA_photolyase: DNA p 54.4 20 0.00044 31.3 4.3 49 262-315 49-97 (165)
53 PF13727 CoA_binding_3: CoA-bi 52.1 25 0.00055 29.7 4.4 50 264-313 126-175 (175)
54 PRK08419 lipid A biosynthesis 49.0 2E+02 0.0043 27.7 10.5 111 192-312 97-229 (298)
55 PF08228 RNase_P_pop3: RNase P 48.5 18 0.0004 33.2 3.2 41 189-230 52-95 (158)
56 PRK04011 peptide chain release 47.5 48 0.001 34.4 6.4 54 262-315 295-389 (411)
57 TIGR00108 eRF peptide chain re 42.0 64 0.0014 33.5 6.3 54 262-315 291-385 (409)
58 PRK11200 grxA glutaredoxin 1; 41.0 1E+02 0.0022 24.0 6.0 53 278-331 29-83 (85)
59 PF07997 DUF1694: Protein of u 38.3 84 0.0018 27.5 5.6 48 268-316 51-98 (120)
60 cd03770 SR_TndX_transposase Se 38.2 86 0.0019 27.0 5.6 49 265-314 54-107 (140)
61 smart00851 MGS MGS-like domain 37.7 48 0.001 26.4 3.7 45 266-310 42-89 (90)
62 COG1136 SalX ABC-type antimicr 36.2 67 0.0014 31.1 5.0 37 121-157 147-186 (226)
63 COG2355 Zn-dependent dipeptida 36.1 40 0.00088 34.2 3.7 74 267-348 219-305 (313)
64 PRK06553 lipid A biosynthesis 35.7 3.4E+02 0.0074 26.5 9.9 112 191-312 116-248 (308)
65 TIGR03676 aRF1/eRF1 peptide ch 35.3 98 0.0021 32.1 6.4 28 262-289 287-314 (403)
66 cd01822 Lysophospholipase_L1_l 33.0 1.4E+02 0.003 25.3 6.0 44 268-311 90-140 (177)
67 PF00009 GTP_EFTU: Elongation 32.5 2.4E+02 0.0051 24.9 7.6 64 268-331 84-150 (188)
68 PF01514 YscJ_FliF: Secretory 32.3 2.1E+02 0.0046 26.8 7.6 84 281-368 27-122 (206)
69 PF02593 dTMP_synthase: Thymid 31.3 78 0.0017 30.6 4.6 38 279-318 51-88 (217)
70 PF01601 Corona_S2: Coronaviru 30.9 15 0.00033 40.2 -0.2 13 58-70 540-552 (610)
71 PRK06628 lipid A biosynthesis 30.8 4.2E+02 0.009 25.6 9.6 109 191-312 99-229 (290)
72 PF07905 PucR: Purine cataboli 30.0 96 0.0021 26.3 4.5 56 269-327 63-118 (123)
73 TIGR03420 DnaA_homol_Hda DnaA 30.0 1.7E+02 0.0037 26.1 6.4 72 282-353 125-202 (226)
74 cd04168 TetM_like Tet(M)-like 29.7 1.7E+02 0.0037 27.6 6.6 62 270-331 80-144 (237)
75 KOG2988|consensus 29.2 50 0.0011 29.2 2.7 28 266-293 29-56 (112)
76 cd01839 SGNH_arylesterase_like 28.4 1.6E+02 0.0034 26.2 5.8 19 293-311 156-174 (208)
77 COG1123 ATPase components of v 28.0 88 0.0019 34.1 4.8 37 121-157 159-198 (539)
78 PRK05333 NAD-dependent deacety 27.4 1.2E+02 0.0026 29.6 5.3 55 259-315 189-250 (285)
79 TIGR00111 pelota probable tran 26.4 1.7E+02 0.0037 29.7 6.3 57 261-318 275-334 (351)
80 TIGR03729 acc_ester putative p 26.3 1.4E+02 0.003 27.7 5.3 46 268-313 21-68 (239)
81 PRK08706 lipid A biosynthesis 26.2 5.9E+02 0.013 24.4 10.7 112 192-312 90-223 (289)
82 COG1116 TauB ABC-type nitrate/ 25.5 1.1E+02 0.0024 30.3 4.6 62 114-220 127-193 (248)
83 cd00532 MGS-like MGS-like doma 25.5 1.2E+02 0.0027 25.2 4.3 45 267-311 55-104 (112)
84 COG1419 FlhF Flagellar GTP-bin 24.8 2.4E+02 0.0053 29.8 7.2 39 276-314 230-268 (407)
85 PF00071 Ras: Ras family; Int 24.7 4E+02 0.0087 22.0 8.2 73 207-317 70-146 (162)
86 cd05017 SIS_PGI_PMI_1 The memb 24.4 2.2E+02 0.0047 23.6 5.6 48 274-328 65-114 (119)
87 cd01485 E1-1_like Ubiquitin ac 24.2 1.1E+02 0.0023 28.2 4.1 33 279-313 113-145 (198)
88 PF02142 MGS: MGS-like domain 24.2 1.2E+02 0.0027 24.4 4.0 41 270-310 51-94 (95)
89 cd01483 E1_enzyme_family Super 23.8 1.3E+02 0.0027 25.6 4.2 35 278-314 88-122 (143)
90 cd04165 GTPBP1_like GTPBP1-lik 23.6 3.4E+02 0.0073 25.4 7.3 38 280-317 112-150 (224)
91 PF11348 DUF3150: Protein of u 23.5 95 0.0021 30.3 3.8 43 300-342 63-115 (257)
92 COG1124 DppF ABC-type dipeptid 22.5 1.5E+02 0.0033 29.5 4.9 62 120-225 145-209 (252)
93 PF00072 Response_reg: Respons 22.5 3.6E+02 0.0078 20.6 6.4 52 264-315 28-80 (112)
94 COG0444 DppD ABC-type dipeptid 22.4 1.4E+02 0.0031 30.4 4.9 37 121-157 158-197 (316)
95 TIGR03023 WcaJ_sugtrans Undeca 22.0 1.8E+02 0.0039 29.7 5.5 50 265-314 177-226 (451)
96 cd04104 p47_IIGP_like p47 (47- 21.7 4.6E+02 0.0099 23.5 7.6 56 281-336 82-150 (197)
97 PF13167 GTP-bdg_N: GTP-bindin 21.7 98 0.0021 26.2 3.0 39 191-229 39-78 (95)
98 COG1123 ATPase components of v 21.7 1.2E+02 0.0025 33.2 4.2 38 121-158 434-474 (539)
99 TIGR02544 III_secr_YscJ type I 21.2 3.7E+02 0.0081 25.1 7.0 82 283-369 20-115 (193)
100 TIGR02314 ABC_MetN D-methionin 21.1 1.4E+02 0.0031 30.0 4.6 39 119-157 143-184 (343)
101 cd04138 H_N_K_Ras_like H-Ras/N 20.7 4.6E+02 0.01 21.3 7.1 29 297-325 127-155 (162)
102 PF13611 Peptidase_S76: Serine 20.6 1.3E+02 0.0029 26.9 3.7 47 266-315 13-59 (121)
103 PRK15174 Vi polysaccharide exp 20.3 7.9E+02 0.017 26.8 10.2 117 188-312 459-590 (656)
104 cd07388 MPP_Tt1561 Thermus the 20.2 2E+02 0.0043 27.5 5.1 46 271-317 23-74 (224)
105 cd01492 Aos1_SUMO Ubiquitin ac 20.0 1.3E+02 0.0029 27.7 3.8 33 279-313 110-142 (197)
106 PF10881 DUF2726: Protein of u 20.0 1.6E+02 0.0036 24.7 4.1 34 293-326 88-121 (126)
No 1
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=100.00 E-value=4.1e-85 Score=619.42 Aligned_cols=234 Identities=54% Similarity=0.846 Sum_probs=212.6
Q ss_pred CCCCccCCCccchhhhhhhcccCccccccccccccCccCCCccccccccccchhhhhhhhHHHHhhhhcCCCCCcccccc
Q psy6066 14 GKSKKVAPAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQA 93 (370)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~g~~i~~k~dl~rfvkwP~yir~Qrqk~il~krlKvP~~i~qf~~~ 93 (370)
.++++++|+|...++++.++++|||||+|||||||||||||+|||||||+||+||||||||+||++||||||+||||
T Consensus 5 ~~~~k~~~ap~~~~~~~~~k~~~plfe~rpknf~iG~~iqpkrdlsrfvkwP~yirlQRqk~iL~~RlKvPp~inqF--- 81 (266)
T PTZ00365 5 VKKSKKLPAPAPLKKSKKKKQKHPLFEKTPRNFRIGGDIRPKVDLSRYVRWPRYILLQRQRRVLLQRLKVPPALNQF--- 81 (266)
T ss_pred cccccccCCCccccccccccccCcccccCccccCcCCCCCCCccchhhcccchhhhHHHHHHHHHHhcCCCccHhhh---
Confidence 45677899998888878888999999999999999999999999999999999999999999999999665555555
Q ss_pred ccccccccccccccccccccchhHHHHHHHHHHHhhccCCCCCccccchhcchhhHHHHHHHhhhcCcchHHHHHHHHHH
Q psy6066 94 VDKQTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKA 173 (370)
Q Consensus 94 ld~~~~~~~~~k~dl~rfv~wPkYirIQrQraiL~~~lKipp~i~qf~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a 173 (370)
+++||++++++||+||+|||||+++||
T Consensus 82 -----------------------------------------------~~~ldk~~a~~lfkll~KYrPEtk~~k------ 108 (266)
T PTZ00365 82 -----------------------------------------------TYTLDKNQASQLLRLLSKYKPETRAEK------ 108 (266)
T ss_pred -----------------------------------------------hhhhcHhhHHHHHHHHHhcCCccHHHH------
Confidence 555566678899999999999999888
Q ss_pred HHHHHhhccCCCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCC
Q psy6066 174 RAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKK 253 (370)
Q Consensus 174 ~a~~ka~~k~~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k 253 (370)
++||+++|+++++|+
T Consensus 109 -----------------------------------------------------------------k~RL~~~A~~~a~g~ 123 (266)
T PTZ00365 109 -----------------------------------------------------------------KARLLKEAEKAAAGE 123 (266)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHhcCC
Confidence 555566666777777
Q ss_pred CCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE---------------------
Q psy6066 254 EDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV--------------------- 312 (370)
Q Consensus 254 ~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV--------------------- 312 (370)
.+. +++|.+|++|+||||++||+|+|+|||||+||||++++.|||.||++||||||||
T Consensus 124 ~~~-~kkp~~vk~Gin~VtklIekkKAkLVIIA~DVsP~t~kk~LP~LC~k~~VPY~iv~sK~eLG~AIGkktraVVAIt 202 (266)
T PTZ00365 124 EVE-SKKPFMLKYGLNHVTDLVEYKKAKLVVIAHDVDPIELVCFLPALCRKKEVPYCIIKGKSRLGKLVHQKTAAVVAID 202 (266)
T ss_pred CCC-CCCchHHHhhhHHHHHHHHhCCccEEEEeCCCCHHHHHHHHHHHHhccCCCEEEECCHHHHHHHhCCCCceEEEec
Confidence 654 7899999999999999999999999999999999999999999999999999999
Q ss_pred --ccccHHHHHHHHHHHhhhhhhhHHHHhhhhCCCCCCcchHHHHHHHHHHHHhHHhhcC
Q psy6066 313 --DSSDKANLAKLIESVKVNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAKAKELAQKV 370 (370)
Q Consensus 313 --~SeDkg~lakLve~ir~nynD~ydEi~~~wGG~ilg~ks~~~~~~~~~~~~~~~~~~~ 370 (370)
++||+++|++||+++++|||| |||+++|||||+||.||+++++++|+++++|+|+++
T Consensus 203 dV~~EDk~~l~~lv~~~~~~~nd-~~e~rr~wGG~~~g~ks~~~~~k~~k~~~~e~~~k~ 261 (266)
T PTZ00365 203 NVRKEDQAEFDNLCKNFRAMFND-NSELRRRWGGGIMGIKSQHVIAKREKLIAMENAKKL 261 (266)
T ss_pred ccCHHHHHHHHHHHHHHHHhccc-cHhhhhhcCCCccChhHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999 999999999999999999999999999999999874
No 2
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=100.00 E-value=2.3e-78 Score=572.31 Aligned_cols=207 Identities=46% Similarity=0.807 Sum_probs=187.1
Q ss_pred hcccCccccccccccccCccCCCccccccccccchhhhhhhhHHHHhhhhcCCCCCcccccccccccccccccccccccc
Q psy6066 32 KKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRF 111 (370)
Q Consensus 32 ~~~~~~l~~~~~~~f~~g~~i~~k~dl~rfvkwP~yir~Qrqk~il~krlKvP~~i~qf~~~ld~~~~~~~~~k~dl~rf 111 (370)
+....||||+|||||||||||||+|||||||+||+||||||||+||++||||||+||||
T Consensus 21 ~~~~~~lfe~rpknf~ig~di~pkrdlsrfvkwP~yirlQrqk~iL~~rlKvPp~inqF--------------------- 79 (263)
T PTZ00222 21 KPAAASHFVARPKNFGIGQDVPYARDLSRFMRWPTFVTMQRKKRVLQRRLKVPPALNQF--------------------- 79 (263)
T ss_pred CCCcchhhhcCccccCCCCCCCCCccchhhhcchhhhhHHHHHHHHHHhcCCCchHhhh---------------------
Confidence 45678999999999999999999999999999999999999999999999665555555
Q ss_pred ccchhHHHHHHHHHHHhhccCCCCCccccchhcchhhHHHHHHHhhhcCcchHHHHHHHHHHHHHHHhhccCCCCCCCCc
Q psy6066 112 VKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPN 191 (370)
Q Consensus 112 v~wPkYirIQrQraiL~~~lKipp~i~qf~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a~a~~ka~~k~~~~~kkp~ 191 (370)
+++||++++++||+||+|||||+++||
T Consensus 80 -----------------------------~~~ldk~~a~~lfkll~KYrPEtk~~k------------------------ 106 (263)
T PTZ00222 80 -----------------------------TKVLDRSSRNELLKLIKKYAPETRKAR------------------------ 106 (263)
T ss_pred -----------------------------hhhhhHhhHHHHHHHHHHcCCccHHHH------------------------
Confidence 555566678899999999999999888
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCC-CCCcccccchhH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPT-KKPNQIKQGTNT 270 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~-kkp~~Lk~Gine 270 (370)
++||+++|+++++|+.+.++ ++|.+|++|+++
T Consensus 107 -----------------------------------------------k~Rl~~~A~~~~~g~~~~~~~kkp~~LvsG~n~ 139 (263)
T PTZ00222 107 -----------------------------------------------RDRLHKVAEEKKKDPKKTVSTKAPLAVVTGLQE 139 (263)
T ss_pred -----------------------------------------------HHHHHHHHHHHhcCCCCCCCCCCCCeeccCHHH
Confidence 55555566666777776666 899999999999
Q ss_pred HHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE-----------------------ccccHHHHHHHHHHH
Q psy6066 271 VTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-----------------------DSSDKANLAKLIESV 327 (370)
Q Consensus 271 VtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-----------------------~SeDkg~lakLve~i 327 (370)
|+++||+|+|+|||||+||||+|+++|||+||++|||||||| ++||.++|++||+++
T Consensus 140 VtkaIekkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktKaeLG~AIGkKtravVAItD~g~ed~~~l~~lv~~~ 219 (263)
T PTZ00222 140 VTRAIEKKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDMARLGDAIGRKTATCVAITDVNAEDEAALKNLIRSV 219 (263)
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHCCCCCeEEEEeeCCcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 678999999999999
Q ss_pred hhhhhhhHHHHhhhhCCCCCCcchHHHHHHHH
Q psy6066 328 KVNFTDRYDEIRRQWGGGSLGSKSAARIAKLE 359 (370)
Q Consensus 328 r~nynD~ydEi~~~wGG~ilg~ks~~~~~~~~ 359 (370)
++||||+|||+++|||||+||.||+++++++.
