RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy6066
         (370 letters)



>gnl|CDD|240382 PTZ00365, PTZ00365, 60S ribosomal protein L7Ae-like; Provisional.
          Length = 266

 Score =  165 bits (420), Expect = 5e-49
 Identities = 128/360 (35%), Positives = 170/360 (47%), Gaps = 100/360 (27%)

Query: 11  KVVGKSKKVAPAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRI 70
           K   K  K  PAP  +KK + KK  +PLFEK  RNF IG DI+PK DLSR+V+WP+YI  
Sbjct: 2   KGSVKKSKKLPAPAPLKKSKKKKQKHPLFEKTPRNFRIGGDIRPKVDLSRYVRWPRYI-- 59

Query: 71  QRQKAVLQKRLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKR 130
                                                            +QRQ+ VL +R
Sbjct: 60  ------------------------------------------------LLQRQRRVLLQR 71

Query: 131 LKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKP 190
           LKVPP ++QFT  +DK  ASQL + L KY+PE+   KK RL   AE K A  E+  +KKP
Sbjct: 72  LKVPPALNQFTYTLDKNQASQLLRLLSKYKPETRAEKKARLLKEAE-KAAAGEEVESKKP 130

Query: 191 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKI 250
             +K G N VT LV  KKA LV+IAHDVDPIEL  FL                      +
Sbjct: 131 FMLKYGLNHVTDLVEYKKAKLVVIAHDVDPIELVCFL--------------------PAL 170

Query: 251 AKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYC 310
            +K++ P      I +G + + +LV +K A++V I +                       
Sbjct: 171 CRKKEVPY----CIIKGKSRLGKLVHQKTAAVVAIDN----------------------- 203

Query: 311 IVDSSDKANLAKLIESVKVNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAKAKELAQKV 370
            V   D+A    L ++ +  F D   E+RR+WGGG +G KS   IAK E+  A E A+K+
Sbjct: 204 -VRKEDQAEFDNLCKNFRAMFNDNS-ELRRRWGGGIMGIKSQHVIAKREKLIAMENAKKL 261


>gnl|CDD|140249 PTZ00222, PTZ00222, 60S ribosomal protein L7a; Provisional.
          Length = 263

 Score =  119 bits (300), Expect = 2e-31
 Identities = 92/262 (35%), Positives = 133/262 (50%), Gaps = 53/262 (20%)

Query: 99  GQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFTQAVDKQTASQLFKFLEK 158
           GQD+   RDLSRF++WP ++ +QR+K VLQ+RLKVPP ++QFT+ +D+ + ++L K ++K
Sbjct: 38  GQDVPYARDLSRFMRWPTFVTMQRKKRVLQRRLKVPPALNQFTKVLDRSSRNELLKLIKK 97

Query: 159 YRPESWEAKKQRL-KARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHD 217
           Y PE+ +A++ RL K   EKK   K+   TK P  +  G   VTR + KK+A +V+IA++
Sbjct: 98  YAPETRKARRDRLHKVAEEKKKDPKKTVSTKAPLAVVTGLQEVTRAIEKKQARMVVIANN 157

Query: 218 VDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVK 277
           VDP+EL  ++                                 PN  +   N +   +VK
Sbjct: 158 VDPVELVLWM---------------------------------PNLCR--ANKIPYAIVK 182

Query: 278 KKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVD--SSDKANLAKLIESVKVNFTDRY 335
             A L                 A+ RK      I D  + D+A L  LI SV   F  R 
Sbjct: 183 DMARLG---------------DAIGRKTATCVAITDVNAEDEAALKNLIRSVNARFLSRS 227

Query: 336 DEIRRQWGGGSLGSKSAARIAK 357
           D IRRQWGG  L  +S A + K
Sbjct: 228 DVIRRQWGGLQLSLRSRAELRK 249


>gnl|CDD|216387 pfam01248, Ribosomal_L7Ae, Ribosomal protein L7Ae/L30e/S12e/Gadd45
           family.  This family includes: Ribosomal L7A from
           metazoa, Ribosomal L8-A and L8-B from fungi, 30S
           ribosomal protein HS6 from archaebacteria, 40S ribosomal
           protein S12 from eukaryotes, Ribosomal protein L30 from
           eukaryotes and archaebacteria. Gadd45 and MyD118.
          Length = 95

 Score = 67.2 bits (165), Expect = 4e-14
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKA 318
            K  ++  G   VT+ + + KA LVIIA D DP E V  LPALC++  +PY  V S  K 
Sbjct: 11  LKTGKLVLGLKEVTKALRRGKAKLVIIAEDCDPEEKVKLLPALCKEKNVPYVYVPS--KK 68

Query: 319 NLAKLI 324
            L +  
Sbjct: 69  ELGEAC 74



 Score = 43.3 bits (103), Expect = 9e-06
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKY 230
            K  ++  G   VT+ + + KA LVIIA D DP E  K L   
Sbjct: 11  LKTGKLVLGLKEVTKALRRGKAKLVIIAEDCDPEEKVKLLPAL 53


>gnl|CDD|224277 COG1358, RPL8A, Ribosomal protein HS6-type (S12/L30/L7a)
           [Translation, ribosomal structure and biogenesis].
          Length = 116

