Query psy6066
Match_columns 370
No_of_seqs 237 out of 638
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 16:46:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_H 60S ribosomal protein L 100.0 8.6E-94 3E-98 675.4 4.8 229 17-370 6-257 (258)
2 4a17_F RPL7A, 60S ribosomal pr 100.0 3.1E-87 1.1E-91 631.4 18.8 216 32-370 15-253 (255)
3 3izc_H 60S ribosomal protein R 100.0 2E-88 6.9E-93 640.3 4.4 229 15-364 3-255 (256)
4 2zkr_f 60S ribosomal protein L 100.0 4.2E-86 1.4E-90 627.7 7.2 242 7-370 1-265 (266)
5 3iz5_H 60S ribosomal protein L 99.9 8.8E-25 3E-29 206.5 7.4 96 171-292 107-202 (258)
6 3jyw_G 60S ribosomal protein L 99.9 5.3E-25 1.8E-29 186.1 -3.2 83 240-322 1-85 (113)
7 4a17_F RPL7A, 60S ribosomal pr 99.8 6.2E-22 2.1E-26 187.2 7.4 97 171-293 104-200 (255)
8 3izc_H 60S ribosomal protein R 99.8 3.3E-20 1.1E-24 175.7 7.7 98 171-293 109-207 (256)
9 2lbw_A H/ACA ribonucleoprotein 99.7 1.5E-18 5E-23 146.6 7.3 81 261-341 18-117 (121)
10 2zkr_f 60S ribosomal protein L 99.7 3.8E-18 1.3E-22 162.5 5.5 113 171-309 114-226 (266)
11 2ale_A SNU13, NHP2/L7AE family 99.6 2.5E-16 8.6E-21 135.9 6.8 80 262-341 31-131 (134)
12 3jyw_G 60S ribosomal protein L 99.5 8.5E-16 2.9E-20 129.8 -0.7 111 169-327 1-112 (113)
13 2jnb_A NHP2-like protein 1; sp 99.5 2E-14 6.8E-19 125.8 3.4 79 262-340 49-137 (144)
14 3v7e_A Ribosome-associated pro 99.4 8.9E-14 3.1E-18 110.2 6.2 58 263-321 11-69 (82)
15 1xbi_A 50S ribosomal protein L 99.4 7.5E-14 2.5E-18 117.7 5.4 78 231-323 12-90 (120)
16 2xzm_U Ribosomal protein L7AE 99.4 1.5E-13 5.1E-18 117.5 7.0 64 260-323 21-85 (126)
17 1rlg_A 50S ribosomal protein L 99.4 2.5E-13 8.7E-18 113.8 6.2 79 232-322 8-87 (119)
18 1vq8_F 50S ribosomal protein L 99.4 3.7E-13 1.3E-17 113.0 6.8 61 262-322 28-89 (120)
19 2fc3_A 50S ribosomal protein L 99.4 5.5E-13 1.9E-17 112.6 6.3 79 232-322 9-88 (124)
20 3o85_A Ribosomal protein L7AE; 99.4 1.1E-12 3.8E-17 111.2 7.4 80 262-341 30-117 (122)
21 2aif_A Ribosomal protein L7A; 99.3 2.3E-12 7.8E-17 110.8 6.4 80 262-341 40-129 (135)
22 3cpq_A 50S ribosomal protein L 99.1 3.8E-11 1.3E-15 99.5 5.6 60 262-322 20-81 (110)
23 2kg4_A Growth arrest and DNA-d 99.1 5.3E-11 1.8E-15 106.7 6.4 62 262-323 34-104 (165)
24 3u5c_M 40S ribosomal protein S 99.1 1.5E-11 5.3E-16 107.8 2.5 63 262-324 39-104 (143)
25 1w41_A 50S ribosomal protein L 99.1 6.8E-11 2.3E-15 96.2 5.9 60 262-322 15-76 (101)
26 3on1_A BH2414 protein; structu 99.0 3.1E-10 1E-14 92.5 5.6 58 263-321 18-76 (101)
27 3v7q_A Probable ribosomal prot 99.0 4E-10 1.4E-14 92.1 5.7 57 263-320 19-76 (101)
28 3j21_Z 50S ribosomal protein L 98.9 1.4E-09 4.9E-14 88.2 5.2 59 263-322 15-75 (99)
29 4a18_G RPL30; ribosome, eukary 98.8 3.9E-09 1.3E-13 86.6 4.3 59 263-322 22-82 (104)
30 3iz5_f 60S ribosomal protein L 98.7 1.5E-08 5E-13 85.0 5.7 60 262-322 25-86 (112)
31 3u5e_c L32, RP73, YL38, 60S ri 98.7 1.8E-08 6.3E-13 82.8 4.8 60 262-322 21-82 (105)
32 2xzm_U Ribosomal protein L7AE 98.3 5.2E-07 1.8E-11 77.0 5.4 61 193-277 25-85 (126)
33 2lbw_A H/ACA ribonucleoprotein 98.1 8.3E-06 2.8E-10 68.6 8.0 73 190-286 18-91 (121)
34 1xbi_A 50S ribosomal protein L 98.0 4.1E-06 1.4E-10 70.4 5.0 68 192-283 29-97 (120)
35 2ale_A SNU13, NHP2/L7AE family 97.9 8.3E-06 2.8E-10 70.3 5.4 65 192-280 32-96 (134)
36 3vi6_A 60S ribosomal protein L 97.9 6.4E-06 2.2E-10 70.1 4.6 59 263-322 27-87 (125)
37 3v7e_A Ribosome-associated pro 97.9 9.3E-06 3.2E-10 64.1 5.1 62 192-278 11-72 (82)
38 1rlg_A 50S ribosomal protein L 97.9 3.5E-05 1.2E-09 64.3 7.6 68 192-283 27-95 (119)
39 1vq8_F 50S ribosomal protein L 97.8 6.3E-05 2.2E-09 62.9 8.6 70 192-285 29-99 (120)
40 2fc3_A 50S ribosomal protein L 97.8 9.2E-05 3.2E-09 62.3 8.6 63 192-278 28-90 (124)
41 2jnb_A NHP2-like protein 1; sp 97.7 2.9E-05 9.9E-10 67.9 4.7 64 192-279 50-113 (144)
42 3cg6_A Growth arrest and DNA-d 97.5 0.00012 4E-09 64.7 5.6 61 262-322 24-93 (146)
43 3o85_A Ribosomal protein L7AE; 97.5 8.3E-05 2.9E-09 62.8 4.2 63 192-278 31-93 (122)
44 2aif_A Ribosomal protein L7A; 97.3 0.00059 2E-08 58.5 7.2 64 192-279 41-104 (135)
45 3cpq_A 50S ribosomal protein L 97.2 0.00058 2E-08 56.3 6.4 62 192-278 21-83 (110)
46 3ffm_A Growth arrest and DNA-d 97.2 0.00036 1.2E-08 62.8 5.5 61 262-322 45-114 (167)
47 1w41_A 50S ribosomal protein L 97.1 0.00061 2.1E-08 55.1 5.7 62 192-278 16-78 (101)
48 3v7q_A Probable ribosomal prot 96.9 0.0019 6.6E-08 52.4 6.5 63 193-280 20-82 (101)
49 3on1_A BH2414 protein; structu 96.7 0.0026 9E-08 51.4 5.8 64 193-281 19-82 (101)
50 3j21_Z 50S ribosomal protein L 96.1 0.0059 2E-07 49.2 4.8 69 192-285 15-85 (99)
51 2kg4_A Growth arrest and DNA-d 95.3 0.094 3.2E-06 47.0 9.6 66 192-276 35-103 (165)
52 4a18_G RPL30; ribosome, eukary 94.8 0.041 1.4E-06 44.7 5.5 63 192-279 22-85 (104)
53 3u5c_M 40S ribosomal protein S 94.5 0.014 4.7E-07 51.2 2.0 62 193-276 41-102 (143)
54 3iz5_f 60S ribosomal protein L 94.2 0.08 2.7E-06 44.1 6.1 38 192-230 26-63 (112)
55 3vi6_A 60S ribosomal protein L 93.0 0.06 2E-06 45.6 3.2 38 192-230 27-64 (125)
56 3u5e_c L32, RP73, YL38, 60S ri 91.8 0.14 4.6E-06 41.8 3.9 62 192-278 22-84 (105)
57 1b93_A Protein (methylglyoxal 82.7 7.7 0.00026 34.0 9.5 106 210-326 13-129 (152)
58 2xw6_A MGS, methylglyoxal synt 80.8 7.4 0.00025 33.4 8.5 107 210-327 5-122 (134)
59 1vmd_A MGS, methylglyoxal synt 77.2 11 0.00038 34.0 8.9 106 210-326 29-145 (178)
60 3ir9_A Peptide chain release f 56.3 23 0.00077 31.0 6.3 29 262-290 45-73 (166)
61 2ohw_A YUEI protein; structura 44.6 45 0.0015 28.5 6.2 45 269-314 53-97 (133)
62 3bc1_A RAS-related protein RAB 43.7 1.1E+02 0.0037 24.3 8.1 33 298-330 150-182 (195)
63 3nkl_A UDP-D-quinovosamine 4-d 39.4 37 0.0013 26.9 4.6 49 266-314 52-100 (141)
64 1x52_A Pelota homolog, CGI-17; 39.3 43 0.0015 27.9 5.1 53 262-315 37-96 (124)
65 3ilx_A First ORF in transposon 38.0 1.4E+02 0.0048 24.8 8.2 46 266-315 50-100 (143)
66 2qi2_A Pelota, cell division p 37.3 28 0.00097 33.7 4.3 52 263-315 265-317 (347)
67 2yvq_A Carbamoyl-phosphate syn 36.0 41 0.0014 28.2 4.6 43 269-311 86-130 (143)
68 4dsu_A GTPase KRAS, isoform 2B 31.9 1.9E+02 0.0064 22.8 8.3 33 296-328 129-161 (189)
69 3agk_A Peptide chain release f 31.0 65 0.0022 31.0 5.6 51 262-315 298-348 (373)
70 3con_A GTPase NRAS; structural 29.2 2.2E+02 0.0075 22.8 7.8 31 297-327 147-177 (190)
71 3l4n_A Monothiol glutaredoxin- 28.6 86 0.003 25.7 5.3 67 282-351 44-112 (127)
72 3j15_A Protein pelota; ribosom 27.0 56 0.0019 31.6 4.4 54 262-315 279-335 (357)
73 2yc2_C IFT27, small RAB-relate 27.0 2.5E+02 0.0084 22.6 9.1 28 298-325 156-184 (208)
74 2f7s_A C25KG, RAS-related prot 26.7 1.7E+02 0.0057 24.2 6.8 30 298-327 164-193 (217)
75 1gz0_A Hypothetical tRNA/RRNA 25.7 76 0.0026 29.1 4.8 59 262-321 12-72 (253)
76 3e20_C Eukaryotic peptide chai 25.5 2.8E+02 0.0095 27.7 9.2 28 263-290 305-332 (441)
77 3kkq_A RAS-related protein M-R 25.1 2.5E+02 0.0087 22.1 7.5 29 298-326 146-175 (183)
78 1z06_A RAS-related protein RAB 24.6 2.1E+02 0.0072 23.0 6.9 20 298-317 150-169 (189)
79 1uf3_A Hypothetical protein TT 24.3 89 0.003 25.9 4.7 41 273-314 26-71 (228)
80 2gf9_A RAS-related protein RAB 23.9 2.5E+02 0.0085 22.6 7.2 31 297-327 149-179 (189)
81 2a9k_A RAS-related protein RAL 23.4 2.7E+02 0.0092 21.8 7.4 30 298-327 146-175 (187)
82 3obw_A Protein pelota homolog; 23.2 2.6E+02 0.0089 27.2 8.3 54 262-315 284-342 (364)
83 2bov_A RAla, RAS-related prote 23.2 2.9E+02 0.01 22.2 8.7 29 298-326 142-170 (206)
84 2g6b_A RAS-related protein RAB 22.4 2.7E+02 0.0091 21.8 7.0 31 298-328 139-169 (180)
85 2fu5_C RAS-related protein RAB 22.0 2.9E+02 0.01 21.7 7.5 30 298-327 136-165 (183)
86 3oby_A Protein pelota homolog; 20.5 71 0.0024 31.1 3.7 53 263-315 265-321 (352)
87 2fn4_A P23, RAS-related protei 20.1 3E+02 0.01 21.4 6.8 30 298-327 137-166 (181)
88 3bvp_A INT, TP901-1 integrase; 20.0 2.4E+02 0.0081 22.7 6.3 69 265-333 57-131 (138)
No 1
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=100.00 E-value=8.6e-94 Score=675.35 Aligned_cols=229 Identities=55% Similarity=0.940 Sum_probs=161.4
Q ss_pred CccCCCccchhhhhhhcccCccccccccccccCccCCCccccccccccchhhhhhhhHHHHhhhhcCCCCCccccccccc
Q psy6066 17 KKVAPAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDK 96 (370)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~g~~i~~k~dl~rfvkwP~yir~Qrqk~il~krlKvP~~i~qf~~~ld~ 96 (370)
++++|+| ..++. ++++|||||+||+||||||||||+|||||||+||+||||||||+|||+||||||+||||||+||+
T Consensus 6 ~~~~~~~-~~~~~--~k~~nplfekrpknfgigqdiqpkrdltrfvkwP~yirlqrqr~il~~rlKvppainqF~~~ld~ 82 (258)
T 3iz5_H 6 GGRAPVP-AKKKT--EKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDK 82 (258)
T ss_dssp -------------------------------------------------------CCSCCCCHHHHSCCSCSHHHHHHHH
T ss_pred CCCCCCc-ccccc--ccccCcccccCCCccccCccCCCCcccceeeeccceeeHHHHHHHHHhcccCCCcccccCCcCch
Confidence 3467777 32333 58899999999999999999999999999999999999999999999999887777777777666
Q ss_pred cccccccccccccccccchhHHHHHHHHHHHhhccCCCCCccccchhcchhhHHHHHHHhhhcCcchHHHHHHHHHHHHH
Q psy6066 97 QTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAE 176 (370)
Q Consensus 97 ~~~~~~~~k~dl~rfv~wPkYirIQrQraiL~~~lKipp~i~qf~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a~a~ 176 (370)
|++ +|||+|++|||||+++||
T Consensus 83 ~ta--------------------------------------------------tql~kl~~KYrPEtk~ek--------- 103 (258)
T 3iz5_H 83 NLA--------------------------------------------------TNLFKMLLKYRPEDKAAK--------- 103 (258)
T ss_dssp HHC--------------------------------------------------CCCCCCCCCCCCTHHHHH---------
T ss_pred hHH--------------------------------------------------HHHHHHHHhcCCCChHHH---------
Confidence 665 455678999999999888
Q ss_pred HHhhccCCCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCC
Q psy6066 177 KKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDT 256 (370)
Q Consensus 177 ~ka~~k~~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~ 256 (370)
++||+++||++|+|+ ++
T Consensus 104 --------------------------------------------------------------k~rL~~~a~~ka~gk-~~ 120 (258)
T 3iz5_H 104 --------------------------------------------------------------KERLLKRAQAEAEGK-TV 120 (258)
T ss_dssp --------------------------------------------------------------HHHHHHHHHTTCCCC-SS
T ss_pred --------------------------------------------------------------HHHHHHHHHHHhcCC-CC
Confidence 566666777778886 56
Q ss_pred CCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE-----------------------c
Q psy6066 257 PTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-----------------------D 313 (370)
Q Consensus 257 ~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-----------------------~ 313 (370)
|+++|.+|++|+||||++||+|+|+||||||||||||+++|||+||++|||||||| +
T Consensus 121 ~~krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~gVPY~iVk~KarLG~~vgrKtct~Va~t~v~ 200 (258)
T 3iz5_H 121 EAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVK 200 (258)
T ss_dssp SSCCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTTCCEEEESCHHHHHHHTTCSSCCSEEEEESC
T ss_pred CCCCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcCCCeEEECCHHHHHHHhCCccceEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999 5
Q ss_pred cccHHHHHHHHHHHhhhhhhhHHHHhhhhCCCCCCcchHHHHHHHHHHHHhHHhhcC
Q psy6066 314 SSDKANLAKLIESVKVNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAKAKELAQKV 370 (370)
Q Consensus 314 SeDkg~lakLve~ir~nynD~ydEi~~~wGG~ilg~ks~~~~~~~~~~~~~~~~~~~ 370 (370)
+||+++|++|||+|++||||+||||+||||||+||+||+++|+++|+|+|+|+|+|+
T Consensus 201 ~eDk~aLakLveairtnynd~y~ei~~~wGG~vlg~ks~a~~ak~eka~ake~a~k~ 257 (258)
T 3iz5_H 201 NEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRM 257 (258)
T ss_dssp CSCCHHHHHHHHHHTTTSCCCCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhHhhhhhHHHhhccCCCccCHHHHHHHHHHHHHHhHHHHhhc
Confidence 689999999999999999999999999999999999999999999999999999985
No 2
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=100.00 E-value=3.1e-87 Score=631.40 Aligned_cols=216 Identities=53% Similarity=0.888 Sum_probs=192.9
Q ss_pred hcccCccccccccccccCccCCCccccccccccchhhhhhhhHHHHhhhhcCCCCCcccccccccccccccccccccccc
Q psy6066 32 KKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRF 111 (370)
Q Consensus 32 ~~~~~~l~~~~~~~f~~g~~i~~k~dl~rfvkwP~yir~Qrqk~il~krlKvP~~i~qf~~~ld~~~~~~~~~k~dl~rf 111 (370)