T Consensus 220 ~~~~nd~~~e~rr~wGGg~~g~ks~~~~~k~~ 251 (263)
T PTZ00222 220 NARFLSRSDVIRRQWGGLQLSLRSRAELRKKH 251 (263)
T ss_pred HHhhccchHHHHhhccCCccCHHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 3
>KOG3166|consensus
Probab=100.00 E-value=2e-65 Score=472.15 Aligned_cols=199 Identities=66% Similarity=1.042 Sum_probs=175.0
Q ss_pred hcccCccccccccccccCccCCCccccccccccchhhhhhhhHHHHhhhhcCCCCCcccccccccccccccccccccccc
Q psy6066 32 KKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRF 111 (370)
Q Consensus 32 ~~~~~~l~~~~~~~f~~g~~i~~k~dl~rfvkwP~yir~Qrqk~il~krlKvP~~i~qf~~~ld~~~~~~~~~k~dl~rf 111 (370)
++++|||||++|+||||||||||++|||+|++||.||++|||++||+ ||+|||+||||
T Consensus 2 ~k~~~~l~~~rp~nfg~gq~iqpk~dlt~~~k~p~~i~lq~q~~~l~-~lkvpp~i~qf--------------------- 59 (209)
T KOG3166|consen 2 KKVVNPLFEKRPKNFGIGQDIQPKRDLTCFVKWPRYIRLQRQKAILY-RLKVPPAINQF--------------------- 59 (209)
T ss_pred CcccchhHHhcccccCcccccccccccccceeccHHHHhhhchhhhe-eeccCcchhhh---------------------
Confidence 67899999999999999999999999999999999999999999999 99665555555
Q ss_pred ccchhHHHHHHHHHHHhhccCCCCCccccchhcchhhHHHHHHHhhhcCcchHHHHHHHHHHHHHHHhhccCCCCCCCCc
Q psy6066 112 VKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPN 191 (370)
Q Consensus 112 v~wPkYirIQrQraiL~~~lKipp~i~qf~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a~a~~ka~~k~~~~~kkp~ 191 (370)
++.||.+++.++++++++||||++.+++.|
T Consensus 60 -----------------------------~~~l~~~~a~~~~kl~hkyrP~~~~~~~~r--------------------- 89 (209)
T KOG3166|consen 60 -----------------------------TQALDLQTATKLLKLAHKYRPETKKKKKQR--------------------- 89 (209)
T ss_pred -----------------------------hcccchHHHHHHHHHHhhcCchhhhhhhhh---------------------
Confidence 455556677889999999999776554333
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
..|++++++++++|+++|..+..|+|+|
T Consensus 90 ----------------------------------------------------~~a~~~~~~kg~v~tkrp~~~~~gvnTV 117 (209)
T KOG3166|consen 90 ----------------------------------------------------LLAEAKAAGKGDVPTKRPPVLRAGVNTV 117 (209)
T ss_pred ----------------------------------------------------HHHHHHHHhccCCCcCCCcccccCcceE
Confidence 3345556677789999999999999999
Q ss_pred HHHHhcCcceEEEEeccCCchhHHHhHHHHhhhc---------CCcEEEEccccHHHHHHHHHHHhhhhhhhHHHHhhhh
Q psy6066 272 TRLVVKKKASLVIIAHDVDPIELVLFLPALCRKM---------GIPYCIVDSSDKANLAKLIESVKVNFTDRYDEIRRQW 342 (370)
Q Consensus 272 tklIekkkA~LVVIA~DVdPiElV~~LPaLCek~---------~VPY~iV~SeDkg~lakLve~ir~nynD~ydEi~~~w 342 (370)
|++||+++||||||||||||||+|+|||+||++| .--.|+|++||+|+|++|||++++||||+||||++||
T Consensus 118 ttLVenKKAQLVV~ahDvDPIELVvFLPaLC~kmivk~~~~kT~t~~a~v~~edk~~l~kl~e~i~tn~ndrydei~~hW 197 (209)
T KOG3166|consen 118 TTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMIVKGKHRKTCTTVAFVNSEDKGALAKLVEAIRTNYNDRYDEICRHW 197 (209)
T ss_pred eehhhccccceeEEecccCchhheeecHHhhhhhcccccccceeeeeeeechhhHHHHHHHHHHHhcccccchhhhhhcc
Confidence 9999999999999999999999999999999988 2334568999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHH
Q psy6066 343 GGGSLGSKSAARIAKLERA 361 (370)
Q Consensus 343 GG~ilg~ks~~~~~~~~~~ 361 (370)
|| ||+|+ ++|+|
T Consensus 198 gg-----ks~a~--kleka 209 (209)
T KOG3166|consen 198 GG-----KSVAH--KLEKA 209 (209)
T ss_pred cC-----HhHHH--HhhcC
Confidence 99 99999 88875
No 4
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=99.87 E-value=8.6e-23 Score=194.89 Aligned_cols=174 Identities=33% Similarity=0.444 Sum_probs=133.8
Q ss_pred ccccccccccccCccCCCccccccccccchhhhhhhhHHHHhhhhcCCCCCccccccccccccccccccccccccccchh
Q psy6066 37 PLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRFVKWPK 116 (370)
Q Consensus 37 ~l~~~~~~~f~~g~~i~~k~dl~rfvkwP~yir~Qrqk~il~krlKvP~~i~qf~~~ld~~~~~~~~~k~dl~rfv~wPk 116 (370)
.-|-++|+...|-. -++-|.+=.+-|--|-- +..- ||+|++.++.+
T Consensus 50 srfvkwP~yirlQR---qk~iL~~RlKvPp~inq------F~~~-------------ldk~~a~~lfk------------ 95 (266)
T PTZ00365 50 SRYVRWPRYILLQR---QRRVLLQRLKVPPALNQ------FTYT-------------LDKNQASQLLR------------ 95 (266)
T ss_pred hhhcccchhhhHHH---HHHHHHHhcCCCccHhh------hhhh-------------hcHhhHHHHHH------------
Confidence 36889998765532 24667676788877641 1222 48888887742
Q ss_pred HHHHHHHHHHHhhccCCCCCccccchhcchhhHHHHHHHhhhcCcchHHHHHHHHHHHHHHHhhccCCCCCCCCcccccc
Q psy6066 117 YIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQG 196 (370)
Q Consensus 117 YirIQrQraiL~~~lKipp~i~qf~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a~a~~ka~~k~~~~~kkp~~i~~G 196 (370)
+| .||.|+ |. ..+.++ |.++|+++++|+++. +++|++|++|
T Consensus 96 ---------ll---~KYrPE-----------tk------------~~kk~R---L~~~A~~~a~g~~~~-~kkp~~vk~G 136 (266)
T PTZ00365 96 ---------LL---SKYKPE-----------TR------------AEKKAR---LLKEAEKAAAGEEVE-SKKPFMLKYG 136 (266)
T ss_pred ---------HH---HhcCCc-----------cH------------HHHHHH---HHHHHHHHhcCCCCC-CCCchHHHhh
Confidence 12 277775 22 223456 889999999999877 8999999999
Q ss_pred chhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHHHHHh
Q psy6066 197 TNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVV 276 (370)
Q Consensus 197 in~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVtklIe 276 (370)
+||||++||+++|.|||||+||||++++.|+|.+ |+ ++ ..|+++..|-.+++.+|.
T Consensus 137 in~VtklIekkKAkLVIIA~DVsP~t~kk~LP~L---------------C~-----k~----~VPY~iv~sK~eLG~AIG 192 (266)
T PTZ00365 137 LNHVTDLVEYKKAKLVVIAHDVDPIELVCFLPAL---------------CR-----KK----EVPYCIIKGKSRLGKLVH 192 (266)
T ss_pred hHHHHHHHHhCCccEEEEeCCCCHHHHHHHHHHH---------------Hh-----cc----CCCEEEECCHHHHHHHhC
Confidence 9999999999999999999999999999999986 55 33 457999999999999999
Q ss_pred cCcceEEEEeccCCchhHHHhHHHHhhhcCCcE
Q psy6066 277 KKKASLVIIAHDVDPIELVLFLPALCRKMGIPY 309 (370)
Q Consensus 277 kkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY 309 (370)
++.+..|.|. ||++.|-.. |-.||+..+.-|
T Consensus 193 kktraVVAIt-dV~~EDk~~-l~~lv~~~~~~~ 223 (266)
T PTZ00365 193 QKTAAVVAID-NVRKEDQAE-FDNLCKNFRAMF 223 (266)
T ss_pred CCCceEEEec-ccCHHHHHH-HHHHHHHHHHhc
Confidence 9888888887 699988554 566776655555
No 5
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=99.86 E-value=6.4e-22 Score=188.58 Aligned_cols=175 Identities=26% Similarity=0.384 Sum_probs=132.8
Q ss_pred ccccccccccccCccCCCccccccccccchhhhhhhhHHHHhhhhcCCCCCccccccccccccccccccccccccccchh
Q psy6066 37 PLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRFVKWPK 116 (370)
Q Consensus 37 ~l~~~~~~~f~~g~~i~~k~dl~rfvkwP~yir~Qrqk~il~krlKvP~~i~qf~~~ld~~~~~~~~~k~dl~rfv~wPk 116 (370)
.-|-++|+...|-. -++-|..=.+-|--|-- +..- ||+|++.++.+
T Consensus 48 srfvkwP~yirlQr---qk~iL~~rlKvPp~inq------F~~~-------------ldk~~a~~lfk------------ 93 (263)
T PTZ00222 48 SRFMRWPTFVTMQR---KKRVLQRRLKVPPALNQ------FTKV-------------LDRSSRNELLK------------ 93 (263)
T ss_pred hhhhcchhhhhHHH---HHHHHHHhcCCCchHhh------hhhh-------------hhHhhHHHHHH------------
Confidence 46889998766532 24567777788877641 1222 48888877742
Q ss_pred HHHHHHHHHHHhhccCCCCCccccchhcchhhHHHHHHHhhhcCcchHHHHHHHHHHHHHHHhhccCCCCC-CCCccccc
Q psy6066 117 YIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPT-KKPNQIKQ 195 (370)
Q Consensus 117 YirIQrQraiL~~~lKipp~i~qf~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a~a~~ka~~k~~~~~-kkp~~i~~ 195 (370)
+| .||.|+ |. ..+.++ |.++|+++++|+++.++ ++|++|..
T Consensus 94 ---------ll---~KYrPE-----------tk------------~~kk~R---l~~~A~~~~~g~~~~~~~kkp~~Lvs 135 (263)
T PTZ00222 94 ---------LI---KKYAPE-----------TR------------KARRDR---LHKVAEEKKKDPKKTVSTKAPLAVVT 135 (263)
T ss_pred ---------HH---HHcCCc-----------cH------------HHHHHH---HHHHHHHHhcCCCCCCCCCCCCeecc
Confidence 11 267774 32 123456 88999999999998877 99999999
Q ss_pred cchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHHHHH
Q psy6066 196 GTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLV 275 (370)
Q Consensus 196 Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVtklI 275 (370)
|+|+||++||+++|+|||||+||||++++.|+|.+ |+ ++ ..|+++..|-.+++.+|
T Consensus 136 G~n~VtkaIekkKAkLVIIA~DVsPie~vk~LpaL---------------Cr-----k~----~VPY~iVktKaeLG~AI 191 (263)
T PTZ00222 136 GLQEVTRAIEKKQARMVVIANNVDPVELVLWMPNL---------------CR-----AN----KIPYAIVKDMARLGDAI 191 (263)
T ss_pred CHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHH---------------HH-----hc----CCCEEEECCHHHHHHHH
Confidence 99999999999999999999999999999999996 55 23 45799999999999999
Q ss_pred hcCcceEEEEeccCCchhHHHhHHHHhhhcCCcE
Q psy6066 276 VKKKASLVIIAHDVDPIELVLFLPALCRKMGIPY 309 (370)
Q Consensus 276 ekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY 309 (370)
.++.+..|+|. |+.+.+ -.-|--|++-.+.-|
T Consensus 192 GkKtravVAIt-D~g~ed-~~~l~~lv~~~~~~~ 223 (263)
T PTZ00222 192 GRKTATCVAIT-DVNAED-EAALKNLIRSVNARF 223 (263)
T ss_pred CCCCCeEEEEe-eCCccc-HHHHHHHHHHHHHhh
Confidence 99988877776 677754 444566666554444
No 6
>KOG3166|consensus
Probab=99.73 E-value=8.8e-19 Score=162.90 Aligned_cols=53 Identities=58% Similarity=0.817 Sum_probs=50.1
Q ss_pred HhhccCCCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhc
Q psy6066 178 KIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKY 230 (370)
Q Consensus 178 ka~~k~~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky 230 (370)
+++++++++|++|+++..|+|+||+|||++||+|||||||||||||++|||.+
T Consensus 95 ~~~~kg~v~tkrp~~~~~gvnTVttLVenKKAQLVV~ahDvDPIELVvFLPaL 147 (209)
T KOG3166|consen 95 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPAL 147 (209)
T ss_pred HHHhccCCCcCCCcccccCcceEeehhhccccceeEEecccCchhheeecHHh
Confidence 35566799999999999999999999999999999999999999999999997
No 7
>KOG3167|consensus
Probab=99.71 E-value=6.8e-18 Score=149.01 Aligned_cols=79 Identities=28% Similarity=0.593 Sum_probs=70.0
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHH--------HHHHHhhhhh
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAK--------LIESVKVNFT 332 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lak--------Lve~ir~nyn 332 (370)
..|++|+++|.+.|++|..+|||||+|++|||+++|||+|||+.||||++++| +|+|+.+. +|+. ...|.
T Consensus 58 k~lrrGvKevqK~vrkGeKGl~VlAgd~sPiDvi~HlP~lCEd~~vPYvy~psk~dlg~A~~~krpt~~v~v~p-~~eyk 136 (153)
T KOG3167|consen 58 KGLRRGVKEVQKRVRKGEKGLCVLAGDTSPIDVITHLPALCEDRGVPYVYTPSKEDLGAAGGTKRPTCCVFVKP-GGEYK 136 (153)
T ss_pred hhHHHHHHHHHHHHhcCCcceEEEecCCccHHHHhccchhhhccCCCccccccHHHHHHhcCCCCCceEEEEee-ChhHH
Confidence 35899999999999999999999999999999999999999999999999999 49998754 2332 67899
Q ss_pred hhHHHHhhh
Q psy6066 333 DRYDEIRRQ 341 (370)
Q Consensus 333 D~ydEi~~~ 341 (370)
|.|||+...
T Consensus 137 e~ydev~ee 145 (153)
T KOG3167|consen 137 ELYDEVLEE 145 (153)
T ss_pred HHHHHHHHH
Confidence 999998754
No 8
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=7.6e-17 Score=138.33 Aligned_cols=103 Identities=35% Similarity=0.466 Sum_probs=81.8
Q ss_pred cCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcE
Q psy6066 230 YRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPY 309 (370)
Q Consensus 230 y~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY 309 (370)
+.|++..+|--.++..|. +...|++|+|+++++|++|+|+|||||.|++|++++.|||.||+++||||
T Consensus 6 ~~~~~~~~k~l~~l~~a~------------~~~ki~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpy 73 (116)
T COG1358 6 LAPEMLEQKALSLLGKAS------------RAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPY 73 (116)
T ss_pred cCcHHHHHHHHHHHHHHH------------hcCCchhhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCE
Confidence 456777777777777665 34568899999999999999999999999999999999999999999999
Q ss_pred EEEccc-cHHHHHHHH-----HHHhhhhhhhHHHHhhhhCCC
Q psy6066 310 CIVDSS-DKANLAKLI-----ESVKVNFTDRYDEIRRQWGGG 345 (370)
Q Consensus 310 ~iV~Se-Dkg~lakLv-----e~ir~nynD~ydEi~~~wGG~ 345 (370)
++|.|. ++|.+.++- ..+...|. .|.+-..+|++.