.+++|||||+||+||||||||||+|||||||+||+||||||||+|||+||||||+||||
T Consensus 15 ~k~~nplfekrpknfgig~diqpkrdlt~fvkwp~yirlqrq~~il~~rlkvpp~inqf--------------------- 73 (255)
T 4a17_F 15 EKKKNPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQF--------------------- 73 (255)
T ss_dssp ----CCTTCCCCCCCSSSSSCCCCCCCGGGCBCCHHHHHHHHHHHHHHHSBCCHHHHGG---------------------
T ss_pred ccccCcccccCCCcCCcCCCCCCccccccceeccceeeHHHHHHHHHhcccCCCccccc---------------------
Confidence 37899999999999999999999999999999999999999999999999665555555
Q ss_pred ccchhHHHHHHHHHHHhhccCCCCCccccchhcchhhHHHHHHHhhhcCcchHHHHHHHHHHHHHHHhhccCCCCCCCCc
Q psy6066 112 VKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPN 191 (370)
Q Consensus 112 v~wPkYirIQrQraiL~~~lKipp~i~qf~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a~a~~ka~~k~~~~~kkp~ 191 (370)
+++||.||++|||+|++|||||+++||
T Consensus 74 -----------------------------~~~ld~~~a~ql~kl~~kyrpetk~ek------------------------ 100 (255)
T 4a17_F 74 -----------------------------TKTLDKNQSSNLFKLLASYAPEKPAEK------------------------ 100 (255)
T ss_dssp -----------------------------GCCCCHHHHHHHHHHHHHTCCCCHHHH------------------------
T ss_pred -----------------------------CCCCChhhHHHHHHHHHhcCccchHHH------------------------
Confidence 555666778999999999999999888
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
++||+++||++|+|+ ++|+++|.+|++|+|+|
T Consensus 101 -----------------------------------------------k~rl~~~a~~ka~gk-~~~~k~p~~lk~GvneV 132 (255)
T 4a17_F 101 -----------------------------------------------KQRLVAQAEAKKDGK-QVETKKPIVLKYGLNHI 132 (255)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHTTC-CCCCCCCCCEEECHHHH
T ss_pred -----------------------------------------------HHHHHHHHHHHhcCC-CCCCCCCceeecchHHH
Confidence 666677778888888 45899999999999999
Q ss_pred HHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE-----------------------ccccHHHHHHHHHHHh
Q psy6066 272 TRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-----------------------DSSDKANLAKLIESVK 328 (370)
Q Consensus 272 tklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-----------------------~SeDkg~lakLve~ir 328 (370)
|++||+|+|+||||||||||+|+++|||+||++|||||||| ++||+++|++|+|.|+
T Consensus 133 tKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~~LG~avGrKt~s~Vaitdv~~EDk~al~kLve~ik 212 (255)
T 4a17_F 133 TTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALGKLVNKKTATAVALTEVRNEDKAKLQQFSELFK 212 (255)
T ss_dssp HHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHHHHHHHHTSSCCSEEEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCcceEEEeeccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 4568899999999999
Q ss_pred hhhhhhHHHHhhhhCCCCCCcchHHHHHHHHHHHHhHHhhcC
Q psy6066 329 VNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAKAKELAQKV 370 (370)
Q Consensus 329 ~nynD~ydEi~~~wGG~ilg~ks~~~~~~~~~~~~~~~~~~~ 370 (370)
+||||+ |||++|||||+||+||+++|+++|+|+|+|+|+|+
T Consensus 213 tnynd~-~e~~~~wgG~~lg~ks~a~~~k~eka~ake~a~k~ 253 (255)
T 4a17_F 213 TNYNAN-DELRKTWGGGILGQKSQHKVEALAKAVQEEQIKKA 253 (255)
T ss_dssp HHTTTC-CHHHHCCCBCCCCHHHHHHHHHHHHHHHHHC----
T ss_pred hhcccc-chhhhccCCCccChhHHHHHHHHHHHHhHHHHHhc
Confidence 999999 99999999999999999999999999999999985
No 3
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=100.00 E-value=2e-88 Score=640.30 Aligned_cols=229 Identities=50% Similarity=0.897 Sum_probs=155.9
Q ss_pred CCCccCCCccchhhhhhhcccCccccccccccccCccCCCccccccccccchhhhhhhhHHHHhhhhcCCCCCccccccc
Q psy6066 15 KSKKVAPAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAV 94 (370)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~g~~i~~k~dl~rfvkwP~yir~Qrqk~il~krlKvP~~i~qf~~~l 94 (370)
++|++||+|.+++++|+++++|||||+|||||||||||||+|||||||+||+||||||||+|||+||||||+||||||+|
T Consensus 3 ~~kk~~~~p~~~kk~~~kk~~nplfekrpknfgig~diqpkrdl~~fvkwp~yi~lqrq~~il~~rlkvpp~inqf~~~l 82 (256)
T 3izc_H 3 PGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQFQYTL 82 (256)
T ss_dssp ---------------------------------------------------------CCSSCCCTTTTCCCSCSHHHHHH
T ss_pred CCCCCCCCCcchhhhccccccCcccccCCcccccCCCCCCcccchhheeccceeeHHHHHHHHHhcccCCCchhhcCCcC
Confidence 46689999999999999999999999999999999999999999999999999999999999999998877777777776
Q ss_pred cccccccccccccccccccchhHHHHHHHHHHHhhccCCCCCccccchhcchhhHHHHHHHhhhcCcchHHHHHHHHHHH
Q psy6066 95 DKQTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKAR 174 (370)
Q Consensus 95 d~~~~~~~~~k~dl~rfv~wPkYirIQrQraiL~~~lKipp~i~qf~~~l~~~~~~~l~~l~~KyrPE~k~ekk~RL~a~ 174 (370)
|+|++ +|||+|++||||||++||
T Consensus 83 d~~~a--------------------------------------------------~~l~kl~~kyrpetk~ek------- 105 (256)
T 3izc_H 83 DRNTA--------------------------------------------------AETFKLFNKYRPETAAEK------- 105 (256)
T ss_dssp HHHHC--------------------------------------------------CCCCCCCCCCCCHHHHHH-------
T ss_pred chHHH--------------------------------------------------HHHHHHHHhcCCCCHHHH-------
Confidence 66665 455778999999999888
Q ss_pred HHHHhhccCCCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCC
Q psy6066 175 AEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKE 254 (370)
Q Consensus 175 a~~ka~~k~~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~ 254 (370)
++||+++||++|+|++
T Consensus 106 ----------------------------------------------------------------k~rl~~~a~~~a~gk~ 121 (256)
T 3izc_H 106 ----------------------------------------------------------------KERLTKEAAAVAEGKS 121 (256)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHTCCCCS
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHhcCCC
Confidence 5666667777788887
Q ss_pred -CCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE---------------------
Q psy6066 255 -DTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV--------------------- 312 (370)
Q Consensus 255 -~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV--------------------- 312 (370)
|+|+++|.+|++|+++|+++|++|+|+|||||+||||++++.|||+||+++|||||+|
T Consensus 122 ~~~~~k~p~~lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk~~s~VAIt 201 (256)
T 3izc_H 122 KQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQKTSAVAALT 201 (256)
T ss_dssp SCSSCCCSCCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEE
T ss_pred CCCCCCCChhhhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCcEEEEee
Confidence 7889999999999999999999999999999999999999999999999999999998
Q ss_pred --ccccHHHHHHHHHHHhhhhhhhHHHHhhhhCCCCCCcchHHHHHHHHHHHHh
Q psy6066 313 --DSSDKANLAKLIESVKVNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAKAK 364 (370)
Q Consensus 313 --~SeDkg~lakLve~ir~nynD~ydEi~~~wGG~ilg~ks~~~~~~~~~~~~~ 364 (370)
++||.++|++|+|+|++||||+||||+||||||+||+||+++|+++|+|++.
T Consensus 202 D~g~eDk~al~kLve~iktnynd~y~e~~~~wgg~~lg~ks~~~~~k~~ka~~~ 255 (256)
T 3izc_H 202 EVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQAKMDKRAKNSDS 255 (256)
T ss_dssp SSCCSCCHHHHHHHHHHHHHCCCCCCCCCSSCCCCCCHHHHHHHHHHHHHHHHT
T ss_pred cCChhhHHHHHHHHHHHHhhhhhhhhhHhhhcCCCccChhHHHHHHHHHHHhhc
Confidence 5689999999999999999999999999999999999999999999999864
No 4
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.2e-86 Score=627.65 Aligned_cols=242 Identities=70% Similarity=1.105 Sum_probs=88.0
Q ss_pred CCCccccCCCCccCCCccchhhhhhhcccCccccccccccccCccCCCccccccccccchhhhhhhhHHHHhhhhcCCCC
Q psy6066 7 LGKKKVVGKSKKVAPAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPP 86 (370)
Q Consensus 7 ~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~g~~i~~k~dl~rfvkwP~yir~Qrqk~il~krlKvP~~ 86 (370)
||+++ ++++|+++|+|.++++++.++++|||||+||+||||||||||+|||||||+||+||||||||+||++||||||+
T Consensus 1 ~~~~~-~~~~kk~~~~~~~~k~~~~~~~~npl~ekrpknf~ig~~i~pkrdl~rfvkwp~yirlqrq~~il~~rlkvpp~ 79 (266)
T 2zkr_f 1 MPKGK-KAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPA 79 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcc-ccccCcCCCCccccccccccccCCcccccCccccccCCCcccccchHhHhccchHHHHHHHHHHHHhhccCCCc
Confidence 78888 88999999999999999999999999999999999999999999999999999999999999999999977666
Q ss_pred CccccccccccccccccccccccccccchhHHHHHHHHHHHhhccCCCCCccccchhcchhhHHHHHHHhhhcCcchHHH
Q psy6066 87 VHQFTQAVDKQTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEA 166 (370)
Q Consensus 87 i~qf~~~ld~~~~~~~~~k~dl~rfv~wPkYirIQrQraiL~~~lKipp~i~qf~~~l~~~~~~~l~~l~~KyrPE~k~e 166 (370)
|||||++|| ++++++||+|++|||||+++|
T Consensus 80 inqf~~~ld--------------------------------------------------~~~a~~l~~l~~kyrpe~k~e 109 (266)
T 2zkr_f 80 INQFTQALD--------------------------------------------------RQTATQLLKLAHKYRPETKQE 109 (266)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred hhhcccccc--------------------------------------------------chhHHHHHHHHhhcCcccHHH
Confidence 666655555 455678899999999999988
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHH
Q psy6066 167 KKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARA 246 (370)
Q Consensus 167 kk~RL~a~a~~ka~~k~~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a 246 (370)
| ++||+++|
T Consensus 110 k-----------------------------------------------------------------------k~rl~~~a 118 (266)
T 2zkr_f 110 K-----------------------------------------------------------------------KQRLLARA 118 (266)
T ss_dssp H-----------------------------------------------------------------------HHHHHHTT
T ss_pred H-----------------------------------------------------------------------HHHHHHHH
Confidence 8 55666667
Q ss_pred HHHHcCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE--------------
Q psy6066 247 EKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-------------- 312 (370)
Q Consensus 247 ~~~~~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-------------- 312 (370)
+++|+|+.++|+++|..|+.|+++|+++|++|+|+|||||+||||++++.|||+||+++|||||+|
T Consensus 119 ~~~a~~~~~~~~k~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG~A~Gkk~ 198 (266)
T 2zkr_f 119 EKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGHLVHRKT 198 (266)
T ss_dssp SSTTTCCSCCSSSSCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHHHHHTSSC
T ss_pred HHHhcCCCCCcCCCCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCC
Confidence 777788888888999999999999999999999999999999999999999999999999999998
Q ss_pred ---------ccccHHHHHHHHHHHhhhhhhhHHHHhhhhCCCCCCcchHHHHHHHHHHHHhHHhhcC
Q psy6066 313 ---------DSSDKANLAKLIESVKVNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAKAKELAQKV 370 (370)
Q Consensus 313 ---------~SeDkg~lakLve~ir~nynD~ydEi~~~wGG~ilg~ks~~~~~~~~~~~~~~~~~~~ 370 (370)
.++|.++|++|++.+++||||+||||++|||||+||+||+++++++|+|+++|+|+++
T Consensus 199 ~s~VAItD~G~eD~~al~klve~ik~~y~d~y~e~~~~wgg~~~g~ks~~~~~~~~k~~~~e~~~k~ 265 (266)
T 2zkr_f 199 CTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKL 265 (266)
T ss_dssp CSEEEETTCSSTTTTHHHHHHHHHC------------------------------------------
T ss_pred ceEEEEeecCcchHHHHHHHHHHHHHhhhhhhhHHHHhhCCCCcCchHHHHHHHHHHHHhHHHHhhc
Confidence 3467888999999999999999999999999999999999999999999999999875
No 5
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=99.90 E-value=8.8e-25 Score=206.51 Aligned_cols=96 Identities=40% Similarity=0.526 Sum_probs=86.5
Q ss_pred HHHHHHHHhhccCCCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Q psy6066 171 LKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKI 250 (370)
Q Consensus 171 L~a~a~~ka~~k~~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~ 250 (370)
|+++|+++|+|+ ++++++|++|+.|+|+||++||+++|+||||||||||||++.|||.+ |+
T Consensus 107 L~~~a~~ka~gk-~~~~krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV~fLPaL---------------C~--- 167 (258)
T 3iz5_H 107 LLKRAQAEAEGK-TVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPAL---------------CR--- 167 (258)
T ss_dssp HHHHHHTTCCCC-SSSSCCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHHHHHHHH---------------HT---
T ss_pred HHHHHHHHhcCC-CCCCCCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHHhHHHHH---------------HH---
Confidence 889999999996 57999999999999999999999999999999999999999999997 55
Q ss_pred cCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCch
Q psy6066 251 AKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPI 292 (370)
Q Consensus 251 ~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPi 292 (370)
+++ .|++++.|-..++.++.++.+..|+|. ||+..