T Consensus 74 v~V~sk~~LG~a~g~~~~~vv~i~~~~~~-~~~~~l~~~~~~ 114 (116)
T COG1358 74 VYVGSKKELGKAVGKEVRKVVAIVDKGFA-KKLEDLVEKVEE 114 (116)
T ss_pred EEeCCHHHHHHHhCCCcceeEEEeehhhh-hHHHHHHHHhhh
Confidence 999985 899887654 22345555 444444567654
No 9
>KOG3387|consensus
Probab=99.43 E-value=1.7e-13 Score=119.62 Aligned_cols=75 Identities=27% Similarity=0.481 Sum_probs=60.6
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcccc-HHHHHHHHHHHhhhhhhhHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSD-KANLAKLIESVKVNFTDRYD 336 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~SeD-kg~lakLve~ir~nynD~yd 336 (370)
..++.|.||+|+.+++|..++||+|+||.|.||+.|||.||+++|||||||+|++ +|..-+..-..+++-.+.++
T Consensus 33 kql~kg~NEaTk~Lnrgi~~~Vv~aaD~kP~eIt~HLp~LcedknVp~v~Vpsk~alG~~cg~~~~~r~~~a~~i~ 108 (131)
T KOG3387|consen 33 KQLKKGANEATKTLNRGISEFVVMAADVKPLEITLHLPLLCEDKNVPYVFVPSKQALGLACGELVVLRPVIACSIT 108 (131)
T ss_pred HHHhcccchHhhhhccCceeEEEEEccCCHHHHHHHhHHHhhccCCceEEeeccHHhhhhhhhHhhcCcceeEEEE
Confidence 7789999999999999999999999999999999999999999999999999864 33222211123555545444
No 10
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=99.36 E-value=9.6e-13 Score=107.59 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=54.8
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lak 322 (370)
..++.|+++++++|++|.+++|+||.|+||. ++.|||.||+++||||++|+| +|+|...+
T Consensus 12 ~~~vvG~kqt~Kai~kg~~~~v~iA~Da~~~-vv~~l~~lceek~Ip~v~V~s~~~LGkAcg 72 (84)
T PRK13600 12 QHFVVGLKETLKALKKDQVTSLIIAEDVEVY-LMTRVLSQINQKNIPVSFFKSKHALGKHVG 72 (84)
T ss_pred cCceeeHHHHHHHHhcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 4567899999999999999999999999988 889999999999999999999 48887643
No 11
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=99.15 E-value=1.1e-10 Score=99.84 Aligned_cols=62 Identities=50% Similarity=0.763 Sum_probs=56.4
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAKL 323 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lakL 323 (370)
..|..|.++|+++|++|+++|||||+|++|.+++.++|.+|+++||||+++.+ +|+|.+-+.
T Consensus 25 gkl~~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a~Gk 87 (117)
T TIGR03677 25 GKIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGAAAGL 87 (117)
T ss_pred CCEeEcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC
Confidence 34789999999999999999999999999999999999999999999999977 478877553
No 12
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=99.14 E-value=1.2e-10 Score=100.39 Aligned_cols=61 Identities=48% Similarity=0.695 Sum_probs=56.0
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lak 322 (370)
..|..|.++|.++|++|+++|||||.|++|.+++.+++.||++.||||+++.+ +++|.+-+
T Consensus 29 gklv~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~a~G 90 (122)
T PRK04175 29 GKIKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGKAAG 90 (122)
T ss_pred CCEeEcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhC
Confidence 35789999999999999999999999999999999999999999999999977 47877654
No 13
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=99.04 E-value=2.6e-10 Score=91.83 Aligned_cols=61 Identities=34% Similarity=0.563 Sum_probs=55.6
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lak 322 (370)
..|..|++++.+.+++|++.|||||.|++|..+..|++.+|++++|||++++| +++|.+-+
T Consensus 14 ~~lv~G~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG~~~g 75 (95)
T PF01248_consen 14 GRLVKGIKEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEELGRACG 75 (95)
T ss_dssp SEEEESHHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHHHHHTT
T ss_pred CCEEEchHHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHHHHHHC
Confidence 45889999999999999999999999999999999999999999999999997 47776543
No 14
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=98.86 E-value=4e-09 Score=85.20 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=52.9
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHH
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLA 321 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~la 321 (370)
.+..|.+++.+.|++|++.||+||.|++| .+..+++.+|++.+|||+++.+ +|+|.+-
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~s~~eLG~a~ 69 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVDSMKKLGKAC 69 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHHHH
Confidence 36789999999999999999999999999 6999999999999999999987 4777653
No 15
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=3e-07 Score=79.36 Aligned_cols=70 Identities=34% Similarity=0.476 Sum_probs=59.8
Q ss_pred CccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchh
Q psy6066 190 PNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTN 269 (370)
Q Consensus 190 p~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~Gin 269 (370)
.--|..|+|++|+.||+++|+||+||.|++|.+++.++|.+ |+. .+.|+.....-.
T Consensus 25 ~~ki~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~l---------------c~~---------~~vpyv~V~sk~ 80 (116)
T COG1358 25 AGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPAL---------------CEE---------KNVPYVYVGSKK 80 (116)
T ss_pred cCCchhhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHH---------------HHh---------cCCCEEEeCCHH
Confidence 34689999999999999999999999999999999999996 552 235799999999
Q ss_pred HHHHHHhcCcceEE
Q psy6066 270 TVTRLVVKKKASLV 283 (370)
Q Consensus 270 eVtklIekkkA~LV 283 (370)
++++++....+..|
T Consensus 81 ~LG~a~g~~~~~vv 94 (116)
T COG1358 81 ELGKAVGKEVRKVV 94 (116)
T ss_pred HHHHHhCCCcceeE
Confidence 99999998753333
No 16
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=98.51 E-value=2.5e-07 Score=75.35 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=53.0
Q ss_pred CcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHH
Q psy6066 261 PNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANL 320 (370)
Q Consensus 261 p~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~l 320 (370)
+.-+..|.+++.++|++|++.||+||.|++| ++...|+.+|+..+|||+++.+ +|+|..
T Consensus 6 ~GKlv~G~~~vlkaIk~gkakLViiA~Da~~-~~~k~i~~~c~~~~Vpv~~~~t~~eLG~A 65 (82)
T PRK13601 6 PSKRVVGAKQTLKAITNCNVLQVYIAKDAEE-HVTKKIKELCEEKSIKIVYIDTMKELGVM 65 (82)
T ss_pred CccEEEchHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHhCCCCEEEeCCHHHHHHH
Confidence 4557789999999999999999999999996 9999999999999999998876 477754
No 17
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=98.42 E-value=4.2e-07 Score=75.66 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=51.5
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE-cc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-DS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-~S-eDkg~lak 322 (370)
..+..|.++|.+.|++|+|.||+||.|+ |.++..+++.+|++.+|||+.. .+ +++|.+-+
T Consensus 15 gkl~~G~~~v~kai~~gkaklViiA~D~-~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~G 76 (99)
T PRK01018 15 GKVILGSKRTIKAIKLGKAKLVIVASNC-PKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCG 76 (99)
T ss_pred CCEEEcHHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhC
Confidence 3467899999999999999999999998 5599999999999999997664 34 57887654
No 18
>PRK06683 hypothetical protein; Provisional
Probab=98.30 E-value=1.4e-06 Score=70.67 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=49.9
Q ss_pred cccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHH
Q psy6066 264 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANL 320 (370)
Q Consensus 264 Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~l 320 (370)
+..|.+++.+.|++|++.||+||.|++|- +.--+..+|+..+|||.++.+ +|+|..
T Consensus 12 ~v~G~~~v~kaik~gkaklViiA~Da~~~-~~~~i~~~~~~~~Vpv~~~~t~~eLG~A 68 (82)
T PRK06683 12 VVVGHKRTLEAIKNGIVKEVVIAEDADMR-LTHVIIRTALQHNIPITKVESVRKLGKV 68 (82)
T ss_pred EEEcHHHHHHHHHcCCeeEEEEECCCCHH-HHHHHHHHHHhcCCCEEEECCHHHHHHH
Confidence 56899999999999999999999999987 677789999999999999987 466654
No 19
>KOG3406|consensus
Probab=98.23 E-value=1.5e-06 Score=76.58 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=61.8
Q ss_pred CcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHHHHHH
Q psy6066 261 PNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAKLIES 326 (370)
Q Consensus 261 p~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lakLve~ 326 (370)
...|.+|+++.+|++++.+|+|||+|.|+|-..++-..-+||-+++||.+-|.| +.+|+|++|...
T Consensus 32 ~dGlarGi~Ea~KaldkrqA~lcvLaencdep~yvKLVeALcaeh~iplikV~d~k~LGew~Glcki 98 (134)
T KOG3406|consen 32 HDGLARGIHEAAKALDKRQAHLCVLAENCDEPMYVKLVEALCAEHQIPLIKVGDAKELGEWAGLCKI 98 (134)
T ss_pred hchHHhHHHHHHHHHhhCceeEEEEeccCCchHHHHHHHHHHhhcCCCeEEeccchhhhhhhceeee
Confidence 456889999999999999999999999999999999999999999999999987 699999998764
No 20
>PRK07714 hypothetical protein; Provisional
Probab=98.03 E-value=1.8e-05 Score=65.65 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=50.6
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHH
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANL 320 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~l 320 (370)
.+..|.++|.+.|.+|++.||++|.|++|- ....+..+|+..+|||+++.+ +|+|.+
T Consensus 18 k~v~G~~~v~~al~~g~~~lViiA~D~s~~-~~~ki~~~~~~~~vp~~~~~sk~eLG~a 75 (100)
T PRK07714 18 KVISGEELVLKEVRSGKAKLVLLSEDASVN-TTKKITDKCTYYNVPMRKVENRQQLGHA 75 (100)
T ss_pred CeeecHHHHHHHHHhCCceEEEEeCCCCHH-HHHHHHHHHHhcCCCEEEeCCHHHHHHH
Confidence 367899999999999999999999999997 888999999999999998865 466654
No 21
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=97.20 E-value=0.0011 Score=57.02 Aligned_cols=71 Identities=31% Similarity=0.379 Sum_probs=55.3
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|++++++.|+++++.||+||+|++|.++..+++.+ |+. ...|+.....-.++
T Consensus 26 kl~~G~~~v~kaikkgka~LVilA~D~s~~~~~~~i~~l---------------c~~---------~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 26 KIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPAL---------------CEE---------KGIPYVYVKKKEDL 81 (117)
T ss_pred CEeEcHHHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHH---------------HHH---------cCCCEEEeCCHHHH
Confidence 378899999999999999999999999999888888775 552 23467776677788
Q ss_pred HHHHhcC-cceEEEEe
Q psy6066 272 TRLVVKK-KASLVIIA 286 (370)
Q Consensus 272 tklIekk-kA~LVVIA 286 (370)
..++.+. .+..|.|.
T Consensus 82 G~a~Gk~~~~svvaI~ 97 (117)
T TIGR03677 82 GAAAGLEVGAASAAIV 97 (117)
T ss_pred HHHhCCCCCeEEEEEE
Confidence 8888875 34444443
No 22
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=97.19 E-value=0.00066 Score=57.87 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=46.4
Q ss_pred cccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEE-Ecc-ccHHHHH
Q psy6066 264 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCI-VDS-SDKANLA 321 (370)
Q Consensus 264 Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~i-V~S-eDkg~la 321 (370)
+..|.+.+.++|++|++.||+||.|++|-- .--+=.+|+..|||++. +.+ +|+|.+-
T Consensus 26 lv~G~~~vlkalk~gkaklViiA~D~~~~~-kkki~~~~~~~~Vpv~~~~~t~~eLG~A~ 84 (108)
T PTZ00106 26 YTLGTKSTLKALRNGKAKLVIISNNCPPIR-RSEIEYYAMLSKTGVHHYAGNNNDLGTAC 84 (108)
T ss_pred eeecHHHHHHHHHcCCeeEEEEeCCCCHHH-HHHHHHHHhhcCCCEEEeCCCHHHHHHHh
Confidence 568999999999999999999999997753 44566789999999974 444 5777653
No 23
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=97.17 E-value=0.0011 Score=57.52 Aligned_cols=71 Identities=32% Similarity=0.403 Sum_probs=54.8
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
-+..|.+++.+.|+++++.||+||.|++|.++..+++.+ |+. ...|+.....-.++
T Consensus 30 klv~G~~~v~kaikkgkakLVilA~D~s~~~i~~~~~~l---------------c~~---------~~Vp~~~~~tk~eL 85 (122)
T PRK04175 30 KIKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLL---------------CEE---------KKIPYVYVPSKKDL 85 (122)
T ss_pred CEeEcHHHHHHHHHcCCccEEEEeCCCChHHHHHHHHHH---------------HHH---------cCCCEEEECCHHHH
Confidence 378999999999999999999999999999888777775 552 23467766667788
Q ss_pred HHHHhcC-cceEEEEe
Q psy6066 272 TRLVVKK-KASLVIIA 286 (370)
Q Consensus 272 tklIekk-kA~LVVIA 286 (370)
++++.+. .+..|.|.
T Consensus 86 G~a~Gk~~~~svvaI~ 101 (122)
T PRK04175 86 GKAAGLEVGAAAAAIV 101 (122)
T ss_pred HHHhCCCCCeEEEEEe
Confidence 8888876 34444433
No 24
>PRK07283 hypothetical protein; Provisional
Probab=97.08 E-value=0.0023 Score=53.28 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=46.4
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANL 320 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~l 320 (370)
..+..|-..|.+.|.+|++.||++|.|++|-- .--+-..|+..+|||+.+.+ +++|.+
T Consensus 17 Gklv~G~~~v~~aik~gk~~lVi~A~Das~~~-~kk~~~~~~~~~Vp~~~~~t~~eLG~a 75 (98)
T PRK07283 17 GRIISGEELVVKAIQSGQAKLVFLANDAGPNL-TKKVTDKSNYYQVEVSTVFSTLELSAA 75 (98)
T ss_pred CCeeEcHHHHHHHHHcCCccEEEEeCCCCHHH-HHHHHHHHHHcCCCEEEeCCHHHHHHH
Confidence 34678999999999999999999999998744 44445599999999987765 355543
No 25
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=96.59 E-value=0.0045 Score=49.87 Aligned_cols=64 Identities=28% Similarity=0.389 Sum_probs=53.6
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
-+..|++++.+.++++++.||++|.|++|.....+++.| |++ . ..|++...+-.++
T Consensus 15 ~lv~G~~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~---------------c~~-----~----~Ip~~~~~s~~eL 70 (95)
T PF01248_consen 15 RLVKGIKEVLKALKKGKAKLVILAEDCSPDSIKKHLPAL---------------CEE-----K----NIPYVFVPSKEEL 70 (95)
T ss_dssp EEEESHHHHHHHHHTTCESEEEEETTSSSGHHHHHHHHH---------------HHH-----T----TEEEEEESHHHHH
T ss_pred CEEEchHHHHHHHHcCCCcEEEEcCCCChhhhcccchhh---------------eec-----c----ceeEEEECCHHHH
Confidence 378999999999999999999999999999998888776 442 2 2467777777899
Q ss_pred HHHHhcCc
Q psy6066 272 TRLVVKKK 279 (370)
Q Consensus 272 tklIekkk 279 (370)
..++....
T Consensus 71 G~~~g~~~ 78 (95)
T PF01248_consen 71 GRACGKKR 78 (95)
T ss_dssp HHHTTSSS
T ss_pred HHHHCCCC
Confidence 99998885
No 26
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=96.06 E-value=0.013 Score=48.48 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=46.8
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
-+..|++++++.|++..+.+|+||.|+||. ++.++|.+ |++ ...|+...--..++
T Consensus 13 ~~vvG~kqt~Kai~kg~~~~v~iA~Da~~~-vv~~l~~l---------------cee---------k~Ip~v~V~s~~~L 67 (84)
T PRK13600 13 HFVVGLKETLKALKKDQVTSLIIAEDVEVY-LMTRVLSQ---------------INQ---------KNIPVSFFKSKHAL 67 (84)
T ss_pred CceeeHHHHHHHHhcCCceEEEEeCCCCHH-HHHHHHHH---------------HHH---------cCCCEEEECCHHHH
Confidence 457899999999999999999999999987 66788775 553 12467776666777
Q ss_pred HHHHh
Q psy6066 272 TRLVV 276 (370)
Q Consensus 272 tklIe 276 (370)
+++-.
T Consensus 68 GkAcg 72 (84)
T PRK13600 68 GKHVG 72 (84)
T ss_pred HHHhC
Confidence 66643
No 27
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=95.88 E-value=0.02 Score=48.52 Aligned_cols=58 Identities=26% Similarity=0.386 Sum_probs=46.3
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEc-cccHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVD-SSDKANL 320 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~-SeDkg~l 320 (370)
..+..|-+.|.+.|.+|++.||++|.|++| +..--+-.+|+..+|||+..- ++|+|.+
T Consensus 16 Gklv~G~~~v~~aik~gk~~lVI~A~D~s~-~~kkki~~~~~~~~vp~~~~~t~~eLg~a 74 (104)
T PRK05583 16 GKLLEGYNKCEEAIKKKKVYLIIISNDISE-NSKNKFKNYCNKYNIPYIEGYSKEELGNA 74 (104)
T ss_pred CCeeecHHHHHHHHHcCCceEEEEeCCCCH-hHHHHHHHHHHHcCCCEEEecCHHHHHHH
Confidence 346789999999999999999999999977 345556678999999987653 3456543
No 28
>KOG3387|consensus
Probab=95.24 E-value=0.015 Score=51.68 Aligned_cols=38 Identities=29% Similarity=0.508 Sum_probs=36.4
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhc
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKY 230 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky 230 (370)
++.|.|+.|+..+++-..|||+|.|+.|.||-.|||-+
T Consensus 35 l~kg~NEaTk~Lnrgi~~~Vv~aaD~kP~eIt~HLp~L 72 (131)
T KOG3387|consen 35 LKKGANEATKTLNRGISEFVVMAADVKPLEITLHLPLL 72 (131)
T ss_pred HhcccchHhhhhccCceeEEEEEccCCHHHHHHHhHHH
Confidence 56799999999999999999999999999999999997
No 29
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=94.88 E-value=0.064 Score=43.54 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=31.2
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhh
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEK 229 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpk 229 (370)
-+..|.+.+++.|++++|.||+||.|.++ .+...++.
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~ 47 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADP-RLTEKVEA 47 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCH-HHHHHHHH
Confidence 36789999999999999999999999999 35554444
No 30
>PRK09190 hypothetical protein; Provisional
Probab=93.37 E-value=0.15 Score=48.78 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=46.3
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhh------cCCcEEEEcc-ccHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRK------MGIPYCIVDS-SDKAN 319 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek------~~VPY~iV~S-eDkg~ 319 (370)
..|+.|-..|...|.+|++.||++|.|.++=..--+ -.+|+. .+|||+.+-+ +++|.
T Consensus 110 GklVsG~~~V~~alk~gk~~Lvi~A~DaS~~t~kKl-~~~~~~~~~~~~~~Vp~v~~~tk~eLg~ 173 (220)
T PRK09190 110 GQVVSGFEKVDAALRSGEAAALIHASDGAADGKRKL-DQARRALVHETGREIPVIGLFTAAELGL 173 (220)
T ss_pred CCEeecHHHHHHHHHcCCceEEEEeccCChhHHHHH-HHHHHhhcccccCCccEEEecCHHHHHH
Confidence 457899999999999999999999999999765554 448877 9999988755 34543
No 31
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=93.16 E-value=0.36 Score=40.39 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=46.9
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccc-cchhH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIK-QGTNT 270 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk-~Gine 270 (370)
-+..|.+.+.+.|.+++|.||+||.|.++ .+...++.| |+. ...|.... .--.+
T Consensus 16 kl~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~---------------c~~---------~~Ip~~~~~~tk~e 70 (99)
T PRK01018 16 KVILGSKRTIKAIKLGKAKLVIVASNCPK-DIKEDIEYY---------------AKL---------SGIPVYEYEGSSVE 70 (99)
T ss_pred CEEEcHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHH---------------HHH---------cCCCEEEECCCHHH
Confidence 46789999999999999999999999866 554444443 552 12344332 34577
Q ss_pred HHHHHhcCc-ceEEEE
Q psy6066 271 VTRLVVKKK-ASLVII 285 (370)
Q Consensus 271 VtklIekkk-A~LVVI 285 (370)
+..++.+.- +..|.|
T Consensus 71 LG~a~Gk~~~~~~vaI 86 (99)
T PRK01018 71 LGTLCGKPFTVSALAI 86 (99)
T ss_pred HHHHhCCCCCEEEEEE
Confidence 888888663 444444
No 32
>KOG3167|consensus
Probab=92.94 E-value=0.35 Score=43.97 Aligned_cols=38 Identities=26% Similarity=0.520 Sum_probs=36.6
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhc
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKY 230 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky 230 (370)
|+-|+.+|.+.|.++.--|+|+|.|++|+.+..|||.+
T Consensus 60 lrrGvKevqK~vrkGeKGl~VlAgd~sPiDvi~HlP~l 97 (153)
T KOG3167|consen 60 LRRGVKEVQKRVRKGEKGLCVLAGDTSPIDVITHLPAL 97 (153)
T ss_pred HHHHHHHHHHHHhcCCcceEEEecCCccHHHHhccchh
Confidence 67799999999999999999999999999999999997
No 33
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=91.92 E-value=0.21 Score=40.91 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=29.8
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHh
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFL 227 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~L 227 (370)
-+..|.+.+.+.|.+++|.||+||.|.++ .+...+
T Consensus 8 Klv~G~~~vlkaIk~gkakLViiA~Da~~-~~~k~i 42 (82)
T PRK13601 8 KRVVGAKQTLKAITNCNVLQVYIAKDAEE-HVTKKI 42 (82)
T ss_pred cEEEchHHHHHHHHcCCeeEEEEeCCCCH-HHHHHH
Confidence 46789999999999999999999999997 444433
No 34
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=91.39 E-value=0.61 Score=40.08 Aligned_cols=57 Identities=23% Similarity=0.301 Sum_probs=47.0
Q ss_pred cccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE--ccccHHHHH
Q psy6066 264 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV--DSSDKANLA 321 (370)
Q Consensus 264 Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV--~SeDkg~la 321 (370)
+.-|-++..+.+..|++.|||||.++ |-|+-.-|-..+.-.|||...- +|.|+|.+.
T Consensus 20 vilG~k~tiK~lk~gkaKliiiAsN~-P~~~k~~ieyYAkLs~ipV~~y~Gt~~eLG~~c 78 (100)
T COG1911 20 VILGSKRTIKSLKLGKAKLIIIASNC-PKELKEDIEYYAKLSDIPVYVYEGTSVELGTVC 78 (100)
T ss_pred EEEehHHHHHHHHcCCCcEEEEecCC-CHHHHHHHHHHHHHcCCcEEEecCCceeHHhhh
Confidence 35699999999999999999999987 6677777777777779998766 456888764
No 35
>PRK06683 hypothetical protein; Provisional
Probab=89.02 E-value=0.33 Score=39.56 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=27.6
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChHH
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIE 222 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPie 222 (370)
+..|.+.+.+.|++++++||+||.|.++--
T Consensus 12 ~v~G~~~v~kaik~gkaklViiA~Da~~~~ 41 (82)
T PRK06683 12 VVVGHKRTLEAIKNGIVKEVVIAEDADMRL 41 (82)
T ss_pred EEEcHHHHHHHHHcCCeeEEEEECCCCHHH
Confidence 567999999999999999999999999963
No 36
>PF08228 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR013241 This family of fungal proteins form a subunit of RNase P, the ribonucleoprotein enzyme that cleaves the leader sequence of precursor tRNAs to generate mature tRNAs. The structure of Pop3 has been assigned the L7Ae/L30e fold []. This RNA-binding fold is also present in human RNase P subunit Rpp38, raising the possibility that Pop3p and Rpp38 are functional homologues.
Probab=88.44 E-value=1.5 Score=40.24 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=43.2
Q ss_pred CCcccccchhHHHHHHhcCcce--E-EEEeccCCchhHHHhHHHHhhhcC--CcEEEEccccHHHHHHHHHH
Q psy6066 260 KPNQIKQGTNTVTRLVVKKKAS--L-VIIAHDVDPIELVLFLPALCRKMG--IPYCIVDSSDKANLAKLIES 326 (370)
Q Consensus 260 kp~~Lk~GineVtklIekkkA~--L-VVIA~DVdPiElV~~LPaLCek~~--VPY~iV~SeDkg~lakLve~ 326 (370)
.+..+-.|+|++++.+|...+. + .|--.| +|--++.|+|.||--.+ |..+-.+ +|..+.|-++
T Consensus 52 ~~~~v~~GfNsi~~~Le~~~~~~~~vFVcr~D-~ps~L~~h~P~Lva~as~~vrLV~Lp---kgs~~rLs~a 119 (158)
T PF08228_consen 52 WPWGVTVGFNSIVRYLECQASDNVYVFVCRSD-QPSILTSHFPQLVATASKSVRLVQLP---KGSEARLSEA 119 (158)
T ss_pred CCccEEEehHHHHHHHhcccCCCeEEEEECCC-CcHHHHHHHHHHHHhccCcceEEeCC---hhHHHHHHHH
Confidence 4567889999999999943332 3 333456 78889999999998877 5555555 3444444444
No 37
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=86.83 E-value=0.85 Score=39.03 Aligned_cols=30 Identities=33% Similarity=0.510 Sum_probs=27.5
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChHH
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIE 222 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPie 222 (370)
+..|.+.+.+.|++++|.||+||.|.++..
T Consensus 26 lv~G~~~vlkalk~gkaklViiA~D~~~~~ 55 (108)
T PTZ00106 26 YTLGTKSTLKALRNGKAKLVIISNNCPPIR 55 (108)
T ss_pred eeecHHHHHHHHHcCCeeEEEEeCCCCHHH
Confidence 678999999999999999999999999854
No 38
>PRK07714 hypothetical protein; Provisional
Probab=85.98 E-value=4 Score=33.93 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=27.2
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChH
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPI 221 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPi 221 (370)
+..|.+.|...+.+.++.||++|.|+++-
T Consensus 19 ~v~G~~~v~~al~~g~~~lViiA~D~s~~ 47 (100)
T PRK07714 19 VISGEELVLKEVRSGKAKLVLLSEDASVN 47 (100)
T ss_pred eeecHHHHHHHHHhCCceEEEEeCCCCHH
Confidence 57899999999999999999999999985
No 39
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.53 E-value=3.5 Score=33.60 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=39.8
Q ss_pred CcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccccHHHHHHHHH
Q psy6066 278 KKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKANLAKLIE 325 (370)
Q Consensus 278 kkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~SeDkg~lakLve 325 (370)
++|.+||+--|.--=+.+-.+-..|++.|+|++++++....+|...++
T Consensus 47 ~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l~ 94 (97)
T PF10087_consen 47 KKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERALE 94 (97)
T ss_pred CCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 568899999888888888889999999999999998766666655444
No 40
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=78.69 E-value=6.4 Score=33.51 Aligned_cols=93 Identities=20% Similarity=0.275 Sum_probs=59.4
Q ss_pred EEEEecCCChHHHHHHhhhcCcC--c----HHHHHHHHHHHHHHHHcCCCCCCCCCCccc--ccchhHHHHHHhcCcceE
Q psy6066 211 LVIIAHDVDPIELFKFLEKYRPE--S----WEAKKQRLKARAEKKIAKKEDTPTKKPNQI--KQGTNTVTRLVVKKKASL 282 (370)
Q Consensus 211 LVvIA~dVdPielv~~Lpky~pe--s----~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~L--k~GineVtklIekkkA~L 282 (370)
+++||+|-|..+++.|...|.-. - .-+--.+.+.. +.| .+... .-+ .-|-.++..+|.+|+.++
T Consensus 2 ~~l~a~d~dK~~~~~~a~~~~~ll~Gf~i~AT~gTa~~L~~----~~G---i~v~~-vk~~~~~g~~~i~~~i~~g~i~~ 73 (115)
T cd01422 2 IALIAHDNKKEDLVEFVKQHQELLSRHRLVATGTTGLLIQE----ATG---LTVNR-MKSGPLGGDQQIGALIAEGEIDA 73 (115)
T ss_pred EeEEecccchHHHHHHHHHHHHHhcCCEEEEechHHHHHHH----hhC---CcEEE-EecCCCCchhHHHHHHHcCceeE
Confidence 78999999999999988775211 0 00001111111 112 11111 111 246677999999999999
Q ss_pred EEEeccC---Cc-hhHHHhHHHHhhhcCCcEEE
Q psy6066 283 VIIAHDV---DP-IELVLFLPALCRKMGIPYCI 311 (370)
Q Consensus 283 VVIA~DV---dP-iElV~~LPaLCek~~VPY~i 311 (370)
|+-.-|- +| ..-...|--.|-+.+|||+-
T Consensus 74 VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 74 VIFFRDPLTAQPHEPDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred EEEcCCCCCCCcccccHHHHHHHHHHcCCCEEE
Confidence 9988763 44 55567788999999999975
No 41
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=75.84 E-value=12 Score=35.71 Aligned_cols=88 Identities=19% Similarity=0.338 Sum_probs=63.8
Q ss_pred ccchhHHHHHHhcCcceEEEEeccCCchhH--HHhHHHHhhhcCCcEEEEccccHHHHHHHHHHHhhhhhhhHHHHhhhh
Q psy6066 265 KQGTNTVTRLVVKKKASLVIIAHDVDPIEL--VLFLPALCRKMGIPYCIVDSSDKANLAKLIESVKVNFTDRYDEIRRQW 342 (370)
Q Consensus 265 k~GineVtklIekkkA~LVVIA~DVdPiEl--V~~LPaLCek~~VPY~iV~SeDkg~lakLve~ir~nynD~ydEi~~~w 342 (370)
++|.-..-++|++.+..-||++|= |++.- .-.+=++|+-+|+-.+.|+++|... ..|||.+- +|...+
T Consensus 100 Rk~~~kll~li~~~~V~rVvV~yk-DRL~RFGfe~le~~~~a~~~eivvv~~~e~~~-eELveDli--------sIltsf 169 (193)
T COG2452 100 RKGLLKLLKLVEGNSVRRVVVSYK-DRLNRFGFELVEAVCKAHNVEIVVVNQEDKDS-EELVEDLV--------SILTSF 169 (193)
T ss_pred hhhHHHHHHHHcCCceeEEEEEcc-chHhHHhHHHHHHHHHhcCcEEEEecCCCCCH-HHHHHHHH--------HHHHHH
Confidence 456667888999999999999982 33321 2346689999999999999987665 77777643 455666
Q ss_pred CCCCCCcchHHHHHHHHHHH
Q psy6066 343 GGGSLGSKSAARIAKLERAK 362 (370)
Q Consensus 343 GG~ilg~ks~~~~~~~~~~~ 362 (370)
-|-..|..|....+..+-++
T Consensus 170 s~kLYG~Rs~k~~~~~~~~~ 189 (193)
T COG2452 170 SAKLYGKRSHKNEKVKAAAK 189 (193)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 67777888877666654443
No 42
>PRK07283 hypothetical protein; Provisional
Probab=75.22 E-value=15 Score=30.61 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=43.9
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|...|...|.++++.||++|.|.++-. +.++...|+. -. .|.....--.++
T Consensus 18 klv~G~~~v~~aik~gk~~lVi~A~Das~~~----------------~kk~~~~~~~-----~~----Vp~~~~~t~~eL 72 (98)
T PRK07283 18 RIISGEELVVKAIQSGQAKLVFLANDAGPNL----------------TKKVTDKSNY-----YQ----VEVSTVFSTLEL 72 (98)
T ss_pred CeeEcHHHHHHHHHcCCccEEEEeCCCCHHH----------------HHHHHHHHHH-----cC----CCEEEeCCHHHH
Confidence 3678999999999999999999999998843 3444445652 12 344434455677
Q ss_pred HHHHhcC
Q psy6066 272 TRLVVKK 278 (370)
Q Consensus 272 tklIekk 278 (370)
..++-+.