T Consensus 168 --k~g----VPY~iVk~KarLG~~vgrKtct~Va~t-~v~~e 202 (258)
T 3iz5_H 168 --KME----VPYCIVKGKARLGSIVHKKTASVLCLT-TVKNE 202 (258)
T ss_dssp --TTT----CCEEEESCHHHHHHHTTCSSCCSEEEE-ESCCS
T ss_pred --hcC----CCeEEECCHHHHHHHhCCccceEEEEE-ecCHH
Confidence 344 579999999999999999998877776 67664
No 6
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.88 E-value=5.3e-25 Score=186.08 Aligned_cols=83 Identities=48% Similarity=0.779 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCC-CCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc-cH
Q psy6066 240 QRLKARAEKKIAKKE-DTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS-DK 317 (370)
Q Consensus 240 ~rL~~~a~~~~~~k~-~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se-Dk 317 (370)
+||+++||++|+||+ ++|+++|.+|++|+|+|+++|++|+|+|||||+|+||++++.|||.||+++|||||+|.|. ++
T Consensus 1 ~rl~~~a~~~~~~~~~~~~~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~L 80 (113)
T 3jyw_G 1 ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARL 80 (113)
T ss_dssp CCCCSSCCCHHHHHHHHTCSSSSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTT
T ss_pred CccHHHHHHHhcCCCCCCCCCCCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 478888999999999 7999999999999999999999999999999999999999999999999999999999763 66
Q ss_pred HHHHH
Q psy6066 318 ANLAK 322 (370)
Q Consensus 318 g~lak 322 (370)
|.+.+
T Consensus 81 G~a~G 85 (113)
T 3jyw_G 81 GTLVN 85 (113)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 66644
No 7
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=99.85 E-value=6.2e-22 Score=187.25 Aligned_cols=97 Identities=42% Similarity=0.582 Sum_probs=86.4
Q ss_pred HHHHHHHHhhccCCCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Q psy6066 171 LKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKI 250 (370)
Q Consensus 171 L~a~a~~ka~~k~~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~ 250 (370)
|+++|+++|+|++ .++++|++|+.|+|+||++||+++|+|||||+||||++++.|||.+ |++
T Consensus 104 l~~~a~~ka~gk~-~~~k~p~~lk~GvneVtKaIekgKAqLVVIA~DvdPielv~~LPaL---------------Cee-- 165 (255)
T 4a17_F 104 LVAQAEAKKDGKQ-VETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELVIFLPQL---------------CRK-- 165 (255)
T ss_dssp HHHHHHHHHTTCC-CCCCCCCCEEECHHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHH---------------HHH--
T ss_pred HHHHHHHHhcCCC-CCCCCCceeecchHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHH---------------HHH--
Confidence 8899999999995 5899999999999999999999999999999999999999999997 663
Q ss_pred cCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchh
Q psy6066 251 AKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIE 293 (370)
Q Consensus 251 ~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiE 293 (370)
+ ..|+++..|-.+++.++.++.+..|+|. |+...|
T Consensus 166 ---~----~VPY~~V~sK~~LG~avGrKt~s~Vait-dv~~ED 200 (255)
T 4a17_F 166 ---N----DVPFAFVKGKAALGKLVNKKTATAVALT-EVRNED 200 (255)
T ss_dssp ---T----TCCEEEESCHHHHHHHHTSSCCSEEEEC-CCCHHH
T ss_pred ---c----CCCEEEECCHHHHHHHhCCCcceEEEee-ccCHHH
Confidence 3 3579999999999999999987766665 777654
No 8
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=99.80 E-value=3.3e-20 Score=175.69 Aligned_cols=98 Identities=35% Similarity=0.502 Sum_probs=85.9
Q ss_pred HHHHHHHHhhccC-CCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Q psy6066 171 LKARAEKKIAKKE-DTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKK 249 (370)
Q Consensus 171 L~a~a~~ka~~k~-~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~ 249 (370)
|+++|+++|+|++ |+|+++|++|+.|+|+|+++||+++|+|||||+|+||++++.||+.+ |++
T Consensus 109 l~~~a~~~a~gk~~~~~~k~p~~lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaL---------------C~k- 172 (256)
T 3izc_H 109 LTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPAL---------------CKK- 172 (256)
T ss_dssp HHHHHHHTCCCCSSCSSCCCSCCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHH---------------HHH-
T ss_pred HHHHHHHHhcCCCCCCCCCCChhhhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHH---------------HHh-
Confidence 8899999999999 89999999999999999999999999999999999999999999886 553
Q ss_pred HcCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchh
Q psy6066 250 IAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIE 293 (370)
Q Consensus 250 ~~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiE 293 (370)
...|+++..+-.+++.++.++.+..|.|. |+...|
T Consensus 173 --------~gVPy~~V~sK~eLG~A~Gkk~~s~VAIt-D~g~eD 207 (256)
T 3izc_H 173 --------MGVPYAIVKGKARLGTLVNQKTSAVAALT-EVRAED 207 (256)
T ss_dssp --------HTCCEEEESCHHHHHHHTTCSSCCSEEEE-SSCCSC
T ss_pred --------cCCCEEEECCHHHHHHHhCCCCcEEEEee-cCChhh
Confidence 23579999999999999999876666555 565543
No 9
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.75 E-value=1.5e-18 Score=146.61 Aligned_cols=81 Identities=22% Similarity=0.504 Sum_probs=72.0
Q ss_pred CcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHH-----------------
Q psy6066 261 PNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAK----------------- 322 (370)
Q Consensus 261 p~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lak----------------- 322 (370)
...+..|.++++++|++|+|+|||||+|++|++++.|||.||+++|||||+|.| +++|.+-+
T Consensus 18 ~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s~v~I~d~g~a~ 97 (121)
T 2lbw_A 18 AKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKK 97 (121)
T ss_dssp TTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCSEEEECCSCTTG
T ss_pred cCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEEEEEEEcCcchH
Confidence 356889999999999999999999999999999999999999999999999987 47777643
Q ss_pred -HHHHHhhhhhhhHHHHhhh
Q psy6066 323 -LIESVKVNFTDRYDEIRRQ 341 (370)
Q Consensus 323 -Lve~ir~nynD~ydEi~~~ 341 (370)
+++.+++||+|+|||+++.
T Consensus 98 ~~~~~~~~~y~~~y~~~~~~ 117 (121)
T 2lbw_A 98 KDGKNKEEEYKESFNEVVKE 117 (121)
T ss_dssp GGCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999875
No 10
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.71 E-value=3.8e-18 Score=162.46 Aligned_cols=113 Identities=44% Similarity=0.587 Sum_probs=89.5
Q ss_pred HHHHHHHHhhccCCCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Q psy6066 171 LKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKI 250 (370)
Q Consensus 171 L~a~a~~ka~~k~~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~ 250 (370)
|+++|+++|+|++++++++|..|..|+++|+++|++++|.|||||+|+||++++.|+|.+ |+.
T Consensus 114 l~~~a~~~a~~~~~~~~k~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~L---------------C~~-- 176 (266)
T 2zkr_f 114 LLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPAL---------------CRK-- 176 (266)
T ss_dssp HHHTTSSTTTCCSCCSSSSCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHH---------------HHH--
T ss_pred HHHHHHHHhcCCCCCcCCCCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHH---------------HHh--
Confidence 888999999999999999999999999999999999999999999999999999999987 553
Q ss_pred cCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcE
Q psy6066 251 AKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPY 309 (370)
Q Consensus 251 ~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY 309 (370)
...|++...+-.+++.++..+.+..|+|. |+..-| -.++-.|.+....-|
T Consensus 177 -------~~VPyi~v~sk~eLG~A~Gkk~~s~VAIt-D~G~eD-~~al~klve~ik~~y 226 (266)
T 2zkr_f 177 -------MGVPYCIIKGKARLGHLVHRKTCTTVAFT-QVNSED-KGALAKLVEAIRTNY 226 (266)
T ss_dssp -------HTCCEEEESCHHHHHHHHTSSCCSEEEET-TCSSTT-TTHHHHHHHHHC---
T ss_pred -------cCCCEEEECCHHHHHHHhCCCCceEEEEe-ecCcch-HHHHHHHHHHHHHhh
Confidence 23578888999999999999866655553 444332 233445555444333
No 11
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.63 E-value=2.5e-16 Score=135.90 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=69.2
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc-cHH--------------------HH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS-DKA--------------------NL 320 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se-Dkg--------------------~l 320 (370)
..++.|.++|+++|++|+|+|||||+|++|+|++.+||+||+++|||||+|.+. ++| ++
T Consensus 31 gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~~~~s~vaI~d~~~s~~ 110 (134)
T 2ale_A 31 RQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAI 110 (134)
T ss_dssp TCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHHHTTCSSCCSEEEEECCTTCTT
T ss_pred CCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEEEEEEcCChHHH
Confidence 457899999999999999999999999999999999999999999999999442 443 45
Q ss_pred HHHHHHHhhhhhhhHHHHhhh
Q psy6066 321 AKLIESVKVNFTDRYDEIRRQ 341 (370)
Q Consensus 321 akLve~ir~nynD~ydEi~~~ 341 (370)
..+++.++++|++.+.|-+.|
T Consensus 111 ~~l~~~i~~~~~~~~~~~~~~ 131 (134)
T 2ale_A 111 KTQIYAVKDKIETLLILEHHH 131 (134)
T ss_dssp HHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHhHHHhhhc
Confidence 568999999999988775544
No 12
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.51 E-value=8.5e-16 Score=129.83 Aligned_cols=111 Identities=37% Similarity=0.547 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhccC-CCCCCCCccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHH
Q psy6066 169 QRLKARAEKKIAKKE-DTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAE 247 (370)
Q Consensus 169 ~RL~a~a~~ka~~k~-~~~~kkp~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~ 247 (370)
+||+++|+++|+|++ |.|+++|++|+.|+|+++++||+++|+|||||+|+||++++.|+|.+ |+
T Consensus 1 ~rl~~~a~~~~~~~~~~~~~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~l---------------C~ 65 (113)
T 3jyw_G 1 ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPAL---------------CK 65 (113)
T ss_dssp CCCCSSCCCHHHHHHHHTCSSSSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHH---------------HH
T ss_pred CccHHHHHHHhcCCCCCCCCCCCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHH---------------HH
Confidence 378888999999999 89999999999999999999999999999999999999999999986 55
Q ss_pred HHHcCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccccHHHHHHHHHHH
Q psy6066 248 KKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKANLAKLIESV 327 (370)
Q Consensus 248 ~~~~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~SeDkg~lakLve~i 327 (370)
. ...|+++..|-.+++.++.++.+..|.|.- +++||+++|++|+|+|
T Consensus 66 ~---------~~VP~~~v~sk~~LG~a~G~k~~a~vai~d------------------------~~~ed~~~l~~l~e~~ 112 (113)
T 3jyw_G 66 K---------MGVPYAIVKGKARLGTLVNQKTSAVAALTE------------------------VRAEDEAALAKLVSTI 112 (113)
T ss_dssp H---------TTCCCEECSCSTTTHHHHCSSSCCSEEEEC------------------------SCSSTTTTTHHHHTTT
T ss_pred H---------cCCCEEEECCHHHHHHHHCCCCcEEEEEEe------------------------CCHHhHHHHHHHHHhh
Confidence 2 235799999999999999987655444442 4789999999999875
No 13
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.45 E-value=2e-14 Score=125.81 Aligned_cols=79 Identities=24% Similarity=0.555 Sum_probs=64.8
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc-cHHHHHHHHHH-----H----hhhh
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS-DKANLAKLIES-----V----KVNF 331 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se-Dkg~lakLve~-----i----r~ny 331 (370)
..++.|.++|+++|++|+|+|||||+|++|+|++.+||.||+++|||||+|.+. ++|.+.+.-.. | ..+|
T Consensus 49 gkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~~~~~s~i 128 (144)
T 2jnb_A 49 KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQL 128 (144)
T ss_dssp TCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHHHHHTCSSCCSEEEEECCTTCTT
T ss_pred CCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCceEEEEEEeCCcHHH
Confidence 347789999999999999999999999999999999999999999999999874 88877543111 1 2356
Q ss_pred hhhHHHHhh
Q psy6066 332 TDRYDEIRR 340 (370)
Q Consensus 332 nD~ydEi~~ 340 (370)
.+.|+++..