T Consensus 73 G~a~Gk~ 79 (98)
T PRK07283 73 SAAVGKP 79 (98)
T ss_pred HHHhCCC
Confidence 7787763
No 43
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=74.19 E-value=17 Score=30.93 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=27.6
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIE 222 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPie 222 (370)
.+..|.+.|-..|.++++.||++|.|..+-.
T Consensus 17 klv~G~~~v~~aik~gk~~lVI~A~D~s~~~ 47 (104)
T PRK05583 17 KLLEGYNKCEEAIKKKKVYLIIISNDISENS 47 (104)
T ss_pred CeeecHHHHHHHHHcCCceEEEEeCCCCHhH
Confidence 4678999999999999999999999998743
No 44
>PRK09190 hypothetical protein; Provisional
Probab=71.35 E-value=46 Score=32.06 Aligned_cols=72 Identities=15% Similarity=0.025 Sum_probs=46.2
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
-+..|...|-..|.++++.||++|.|..+-.... +...|+.. ........|.+...--.++
T Consensus 111 klVsG~~~V~~alk~gk~~Lvi~A~DaS~~t~kK----------------l~~~~~~~---~~~~~~~Vp~v~~~tk~eL 171 (220)
T PRK09190 111 QVVSGFEKVDAALRSGEAAALIHASDGAADGKRK----------------LDQARRAL---VHETGREIPVIGLFTAAEL 171 (220)
T ss_pred CEeecHHHHHHHHHcCCceEEEEeccCChhHHHH----------------HHHHHHhh---cccccCCccEEEecCHHHH
Confidence 4678999999999999999999999998754333 33334320 0111123455555556677
Q ss_pred HHHHhcCcceE
Q psy6066 272 TRLVVKKKASL 282 (370)
Q Consensus 272 tklIekkkA~L 282 (370)
..++.+.....
T Consensus 172 g~AlGr~~~~~ 182 (220)
T PRK09190 172 GLAFGRENVIH 182 (220)
T ss_pred HHHhCCCceeE
Confidence 77777654333
No 45
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=69.22 E-value=5.8 Score=30.16 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=37.2
Q ss_pred cccchhHHHHHHhcCc-ceEEEEecc-CCchhHHHhHHHHhhhcCCcEEEEccccHHHH
Q psy6066 264 IKQGTNTVTRLVVKKK-ASLVIIAHD-VDPIELVLFLPALCRKMGIPYCIVDSSDKANL 320 (370)
Q Consensus 264 Lk~GineVtklIekkk-A~LVVIA~D-VdPiElV~~LPaLCek~~VPY~iV~SeDkg~l 320 (370)
+..|.+-|..+++.+. ..-|++..+ .++- +.-+-.+|.+.|+++.+|+.+.+..+
T Consensus 1 lieG~~~V~eaL~~~~~i~~l~~~~~~~~~~--~~~i~~~~~~~~i~v~~v~~~~l~~l 57 (76)
T PF08032_consen 1 LIEGRHAVEEALKSGPRIKKLFVTEEKADKR--IKEILKLAKKKGIPVYEVSKKVLDKL 57 (76)
T ss_dssp EEESHHHHHHHHHCTGGEEEEEEETT---CC--THHHHHHHHHCT-EEEEE-HHHHHHC
T ss_pred CEEEHHHHHHHHcCCCCccEEEEEcCccchh--HHHHHHHHHHcCCeEEEeCHHHHHHH
Confidence 4579999999999985 555566665 2332 34567789999999999986554433
No 46
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=61.94 E-value=13 Score=31.65 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=44.5
Q ss_pred CcccccchhHHHHHHhcCcceEEEEeccCCchh------------------HHHhHHHHhhhcCCcEEEEccc
Q psy6066 261 PNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIE------------------LVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 261 p~~Lk~GineVtklIekkkA~LVVIA~DVdPiE------------------lV~~LPaLCek~~VPY~iV~Se 315 (370)
+....+|+++|.++++.|-...++|.-|..=.. ++-+|-.+++++|.-..||+++
T Consensus 19 ~~~~~yG~~eV~~Al~~GaV~~LlI~d~l~~~~~~~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~v~iis~~ 91 (113)
T PF03465_consen 19 PGLAVYGIEEVKKALEMGAVETLLISDDLFRSRDVERCKCPECGGELEVVELIEELIELAEQSGAKVEIISSE 91 (113)
T ss_dssp CSSEEESHHHHHHHHHTT-EEEEEEEHHHHTESCHHHHHSTTTHSEEEEEEHHHHHHHHHHHTTSEEEEE-TT
T ss_pred CCcEEECHHHHHHHHHhCCCcEEEEecccccccceeccccccccchhhhHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 356779999999999999999999987754332 5788899999999999999875
No 47
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=60.33 E-value=34 Score=30.48 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=45.7
Q ss_pred chhHHHHHHhcCcceEEEEecc---CCc-hhHHHhHHHHhhhcCCcEEEEccccHHHHHHHHHHHhhhhhhhHHHH
Q psy6066 267 GTNTVTRLVVKKKASLVIIAHD---VDP-IELVLFLPALCRKMGIPYCIVDSSDKANLAKLIESVKVNFTDRYDEI 338 (370)
Q Consensus 267 GineVtklIekkkA~LVVIA~D---VdP-iElV~~LPaLCek~~VPY~iV~SeDkg~lakLve~ir~nynD~ydEi 338 (370)
|-.++..+|.+|+.++||-.-| -++ ..-..-|--.|-+.||||+- ....+..++.++.. .+.|+|.
T Consensus 63 g~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T----~l~tA~a~~~al~~--~~~~~~~ 132 (142)
T PRK05234 63 GDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVAT----NRATADFLISSLLF--DDEVEIL 132 (142)
T ss_pred CchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEc----CHHHHHHHHHHHhc--ccchhhc
Confidence 5677999999999999998764 233 33355788899999999965 24444556666543 3344444
No 48
>KOG3406|consensus
Probab=57.25 E-value=8.8 Score=34.63 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=35.6
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcC
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYR 231 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~ 231 (370)
+..|+.+-++.+++.+|.|+|+|.+.|--..+.+++.+.
T Consensus 35 larGi~Ea~KaldkrqA~lcvLaencdep~yvKLVeALc 73 (134)
T KOG3406|consen 35 LARGIHEAAKALDKRQAHLCVLAENCDEPMYVKLVEALC 73 (134)
T ss_pred HHhHHHHHHHHHhhCceeEEEEeccCCchHHHHHHHHHH
Confidence 457999999999999999999999999999999988874
No 49
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=57.13 E-value=18 Score=28.74 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.6
Q ss_pred HhHHHHhhhcCCcEEE
Q psy6066 296 LFLPALCRKMGIPYCI 311 (370)
Q Consensus 296 ~~LPaLCek~~VPY~i 311 (370)
+|.-.||+++|+|+++
T Consensus 43 SH~aIlAr~~giP~iv 58 (80)
T PF00391_consen 43 SHAAILARELGIPAIV 58 (80)
T ss_dssp SHHHHHHHHTT-EEEE
T ss_pred chHHHHHHHcCCCEEE
Confidence 7888999999999976
No 50
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=56.15 E-value=28 Score=30.06 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=43.8
Q ss_pred CCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc
Q psy6066 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS 314 (370)
Q Consensus 260 kp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S 314 (370)
..+.++=|+-|.|..+-+.--..|++-..-+ .-+-||-.||+++|||...++.
T Consensus 36 diN~IKPGIgEaTRvLLRRvP~~vLVr~~~~--pd~~Hl~~LA~ekgVpVe~~~d 88 (100)
T PF15608_consen 36 DINLIKPGIGEATRVLLRRVPWKVLVRDPDD--PDLAHLLLLAEEKGVPVEVYPD 88 (100)
T ss_pred CcccccCChhHHHHHHHhcCCCEEEECCCCC--ccHHHHHHHHHHcCCcEEEeCC
Confidence 3578888999999999999988887764434 3478999999999999988763
No 51
>KOG1615|consensus
Probab=54.77 E-value=21 Score=34.75 Aligned_cols=70 Identities=16% Similarity=0.334 Sum_probs=51.6
Q ss_pred CCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcE--EEEcc------------------ccHH
Q psy6066 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPY--CIVDS------------------SDKA 318 (370)
Q Consensus 259 kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY--~iV~S------------------eDkg 318 (370)
++|..|-.|+.+..+.++..-++++||.+- ...++-......|+|| |+-|. -|-|
T Consensus 84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGG-----F~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsg 158 (227)
T KOG1615|consen 84 KQKPTLTPGIRELVSRLHARGTQVYLISGG-----FRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSG 158 (227)
T ss_pred cCCCccCCCHHHHHHHHHHcCCeEEEEcCC-----hHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCC
Confidence 456788899999999999999999999995 4455566788999999 76411 1222
Q ss_pred HHHHHHHHHhhhhhh
Q psy6066 319 NLAKLIESVKVNFTD 333 (370)
Q Consensus 319 ~lakLve~ir~nynD 333 (370)
.-++.+..++.|||+
T Consensus 159 gKa~~i~~lrk~~~~ 173 (227)
T KOG1615|consen 159 GKAEVIALLRKNYNY 173 (227)
T ss_pred ccHHHHHHHHhCCCh
Confidence 234566667778864
No 52
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=54.42 E-value=20 Score=31.27 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=38.9
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se 315 (370)
..+..|+.++..-+++....|+|+.+| ....|+.||++.|+--++.+.+
T Consensus 49 ~Fl~~sL~~L~~~L~~~g~~L~v~~g~-----~~~~l~~l~~~~~~~~V~~~~~ 97 (165)
T PF00875_consen 49 RFLLESLADLQESLRKLGIPLLVLRGD-----PEEVLPELAKEYGATAVYFNEE 97 (165)
T ss_dssp HHHHHHHHHHHHHHHHTTS-EEEEESS-----HHHHHHHHHHHHTESEEEEE--
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEecc-----hHHHHHHHHHhcCcCeeEeccc
Confidence 456678999999999999999999997 4557889999999998888643
No 53
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=52.09 E-value=25 Score=29.67 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=37.1
Q ss_pred cccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEc
Q psy6066 264 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVD 313 (370)
Q Consensus 264 Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~ 313 (370)
+....+++...+++..++-|+||-+-+..+-+..+=.-|+++||.+.+||
T Consensus 126 ~lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 126 VLGDLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRVVP 175 (175)
T ss_dssp EE--GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE--
T ss_pred eEcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEEeC
Confidence 34568999999999999999999999999999999999999999998875
No 54
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=49.01 E-value=2e+02 Score=27.69 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=65.3
Q ss_pred cccccchhhhHHhhcccceEEEEec----CCChHHHHHHh-h---hcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcc
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAH----DVDPIELFKFL-E---KYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQ 263 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~----dVdPielv~~L-p---ky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~ 263 (370)
+-..|..++..++.+++--+++.+| |+-..-+.... + .|+|.... .-.++..+.+.+. |-.-. .
T Consensus 97 v~i~g~e~l~~a~~~g~gvI~~t~H~GnwE~~~~~l~~~~~~~~~v~~~~~n~-~~~~~~~~~R~~~-g~~~i------~ 168 (298)
T PRK08419 97 VTFINEENLLDALKKKRPIIVTTAHYGYWELFSLALAAYYGAVSIVGRLLKSA-PINEMISKRREQF-GIELI------D 168 (298)
T ss_pred EEEECHHHHHHHHHcCCCEEEEeeCccHHHHHHHHHHhcCCCeEEEEeCCCCh-HHHHHHHHHHHHc-CCeeE------E
Confidence 3457889999988888877777777 22222222222 1 25666642 2344444455322 22111 1
Q ss_pred cccchhHHHHHHhcCcceEEEEeccCCch--h-H-----------HHhHHHHhhhcCCcEEEE
Q psy6066 264 IKQGTNTVTRLVVKKKASLVIIAHDVDPI--E-L-----------VLFLPALCRKMGIPYCIV 312 (370)
Q Consensus 264 Lk~GineVtklIekkkA~LVVIA~DVdPi--E-l-----------V~~LPaLCek~~VPY~iV 312 (370)
-..|+.++.+++++|. +|+|..|-+|- + + ..-...|+.+.|+|.+.|
T Consensus 169 ~~~~~r~~l~~Lk~g~--~v~il~Dq~~~~~~gv~v~FfG~~a~~~~g~a~LA~k~~apvvpv 229 (298)
T PRK08419 169 KKGAMKELLKALKQGR--ALGILVDQNVVPKEGVEVKFFNKRVTHTTIASILARRYNALIIPV 229 (298)
T ss_pred CccHHHHHHHHHHcCC--eEEEEecCCCCCCCCeEEecCCCCcccchhHHHHHHHHCCCEEEE
Confidence 1347899999999886 77888888753 1 1 112236999999988766
No 55
>PF08228 RNase_P_pop3: RNase P subunit Pop3; InterPro: IPR013241 This family of fungal proteins form a subunit of RNase P, the ribonucleoprotein enzyme that cleaves the leader sequence of precursor tRNAs to generate mature tRNAs. The structure of Pop3 has been assigned the L7Ae/L30e fold []. This RNA-binding fold is also present in human RNase P subunit Rpp38, raising the possibility that Pop3p and Rpp38 are functional homologues.
Probab=48.46 E-value=18 Score=33.23 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=32.3
Q ss_pred CCccccccchhhhHHhhcccce--EEEEec-CCChHHHHHHhhhc
Q psy6066 189 KPNQIKQGTNTVTRLVVKKKAS--LVIIAH-DVDPIELFKFLEKY 230 (370)
Q Consensus 189 kp~~i~~Gin~Vt~lIE~kka~--LVvIA~-dVdPielv~~Lpky 230 (370)
.+.-|-.|+|.||+..|...++ +|+++. | +|.-+..++|-+
T Consensus 52 ~~~~v~~GfNsi~~~Le~~~~~~~~vFVcr~D-~ps~L~~h~P~L 95 (158)
T PF08228_consen 52 WPWGVTVGFNSIVRYLECQASDNVYVFVCRSD-QPSILTSHFPQL 95 (158)
T ss_pred CCccEEEehHHHHHHHhcccCCCeEEEEECCC-CcHHHHHHHHHH
Confidence 4567899999999999954442 555555 7 899999999996
No 56
>PRK04011 peptide chain release factor 1; Provisional
Probab=47.52 E-value=48 Score=34.35 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=41.6
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccC-----------------------------------------CchhHHHhHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDV-----------------------------------------DPIELVLFLPA 300 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DV-----------------------------------------dPiElV~~LPa 300 (370)
....+|+.+|.++++.|.+..++|.-|. +..+++.+|.-
T Consensus 295 g~avyG~~~V~~Ale~GAVetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~v~~l~e 374 (411)
T PRK04011 295 GLAVYGEEEVRKALEMGAVDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEIVEEEDIIEELSE 374 (411)
T ss_pred CcEEEcHHHHHHHHHcCCceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCcccccchhhhHHHHHHH
Confidence 4567899999999999999888887543 23356777777
Q ss_pred HhhhcCCcEEEEccc
Q psy6066 301 LCRKMGIPYCIVDSS 315 (370)
Q Consensus 301 LCek~~VPY~iV~Se 315 (370)
+++++|.-..||+++
T Consensus 375 ~a~~~g~~v~iis~~ 389 (411)
T PRK04011 375 LAEQSGTKVEVISTD 389 (411)
T ss_pred HHHHcCCEEEEECCC
Confidence 888888887777664
No 57
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=41.99 E-value=64 Score=33.47 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=41.9
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCc-----------------------------------------hhHHHhHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDP-----------------------------------------IELVLFLPA 300 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdP-----------------------------------------iElV~~LPa 300 (370)
....+|+.+|.++++.|.+..++|.-|..= .+++.+|.-
T Consensus 291 G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ve~L~e 370 (409)
T TIGR00108 291 GLACYGEDEVLKALDLGAVETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQEMDVVEERDLIEWLSE 370 (409)
T ss_pred CcEEeCHHHHHHHHHhCCCcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCccccchhhhhHHHHHHH
Confidence 445689999999999999999988887621 245677777
Q ss_pred HhhhcCCcEEEEccc
Q psy6066 301 LCRKMGIPYCIVDSS 315 (370)
Q Consensus 301 LCek~~VPY~iV~Se 315 (370)
+|+++|.-..||+++
T Consensus 371 ~a~~~Ga~V~iiS~~ 385 (409)
T TIGR00108 371 LAENFGAKLEFISTE 385 (409)
T ss_pred HHHHcCCEEEEECCC
Confidence 777777777777664
No 58
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=40.98 E-value=1e+02 Score=23.99 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=34.3
Q ss_pred CcceEEEEeccCCchhHHHhHHHHhhh--cCCcEEEEccccHHHHHHHHHHHhhhh
Q psy6066 278 KKASLVIIAHDVDPIELVLFLPALCRK--MGIPYCIVDSSDKANLAKLIESVKVNF 331 (370)
Q Consensus 278 kkA~LVVIA~DVdPiElV~~LPaLCek--~~VPY~iV~SeDkg~lakLve~ir~ny 331 (370)
....+..+-.|.++.+.-- +-.+... +.||-++|+.+-.|.++.|++..+++|
T Consensus 29 ~~i~~~~idi~~~~~~~~e-l~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~~~ 83 (85)
T PRK11200 29 DDFDYRYVDIHAEGISKAD-LEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKENL 83 (85)
T ss_pred cCCcEEEEECCCChHHHHH-HHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHHhc
Confidence 4555666655555543222 2233332 679999998888888888888887776
No 59
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=38.30 E-value=84 Score=27.51 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=35.1
Q ss_pred hhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcccc
Q psy6066 268 TNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSD 316 (370)
Q Consensus 268 ineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~SeD 316 (370)
..++.+.+.+...-.+.|.++++.- .....=-||.+.|+||.+|++..