T Consensus 129 ~~~~~~~~~ 137 (144)
T 2jnb_A 129 KQQIQSIQQ 137 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666653
No 14
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.44 E-value=8.9e-14 Score=110.20 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=53.3
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc-cHHHHH
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS-DKANLA 321 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se-Dkg~la 321 (370)
.+..|.++++++|++|+|+|||||+|++| +++.|||.||+++||||+++++. ++|.+-
T Consensus 11 k~~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~ 69 (82)
T 3v7e_A 11 SIIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKAC 69 (82)
T ss_dssp EEEESHHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHH
T ss_pred CeeEcHHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 46789999999999999999999999999 99999999999999999999874 677653
No 15
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.43 E-value=7.5e-14 Score=117.69 Aligned_cols=78 Identities=45% Similarity=0.629 Sum_probs=65.5
Q ss_pred CcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEE
Q psy6066 231 RPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYC 310 (370)
Q Consensus 231 ~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~ 310 (370)
-||+-.+|..+|+..| ..+..|.++|+++|++|+|+|||||+|++|++++.|||.||+++|||||
T Consensus 12 ~p~~l~~k~~~ll~~A---------------gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~ 76 (120)
T 1xbi_A 12 VPEEIQKELLDAVAKA---------------QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYA 76 (120)
T ss_dssp CCHHHHHHHHHHHHTC---------------SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHHHHc---------------CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEE
Confidence 4556656666666532 3478999999999999999999999999999999999999999999999
Q ss_pred EEcc-ccHHHHHHH
Q psy6066 311 IVDS-SDKANLAKL 323 (370)
Q Consensus 311 iV~S-eDkg~lakL 323 (370)
++.+ +++|.+-+.
T Consensus 77 ~v~sk~eLG~a~G~ 90 (120)
T 1xbi_A 77 YVASKQDLGKAAGL 90 (120)
T ss_dssp EESCHHHHHHHTTC
T ss_pred EeCCHHHHHHHhCC
Confidence 9987 477776543
No 16
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.43 E-value=1.5e-13 Score=117.52 Aligned_cols=64 Identities=28% Similarity=0.354 Sum_probs=58.1
Q ss_pred CCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc-cHHHHHHH
Q psy6066 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS-DKANLAKL 323 (370)
Q Consensus 260 kp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se-Dkg~lakL 323 (370)
+...+..|+++++++|++|+|+|||||+|+||++++.|||+||+++||||++|++. ++|.+.++
T Consensus 21 ~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G~ 85 (126)
T 2xzm_U 21 CQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLGH 85 (126)
T ss_dssp SSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHTC
T ss_pred HcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCC
Confidence 34568899999999999999999999999999999999999999999999999874 78877654
No 17
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.40 E-value=2.5e-13 Score=113.83 Aligned_cols=79 Identities=37% Similarity=0.590 Sum_probs=65.8
Q ss_pred cCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEE
Q psy6066 232 PESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCI 311 (370)
Q Consensus 232 pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~i 311 (370)
|+.-.++-..++..|.+ + ..+..|.++|+++|++|+|+|||||+|++|.+++.|||.+|+++|||||+
T Consensus 8 p~~l~~~i~~~L~lA~k--a----------g~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 75 (119)
T 1rlg_A 8 PEDMQNEALSLLEKVRE--S----------GKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIY 75 (119)
T ss_dssp CSHHHHHHHHHHHHHHH--H----------SEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHHHHHH--h----------CCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 55555556666766652 2 35789999999999999999999999999999999999999999999999
Q ss_pred Ecc-ccHHHHHH
Q psy6066 312 VDS-SDKANLAK 322 (370)
Q Consensus 312 V~S-eDkg~lak 322 (370)
+.| +++|.+-+
T Consensus 76 ~~sk~eLG~a~G 87 (119)
T 1rlg_A 76 VKSKNDLGRAVG 87 (119)
T ss_dssp ESCHHHHHHHTT
T ss_pred eCCHHHHHHHhC
Confidence 987 47776654
No 18
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.39 E-value=3.7e-13 Score=112.98 Aligned_cols=61 Identities=34% Similarity=0.645 Sum_probs=55.7
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lak 322 (370)
..+..|.++|+++|++|+++|||||+|++|.+++.|||.+|+++|||||++.| +++|.+-+
T Consensus 28 g~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G 89 (120)
T 1vq8_F 28 GAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAG 89 (120)
T ss_dssp SCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHTT
T ss_pred CCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhC
Confidence 34789999999999999999999999999999999999999999999999987 47776654
No 19
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.36 E-value=5.5e-13 Score=112.64 Aligned_cols=79 Identities=42% Similarity=0.608 Sum_probs=64.2
Q ss_pred cCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEE
Q psy6066 232 PESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCI 311 (370)
Q Consensus 232 pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~i 311 (370)
|+.-.++-..++..|.+ + ..+..|.++|+++|++|+++|||||+|++|.+++.|||.+|+++|||||+
T Consensus 9 p~~l~~~i~~~L~lA~k--a----------gkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 76 (124)
T 2fc3_A 9 PEDLAEKAYEAVKRARE--T----------GRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVY 76 (124)
T ss_dssp CHHHHHHHHHHHHHHHH--H----------SEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHH--h----------CCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 33333445556665652 1 34789999999999999999999999999999999999999999999999
Q ss_pred Ecc-ccHHHHHH
Q psy6066 312 VDS-SDKANLAK 322 (370)
Q Consensus 312 V~S-eDkg~lak 322 (370)
+.| +++|.+-+
T Consensus 77 v~sk~eLG~a~G 88 (124)
T 2fc3_A 77 VPSKKRLGEAAG 88 (124)
T ss_dssp ESCHHHHHHHTT
T ss_pred ECCHHHHHHHhC
Confidence 987 47777654
No 20
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.35 E-value=1.1e-12 Score=111.24 Aligned_cols=80 Identities=35% Similarity=0.569 Sum_probs=65.7
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHHHHHH-----H--hhhhhh
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAKLIES-----V--KVNFTD 333 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lakLve~-----i--r~nynD 333 (370)
..++.|.++|+++|++|+++|||||+|++|.+++.|||.+|+++|||||++.| +++|.+-+.-.. | ..+|++
T Consensus 30 gklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~Gk~~~vs~vaI~d~~~~~~ 109 (122)
T 3o85_A 30 QAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGRACNVSVPTIVASIGKHDALGN 109 (122)
T ss_dssp TCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHHHHTTCSSCCSEEEECCCTTTHH
T ss_pred CCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCCCCEEEEEEEcccchHH
Confidence 34789999999999999999999999999999999999999999999999987 478877543110 1 234777
Q ss_pred hHHHHhhh
Q psy6066 334 RYDEIRRQ 341 (370)
Q Consensus 334 ~ydEi~~~ 341 (370)
.|+++...
T Consensus 110 ~~~~~~~~ 117 (122)
T 3o85_A 110 VVAEIVGK 117 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777644
No 21
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.30 E-value=2.3e-12 Score=110.84 Aligned_cols=80 Identities=25% Similarity=0.515 Sum_probs=65.8
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHHHH---------HHHhhhh
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLAKLI---------ESVKVNF 331 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~lakLv---------e~ir~ny 331 (370)
..+..|.++|+++|++|+++|||||+|++|.+++.|||.+|+++|||||++.+ +++|.+-+.- +.=..+|
T Consensus 40 gklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~~~v~~vaI~d~~~s~i 119 (135)
T 2aif_A 40 KQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVSRPVIAAAITSKDGSSL 119 (135)
T ss_dssp TCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSEEEEECCTTCTT
T ss_pred CCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCCCcEEEEEEEcCCcHHH
Confidence 35789999999999999999999999999999999999999999999999987 4788765421 1113467
Q ss_pred hhhHHHHhhh
Q psy6066 332 TDRYDEIRRQ 341 (370)
Q Consensus 332 nD~ydEi~~~ 341 (370)
.+.|+|+...
T Consensus 120 ~~~~~~~~~~ 129 (135)
T 2aif_A 120 SSQITELKDQ 129 (135)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 22
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.14 E-value=3.8e-11 Score=99.49 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=54.0
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE-cc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-DS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-~S-eDkg~lak 322 (370)
..+..|.++|+++|++|+|+|||||+|+ |.+++.+||.+|+++||||+++ .+ +++|.+-+
T Consensus 20 gkl~~G~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G 81 (110)
T 3cpq_A 20 GKVILGSKRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCG 81 (110)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTT
T ss_pred CCeeeCHHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhC
Confidence 3478999999999999999999999999 9999999999999999998877 66 47887654
No 23
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.12 E-value=5.3e-11 Score=106.72 Aligned_cols=62 Identities=24% Similarity=0.321 Sum_probs=57.4
Q ss_pred cccccchhHHHHHH--hcCcceEEEEeccCC-chhHHHhHH-----HHhhhcCCcEEEEcc-ccHHHHHHH
Q psy6066 262 NQIKQGTNTVTRLV--VKKKASLVIIAHDVD-PIELVLFLP-----ALCRKMGIPYCIVDS-SDKANLAKL 323 (370)
Q Consensus 262 ~~Lk~GineVtklI--ekkkA~LVVIA~DVd-PiElV~~LP-----aLCek~~VPY~iV~S-eDkg~lakL 323 (370)
..+..|++++++++ ++|.+.|||||.|+| |.++++||| +||+++||||++|+| +++|.+.++
T Consensus 34 ~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a~Gi 104 (165)
T 2kg4_A 34 RTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLL 104 (165)
T ss_dssp TCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHH
T ss_pred CCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHHHCC
Confidence 45789999999999 999999999999997 899988888 999999999999998 589998887
No 24
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.12 E-value=1.5e-11 Score=107.84 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=58.8
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhh--hcCCcEEEEcc-ccHHHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCR--KMGIPYCIVDS-SDKANLAKLI 324 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCe--k~~VPY~iV~S-eDkg~lakLv 324 (370)
..|..|+++++++|++|+|+|||||.|++|.+++.++|+||+ ++||||++|+| +++|.+.++.
T Consensus 39 g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~a~Gl~ 104 (143)
T 3u5c_M 39 DGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLG 104 (143)
T ss_dssp TCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHHHSSCC
T ss_pred CCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhHHhCcC
Confidence 457899999999999999999999999999999999999999 99999999998 5899887764
No 25
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.11 E-value=6.8e-11 Score=96.19 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=53.2
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE-cc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-DS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-~S-eDkg~lak 322 (370)
..+..|.++|+++|++|+|+|||||+| .|.+++.+||.+|+++||||+++ .+ +++|.+-+
T Consensus 15 gkl~~G~~~v~kai~~gka~lViiA~D-~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G 76 (101)
T 1w41_A 15 GKIVMGARKSIQYAKMGGAKLIIVARN-ARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLG 76 (101)
T ss_dssp SEEEESHHHHHHHHHHTCCSEEEEETT-SCHHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTT
T ss_pred CCEeECHHHHHHHHHcCCCcEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhC
Confidence 347789999999999999999999999 78999999999999999998875 66 47877654
No 26
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.01 E-value=3.1e-10 Score=92.48 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=52.2
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHHH
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANLA 321 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~la 321 (370)
.+..|.++|+++|++|+|+||+||+|++|. .+.+|+.+|++++|||+++.+ +++|.+-
T Consensus 18 k~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~eLG~a~ 76 (101)
T 3on1_A 18 QLLTGEEQVVKAVQNGQVTLVILSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQMLGRAI 76 (101)
T ss_dssp CEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred CEeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHHHHHHHh
Confidence 467899999999999999999999999995 789999999999999999977 4777654
No 27
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=98.99 E-value=4e-10 Score=92.06 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=51.6
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc-ccHHHH
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS-SDKANL 320 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S-eDkg~l 320 (370)
.+..|.++|+++|++|+++||+||+|++|. ...+||.+|++++|||+++.+ +++|.+
T Consensus 19 k~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~eLG~A 76 (101)
T 3v7q_A 19 KVVSGEDLVIKEIRNARAKLVLLTEDASSN-TAKKVTDKCNYYKVPYKKVESRAVLGRS 76 (101)
T ss_dssp CEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHTTCCEEEESCHHHHHHH
T ss_pred hcccchhhhHHHHhcCceeEEEEecccccc-chhhhcccccccCCCeeeechHHHHHhh
Confidence 367899999999999999999999999998 788999999999999999976 366654
No 28
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.88 E-value=1.4e-09 Score=88.24 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=51.7
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE-cc-ccHHHHHH
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-DS-SDKANLAK 322 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-~S-eDkg~lak 322 (370)
.+..|.++|+++|++|+++||+||+| .|.+++.+||.+|++++|||+.+ .+ +++|.+-+
T Consensus 15 k~v~G~~~v~kai~~gka~lViiA~D-~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~G 75 (99)
T 3j21_Z 15 KVVLGSNETIRLAKTGGAKLIIVAKN-APKEIKDDIYYYAKLSDIPVYEFEGTSVELGTLLG 75 (99)
T ss_dssp CEEESHHHHHHHHHHTCCSEEEEECC-CCHHHHHHHHHHHHHTTCCEEEECCCSCGGGGTTC
T ss_pred CEeECHHHHHHHHHcCCccEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHC
Confidence 46789999999999999999999999 68999999999999999997554 65 57876543
No 29
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=98.77 E-value=3.9e-09 Score=86.62 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=52.5
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEE-EEcc-ccHHHHHH
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYC-IVDS-SDKANLAK 322 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~-iV~S-eDkg~lak 322 (370)
.+..|.++|.++|++|+|.||+||.|++|. ...+++.+|++++|||+ |+.+ +++|.+-+
T Consensus 22 klv~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~G 82 (104)
T 4a18_G 22 KATLGYKSTIKAIRNGTAKLVFISNNCPTV-RKSEIEYYASLAQISIHHFVGSNVELGTACG 82 (104)
T ss_dssp EEEESHHHHHHHHHHTCCCEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHHHTT
T ss_pred CEeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEecCCHHHHHHHhC
Confidence 467899999999999999999999999995 68999999999999999 6877 47876644
No 30
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=98.70 E-value=1.5e-08 Score=85.04 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=54.4
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEE-cc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIV-DS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV-~S-eDkg~lak 322 (370)
..+..|.+++++.|++|+|.||+||.|++| .+..+++.+|+..+|||+++ .+ +++|.+-+
T Consensus 25 gk~~~G~~~t~kai~~gkakLVilA~D~~~-~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~G 86 (112)
T 3iz5_f 25 GKYTLGYKTVLKTLRSSLGKLIILANNCPP-LRKSEIETYAMLAKISVHHFHGNNVDLGTACG 86 (112)
T ss_dssp CEEEESHHHHHHHHHTTCCSEEEECSCCCH-HHHHHHHHHHHHTTCCEECCCCTTCTHHHHHC
T ss_pred CCeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhC
Confidence 347789999999999999999999999998 79999999999999999999 55 58987765
No 31
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=98.65 E-value=1.8e-08 Score=82.84 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=52.7
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEE-EEcc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYC-IVDS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~-iV~S-eDkg~lak 322 (370)
..+..|.+++.+.|++|++.||+||.|++| +...+++.+|++.+|||+ ++.+ +++|.+-+
T Consensus 21 gk~v~G~~~v~kai~~gkaklVilA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~G 82 (105)
T 3u5e_c 21 GKYTLGYKSTVKSLRQGKSKLIIIAANTPV-LRKSELEYYAMLSKTKVYYFQGGNNELGTAVG 82 (105)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHHTCEEEECSSCHHHHHHHTT
T ss_pred CCeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhC
Confidence 457899999999999999999999999976 689999999999999999 6766 47776543
No 32
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=98.32 E-value=5.2e-07 Score=77.03 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=53.7
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHH
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVT 272 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVt 272 (370)
+..|+++++++|++++|+|||||+|+||.+++.+++.| |+. ...|++...+-.+++
T Consensus 25 l~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~l---------------c~~---------~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 25 ISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKAL---------------CAK---------NEIKYVSVPKRASLG 80 (126)
T ss_dssp EEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHH---------------HHH---------TTCCEEEESCSHHHH
T ss_pred EeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHH---------------HHH---------hCCCEEEECCHHHHH
Confidence 67899999999999999999999999999999999987 552 235788888899999
Q ss_pred HHHhc
Q psy6066 273 RLVVK 277 (370)
Q Consensus 273 klIek 277 (370)
.++..