T Consensus 51 ~~~~~~~l~~~~~~~l~ing~l~~~-~~~~YiklA~~~~~~fTiv~~~~ 98 (120)
T PF07997_consen 51 YPEFEQALKDYPNYKLKINGNLDYS-FQSKYIKLANKHGIPFTIVNDPE 98 (120)
T ss_dssp -HHHHHHHHC-SSEEEEEETTS-HH-HHHHHHHHHHHTT--EEEE---S
T ss_pred HHHHHHHHhhCCCeEEEEcCCCCHH-HHHHHHHHHHHcCCCEEEeCCCC
Confidence 4788889999999999999999765 66777789999999999998753
No 60
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=38.23 E-value=86 Score=27.04 Aligned_cols=49 Identities=20% Similarity=0.423 Sum_probs=37.6
Q ss_pred ccchhHHHHHHhcCcceEEEEeccCC-----chhHHHhHHHHhhhcCCcEEEEcc
Q psy6066 265 KQGTNTVTRLVVKKKASLVIIAHDVD-----PIELVLFLPALCRKMGIPYCIVDS 314 (370)
Q Consensus 265 k~GineVtklIekkkA~LVVIA~DVd-----PiElV~~LPaLCek~~VPY~iV~S 314 (370)
+-|++.+...++.|+...||+. ++| ..++..++-.||+++||.+++++.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~-~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~~~ 107 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVK-DMSRLGRNYLKVGLYMEILFPKKGVRFIAIND 107 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEe-ccchhccCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3478999999999988876654 343 456677788888888999999853
No 61
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=37.67 E-value=48 Score=26.38 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=35.7
Q ss_pred cchhHHHHHHhcCcceEEEEecc---CCchhHHHhHHHHhhhcCCcEE
Q psy6066 266 QGTNTVTRLVVKKKASLVIIAHD---VDPIELVLFLPALCRKMGIPYC 310 (370)
Q Consensus 266 ~GineVtklIekkkA~LVVIA~D---VdPiElV~~LPaLCek~~VPY~ 310 (370)
-|..++..+++.|+..+||-.-+ -++.+-...+.-+|.+.||||.
T Consensus 42 ~~~~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 42 GGILAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CCCHHHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 35567999999999999988653 3445556688999999999985
No 62
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=36.17 E-value=67 Score=31.09 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=26.5
Q ss_pred HHHHHHHhhccCCCCCcc---ccchhcchhhHHHHHHHhh
Q psy6066 121 QRQKAVLQKRLKVPPPVH---QFTQAVDKQTASQLFKFLE 157 (370)
Q Consensus 121 QrQraiL~~~lKipp~i~---qf~~~l~~~~~~~l~~l~~ 157 (370)
|+||...+.++=-.|.|- -=|-.||.+++..+++++.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~ 186 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLR 186 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHH
Confidence 788888888877766653 1156778888888888774
No 63
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=36.14 E-value=40 Score=34.19 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=57.8
Q ss_pred chhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE----------cc--ccHHHHHHHHHHHhhh-hhh
Q psy6066 267 GTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV----------DS--SDKANLAKLIESVKVN-FTD 333 (370)
Q Consensus 267 GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV----------~S--eDkg~lakLve~ir~n-ynD 333 (370)
|+|-+...+..+. +.+.+.-|++-|+-.+|+-.|+-.+=+ ++ ||-+.+-.|++++.+. |.|
T Consensus 219 gv~~~~~fl~~~~------~~~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~~~p~gled~~~l~~l~~~L~~~G~~e 292 (313)
T COG2355 219 GVNFIPAFLRPGG------AARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGTGPPDGLEDVGKLPNLTAALIERGYSE 292 (313)
T ss_pred EEEeehhhccCCC------CCCCCHHHHHHHHHHHHHhcCcceeEecccccCCCCCchhhcChhHHHHHHHHHHHcCCCH
Confidence 6666666666422 566677899999999999999888766 23 6888889999988776 988
Q ss_pred hHHHHhhhhCCCCCC
Q psy6066 334 RYDEIRRQWGGGSLG 348 (370)
Q Consensus 334 ~ydEi~~~wGG~ilg 348 (370)
+++.+-||||.+-
T Consensus 293 --~~i~~i~~~N~lR 305 (313)
T COG2355 293 --EEIEKIAGENWLR 305 (313)
T ss_pred --HHHHHHHHHhHHH
Confidence 5899999998753
No 64
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=35.69 E-value=3.4e+02 Score=26.46 Aligned_cols=112 Identities=17% Similarity=0.085 Sum_probs=69.4
Q ss_pred ccccccchhhhHHhhcccceEEEEecCCChHHHHHHhh--------hcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCc
Q psy6066 191 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLE--------KYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPN 262 (370)
Q Consensus 191 ~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lp--------ky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~ 262 (370)
.+-..|..++..++.+++--+++.+|-=+=.-+..++. .|+|.++. .-.++..+.+.+ .|-.-++. .
T Consensus 116 ~~~~~g~e~l~~a~a~gkgvIllt~H~GnWE~~~~~l~~~~~~~~~vyr~~~n~-~~d~~i~~~R~~-~g~~~i~~-~-- 190 (308)
T PRK06553 116 RVEVRGIEIFERLRDDGKPALIFTAHLGNWELLAIAAAAFGLDVTVLFRPPNNP-YAARKVLEARRT-TMGGLVPS-G-- 190 (308)
T ss_pred eeEecCHHHHHHHHhcCCCEEEEeeCchHHHHHHHHHHHcCCceEEEEecCCCh-HHHHHHHHHHHH-cCCCcccC-C--
Confidence 34457999999999888887777777433322222222 25665532 234455555543 22211111 1
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchhHHHh-------------HHHHhhhcCCcEEEE
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLF-------------LPALCRKMGIPYCIV 312 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~-------------LPaLCek~~VPY~iV 312 (370)
..|+.++.+.+.+|. +|.|..|-+|-+ -++ ...|+.+.|.|.+.+
T Consensus 191 --~~~~r~l~r~Lk~g~--~v~il~DQ~~~~-gv~v~FFG~~a~t~~~~a~LA~~~~apVvp~ 248 (308)
T PRK06553 191 --AGAAFALAGVLERGG--HVGMLVDQKFTR-GVEVTFFGRPVKTNPLLAKLARQYDCPVHGA 248 (308)
T ss_pred --ChHHHHHHHHHHcCC--eEEEEecccCCC-CceeccCCCcCCCCchHHHHHHHHCCCEEEE
Confidence 246889999998885 888999998743 232 236889999988876
No 65
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=35.28 E-value=98 Score=32.15 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=24.0
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccC
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDV 289 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DV 289 (370)
....+|+.+|.++++.|.+..++|.-|.
T Consensus 287 g~avyG~~eV~~ALe~GAVetLLV~d~l 314 (403)
T TIGR03676 287 GLAAYGEEEVRKALEMGAVDTLLISEDL 314 (403)
T ss_pred CcEEEcHHHHHHHHHhCCCcEEEEEccc
Confidence 4456899999999999999988887665
No 66
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=32.99 E-value=1.4e+02 Score=25.32 Aligned_cols=44 Identities=14% Similarity=0.353 Sum_probs=25.0
Q ss_pred hhHHHHHHhcCcceEEEEeccCCc-------hhHHHhHHHHhhhcCCcEEE
Q psy6066 268 TNTVTRLVVKKKASLVIIAHDVDP-------IELVLFLPALCRKMGIPYCI 311 (370)
Q Consensus 268 ineVtklIekkkA~LVVIA~DVdP-------iElV~~LPaLCek~~VPY~i 311 (370)
+.++...++...+.++++.--..| -.+...+..+|++.+++|+-
T Consensus 90 l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~d 140 (177)
T cd01822 90 LRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVPLVP 140 (177)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCcEec
Confidence 444444444445555555321111 24556677899999998864
No 67
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=32.54 E-value=2.4e+02 Score=24.89 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=39.2
Q ss_pred hhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE-ccccH--HHHHHHHHHHhhhh
Q psy6066 268 TNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-DSSDK--ANLAKLIESVKVNF 331 (370)
Q Consensus 268 ineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-~SeDk--g~lakLve~ir~ny 331 (370)
+.++...+..=.+-++|+.++-.+.....-+-.+|..+++|+++| |.=|+ ..+...++.+.+.|
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKL 150 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHH
T ss_pred eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHh
Confidence 445555666555666677666556666777788899999998877 33355 33444444444333
No 68
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=32.31 E-value=2.1e+02 Score=26.83 Aligned_cols=84 Identities=21% Similarity=0.284 Sum_probs=45.6
Q ss_pred eEEEEeccCCchhHHHhHHHHhhhcCCcEEE----------EccccHHHHHHHHHHH--hhhhhhhHHHHhhhhCCCCCC
Q psy6066 281 SLVIIAHDVDPIELVLFLPALCRKMGIPYCI----------VDSSDKANLAKLIESV--KVNFTDRYDEIRRQWGGGSLG 348 (370)
Q Consensus 281 ~LVVIA~DVdPiElV~~LPaLCek~~VPY~i----------V~SeDkg~lakLve~i--r~nynD~ydEi~~~wGG~ilg 348 (370)
.-+++-++.|+-| ...+=..-.+.||||-. |+.+|...+--++..- -......|++ -+.++-||
T Consensus 27 ~y~~L~~~l~~~d-a~~i~~~L~~~gI~y~~~~~g~~~~I~Vp~~~~~~ar~~La~~glp~~~~~g~~~---~~~~~~~~ 102 (206)
T PF01514_consen 27 DYVVLYSGLDEED-ANEIVAALDENGIPYKLSDDGGTWTILVPEDQVARARMLLASQGLPKSGFSGFEE---LFDNSSFG 102 (206)
T ss_dssp --EEEEEEE-HHH-HHHHHHHHHHTT--EEEEE-TTSEEEEEEGGGHHHHHHHHHHTT-S------CCH---HTTT-S--
T ss_pred CceecccCCCHHH-HHHHHHHHHHCCCCcEecCCCCeeEEEeCHHHHHHHHHHHHHcCCCCCCCCCHHH---HhccCCCC
Confidence 3566677889998 44555566677999954 5555655543333221 0111233433 34677888
Q ss_pred cchHHHHHHHHHHHHhHHhh
Q psy6066 349 SKSAARIAKLERAKAKELAQ 368 (370)
Q Consensus 349 ~ks~~~~~~~~~~~~~~~~~ 368 (370)
.-...+-.+..+|...||++
T Consensus 103 ~T~~~~~~~~~~ale~eL~~ 122 (206)
T PF01514_consen 103 TTDFEEKVNYQRALEGELER 122 (206)
T ss_dssp -SHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999876
No 69
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=31.28 E-value=78 Score=30.57 Aligned_cols=38 Identities=32% Similarity=0.530 Sum_probs=29.3
Q ss_pred cceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccccHH
Q psy6066 279 KASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKA 318 (370)
Q Consensus 279 kA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~SeDkg 318 (370)
.+.|+ |+..++| |+..-||-.|.+.|+.++||++++-.
T Consensus 51 ~~Dl~-I~y~lHP-Dl~~~l~~~~~e~g~kavIvp~~~~~ 88 (217)
T PF02593_consen 51 EADLL-IAYGLHP-DLTYELPEIAKEAGVKAVIVPSESPK 88 (217)
T ss_pred CCCEE-EEeccCc-hhHHHHHHHHHHcCCCEEEEecCCCc
Confidence 34455 4545555 88889999999999999999988655
No 70
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=30.87 E-value=15 Score=40.19 Aligned_cols=13 Identities=31% Similarity=1.071 Sum_probs=3.7
Q ss_pred cccccccchhhhh
Q psy6066 58 LSRFVKWPKYIRI 70 (370)
Q Consensus 58 l~rfvkwP~yir~ 70 (370)
...|+|||-||||
T Consensus 540 ~e~YiKWPWyVWL 552 (610)
T PF01601_consen 540 YETYIKWPWYVWL 552 (610)
T ss_dssp CCCHH--------
T ss_pred eeEEeehHHHHHH
Confidence 4679999999997
No 71
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.75 E-value=4.2e+02 Score=25.63 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=65.0
Q ss_pred ccccccchhhhHHhhcccceEEEEecCCChHHH-----HHHhh----hcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q psy6066 191 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIEL-----FKFLE----KYRPESWEAKKQRLKARAEKKIAKKEDTPTKKP 261 (370)
Q Consensus 191 ~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPiel-----v~~Lp----ky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp 261 (370)
.+...|..++..+ +++--+++.+|--+ -|+ ..+.+ .|+|... ..-.++..+.+++. |-.-.+. .