T Consensus 81 ~a~G~ 85 (126)
T 2xzm_U 81 EYLGH 85 (126)
T ss_dssp HHHTC
T ss_pred HHHCC
Confidence 99985
No 33
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=98.10 E-value=8.3e-06 Score=68.62 Aligned_cols=73 Identities=22% Similarity=0.356 Sum_probs=59.4
Q ss_pred CccccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchh
Q psy6066 190 PNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTN 269 (370)
Q Consensus 190 p~~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~Gin 269 (370)
.-.+..|++++++.|++++|+|||||+|++|++++.+++.+ |+. ...|++...+-.
T Consensus 18 ~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~l---------------c~~---------~~VP~~~v~sk~ 73 (121)
T 2lbw_A 18 AKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVL---------------CED---------HSVPYIFIPSKQ 73 (121)
T ss_dssp TTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHH---------------HHH---------TCCCEEECCCHH
T ss_pred cCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHH---------------HHh---------cCCcEEEECCHH
Confidence 34588999999999999999999999999999999999886 552 235788888899
Q ss_pred HHHHHHhcCc-ceEEEEe
Q psy6066 270 TVTRLVVKKK-ASLVIIA 286 (370)
Q Consensus 270 eVtklIekkk-A~LVVIA 286 (370)
+++.++..+. +..|.|.
T Consensus 74 eLG~a~g~k~~~s~v~I~ 91 (121)
T 2lbw_A 74 DLGAAGATKRPTSVVFIV 91 (121)
T ss_dssp HHHHHHTCSSCCSEEEEC
T ss_pred HHHHHhCCCCCEEEEEEE
Confidence 9999998554 4444444
No 34
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=98.03 E-value=4.1e-06 Score=70.37 Aligned_cols=68 Identities=34% Similarity=0.407 Sum_probs=56.0
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|.+++++.|++++|.||+||+|+||.+++.+++.+ |+. .+ .|++...+-.++
T Consensus 29 kl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~l---------------c~~-----~~----VP~~~v~sk~eL 84 (120)
T 1xbi_A 29 KIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYL---------------CEE-----KG----IPYAYVASKQDL 84 (120)
T ss_dssp EEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHH---------------HHH-----HT----CCEEEESCHHHH
T ss_pred CccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHH---------------HHh-----cC----CCEEEeCCHHHH
Confidence 388999999999999999999999999999999988886 542 12 468888888999
Q ss_pred HHHHhcC-cceEE
Q psy6066 272 TRLVVKK-KASLV 283 (370)
Q Consensus 272 tklIekk-kA~LV 283 (370)
..++.+. .+..|
T Consensus 85 G~a~G~~~~~s~v 97 (120)
T 1xbi_A 85 GKAAGLEVAASSV 97 (120)
T ss_dssp HHHTTCSSCCSEE
T ss_pred HHHhCCCCCEEEE
Confidence 9998875 44433
No 35
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=97.95 E-value=8.3e-06 Score=70.25 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=56.0
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|+|+++++|++++|+|||||+|+||++++.+++.+ |+. ...|++...+-.++
T Consensus 32 kl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~l---------------c~~---------~~VP~~~v~sk~eL 87 (134)
T 2ale_A 32 QLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLL---------------CED---------KNVPYVFVPSRVAL 87 (134)
T ss_dssp CEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHH---------------HHH---------HTCCEEEESCHHHH
T ss_pred CcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHH---------------HHh---------cCCCEEEECCHHHH
Confidence 478899999999999999999999999999999999886 552 23578888899999
Q ss_pred HHHHhcCcc
Q psy6066 272 TRLVVKKKA 280 (370)
Q Consensus 272 tklIekkkA 280 (370)
+.++.++..
T Consensus 88 G~a~G~~~~ 96 (134)
T 2ale_A 88 GRACGVSRP 96 (134)
T ss_dssp HHHTTCSSC
T ss_pred HHHhCCCCC
Confidence 999998753
No 36
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=97.94 E-value=6.4e-06 Score=70.10 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=47.8
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEE-EEcc-ccHHHHHH
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYC-IVDS-SDKANLAK 322 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~-iV~S-eDkg~lak 322 (370)
.++.|.++|.+.|++|++.||+||.|++| ++..+++.+|...++|+. |+.| +++|.+-+
T Consensus 27 klv~G~~~v~kaIr~gkakLVIiA~Das~-~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~G 87 (125)
T 3vi6_A 27 KYVLGYKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNNIELGTACG 87 (125)
T ss_dssp EEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHTTCEEEECSSCHHHHHHHTT
T ss_pred CeeeCHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhC
Confidence 36789999999999999999999999999 799999988776655533 4555 47776543
No 37
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=97.94 E-value=9.3e-06 Score=64.06 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=52.4
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|.++++++|++++|+||+||+|+|| ++..+++.| |+. ...|++...+-.++
T Consensus 11 k~~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~l---------------c~~---------~~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 11 SIIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSL---------------AED---------QGISVSMVESMKKL 65 (82)
T ss_dssp EEEESHHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHH---------------HHH---------HTCCEEEESCHHHH
T ss_pred CeeEcHHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHH---------------HHH---------cCCCEEEECCHHHH
Confidence 36789999999999999999999999999 899988886 552 23468888888899
Q ss_pred HHHHhcC
Q psy6066 272 TRLVVKK 278 (370)
Q Consensus 272 tklIekk 278 (370)
..++.+.
T Consensus 66 G~a~Gk~ 72 (82)
T 3v7e_A 66 GKACGIE 72 (82)
T ss_dssp HHHHTCS
T ss_pred HHHhCCC
Confidence 9888764
No 38
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=97.86 E-value=3.5e-05 Score=64.34 Aligned_cols=68 Identities=32% Similarity=0.420 Sum_probs=55.1
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|.+++++.|++++|.||+||+|++|.++..+++.+ |+. .+ .|++...+-.++
T Consensus 27 ~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~l---------------c~~-----~~----Vp~~~~~sk~eL 82 (119)
T 1rlg_A 27 KVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLL---------------CEE-----KN----VPYIYVKSKNDL 82 (119)
T ss_dssp EEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHH---------------HHH-----HT----CCEEEESCHHHH
T ss_pred CeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHH---------------HHH-----cC----CCEEEeCCHHHH
Confidence 478899999999999999999999999999988888876 442 12 467777888899
Q ss_pred HHHHhcC-cceEE
Q psy6066 272 TRLVVKK-KASLV 283 (370)
Q Consensus 272 tklIekk-kA~LV 283 (370)
..++.+. .+..|
T Consensus 83 G~a~G~~~~~~~v 95 (119)
T 1rlg_A 83 GRAVGIEVPCASA 95 (119)
T ss_dssp HHHTTCSSCCSEE
T ss_pred HHHhCCCCCeEEE
Confidence 9988875 34433
No 39
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=97.83 E-value=6.3e-05 Score=62.85 Aligned_cols=70 Identities=21% Similarity=0.357 Sum_probs=55.9
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|.+++++.|++++|.||+||+|++|.++..+++.+ |+ ..+ .|++...+-.++
T Consensus 29 ~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~l---------------c~-----~~~----Vp~~~~~sk~eL 84 (120)
T 1vq8_F 29 AVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPEL---------------AD-----EKG----VPFIFVEQQDDL 84 (120)
T ss_dssp CEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHH---------------HH-----TTC----CCEEEESCHHHH
T ss_pred CEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHH---------------HH-----hcC----CCEEEECCHHHH
Confidence 478899999999999999999999999999988888876 55 223 467777788889
Q ss_pred HHHHhcC-cceEEEE
Q psy6066 272 TRLVVKK-KASLVII 285 (370)
Q Consensus 272 tklIekk-kA~LVVI 285 (370)
..++.+. .+..|.|
T Consensus 85 G~a~G~~~~~~~vaI 99 (120)
T 1vq8_F 85 GHAAGLEVGSAAAAV 99 (120)
T ss_dssp HHHTTCSSCCSEEEE
T ss_pred HHHhCCCCCeEEEEE
Confidence 9888875 3443333
No 40
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=97.76 E-value=9.2e-05 Score=62.27 Aligned_cols=63 Identities=30% Similarity=0.398 Sum_probs=53.2
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|.+++++.|++++|.||+||+|++|.++..+++.+ |+. .+ .|++...+-.++
T Consensus 28 kl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~l---------------c~~-----~~----Vp~~~v~sk~eL 83 (124)
T 2fc3_A 28 RIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLL---------------CDE-----KK----IPYVYVPSKKRL 83 (124)
T ss_dssp EEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHH---------------HHH-----TT----CCEEEESCHHHH
T ss_pred CccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHH---------------HHH-----cC----CCEEEECCHHHH
Confidence 478899999999999999999999999999988888876 552 22 467777888888
Q ss_pred HHHHhcC
Q psy6066 272 TRLVVKK 278 (370)
Q Consensus 272 tklIekk 278 (370)
..++.+.
T Consensus 84 G~a~G~~ 90 (124)
T 2fc3_A 84 GEAAGIE 90 (124)
T ss_dssp HHHTTCS
T ss_pred HHHhCCC
Confidence 8888875
No 41
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=97.70 E-value=2.9e-05 Score=67.87 Aligned_cols=64 Identities=19% Similarity=0.383 Sum_probs=54.9
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|+|++++.|++++|+|||||+|+||++++.+++.++ + +. ..|++...+-.++
T Consensus 50 kl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC---------------~-----~~----~VP~~~v~sk~eL 105 (144)
T 2jnb_A 50 QLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLC---------------E-----DK----NVPYVFVRSKQAL 105 (144)
T ss_dssp CCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSC---------------G-----GG----CCCCEEESCSHHH
T ss_pred CccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHH---------------H-----Hh----CCCEEEECCHHHH
Confidence 3678999999999999999999999999999999999983 3 22 3568888888999
Q ss_pred HHHHhcCc
Q psy6066 272 TRLVVKKK 279 (370)
Q Consensus 272 tklIekkk 279 (370)
+.++.+..
T Consensus 106 G~a~Gk~~ 113 (144)
T 2jnb_A 106 GRACGVSR 113 (144)
T ss_dssp HHHHTCSS
T ss_pred HHHhCCCC
Confidence 99988764
No 42
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=97.49 E-value=0.00012 Score=64.71 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=53.5
Q ss_pred cccccchhHHHHHHhcC--cceEEEEeccCC-c-----hhHHHhHHHHhhhcCCcEEEEcc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKK--KASLVIIAHDVD-P-----IELVLFLPALCRKMGIPYCIVDS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIekk--kA~LVVIA~DVd-P-----iElV~~LPaLCek~~VPY~iV~S-eDkg~lak 322 (370)
..|..|+.+..+++++. .|.|||+|.|++ . -.++..+=|||-+++||.+-|++ +.+|+|.+
T Consensus 24 dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIkVdd~kkLgew~G 93 (146)
T 3cg6_A 24 GCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVG 93 (146)
T ss_dssp TCEEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHHHHC-
T ss_pred CCccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEEeCchhHHHHHhC
Confidence 57889999999999997 999999999998 2 46677888999999999999987 67888876
No 43
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=97.46 E-value=8.3e-05 Score=62.82 Aligned_cols=63 Identities=35% Similarity=0.421 Sum_probs=53.1
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|.+++++.|++++|+||+||+|++|.+++.+++.+ |+ . ...|++...+-.++
T Consensus 31 klv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~l---------------c~-----~----~~VP~~~v~sk~eL 86 (122)
T 3o85_A 31 AIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLA---------------CE-----D----KGVPYVFIGSKNAL 86 (122)
T ss_dssp CEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHH---------------HH-----T----TTCCEEEESCHHHH
T ss_pred CEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHH---------------HH-----H----hCCCEEEECCHHHH
Confidence 378899999999999999999999999999988888876 44 2 23568888888888
Q ss_pred HHHHhcC
Q psy6066 272 TRLVVKK 278 (370)
Q Consensus 272 tklIekk 278 (370)
+.++.+.
T Consensus 87 G~a~Gk~ 93 (122)
T 3o85_A 87 GRACNVS 93 (122)
T ss_dssp HHHTTCS
T ss_pred HHHhCCC
Confidence 8888764
No 44
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=97.26 E-value=0.00059 Score=58.46 Aligned_cols=64 Identities=22% Similarity=0.404 Sum_probs=53.5
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTV 271 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineV 271 (370)
.+..|.++|++.|++++|.||+||+|++|.+++.+++.+ |+. . ..|++....-.++
T Consensus 41 klv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~l---------------c~~-----~----~IP~~~v~sk~eL 96 (135)
T 2aif_A 41 QLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLV---------------CED-----K----NTPYVFVRSKVAL 96 (135)
T ss_dssp CEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHH---------------HHH-----T----TCCEEEESCHHHH
T ss_pred CcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHH---------------HHh-----c----CCcEEEECCHHHH
Confidence 478899999999999999999999999999998888876 552 2 2467777788889
Q ss_pred HHHHhcCc
Q psy6066 272 TRLVVKKK 279 (370)
Q Consensus 272 tklIekkk 279 (370)
..++.+..
T Consensus 97 G~a~G~~~ 104 (135)
T 2aif_A 97 GRACGVSR 104 (135)
T ss_dssp HHHTTCSS
T ss_pred HHHhCCCC
Confidence 99888763
No 45
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00058 Score=56.28 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=50.8
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccc-cchhH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIK-QGTNT 270 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk-~Gine 270 (370)
.+..|.+++++.|++++|.||+||+|+ |.+++.+++.| |+. .+ .|.... ..-.+
T Consensus 21 kl~~G~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~---------------c~~-----~~----Vp~~~~~~sk~e 75 (110)
T 3cpq_A 21 KVILGSKRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYY---------------AKL-----SN----IPVYQHKITSLE 75 (110)
T ss_dssp EEEESHHHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHH---------------HHH-----TT----CCEEECCSCHHH
T ss_pred CeeeCHHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHH---------------HHH-----cC----CCEEEEcCCHHH
Confidence 378899999999999999999999999 99999999886 442 22 355544 67788
Q ss_pred HHHHHhcC
Q psy6066 271 VTRLVVKK 278 (370)
Q Consensus 271 VtklIekk 278 (370)
+..++.+.
T Consensus 76 LG~a~G~~ 83 (110)
T 3cpq_A 76 LGAVCGKP 83 (110)
T ss_dssp HHHHTTCS
T ss_pred HHHHhCCc
Confidence 99998876
No 46
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=97.21 E-value=0.00036 Score=62.81 Aligned_cols=61 Identities=11% Similarity=0.215 Sum_probs=52.3
Q ss_pred cccccchhHHHHHHhc--CcceEEEEeccCC-chh-----HHHhHHHHhhhcCCcEEEEcc-ccHHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVK--KKASLVIIAHDVD-PIE-----LVLFLPALCRKMGIPYCIVDS-SDKANLAK 322 (370)
Q Consensus 262 ~~Lk~GineVtklIek--kkA~LVVIA~DVd-PiE-----lV~~LPaLCek~~VPY~iV~S-eDkg~lak 322 (370)
..|..|+.+..+++++ ..|.|||+|.|++ +-| ++..+=|||-+++|+.+-|++ +.+|+|.+
T Consensus 45 dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV~d~kkLgew~G 114 (167)
T 3ffm_A 45 GCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVG 114 (167)
T ss_dssp TCEEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHT
T ss_pred CCccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEeCCcchHHHHhC
Confidence 6788999999999998 5999999999986 444 466788999999999999987 47777776
No 47
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=97.13 E-value=0.00061 Score=55.05 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=50.5
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCccc-ccchhH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQI-KQGTNT 270 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~L-k~Gine 270 (370)
.+..|.+++++.|++++|+||+||+| .|.++..+++.+ |+. .+ .|... ..+-.+
T Consensus 16 kl~~G~~~v~kai~~gka~lViiA~D-~~~~~~~~l~~~---------------c~~-----~~----vp~~~~~~s~~e 70 (101)
T 1w41_A 16 KIVMGARKSIQYAKMGGAKLIIVARN-ARPDIKEDIEYY---------------ARL-----SG----IPVYEFEGTSVE 70 (101)
T ss_dssp EEEESHHHHHHHHHHTCCSEEEEETT-SCHHHHHHHHHH---------------HHH-----HT----CCEEEESSCHHH
T ss_pred CEeECHHHHHHHHHcCCCcEEEEeCC-CCHHHHHHHHHH---------------HHh-----cC----CCEEEecCCHHH
Confidence 36789999999999999999999999 788999988886 442 12 35554 367889
Q ss_pred HHHHHhcC
Q psy6066 271 VTRLVVKK 278 (370)
Q Consensus 271 VtklIekk 278 (370)
+..++.+.
T Consensus 71 LG~a~G~~ 78 (101)
T 1w41_A 71 LGTLLGRP 78 (101)
T ss_dssp HHHHTTCS
T ss_pred HHHHhCCC
Confidence 99999886
No 48
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=96.88 E-value=0.0019 Score=52.38 Aligned_cols=63 Identities=17% Similarity=0.234 Sum_probs=49.0
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHH
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVT 272 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVt 272 (370)
+..|.+++++.|++++|.||+||+|++|.. ...++.| |+. ...|++....-.++.
T Consensus 20 ~v~G~~~v~kai~~gka~lViiA~D~~~~~-~~~i~~~---------------c~~---------~~vp~~~~~s~~eLG 74 (101)
T 3v7q_A 20 VVSGEDLVIKEIRNARAKLVLLTEDASSNT-AKKVTDK---------------CNY---------YKVPYKKVESRAVLG 74 (101)
T ss_dssp EEESHHHHHHHHHTTCCSEEEEETTSCHHH-HHHHHHH---------------HHH---------TTCCEEEESCHHHHH
T ss_pred cccchhhhHHHHhcCceeEEEEeccccccc-hhhhccc---------------ccc---------cCCCeeeechHHHHH
Confidence 678999999999999999999999999984 4444443 542 234677777788899
Q ss_pred HHHhcCcc
Q psy6066 273 RLVVKKKA 280 (370)
Q Consensus 273 klIekkkA 280 (370)
.++.+...
T Consensus 75 ~A~Gk~~~ 82 (101)
T 3v7q_A 75 RSIGKEAR 82 (101)
T ss_dssp HHTTSSCC
T ss_pred hhhCccce
Confidence 99887643
No 49
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=96.67 E-value=0.0026 Score=51.43 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=49.0
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHH
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVT 272 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVt 272 (370)
+..|.+++++.|++++|.||+||+|++|. ....++.| |+. ...|++....-.++.
T Consensus 19 ~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~---------------c~~---------~~ip~~~~~s~~eLG 73 (101)
T 3on1_A 19 LLTGEEQVVKAVQNGQVTLVILSSDAGIH-TKKKLLDK---------------CGS---------YQIPVKVVGNRQMLG 73 (101)
T ss_dssp EEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHH---------------HHH---------HTCCEEEESCHHHHH
T ss_pred EeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHH---------------HHH---------cCCCEEEeCCHHHHH
Confidence 67899999999999999999999999996 44555554 542 124677667778888
Q ss_pred HHHhcCcce
Q psy6066 273 RLVVKKKAS 281 (370)
Q Consensus 273 klIekkkA~ 281 (370)
.++.+....
T Consensus 74 ~a~Gk~~~~ 82 (101)
T 3on1_A 74 RAIGKHERV 82 (101)
T ss_dssp HHTTSSCCS
T ss_pred HHhCCcCeE
Confidence 888876443
No 50
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.12 E-value=0.0059 Score=49.15 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=49.8
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcc-cccchhH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQ-IKQGTNT 270 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~-Lk~Gine 270 (370)
-+..|.+++++.|++++|.||+||+| .|.....+++.| |+. .+ .|.. +...-.+
T Consensus 15 k~v~G~~~v~kai~~gka~lViiA~D-~~~~~~~~i~~~---------------c~~-----~~----ip~~~~~~s~~e 69 (99)
T 3j21_Z 15 KVVLGSNETIRLAKTGGAKLIIVAKN-APKEIKDDIYYY---------------AKL-----SD----IPVYEFEGTSVE 69 (99)
T ss_dssp CEEESHHHHHHHHHHTCCSEEEEECC-CCHHHHHHHHHH---------------HHH-----TT----CCEEEECCCSCG
T ss_pred CEeECHHHHHHHHHcCCccEEEEeCC-CCHHHHHHHHHH---------------HHH-----cC----CCEEEeCCCHHH
Confidence 37789999999999999999999999 677888877775 552 22 3543 3356677
Q ss_pred HHHHHhcCc-ceEEEE
Q psy6066 271 VTRLVVKKK-ASLVII 285 (370)
Q Consensus 271 VtklIekkk-A~LVVI 285 (370)
+..++.+.- +..|.|
T Consensus 70 LG~a~Gk~~~~~~vaI 85 (99)
T 3j21_Z 70 LGTLLGKPFVVASLAI 85 (99)
T ss_dssp GGGTTCSTTCSEEEEE
T ss_pred HHHHHCCCCCEEEEEE
Confidence 888877653 333333
No 51
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=95.28 E-value=0.094 Score=47.04 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=51.2
Q ss_pred cccccchhhhHHh--hcccceEEEEecCCC-hHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccch
Q psy6066 192 QIKQGTNTVTRLV--VKKKASLVIIAHDVD-PIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGT 268 (370)
Q Consensus 192 ~i~~Gin~Vt~lI--E~kka~LVvIA~dVd-Pielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~Gi 268 (370)
-+..|++++++.+ ++..|.||+||.|+| |..+..++|. .-+.+-|++ . ..|+..+...
T Consensus 35 ~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~----------~li~alC~E-----~----~Ip~i~V~s~ 95 (165)
T 2kg4_A 35 TITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHF----------TLIQAFCCE-----N----DINILRVSNP 95 (165)
T ss_dssp CEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHH----------HHHHHHHHH-----T----TCCEEEESCH
T ss_pred CeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccH----------HHHHHHHHH-----c----CCCEEEECCH
Confidence 3678999999999 999999999999997 8888888874 123444663 2 2467777777
Q ss_pred hHHHHHHh
Q psy6066 269 NTVTRLVV 276 (370)
Q Consensus 269 neVtklIe 276 (370)
.+++++..
T Consensus 96 k~LG~a~G 103 (165)
T 2kg4_A 96 GRLAELLL 103 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHC
Confidence 88887765
No 52
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=94.83 E-value=0.041 Score=44.71 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=45.8
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcc-cccchhH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQ-IKQGTNT 270 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~-Lk~Gine 270 (370)
-+..|.+++++.|++++|.||+||.|.+|.. ...++. .|+.. ..|+. +...-.+
T Consensus 22 klv~G~~~v~kai~~gkaklViiA~D~~~~~-~~~i~~---------------~c~~~---------~ip~~~~~~s~~e 76 (104)
T 4a18_G 22 KATLGYKSTIKAIRNGTAKLVFISNNCPTVR-KSEIEY---------------YASLA---------QISIHHFVGSNVE 76 (104)
T ss_dssp EEEESHHHHHHHHHHTCCCEEEECTTSCHHH-HHHHHH---------------HHHHH---------TCEEEECSSCHHH
T ss_pred CEeECHHHHHHHHHcCCceEEEEeCCCCHHH-HHHHHH---------------HHHHc---------CCcEEEecCCHHH
Confidence 3778999999999999999999999999853 333333 35431 23565 4566778
Q ss_pred HHHHHhcCc
Q psy6066 271 VTRLVVKKK 279 (370)
Q Consensus 271 VtklIekkk 279 (370)
+..++.+.-
T Consensus 77 LG~a~Gk~~ 85 (104)
T 4a18_G 77 LGTACGKYH 85 (104)
T ss_dssp HHHHTTCSS
T ss_pred HHHHhCCcc
Confidence 888887653
No 53
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=94.46 E-value=0.014 Score=51.19 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=49.4
Q ss_pred ccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccchhHHH
Q psy6066 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVT 272 (370)
Q Consensus 193 i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~GineVt 272 (370)
|..|++++++.|++++|.||+||.|.||..++.+++.+ |+ ++. ...|+.....-.+++
T Consensus 41 l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~l---------------C~---~~e----~~IP~i~V~s~keLG 98 (143)
T 3u5c_M 41 LARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGL---------------AN---DPE----NKVPLIKVADAKQLG 98 (143)
T ss_dssp EEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHH---------------HH---CSS----SCCCCCCCSCHHHHH
T ss_pred EeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHH---------------Hh---hhh----hCCCEEEECCHHHHh
Confidence 78899999999999999999999999999999998886 43 111 234676666777777
Q ss_pred HHHh
Q psy6066 273 RLVV 276 (370)
Q Consensus 273 klIe 276 (370)
.+..
T Consensus 99 ~a~G 102 (143)
T 3u5c_M 99 EWAG 102 (143)
T ss_dssp HHSS
T ss_pred HHhC
Confidence 7654
No 54
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=94.24 E-value=0.08 Score=44.08 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=32.4
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhc
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKY 230 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky 230 (370)
-+..|.+.+++.|++++|.||+||.|.+| .....++.|
T Consensus 26 k~~~G~~~t~kai~~gkakLVilA~D~~~-~~~~~i~~~ 63 (112)
T 3iz5_f 26 KYTLGYKTVLKTLRSSLGKLIILANNCPP-LRKSEIETY 63 (112)
T ss_dssp EEEESHHHHHHHHHTTCCSEEEECSCCCH-HHHHHHHHH
T ss_pred CeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHH
Confidence 36889999999999999999999999998 455555554
No 55
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=92.97 E-value=0.06 Score=45.60 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=31.7
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhc
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKY 230 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky 230 (370)
-+..|.+.+++.|++++|.||+||.|.+| .+...++.|
T Consensus 27 klv~G~~~v~kaIr~gkakLVIiA~Das~-~~~~ki~~~ 64 (125)
T 3vi6_A 27 KYVLGYKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYY 64 (125)
T ss_dssp EEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHH
T ss_pred CeeeCHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHH
Confidence 36789999999999999999999999999 455544443
No 56
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=91.85 E-value=0.14 Score=41.77 Aligned_cols=62 Identities=24% Similarity=0.242 Sum_probs=43.9
Q ss_pred cccccchhhhHHhhcccceEEEEecCCChHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCcc-cccchhH
Q psy6066 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQ-IKQGTNT 270 (370)
Q Consensus 192 ~i~~Gin~Vt~lIE~kka~LVvIA~dVdPielv~~Lpky~pes~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~-Lk~Gine 270 (370)
-+..|.+.+++.|++++|.||++|.|.+|. ....++.| |+.. ..|.. ...--.+
T Consensus 22 k~v~G~~~v~kai~~gkaklVilA~D~~~~-~~~~i~~~---------------c~~~---------~ip~~~~~~s~~e 76 (105)
T 3u5e_c 22 KYTLGYKSTVKSLRQGKSKLIIIAANTPVL-RKSELEYY---------------AMLS---------KTKVYYFQGGNNE 76 (105)
T ss_dssp EEEESHHHHHHHHHTTCCSEEEECTTSCHH-HHHHHHHH---------------HHHH---------TCEEEECSSCHHH
T ss_pred CeeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHH---------------HHHc---------CCCEEEeCCCHHH
Confidence 478899999999999999999999999874 33444433 4421 23455 3455677
Q ss_pred HHHHHhcC
Q psy6066 271 VTRLVVKK 278 (370)
Q Consensus 271 VtklIekk 278 (370)
+..++.+.