T Consensus 99 ~v~~~g~e~l~~~--~gkgvIl~t~H~Gn-wE~~~~~l~~~~~~~~~vyr~~~n-~~~d~~~~~~R~~~-g~~~i~~-~- 171 (290)
T PRK06628 99 RIEIIGIENIKKL--EGQPFLLFSGHFAN-WDISLKILHKFYPKVAVIYRKANN-PYVNKLVNESRAGD-KLRLIPK-G- 171 (290)
T ss_pred eEEEeCHHHHHHh--cCCcEEEEEecchH-HHHHHHHHHHhCCCeeEEEecCCC-HHHHHHHHHHHHhc-CCceecC-C-
Confidence 3455788888886 45666666677333 232 22222 3555543 23445555566432 2211111 1
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHh-------------HHHHhhhcCCcEEEE
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLF-------------LPALCRKMGIPYCIV 312 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~-------------LPaLCek~~VPY~iV 312 (370)
..|+.++.+.+.+|. +|.|..|-||-+ -++ ...|+.+.|.|.+.+
T Consensus 172 ---~~~~r~l~k~Lk~g~--~v~il~Dq~~~~-gv~v~FFG~~a~t~~~~a~LA~~~~apvv~~ 229 (290)
T PRK06628 172 ---PEGSRALVRAIKESE--SIVMLVDQKMND-GIEVPFLGHPAMTASAIAKIALQYKYPIIPC 229 (290)
T ss_pred ---CchHHHHHHHHHcCC--eEEEEecccCCC-CeeeecCCCccccchHHHHHHHHHCCCEEEE
Confidence 247899999998885 899999999743 122 236888999998876
No 72
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=29.99 E-value=96 Score=26.33 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=39.4
Q ss_pred hHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccccHHHHHHHHHHH
Q psy6066 269 NTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKANLAKLIESV 327 (370)
Q Consensus 269 neVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~SeDkg~lakLve~i 327 (370)
+-+..+.+.|-++|++-.++--+ ++--.+-.+|++.++|.+.++.+ -.|..+++.+
T Consensus 63 ~~i~~L~~~~~agL~i~~~~~~~-~iP~~~i~~A~~~~lPli~ip~~--~~f~~I~~~v 118 (123)
T PF07905_consen 63 EFIRELAEKGAAGLGIKTGRYLD-EIPEEIIELADELGLPLIEIPWE--VPFSDITREV 118 (123)
T ss_pred HHHHHHHHCCCeEEEEeccCccc-cCCHHHHHHHHHcCCCEEEeCCC--CCHHHHHHHH
Confidence 45677888899999986663333 55566668999999999999873 1244444443
No 73
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=29.95 E-value=1.7e+02 Score=26.13 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=41.7
Q ss_pred EEEEeccCCchhHHHhHHHHhhhcC-CcEEEEccccHHHHHHHHHHHhh----hhh-hhHHHHhhhhCCCCCCcchHH
Q psy6066 282 LVIIAHDVDPIELVLFLPALCRKMG-IPYCIVDSSDKANLAKLIESVKV----NFT-DRYDEIRRQWGGGSLGSKSAA 353 (370)
Q Consensus 282 LVVIA~DVdPiElV~~LPaLCek~~-VPY~iV~SeDkg~lakLve~ir~----nyn-D~ydEi~~~wGG~ilg~ks~~ 353 (370)
.+|++.+..|.++-..++.|+.... ...+.+++=+..+...+++.... .+. +-.+.+..+|+||+..-..+-
T Consensus 125 ~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 125 RLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 5778888888776655588887654 33444554222333333332211 122 345678889999987766543
No 74
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=29.73 E-value=1.7e+02 Score=27.58 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=30.7
Q ss_pred HHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc-cHH--HHHHHHHHHhhhh
Q psy6066 270 TVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS-DKA--NLAKLIESVKVNF 331 (370)
Q Consensus 270 eVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se-Dkg--~lakLve~ir~ny 331 (370)
++...++.-.+-++|+.+.-....-...+=.++.+.++|.++|-++ |+. .+..+++.+++.|
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~ 144 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKL 144 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHH
Confidence 4444555444555555432222222222334677889998887544 653 2334444444433
No 75
>KOG2988|consensus
Probab=29.22 E-value=50 Score=29.15 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=25.3
Q ss_pred cchhHHHHHHhcCcceEEEEeccCCchh
Q psy6066 266 QGTNTVTRLVVKKKASLVIIAHDVDPIE 293 (370)
Q Consensus 266 ~GineVtklIekkkA~LVVIA~DVdPiE 293 (370)
-|-+...+.++.|+|.|++||.+|-|+-
T Consensus 29 lgyK~T~k~~r~gkakL~~is~n~p~lr 56 (112)
T KOG2988|consen 29 LGYKQTLKSLRQGKAKLIIISSNCPPLR 56 (112)
T ss_pred echHHHHHHHHhccceEEEeecCCCCcc
Confidence 4889999999999999999999998753
No 76
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.37 E-value=1.6e+02 Score=26.20 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.3
Q ss_pred hHHHhHHHHhhhcCCcEEE
Q psy6066 293 ELVLFLPALCRKMGIPYCI 311 (370)
Q Consensus 293 ElV~~LPaLCek~~VPY~i 311 (370)
++...+..+|+++|++|+-
T Consensus 156 ~~~~~~~~~a~~~~~~~iD 174 (208)
T cd01839 156 GLADAYRALAEELGCHFFD 174 (208)
T ss_pred HHHHHHHHHHHHhCCCEEc
Confidence 5566788999999999864
No 77
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=28.04 E-value=88 Score=34.07 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=31.6
Q ss_pred HHHHHHHhhccCCCCCcccc---chhcchhhHHHHHHHhh
Q psy6066 121 QRQKAVLQKRLKVPPPVHQF---TQAVDKQTASQLFKFLE 157 (370)
Q Consensus 121 QrQraiL~~~lKipp~i~qf---~~~l~~~~~~~l~~l~~ 157 (370)
||||+.+..++=.-|.+-=+ |+.||-.+..|+++++.
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk 198 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLK 198 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHH
Confidence 79999999999988876444 78999999999999974
No 78
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=27.45 E-value=1.2e+02 Score=29.64 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=40.6
Q ss_pred CCCcccccc-------hhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc
Q psy6066 259 KKPNQIKQG-------TNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 259 kkp~~Lk~G-------ineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se 315 (370)
=+|.++.+| ++.....+++ +.++|+.+--.+......++.++...|.+|++||.+
T Consensus 189 lrP~Vv~FgE~lp~~~~~~a~~~~~~--~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~ 250 (285)
T PRK05333 189 LKPDVVFFGENVPRERVAAARAALDA--ADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLG 250 (285)
T ss_pred ccCCEEEcCCCCCHHHHHHHHHHHhc--CCEEEEECcCceecchhhhHHHHHHCCCeEEEECCC
Confidence 367777677 3445555654 667777776777777778888999999999999765
No 79
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=26.40 E-value=1.7e+02 Score=29.67 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=45.1
Q ss_pred CcccccchhHHHHHHhcCcceEEEEeccC--CchhHHHhHHHHhhhcCCcEEEEccc-cHH
Q psy6066 261 PNQIKQGTNTVTRLVVKKKASLVIIAHDV--DPIELVLFLPALCRKMGIPYCIVDSS-DKA 318 (370)
Q Consensus 261 p~~Lk~GineVtklIekkkA~LVVIA~DV--dPiElV~~LPaLCek~~VPY~iV~Se-Dkg 318 (370)
+....+|..+|.++++.|-..-++|+-++ ..-+ +.-|--.++++|.-.++++|. +-|
T Consensus 275 ~~~~~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~-~~~l~~~v~~~gg~V~i~Ss~~e~G 334 (351)
T TIGR00111 275 GDKAVYGEDEVVKAAEYGAIEYLLVTDKVLVQREE-IEKLLDSVESMGGKVVILSTEHELG 334 (351)
T ss_pred CCeEEECHHHHHHHHHcCCceEEEEecchhhhHHH-HHHHHHHHHHcCCEEEEEcCCCccH
Confidence 34567999999999999999999999877 2223 555677889999999999875 444
No 80
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=26.31 E-value=1.4e+02 Score=27.69 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=31.7
Q ss_pred hhHHHHHHhcCcceEEEEeccCCc--hhHHHhHHHHhhhcCCcEEEEc
Q psy6066 268 TNTVTRLVVKKKASLVIIAHDVDP--IELVLFLPALCRKMGIPYCIVD 313 (370)
Q Consensus 268 ineVtklIekkkA~LVVIA~DVdP--iElV~~LPaLCek~~VPY~iV~ 313 (370)
+..+...+.+.++.+||+++|+.. .+..-++-.|++..++|+++|+
T Consensus 21 l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~ 68 (239)
T TIGR03729 21 LETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNA 68 (239)
T ss_pred HHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEEC
Confidence 344555566667999999999864 3344455566665678998884
No 81
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.17 E-value=5.9e+02 Score=24.43 Aligned_cols=112 Identities=8% Similarity=0.018 Sum_probs=65.2
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHH-Hhhh-------cCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcc
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFK-FLEK-------YRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQ 263 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~-~Lpk-------y~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~ 263 (370)
+...|..++..++++++--+++.+|-=+= |+.. ++.. |+|.... .-.++..+.+.+- |-.... .
T Consensus 90 ~~~~~~e~l~~~~~~gkgvI~~t~H~GnW-El~~~~~~~~~~~~~i~r~~~n~-~~d~~~~~~R~~~-g~~~i~-----~ 161 (289)
T PRK08706 90 VRYRNKHYLDDALAAGEKVIILYPHFTAF-EMAVYALNQDVPLISMYSHQKNK-ILDEQILKGRNRY-HNVFLI-----G 161 (289)
T ss_pred eEEECHHHHHHHHhCCCCEEEEecchhHH-HHHHHHHHccCCCcEEeeCCCCH-HHHHHHHHHHhcc-CCcccc-----c
Confidence 44578889999988888888887873332 3322 2222 4444422 2344555555321 211111 1
Q ss_pred cccchhHHHHHHhcCcceEEEEeccCCch-h-------------HHHhHHHHhhhcCCcEEEE
Q psy6066 264 IKQGTNTVTRLVVKKKASLVIIAHDVDPI-E-------------LVLFLPALCRKMGIPYCIV 312 (370)
Q Consensus 264 Lk~GineVtklIekkkA~LVVIA~DVdPi-E-------------lV~~LPaLCek~~VPY~iV 312 (370)
-..|+.++.+++.++. .+|++..|-+|- + ...-...|..+.|+|.+.|
T Consensus 162 ~~~~~r~i~k~L~k~~-~~v~~l~Dq~~~~~~gv~v~FfG~~a~t~~g~a~LA~~~~apvvp~ 223 (289)
T PRK08706 162 RTEGLRALVKQFRKSS-APFLYLPDQDFGRNDSVFVDFFGIQTATITGLSRIAALANAKVIPA 223 (289)
T ss_pred ChhhHHHHHHHHHhCC-ceEEEeCCCCCCCCCCEEeccCCccchhhhHHHHHHHhcCCeEEEE
Confidence 1348999999996554 566666888862 2 1122237888899998876
No 82
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.49 E-value=1.1e+02 Score=30.28 Aligned_cols=62 Identities=26% Similarity=0.458 Sum_probs=43.6
Q ss_pred chhHHH-HHHHHHHHhhccCCCCCcc----ccchhcchhhHHHHHHHhhhcCcchHHHHHHHHHHHHHHHhhccCCCCCC
Q psy6066 114 WPKYIR-IQRQKAVLQKRLKVPPPVH----QFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTK 188 (370)
Q Consensus 114 wPkYir-IQrQraiL~~~lKipp~i~----qf~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a~a~~ka~~k~~~~~k 188 (370)
||.-.. =||||+.++.++=..|.+- -| .+||..|..++-+.
T Consensus 127 ~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF-gALDalTR~~lq~~--------------------------------- 172 (248)
T COG1116 127 YPHQLSGGMRQRVAIARALATRPKLLLLDEPF-GALDALTREELQDE--------------------------------- 172 (248)
T ss_pred CccccChHHHHHHHHHHHHhcCCCEEEEcCCc-chhhHHHHHHHHHH---------------------------------
Confidence 676554 4899999999999988762 22 34676776554333
Q ss_pred CCccccccchhhhHHhhcccceEEEEecCCCh
Q psy6066 189 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDP 220 (370)
Q Consensus 189 kp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdP 220 (370)
+..+.++.+...|+|+|||+-
T Consensus 173 -----------l~~lw~~~~~TvllVTHdi~E 193 (248)
T COG1116 173 -----------LLRLWEETRKTVLLVTHDVDE 193 (248)
T ss_pred -----------HHHHHHhhCCEEEEEeCCHHH
Confidence 334556667889999999875
No 83
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=25.46 E-value=1.2e+02 Score=25.21 Aligned_cols=45 Identities=29% Similarity=0.210 Sum_probs=34.0
Q ss_pred chhHHHHHHhc-CcceEEEEeccCC----chhHHHhHHHHhhhcCCcEEE
Q psy6066 267 GTNTVTRLVVK-KKASLVIIAHDVD----PIELVLFLPALCRKMGIPYCI 311 (370)
Q Consensus 267 GineVtklIek-kkA~LVVIA~DVd----PiElV~~LPaLCek~~VPY~i 311 (370)
|-.++..+|.+ |+..+||-.-|-. ..+-..-|--+|-+.||||+-
T Consensus 55 g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 55 GEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred CCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 55779999999 9999998865411 233355677889999999964
No 84
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=24.77 E-value=2.4e+02 Score=29.82 Aligned_cols=39 Identities=36% Similarity=0.419 Sum_probs=35.5
Q ss_pred hcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc
Q psy6066 276 VKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS 314 (370)
Q Consensus 276 ekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S 314 (370)
..|+-.+-+|+-|..=|-=+--|-..|+-||||.+.|.+
T Consensus 230 ~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~ 268 (407)
T COG1419 230 LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYS 268 (407)
T ss_pred hccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecC
Confidence 678888899999999999999999999999999999943
No 85
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=24.69 E-value=4e+02 Score=22.00 Aligned_cols=73 Identities=19% Similarity=0.389 Sum_probs=44.9
Q ss_pred ccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEe
Q psy6066 207 KKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIA 286 (370)
Q Consensus 207 kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA 286 (370)
..++.++|.-|++-.+....+..+. ..+... . . ..+-+||++
T Consensus 70 ~~~~~~ii~fd~~~~~S~~~~~~~~--------~~i~~~----~-------------------------~-~~~~iivvg 111 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEESFENLKKWL--------EEIQKY----K-------------------------P-EDIPIIVVG 111 (162)
T ss_dssp TTESEEEEEEETTBHHHHHTHHHHH--------HHHHHH----S-------------------------T-TTSEEEEEE
T ss_pred ccccccccccccccccccccccccc--------cccccc----c-------------------------c-ccccceeee
Confidence 4688899998998888777776652 111110 0 0 223466666
Q ss_pred ccCCchh--HHH--hHHHHhhhcCCcEEEEccccH
Q psy6066 287 HDVDPIE--LVL--FLPALCRKMGIPYCIVDSSDK 317 (370)
Q Consensus 287 ~DVdPiE--lV~--~LPaLCek~~VPY~iV~SeDk 317 (370)
...|-.+ -+. -.-.+|++.+++|+-+.+.+.
T Consensus 112 ~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 146 (162)
T PF00071_consen 112 NKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNG 146 (162)
T ss_dssp ETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTT
T ss_pred ccccccccccchhhHHHHHHHHhCCEEEEEECCCC
Confidence 5555443 111 234689999999999988653
No 86
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.37 E-value=2.2e+02 Score=23.61 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=34.6
Q ss_pred HHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc--cHHHHHHHHHHHh
Q psy6066 274 LVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS--DKANLAKLIESVK 328 (370)
Q Consensus 274 lIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se--Dkg~lakLve~ir 328 (370)
......+..|.|+.|- .|..+|.+.|.+.+.|++. +...|..|+.+.-
T Consensus 65 ~a~~~g~~iI~IT~~~-------~l~~~~~~~~~~~~~~p~~~~~r~s~~~~~~~~~ 114 (119)
T cd05017 65 QAKERGAKIVAITSGG-------KLLEMAREHGVPVIIIPKGLQPRAAFPYLFTALL 114 (119)
T ss_pred HHHHCCCEEEEEeCCc-------hHHHHHHHcCCcEEECCCCCCCceeHHHHHHHHH
Confidence 3344457888888764 2667899999999999875 5777777776643
No 87
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=24.23 E-value=1.1e+02 Score=28.22 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=27.1
Q ss_pred cceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEc
Q psy6066 279 KASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVD 313 (370)
Q Consensus 279 kA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~ 313 (370)
...+||.+ .|+.+...++-.+|+++++|++...
T Consensus 113 ~~dvVi~~--~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 113 KFTLVIAT--EENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred CCCEEEEC--CCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 46777766 4468899999999999999998863
No 88
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=24.18 E-value=1.2e+02 Score=24.41 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=30.7
Q ss_pred HHHHHHhcCcceEEEEeccCCchhH---HHhHHHHhhhcCCcEE
Q psy6066 270 TVTRLVVKKKASLVIIAHDVDPIEL---VLFLPALCRKMGIPYC 310 (370)
Q Consensus 270 eVtklIekkkA~LVVIA~DVdPiEl---V~~LPaLCek~~VPY~ 310 (370)
++..+|++++..|||-.-+-..-.. -..|--+|.+.|||+.