T Consensus 77 LG~A~Gk~ 84 (105)
T 3u5e_c 77 LGTAVGKL 84 (105)
T ss_dssp HHHHTTCS
T ss_pred HHHHhCCc
Confidence 77777653
No 57
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=82.66 E-value=7.7 Score=34.01 Aligned_cols=106 Identities=22% Similarity=0.217 Sum_probs=66.6
Q ss_pred eEEEEecCCChHHHHHHhhhcCcC--c----HHHHHHHHHHHHHHHHcCCCCCCCCCCccccc-chhHHHHHHhcCcceE
Q psy6066 210 SLVIIAHDVDPIELFKFLEKYRPE--S----WEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQ-GTNTVTRLVVKKKASL 282 (370)
Q Consensus 210 ~LVvIA~dVdPielv~~Lpky~pe--s----~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~-GineVtklIekkkA~L 282 (370)
...+++||-|.-+++.|...|.-. - .-.=-.+++.+ +.|= +...-.-+-- |=.++..+|.+|+.+|
T Consensus 13 ~V~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT~gTa~~L~e----~~Gl---~v~~v~k~~eGG~p~I~d~I~~geIdl 85 (152)
T 1b93_A 13 HIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISR----ATGM---NVNAMLSGPMGGDQQVGALISEGKIDV 85 (152)
T ss_dssp EEEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETTHHHHHHH----HHCC---CCEEECCGGGTHHHHHHHHHHTTCCCE
T ss_pred EEEEEEehhhHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHH----HhCc---eeEEEEecCCCCCchHHHHHHCCCccE
Confidence 478899999999999999887211 0 00001122221 1232 2111111112 5568999999999999
Q ss_pred EEEecc---CCc-hhHHHhHHHHhhhcCCcEEEEccccHHHHHHHHHH
Q psy6066 283 VIIAHD---VDP-IELVLFLPALCRKMGIPYCIVDSSDKANLAKLIES 326 (370)
Q Consensus 283 VVIA~D---VdP-iElV~~LPaLCek~~VPY~iV~SeDkg~lakLve~ 326 (370)
||..-| -.| ..=..-|-.+|-.+||||+- + .+.+.-++++
T Consensus 86 VInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T--~--latA~a~v~a 129 (152)
T 1b93_A 86 LIFFWDPLNAVPHDPDVKALLRLATVWNIPVAT--N--VATADFIIQS 129 (152)
T ss_dssp EEEECCTTSCCTTHHHHHHHHHHHHHTTCCEES--S--HHHHHHHHTS
T ss_pred EEEcCCcccCCcccccHHHHHHHHHHcCCCEEe--C--HHHHHHHHHH
Confidence 999987 556 55566788999999999965 2 3444445544
No 58
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=80.76 E-value=7.4 Score=33.44 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=67.3
Q ss_pred eEEEEecCCChHHHHHHhhhcCcC--c----HHHHHHHHHHHHHHHHcCCCCCCCCCCcccc-cchhHHHHHHhcCcceE
Q psy6066 210 SLVIIAHDVDPIELFKFLEKYRPE--S----WEAKKQRLKARAEKKIAKKEDTPTKKPNQIK-QGTNTVTRLVVKKKASL 282 (370)
Q Consensus 210 ~LVvIA~dVdPielv~~Lpky~pe--s----~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk-~GineVtklIekkkA~L 282 (370)
.+.+++||-|.-+++.|...|.-. - .-+=-.+++.+ +.|= +..+-.-+- -|=.++..+|.+|+.+|
T Consensus 5 ~ialsv~D~dK~~~v~~a~~~~~ll~Gf~l~AT~gTa~~L~e----~~Gl---~v~~v~k~~~eG~p~I~d~I~~geIdl 77 (134)
T 2xw6_A 5 ALALIAHDAKKEEMVAFCQRHREVLARFPLVATGTTGRRIEE----ATGL---TVEKLLSGPLGGDQQMGARVAEGRILA 77 (134)
T ss_dssp EEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHH----HHCC---CCEECSCGGGTHHHHHHHHHHTTCEEE
T ss_pred EEEEEEecccHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHH----hhCc---eEEEEEecCCCCcchHHHHHHCCCccE
Confidence 478999999999999999887311 0 00001122221 1232 211111111 36678999999999999
Q ss_pred EEEecc---CCc-hhHHHhHHHHhhhcCCcEEEEccccHHHHHHHHHHH
Q psy6066 283 VIIAHD---VDP-IELVLFLPALCRKMGIPYCIVDSSDKANLAKLIESV 327 (370)
Q Consensus 283 VVIA~D---VdP-iElV~~LPaLCek~~VPY~iV~SeDkg~lakLve~i 327 (370)
||..-| -.| ..=..-|--+|-.+||||+- ....+.-+++++
T Consensus 78 VInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T----~latA~a~v~al 122 (134)
T 2xw6_A 78 VIFFRDPLTAQPHEPDVQALLRVCDVHGVPLAT----NPMAAEALIPWL 122 (134)
T ss_dssp EEEECCTTTCCTTSCCSHHHHHHHHHHTCCEEC----SHHHHHHHHHHH
T ss_pred EEEccCcccCCCccchHHHHHHHHHHcCCCeEc----CHHHHHHHHHHH
Confidence 999987 234 33355588999999999965 244455566665
No 59
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=77.21 E-value=11 Score=33.98 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=66.7
Q ss_pred eEEEEecCCChHHHHHHhhhcCcC--c----HHHHHHHHHHHHHHHHcCCCCCCCCCCccccc-chhHHHHHHhcCcceE
Q psy6066 210 SLVIIAHDVDPIELFKFLEKYRPE--S----WEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQ-GTNTVTRLVVKKKASL 282 (370)
Q Consensus 210 ~LVvIA~dVdPielv~~Lpky~pe--s----~~~Kk~rL~~~a~~~~~~k~~~~~kkp~~Lk~-GineVtklIekkkA~L 282 (370)
...++++|-|.-+++.|...|.-. - .-.=-.+++.. +.|= +...-.-+-- |=.++..+|.+|+.+|
T Consensus 29 ~V~lsv~D~dK~~lv~~ak~~~~lL~Gf~L~AT~gTa~~L~e----~~Gl---~v~~v~k~~eGG~pqI~d~I~~geIdl 101 (178)
T 1vmd_A 29 RIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQE----KLGL---KVHRLKSGPLGGDQQIGAMIAEGKIDV 101 (178)
T ss_dssp EEEEEECGGGHHHHHHHHHHSHHHHTTSEEEECHHHHHHHHH----HHCC---CCEECSCGGGTHHHHHHHHHHTTSCCE
T ss_pred EEEEEEehhhHHHHHHHHHHHHHHhcCCEEEEchHHHHHHHH----HhCc---eeEEEeecCCCCCchHHHHHHCCCccE
Confidence 478899999999999999887311 0 00001122221 1232 2111111122 5668999999999999
Q ss_pred EEEecc---CCc-hhHHHhHHHHhhhcCCcEEEEccccHHHHHHHHHH
Q psy6066 283 VIIAHD---VDP-IELVLFLPALCRKMGIPYCIVDSSDKANLAKLIES 326 (370)
Q Consensus 283 VVIA~D---VdP-iElV~~LPaLCek~~VPY~iV~SeDkg~lakLve~ 326 (370)
||..-| -.| ..=..-|-.+|-..||||+- ..+.+.-++++
T Consensus 102 VInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~T----nlatA~A~v~a 145 (178)
T 1vmd_A 102 LIFFWDPLEPQAHDVDVKALIRIATVYNIPVAI----TRSTADFLISS 145 (178)
T ss_dssp EEEECCSSSCCTTSCCHHHHHHHHHHTTCCEES----SHHHHHHHHHS
T ss_pred EEEccCccCCCcccccHHHHHHHHHHcCCCEEe----CHHHHHHHHHH
Confidence 999987 455 44456688999999999965 24444455554
No 60
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=56.28 E-value=23 Score=31.03 Aligned_cols=29 Identities=10% Similarity=0.301 Sum_probs=25.1
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCC
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVD 290 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVd 290 (370)
....+|+.+|.++++.|-+..++|.-|..
T Consensus 45 g~~~yG~~ev~~Ale~GAVetLlv~e~l~ 73 (166)
T 3ir9_A 45 GKVAYGESQVRANLEINSVDVLLLSEDLR 73 (166)
T ss_dssp TCEEESHHHHHHHHTTTCEEEEEEETTCC
T ss_pred CcEEEcHHHHHHHHHhCCceEEEEecCcc
Confidence 34578999999999999999999987764
No 61
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=44.56 E-value=45 Score=28.49 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=39.9
Q ss_pred hHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc
Q psy6066 269 NTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS 314 (370)
Q Consensus 269 neVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S 314 (370)
.++.+++.+...-.+.|-++++-- +....=-+|.+.|+||.||++
T Consensus 53 ~~~~~~l~~~~~~~l~ing~l~~~-~~~~YiklA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 53 KEAEHELKNSHNVTLLINGELQYQ-SYSSYIQMASRYGVPFKIVSD 97 (133)
T ss_dssp HHHHHHHHTCSSEEEEEETTSCHH-HHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHhhCCCcEEEEcCCCCHH-HHHHHHHHHHHcCCCeEEecC
Confidence 677889999999999999999755 778888999999999999976
No 62
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=43.70 E-value=1.1e+02 Score=24.28 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=21.4
Q ss_pred HHHHhhhcCCcEEEEccccHHHHHHHHHHHhhh
Q psy6066 298 LPALCRKMGIPYCIVDSSDKANLAKLIESVKVN 330 (370)
Q Consensus 298 LPaLCek~~VPY~iV~SeDkg~lakLve~ir~n 330 (370)
+-.+|+..|++|+.+.+.+-..+..+.+.+...
T Consensus 150 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 150 ARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp HHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456788899999998776443344554444433
No 63
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=39.35 E-value=37 Score=26.89 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=39.3
Q ss_pred cchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEcc
Q psy6066 266 QGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS 314 (370)
Q Consensus 266 ~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~S 314 (370)
.|..++..++++.....|+||..-..-+...-+-..|+++|+...++|+
T Consensus 52 ~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 52 YRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPN 100 (141)
T ss_dssp ECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCC
T ss_pred ECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCC
Confidence 3678889999998888999997654445666677789999999999875
No 64
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=39.32 E-value=43 Score=27.93 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=41.9
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccC----Cchh---HHHhHHHHhhhcCCcEEEEccc
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDV----DPIE---LVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DV----dPiE---lV~~LPaLCek~~VPY~iV~Se 315 (370)
....+|+.+|.++++.|-...++|.-|. +|.+ ++- |.-+++++|.-..||+++
T Consensus 37 g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~ 96 (124)
T 1x52_A 37 DRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSL 96 (124)
T ss_dssp GGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSS
T ss_pred CcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCC
Confidence 4567999999999999999999998774 3322 444 677778888888888875
No 65
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=38.05 E-value=1.4e+02 Score=24.79 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=33.8
Q ss_pred cchhHHHHHHhcCcceEEEEeccC-----CchhHHHhHHHHhhhcCCcEEEEccc
Q psy6066 266 QGTNTVTRLVVKKKASLVIIAHDV-----DPIELVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 266 ~GineVtklIekkkA~LVVIA~DV-----dPiElV~~LPaLCek~~VPY~iV~Se 315 (370)
-|++.+...++.|+...||+. ++ +..|++ -.+|+++||.+++++..
T Consensus 50 p~l~~ll~~~~~g~id~vvv~-~ldRL~R~~~~~l---~~~l~~~gv~v~~~~~~ 100 (143)
T 3ilx_A 50 KGFLKLLRMILNNEVSRVITA-YPDRLVRFGFEIL---EEVCKAHNCEIVVLNQE 100 (143)
T ss_dssp HHHHHHHHHHHTTCEEEEEES-SHHHHCSSCHHHH---HHHHHHTTCEEEESCSS
T ss_pred HHHHHHHHHHHhCCCCEEEEE-eCCcccccHHHHH---HHHHHHcCCEEEEEeCC
Confidence 478999999999988866554 44 344553 36799999999888543
No 66
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=37.34 E-value=28 Score=33.69 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=46.1
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCC-chhHHHhHHHHhhhcCCcEEEEccc
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVD-PIELVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVd-PiElV~~LPaLCek~~VPY~iV~Se 315 (370)
...+|+.+|.++++.|-...++|.-|.. ..+ +.+|.-+|+++|.-..||+++
T Consensus 265 ~~~YG~~eV~~Ale~GAVetLlV~d~l~rr~~-~~~L~e~~~~~G~~V~ivs~~ 317 (347)
T 2qi2_A 265 MGVYGRDQTESALQMGALSDLIITDEMFRTED-GRRSLSIAQTVGTRIHIVSVS 317 (347)
T ss_dssp CEEESHHHHHHHHHTTCEEEEEEEHHHHTSHH-HHHHHHHHHHHTCEEEEECTT
T ss_pred CEEEcHHHHHHHHHcCCCeEEEEecccccchh-HHHHHHHHHHcCCEEEEECCC
Confidence 3568999999999999999999998865 445 888999999999999999876
No 67
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=36.02 E-value=41 Score=28.23 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=35.7
Q ss_pred hHHHHHHhcCcceEEEEeccC--CchhHHHhHHHHhhhcCCcEEE
Q psy6066 269 NTVTRLVVKKKASLVIIAHDV--DPIELVLFLPALCRKMGIPYCI 311 (370)
Q Consensus 269 neVtklIekkkA~LVVIA~DV--dPiElV~~LPaLCek~~VPY~i 311 (370)
.++..+|.+|+.+|||-.-|- .|..=...+-.+|-++||||+-
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 569999999999999998765 4455667788999999999954
No 68
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=31.93 E-value=1.9e+02 Score=22.83 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=21.0
Q ss_pred HhHHHHhhhcCCcEEEEccccHHHHHHHHHHHh
Q psy6066 296 LFLPALCRKMGIPYCIVDSSDKANLAKLIESVK 328 (370)
Q Consensus 296 ~~LPaLCek~~VPY~iV~SeDkg~lakLve~ir 328 (370)
..+-.+|+..|+||+.+.+.+-..+..+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 129 KQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp HHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 345578899999999987754333444444433
No 69
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=31.01 E-value=65 Score=30.97 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=45.6
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccc
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~Se 315 (370)
....+|+.+|.++++.|.+..++|.-| -+++.+|.-.+..+|.-..+|+++
T Consensus 298 g~a~yG~~eV~~Al~~GaVetLlv~d~---rd~~~~L~e~a~~~G~~V~ivs~~ 348 (373)
T 3agk_A 298 GMIVYGEKDVEAALEMGAVKTLLIHES---REDLEEWVEKAKSSGAQVIVVPES 348 (373)
T ss_dssp CCEEESHHHHHHHHHTTCEEEEEEETT---CTTHHHHHHHHTTTTCEEEEECTT
T ss_pred CcEeeCHHHHHHHHHhCCccEEEEeCC---hhHHHHHHHHHHHcCCEEEEECCC
Confidence 345789999999999999999999987 378999999999999999999876
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=29.21 E-value=2.2e+02 Score=22.76 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=19.9
Q ss_pred hHHHHhhhcCCcEEEEccccHHHHHHHHHHH
Q psy6066 297 FLPALCRKMGIPYCIVDSSDKANLAKLIESV 327 (370)
Q Consensus 297 ~LPaLCek~~VPY~iV~SeDkg~lakLve~i 327 (370)
.+-.+|++.|+||+.+.+.+-..+..+.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 147 QAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp HHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 3456788899999888765433344444443
No 71
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=28.65 E-value=86 Score=25.73 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=44.4
Q ss_pred EEEEeccCC--chhHHHhHHHHhhhcCCcEEEEccccHHHHHHHHHHHhhhhhhhHHHHhhhhCCCCCCcch
Q psy6066 282 LVIIAHDVD--PIELVLFLPALCRKMGIPYCIVDSSDKANLAKLIESVKVNFTDRYDEIRRQWGGGSLGSKS 351 (370)
Q Consensus 282 LVVIA~DVd--PiElV~~LPaLCek~~VPY~iV~SeDkg~lakLve~ir~nynD~ydEi~~~wGG~ilg~ks 351 (370)
..++-.|.+ +-++.-.|-.+--...||.+||+.+-.|-++.|.+...+. .-+++.+.+|++-+..+.
T Consensus 44 ~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~G~~IGG~ddl~~l~~~G---~L~~lL~~~g~~~~~~~~ 112 (127)
T 3l4n_A 44 YYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQG---KLLESLQVWSDGKFSVEQ 112 (127)
T ss_dssp CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEECCCHHHHHHHHHTT---CHHHHHHHTCTTSCEEEE
T ss_pred cEEEEecCCCCHHHHHHHHHHHcCCCCcceEEECCEEEcCHHHHHHHHHCC---CHHHHHHHhcCCcEEEEE
Confidence 444555543 3555555554445578999999988777777777765443 345677888988776543
No 72
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=27.04 E-value=56 Score=31.65 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=46.0
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCc---hhHHHhHHHHhhhcCCcEEEEccc
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDP---IELVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdP---iElV~~LPaLCek~~VPY~iV~Se 315 (370)
....+|+.+|.++++.|-..-++|.-|..= -+.+.+|--.++++|.-..||+++
T Consensus 279 g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~ 335 (357)
T 3j15_A 279 GLVAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSE 335 (357)
T ss_dssp TTEEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcEEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCC
Confidence 345689999999999999999998866543 457889999999999999999875
No 73
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=26.99 E-value=2.5e+02 Score=22.60 Aligned_cols=28 Identities=4% Similarity=-0.031 Sum_probs=15.7
Q ss_pred HHHHhhhcCCcEEEEcccc-HHHHHHHHH
Q psy6066 298 LPALCRKMGIPYCIVDSSD-KANLAKLIE 325 (370)
Q Consensus 298 LPaLCek~~VPY~iV~SeD-kg~lakLve 325 (370)
+-.+|++.|++|+.+.+.+ -..+..+.+
T Consensus 156 ~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 156 AQDWATTNTLDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp HHHHHHHTTCEEEECCC-------CHHHH
T ss_pred HHHHHHHcCCEEEEeccCCCCcCHHHHHH
Confidence 4467888999999887765 433444333
No 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=26.68 E-value=1.7e+02 Score=24.22 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=19.4
Q ss_pred HHHHhhhcCCcEEEEccccHHHHHHHHHHH
Q psy6066 298 LPALCRKMGIPYCIVDSSDKANLAKLIESV 327 (370)
Q Consensus 298 LPaLCek~~VPY~iV~SeDkg~lakLve~i 327 (370)
+-.+|+..|++|+.+.+.+-..+..|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 164 ARELADKYGIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp HHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred HHHHHHHCCCcEEEEECCCCCCHHHHHHHH
Confidence 456788899999999775433344444333
No 75
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=25.68 E-value=76 Score=29.06 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=40.4
Q ss_pred cccccchhHHHHHHhcC--cceEEEEeccCCchhHHHhHHHHhhhcCCcEEEEccccHHHHH
Q psy6066 262 NQIKQGTNTVTRLVVKK--KASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKANLA 321 (370)
Q Consensus 262 ~~Lk~GineVtklIekk--kA~LVVIA~DVdPiElV~~LPaLCek~~VPY~iV~SeDkg~la 321 (370)
..+..|.+-|..+++.+ ...-++++.+...-. ..-+-.+|++.++|+..|+.+.+..++
T Consensus 12 ~~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~i~v~~v~~~~l~~ls 72 (253)
T 1gz0_A 12 SEMIYGIHAVQALLERAPERFQEVFILKGREDKR-LLPLIHALESQGVVIQLANRQYLDEKS 72 (253)
T ss_dssp CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCTT-THHHHHHHHHHTCEEEEECSHHHHHTT
T ss_pred cEEEEEHHHHHHHHhcCCCCeEEEEEECCccchh-HHHHHHHHHHCCCcEEEeCHHHHHHHh
Confidence 46789999999999987 456666666543211 222345688889999999776555443
No 76
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=25.52 E-value=2.8e+02 Score=27.69 Aligned_cols=28 Identities=11% Similarity=0.108 Sum_probs=24.4
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCC
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVD 290 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVd 290 (370)
...+|+.+|.++++.|-...++|.-+.+
T Consensus 305 ~a~YG~~eV~~Ale~GAVetLLIsD~l~ 332 (441)
T 3e20_C 305 KYCFGVVDTMNALQEGAVETLLCFADLD 332 (441)
T ss_dssp CCCCSHHHHHHHHHSSCCSEEEEETTCC
T ss_pred cEEECHHHHHHHHHhCCccEEEEecccc
Confidence 4568999999999999999999987664
No 77
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=25.15 E-value=2.5e+02 Score=22.14 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=19.1
Q ss_pred HHHHhhhcCCcEEEEccc-cHHHHHHHHHH
Q psy6066 298 LPALCRKMGIPYCIVDSS-DKANLAKLIES 326 (370)
Q Consensus 298 LPaLCek~~VPY~iV~Se-Dkg~lakLve~ 326 (370)
.-.+|++.|+||+.+.+. +-..+..+.+.
T Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 146 GKEMATKYNIPYIETSAKDPPLNVDKTFHD 175 (183)
T ss_dssp HHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred HHHHHHHhCCeEEEeccCCCCCCHHHHHHH
Confidence 456888999999998876 33234444443
No 78
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=24.55 E-value=2.1e+02 Score=23.00 Aligned_cols=20 Identities=5% Similarity=0.160 Sum_probs=15.3
Q ss_pred HHHHhhhcCCcEEEEccccH
Q psy6066 298 LPALCRKMGIPYCIVDSSDK 317 (370)
Q Consensus 298 LPaLCek~~VPY~iV~SeDk 317 (370)
.-.+|+..|++|+.+.+.+-
T Consensus 150 ~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 150 AQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp HHHHHHHTTCCEEECCSSSG
T ss_pred HHHHHHHcCCEEEEEeCCcC
Confidence 44688889999988877644
No 79
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=24.31 E-value=89 Score=25.89 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=26.1
Q ss_pred HHHhcCcceEEEEeccCC-----chhHHHhHHHHhhhcCCcEEEEcc
Q psy6066 273 RLVVKKKASLVIIAHDVD-----PIELVLFLPALCRKMGIPYCIVDS 314 (370)
Q Consensus 273 klIekkkA~LVVIA~DVd-----PiElV~~LPaLCek~~VPY~iV~S 314 (370)
..++...+.+||+++|+. +.++..++-.|. +.++|+++|+-
T Consensus 26 ~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l~-~~~~pv~~v~G 71 (228)
T 1uf3_A 26 KLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILS-EAHLPTAYVPG 71 (228)
T ss_dssp THHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHG-GGCSCEEEECC
T ss_pred HHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHH-hcCCcEEEECC
Confidence 344444678999999973 223334555554 45889888854
No 80
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=23.93 E-value=2.5e+02 Score=22.56 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=19.8
Q ss_pred hHHHHhhhcCCcEEEEccccHHHHHHHHHHH
Q psy6066 297 FLPALCRKMGIPYCIVDSSDKANLAKLIESV 327 (370)
Q Consensus 297 ~LPaLCek~~VPY~iV~SeDkg~lakLve~i 327 (370)
.+-.+|++.|++|+.+.+.+-..+..|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 149 DGRRLADDLGFEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp HHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 3456788899999988775433344444443
No 81
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=23.39 E-value=2.7e+02 Score=21.78 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=19.0
Q ss_pred HHHHhhhcCCcEEEEccccHHHHHHHHHHH
Q psy6066 298 LPALCRKMGIPYCIVDSSDKANLAKLIESV 327 (370)
Q Consensus 298 LPaLCek~~VPY~iV~SeDkg~lakLve~i 327 (370)
+-.+|++.+++|+.+.+.+-..+..+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 146 AKNRAEQWNVNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp HHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 345778889999888775433344444443
No 82
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=23.20 E-value=2.6e+02 Score=27.17 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=46.0
Q ss_pred cccccchhHHHHHHhcCcceEEEEeccCCc-----hhHHHhHHHHhhhcCCcEEEEccc
Q psy6066 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDP-----IELVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 262 ~~Lk~GineVtklIekkkA~LVVIA~DVdP-----iElV~~LPaLCek~~VPY~iV~Se 315 (370)
....+|+.+|.++++.|-...++|.-|..= -+.+.+|--.++++|.-..||+++
T Consensus 284 g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~ 342 (364)
T 3obw_A 284 ELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKE 342 (364)
T ss_dssp SSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTT
T ss_pred CcEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCC
Confidence 456789999999999999999999877532 357889999999999999999875
No 83
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=23.19 E-value=2.9e+02 Score=22.16 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=18.3
Q ss_pred HHHHhhhcCCcEEEEccccHHHHHHHHHH
Q psy6066 298 LPALCRKMGIPYCIVDSSDKANLAKLIES 326 (370)
Q Consensus 298 LPaLCek~~VPY~iV~SeDkg~lakLve~ 326 (370)
+-.+++..|+||+.+.+.+-..+..+.+.
T Consensus 142 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 142 AKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp HHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred HHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 44577889999999977543234444433
No 84
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=22.44 E-value=2.7e+02 Score=21.80 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=19.8
Q ss_pred HHHHhhhcCCcEEEEccccHHHHHHHHHHHh
Q psy6066 298 LPALCRKMGIPYCIVDSSDKANLAKLIESVK 328 (370)
Q Consensus 298 LPaLCek~~VPY~iV~SeDkg~lakLve~ir 328 (370)
.-.+|+..|++|+.+.+.+-..+..+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 139 GEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp HHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 3467888899998887654433445544443
No 85
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=22.00 E-value=2.9e+02 Score=21.75 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=17.7
Q ss_pred HHHHhhhcCCcEEEEccccHHHHHHHHHHH
Q psy6066 298 LPALCRKMGIPYCIVDSSDKANLAKLIESV 327 (370)
Q Consensus 298 LPaLCek~~VPY~iV~SeDkg~lakLve~i 327 (370)
+-.+|+..|++|+.+.+.+-..+..+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 136 GEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp HHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 346788999999988775433344444443
No 86
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=20.52 E-value=71 Score=31.10 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=44.6
Q ss_pred ccccchhHHHHHHhcCcceEEEEeccCCchh----HHHhHHHHhhhcCCcEEEEccc
Q psy6066 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIE----LVLFLPALCRKMGIPYCIVDSS 315 (370)
Q Consensus 263 ~Lk~GineVtklIekkkA~LVVIA~DVdPiE----lV~~LPaLCek~~VPY~iV~Se 315 (370)
...+|..+|.++++.|-..-++|.-|..=-+ .+.+|--.++++|.-..||+++
T Consensus 265 ~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~ 321 (352)
T 3oby_A 265 RVAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTE 321 (352)
T ss_dssp SEEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTT
T ss_pred cEEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCC
Confidence 3468999999999999999999987653222 6888999999999999999875
No 87
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=20.09 E-value=3e+02 Score=21.36 Aligned_cols=30 Identities=13% Similarity=0.194 Sum_probs=18.9
Q ss_pred HHHHhhhcCCcEEEEccccHHHHHHHHHHH
Q psy6066 298 LPALCRKMGIPYCIVDSSDKANLAKLIESV 327 (370)
Q Consensus 298 LPaLCek~~VPY~iV~SeDkg~lakLve~i 327 (370)
.-.+|...+++|+.+.+.+-..+..+.+.+
T Consensus 137 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 137 ASAFGASHHVAYFEASAKLRLNVDEAFEQL 166 (181)
T ss_dssp HHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 345788889999888775433344444443
No 88
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=20.04 E-value=2.4e+02 Score=22.69 Aligned_cols=69 Identities=10% Similarity=0.195 Sum_probs=43.1
Q ss_pred ccchhHHHHHHhcCcceEEEEec----cCCchhHHHhHHHHhhhcCCcEEEEccc-cH-HHHHHHHHHHhhhhhh
Q psy6066 265 KQGTNTVTRLVVKKKASLVIIAH----DVDPIELVLFLPALCRKMGIPYCIVDSS-DK-ANLAKLIESVKVNFTD 333 (370)
Q Consensus 265 k~GineVtklIekkkA~LVVIA~----DVdPiElV~~LPaLCek~~VPY~iV~Se-Dk-g~lakLve~ir~nynD 333 (370)
+-|++.....++.|+...||+.. -=++.|....+-.+|+++||.+++++.. |. .....++-.+-..+.+
T Consensus 57 Rp~l~~ll~~~~~g~~d~lvv~~ldRl~R~~~~~~~~~~~~l~~~gv~l~~~~~~~d~~~~~~~~~~~i~~~~ae 131 (138)
T 3bvp_A 57 RPAMQRLINDIENKAFDTVLVYKLDRLSRSVRDTLYLVKDVFTKNKIDFISLNESIDTSSAMGSLFLTILSAINE 131 (138)
T ss_dssp CHHHHHHHHGGGGTSCSEEEESSHHHHCSCHHHHHHHHHHTTGGGTCEEEETTTTEETTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCCCEEEEecCCCCCCCcchHHHHHHHHHHHH
Confidence 34789999999999887665553 1245564444556789999999888532 32 1223444444444443
Done!