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 5999999999999988765444333 3457789999999985
No 89
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=23.80 E-value=1.3e+02 Score=25.59 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=29.2
Q ss_pred CcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc
Q psy6066 278 KKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS 314 (370)
Q Consensus 278 kkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S 314 (370)
....+||.+.|- .+...+|-.+|++.|+||+.+..
T Consensus 88 ~~~diVi~~~d~--~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 88 DGVDLVIDAIDN--IAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred cCCCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 467889888876 67788889999999999998754
No 90
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=23.60 E-value=3.4e+02 Score=25.44 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=26.1
Q ss_pred ceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc-cH
Q psy6066 280 ASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS-DK 317 (370)
Q Consensus 280 A~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se-Dk 317 (370)
.-++|+..|-.+.+....+=.+|..+|+|+++|=++ |+
T Consensus 112 ~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 112 YAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred EEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 345556555556666666667889999999887544 54
No 91
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.54 E-value=95 Score=30.34 Aligned_cols=43 Identities=30% Similarity=0.661 Sum_probs=26.7
Q ss_pred HHhhhcCCcEE---EEccccHHHHHHHHHHH-------hhhhhhhHHHHhhhh
Q psy6066 300 ALCRKMGIPYC---IVDSSDKANLAKLIESV-------KVNFTDRYDEIRRQW 342 (370)
Q Consensus 300 aLCek~~VPY~---iV~SeDkg~lakLve~i-------r~nynD~ydEi~~~w 342 (370)
.+|.+.|+||- .||.+....+..=++.| +.+|-.+||.....|
T Consensus 63 r~~~~~G~rFlgG~aVP~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w 115 (257)
T PF11348_consen 63 RLCLKVGVRFLGGYAVPEDKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEW 115 (257)
T ss_pred HHHHHcCCcccceeEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999982 35554444433333333 455667788887777
No 92
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.47 E-value=1.5e+02 Score=29.48 Aligned_cols=62 Identities=24% Similarity=0.365 Sum_probs=45.5
Q ss_pred HHHHHHHHhhccCCCCCcccc---chhcchhhHHHHHHHhhhcCcchHHHHHHHHHHHHHHHhhccCCCCCCCCcccccc
Q psy6066 120 IQRQKAVLQKRLKVPPPVHQF---TQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQG 196 (370)
Q Consensus 120 IQrQraiL~~~lKipp~i~qf---~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a~a~~ka~~k~~~~~kkp~~i~~G 196 (370)
=||||--+..++=.-|.+-=+ +..||-..-.+++++|.+
T Consensus 145 GQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~-------------------------------------- 186 (252)
T COG1124 145 GQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE-------------------------------------- 186 (252)
T ss_pred hHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHH--------------------------------------
Confidence 389999999999988876433 566777777778888742
Q ss_pred chhhhHHhhcccceEEEEecCCChHHHHH
Q psy6066 197 TNTVTRLVVKKKASLVIIAHDVDPIELFK 225 (370)
Q Consensus 197 in~Vt~lIE~kka~LVvIA~dVdPielv~ 225 (370)
+-++....+++|+||..-++.+.
T Consensus 187 ------l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 187 ------LKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred ------HHHhcCceEEEEeCcHHHHHHHh
Confidence 23455678999999987665543
No 93
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.46 E-value=3.6e+02 Score=20.63 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=39.3
Q ss_pred cccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhc-CCcEEEEccc
Q psy6066 264 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKM-GIPYCIVDSS 315 (370)
Q Consensus 264 Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~-~VPY~iV~Se 315 (370)
.....+++...+++....++++-.+....+..-++-.|.... ++|.+++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 28 TASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp EESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred EECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 344568888889999999999997776666666666666654 8999888754
No 94
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.42 E-value=1.4e+02 Score=30.44 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=26.1
Q ss_pred HHHHHHHhhccCCCCCc---cccchhcchhhHHHHHHHhh
Q psy6066 121 QRQKAVLQKRLKVPPPV---HQFTQAVDKQTASQLFKFLE 157 (370)
Q Consensus 121 QrQraiL~~~lKipp~i---~qf~~~l~~~~~~~l~~l~~ 157 (370)
+|||...+.++-.-|.+ .-=|+.||-.+-.|++++|.
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~ 197 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLK 197 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHH
Confidence 57888888887776654 22367777777777877764
No 95
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=21.99 E-value=1.8e+02 Score=29.71 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=43.2
Q ss_pred ccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc
Q psy6066 265 KQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS 314 (370)
Q Consensus 265 k~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S 314 (370)
..+++++...+++..+.-|+||..-...+-+..+=..|+++|+...++|+
T Consensus 177 lg~~~dl~~~i~~~~vd~ViIA~p~~~~~~~~~ll~~~~~~gv~V~vvP~ 226 (451)
T TIGR03023 177 LGKLDDLEELIREGEVDEVYIALPLAAEDRILELLDALEDLTVDVRLVPD 226 (451)
T ss_pred cCCHHHHHHHHHhcCCCEEEEeeCcccHHHHHHHHHHHHhcCCEEEEeCc
Confidence 34578899999999999999998877777777888889999999999975
No 96
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=21.73 E-value=4.6e+02 Score=23.49 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=32.0
Q ss_pred eEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc-cHHH------------HHHHHHHHhhhhhhhHH
Q psy6066 281 SLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS-DKAN------------LAKLIESVKVNFTDRYD 336 (370)
Q Consensus 281 ~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se-Dkg~------------lakLve~ir~nynD~yd 336 (370)
.++++-.|-++.+.-..+-..+++++.|+++|-++ |+-. .+.+++.+++.+.+.+.
T Consensus 82 d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 150 (197)
T cd04104 82 DFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ 150 (197)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 34444344444555444555666779999999554 5521 23566666666555443
No 97
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=21.70 E-value=98 Score=26.20 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=31.1
Q ss_pred cccccc-chhhhHHhhcccceEEEEecCCChHHHHHHhhh
Q psy6066 191 NQIKQG-TNTVTRLVVKKKASLVIIAHDVDPIELFKFLEK 229 (370)
Q Consensus 191 ~~i~~G-in~Vt~lIE~kka~LVvIA~dVdPielv~~Lpk 229 (370)
+++-.| +.++..+++...+++||+-++.+|.+.-.+-..
T Consensus 39 ~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~ 78 (95)
T PF13167_consen 39 TYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKA 78 (95)
T ss_pred eeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHH
Confidence 344444 678999999999999999999999887765443
No 98
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=21.66 E-value=1.2e+02 Score=33.22 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=30.1
Q ss_pred HHHHHHHhhccCCCCCcccc---chhcchhhHHHHHHHhhh
Q psy6066 121 QRQKAVLQKRLKVPPPVHQF---TQAVDKQTASQLFKFLEK 158 (370)
Q Consensus 121 QrQraiL~~~lKipp~i~qf---~~~l~~~~~~~l~~l~~K 158 (370)
||||.-++.+|-..|.+-=+ +..||..+..++++++.+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 88998888888888876433 577888888888888864
No 99
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family. All members of this protein family are predicted lipoproteins with a conserved Cys near the N-terminus for cleavage and modification, and are part of known or predicted type III secretion systems. Members are found in both plant and animal pathogens, including the obligately intracellular chlamydial species and (non-pathogenic) root nodule bacteria. The most closely related proteins outside this family are examples of the flagellar M-ring protein FliF.
Probab=21.15 E-value=3.7e+02 Score=25.13 Aligned_cols=82 Identities=21% Similarity=0.187 Sum_probs=48.6
Q ss_pred EEEeccCCchhHHHhHHHHhhhcCCcEEE-----------EccccHHHHHHHHHH---HhhhhhhhHHHHhhhhCCCCCC
Q psy6066 283 VIIAHDVDPIELVLFLPALCRKMGIPYCI-----------VDSSDKANLAKLIES---VKVNFTDRYDEIRRQWGGGSLG 348 (370)
Q Consensus 283 VVIA~DVdPiElV~~LPaLCek~~VPY~i-----------V~SeDkg~lakLve~---ir~nynD~ydEi~~~wGG~ilg 348 (370)
.++-++.++-|--- +=+.-.++||||-. |+++|...+-.++.. .+..+ ..|+|+ +.+.-||
T Consensus 20 ~~Ly~~L~~~da~~-I~~~L~~~gI~y~~~~~~~~g~~I~Vp~~~~~~ar~~La~~glp~~~~-~~~~el---f~~~~lg 94 (193)
T TIGR02544 20 DLLYSGLSEREANE-MLAVLMRHGIDAEKEGSGKGGYTISVEESDFARAVELLRQYGLPRQRF-VNLGEL---FPKDGLV 94 (193)
T ss_pred eecccCCCHHHHHH-HHHHHHHCCCCeEEeecCCCCeEEEEcHHHHHHHHHHHHHcCCCCCCC-CCHHHH---ccCCCCc
Confidence 33455666666433 33444568999954 455555543333322 11222 124443 3445599
Q ss_pred cchHHHHHHHHHHHHhHHhhc
Q psy6066 349 SKSAARIAKLERAKAKELAQK 369 (370)
Q Consensus 349 ~ks~~~~~~~~~~~~~~~~~~ 369 (370)
.-+..+-.+..+|...||++-
T Consensus 95 ~T~~~e~~~~~~ale~EL~rt 115 (193)
T TIGR02544 95 SSPQEERARYLYAIEQRLEQT 115 (193)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999863
No 100
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=21.08 E-value=1.4e+02 Score=29.96 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhccCCCCCcc---ccchhcchhhHHHHHHHhh
Q psy6066 119 RIQRQKAVLQKRLKVPPPVH---QFTQAVDKQTASQLFKFLE 157 (370)
Q Consensus 119 rIQrQraiL~~~lKipp~i~---qf~~~l~~~~~~~l~~l~~ 157 (370)
-=|+||..+..++=-.|.+= .-+..||.++...+++++.
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~ 184 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK 184 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 34889999988888887763 3357788888888888875
No 101
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=20.72 E-value=4.6e+02 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=18.0
Q ss_pred hHHHHhhhcCCcEEEEccccHHHHHHHHH
Q psy6066 297 FLPALCRKMGIPYCIVDSSDKANLAKLIE 325 (370)
Q Consensus 297 ~LPaLCek~~VPY~iV~SeDkg~lakLve 325 (370)
.+..+|+..++||+.+++.+...+..+.+
T Consensus 127 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 127 QGQDLAKSYGIPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred HHHHHHHHhCCeEEEecCCCCCCHHHHHH
Confidence 45567888888888876654333344433
No 102
>PF13611 Peptidase_S76: Serine peptidase of plant viral polyprotein, P1
Probab=20.59 E-value=1.3e+02 Score=26.86 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=33.2
Q ss_pred cchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc
Q psy6066 266 QGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 266 ~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se 315 (370)
.++..+....+.+.-++ +|. ++=-||+.-+--+|.+.|+|..||.++
T Consensus 13 ~~I~~~~~~~~~~~~~v--v~~-~~i~dL~~~~~~ic~ergiPIe~I~~~ 59 (121)
T PF13611_consen 13 FNIKKTALVKRRKEKQV--VAN-NEIDDLVREVTEICCERGIPIEIIDKK 59 (121)
T ss_pred cCcEEhhhhhhhhhcce--Eec-CcHHHHHHHHHHHHHHcCCCEEEecCc
Confidence 34444444444455555 554 666789999999999999999999543
No 103
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=20.32 E-value=7.9e+02 Score=26.75 Aligned_cols=117 Identities=12% Similarity=0.098 Sum_probs=66.8
Q ss_pred CCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcC-cCcHHHHHHHHHHHHHHHHcCCCCCCCCCCccccc
Q psy6066 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYR-PESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQ 266 (370)
Q Consensus 188 kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~-pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~ 266 (370)
.+-..+..|-.++..++.+++-=+++.+|.-+=.-+..++..+. |.+.--+..+. .+.+ .|-.-++.+.+. =..
T Consensus 459 ~~~~~~~~~~~~l~~a~~~~kgvi~~t~H~gnwE~~~~~~~~~~~~~~~i~r~~~~---~R~~-~g~~~i~~~~~~-~~~ 533 (656)
T PRK15174 459 YRLADISHVEQFFQRLQLDQRGCIIVSAHLGAMYAGPMILSLLEMNSKWVASTPGV---LKGG-YGERLISVSDKS-EAD 533 (656)
T ss_pred HHHhhhhhHHHHHHHHHhcCCCEEEEecCcchhhHHHHHHHHcCCCceeeecchHH---HHHh-cCCceeccCCCC-cch
Confidence 33344556777788888888887777788555433344444442 33321122221 2221 222111111000 035
Q ss_pred chhHHHHHHhcCcceEEEEeccCCc-hhHHHh-------------HHHHhhhcCCcEEEE
Q psy6066 267 GTNTVTRLVVKKKASLVIIAHDVDP-IELVLF-------------LPALCRKMGIPYCIV 312 (370)
Q Consensus 267 GineVtklIekkkA~LVVIA~DVdP-iElV~~-------------LPaLCek~~VPY~iV 312 (370)
|+.++.+.+.+| ++|+|..|-+| -+ -+| ...|..+.|+|.+++
T Consensus 534 ~~r~i~~aLk~g--~~v~il~Dq~~~~~-~~~v~FfG~~a~~~~g~~~lA~~~~~pvv~~ 590 (656)
T PRK15174 534 VVRACMQTLHSG--QSLVVAIDGALNLS-APTIDFFGQQITYSTFCSRLAWKMHLPTVFS 590 (656)
T ss_pred HHHHHHHHHHcC--CeEEEEeCCCCCCC-CceeccCCCccCcCcHHHHHHHHHCCCEEEe
Confidence 788999999988 68999988885 12 222 237888999998876
No 104
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=20.18 E-value=2e+02 Score=27.45 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHHhcCcceEEEEeccC-----CchhHHHhHHHHhhhcCCcEEEEccc-cH
Q psy6066 271 VTRLVVKKKASLVIIAHDV-----DPIELVLFLPALCRKMGIPYCIVDSS-DK 317 (370)
Q Consensus 271 VtklIekkkA~LVVIA~DV-----dPiElV~~LPaLCek~~VPY~iV~Se-Dk 317 (370)
+...++...+.+||+++|+ +|-++..++-.|. ..++|+..|+-. |-
T Consensus 23 l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~-~l~~pv~~V~GNhD~ 74 (224)
T cd07388 23 LVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILG-EAHLPTFYVPGPQDA 74 (224)
T ss_pred HHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHH-hcCCceEEEcCCCCh
Confidence 3334455678899999999 4555666666664 557899999653 54
No 105
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=20.03 E-value=1.3e+02 Score=27.69 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=27.0
Q ss_pred cceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEc
Q psy6066 279 KASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVD 313 (370)
Q Consensus 279 kA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~ 313 (370)
...+||.+.| +.+...+|-.+|+++|+|++...
T Consensus 110 ~~dvVi~~~~--~~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 110 QFDVVVATEL--SRAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred CCCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEE
Confidence 4678877754 68888999999999999997763
No 106
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=20.00 E-value=1.6e+02 Score=24.73 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=22.8
Q ss_pred hHHHhHHHHhhhcCCcEEEEccccHHHHHHHHHH
Q psy6066 293 ELVLFLPALCRKMGIPYCIVDSSDKANLAKLIES 326 (370)
Q Consensus 293 ElV~~LPaLCek~~VPY~iV~SeDkg~lakLve~ 326 (370)
+--.+.-.+|+..|||++.++..+.-....|.+.
T Consensus 88 ~rD~~k~~~l~~agiplir~~~~~~~~~~~l~~~ 121 (126)
T PF10881_consen 88 ERDEFKDRVLKKAGIPLIRISPKDSYSVEELRRD 121 (126)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHH
Confidence 3445778899999999999976543333333333
Done!