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDK 317
            +  ++K+GTN VT+ + + KA LV+IA DV P ELV  LPALC +  +PY  V S  +
Sbjct: 23  SRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKE 81



 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLE 228
            +  ++K+GTN VT+ + + KA LV+IA DV P EL K L 
Sbjct: 23  SRAGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLP 63


>gnl|CDD|179766 PRK04175, rpl7ae, 50S ribosomal protein L7Ae; Validated.
          Length = 122

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 29/62 (46%), Positives = 36/62 (58%)

Query: 264 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKANLAKL 323
           IK+GTN  T+ V +  A LV+IA DVDP E+V  LP LC +  IPY  V S      A  
Sbjct: 31  IKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGKAAG 90

Query: 324 IE 325
           +E
Sbjct: 91  LE 92



 Score = 38.3 bits (90), Expect = 0.001
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 193 IKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFL-----EKYRPESWEAKKQRLKARA 246
           IK+GTN  T+ V +  A LV+IA DVDP E+   L     EK  P  +   K+ L   A
Sbjct: 31  IKKGTNETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLGKAA 89


>gnl|CDD|188367 TIGR03677, rpl7ae, 50S ribosomal protein L7Ae.  This model
           specifically identifies the archaeal version of the
           large ribosomal complex L7 protein. The family is a
           narrower version of the pfam01248 model which also
           recognizes the L30 protein. Multifunctional RNA-binding
           protein that recognizes the K-turn motif in ribosomal
           RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts
           with protein L15e.
          Length = 117

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query: 263 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSD 316
           +IK+GTN VT+ V +  A LV+IA DV+P E+V  LPALC + GIPY  V + +
Sbjct: 26  KIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYIYVKTKE 79



 Score = 37.8 bits (88), Expect = 0.002
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 192 QIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFL-----EKYRPESWEAKKQRLKARA 246
           +IK+GTN VT+ V +  A LV+IA DV+P E+   L     EK  P  +   K+ L A A
Sbjct: 26  KIKKGTNEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYIYVKTKEDLGAAA 85


>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
          Length = 2084

 Score = 31.6 bits (71), Expect = 0.91
 Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 145  DKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLV 204
            +K  A++  K  E+ + ++ EAKK     +   +  KKE    KK  ++K+         
Sbjct: 1659 NKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE----- 1713

Query: 205  VKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQI 264
             KKKA  +  A + + I+  +  ++   +  +A++ +     +KKIA  +    KK  +I
Sbjct: 1714 EKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773

Query: 265  KQGTNTVTRLVVKKK 279
            ++    V    + ++
Sbjct: 1774 RKEKEAVIEEELDEE 1788


>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
          Length = 977

 Score = 30.3 bits (68), Expect = 1.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 158 KYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTN 198
           K R ESW+ KK + K  A+KK A K   P ++  + K   +
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKPSAD 155



 Score = 30.3 bits (68), Expect = 1.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 229 KYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTN 269
           K R ESW+ KK + K  A+KK A K   P ++  + K   +
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKPSAD 155


>gnl|CDD|163557 TIGR03845, sulfopyru_alph, sulfopyruvate decarboxylase, alpha
           subunit.  This model represents the alpha subunit, or
           the N-terminal region, of sulfopyruvate decarboxylase,
           an enzyme of coenzyme M biosynthesis. Coenzyme M is
           found almost exclusively in the methanogenic archaea.
           However, the enzyme also occurs in Roseovarius
           nubinhibens ISM in a degradative pathway, where the
           resulting sulfoacetaldehyde is desulfonated to acetyl
           phosphate, then converted to acetyl-CoA (see
           PMID:19581363) [Biosynthesis of cofactors, prosthetic
           groups, and carriers, Other, Energy metabolism,
           Methanogenesis].
          Length = 157

 Score = 29.2 bits (66), Expect = 1.9
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)

Query: 297 FLPALCRKMGIPYCIVDSSDKANLAKLIESV 327
             P L   +GIPY I    ++   AKLIE  
Sbjct: 110 ATPKLLDTLGIPYTIPREPEE---AKLIEKA 137


>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1.  This domain
           family is found in eukaryotes, and is approximately 40
           amino acids in length. The family is found in
           association with pfam07719, pfam00515. There is a single
           completely conserved residue L that may be functionally
           important. NARP1 is the mammalian homologue of a yeast
           N-terminal acetyltransferase that regulates entry into
           the G(0) phase of the cell cycle.
          Length = 516

 Score = 30.3 bits (69), Expect = 2.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 219 DPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQ 263
            P E  K  +K R    +A+K+  +  A KK A+      K P+ 
Sbjct: 407 SPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDG 451



 Score = 29.1 bits (66), Expect = 3.7
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 143 AVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQ 192
                + ++  K  +K R    +A+K+  +  A KK A+      K P+ 
Sbjct: 402 ENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDG 451


>gnl|CDD|212101 cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of
           endoplasmic reticulum(ER)/cytosolic class II
           alpha-mannosidases; glycoside hydrolase family 38
           (GH38).  The subfamily is represented by Saccharomyces
           cerevisiae vacuolar alpha-mannosidase Ams1, rat
           ER/cytosolic alpha-mannosidase Man2C1, and similar
           proteins. Members in this family share high sequence
           similarity. None of them have any classical signal
           sequence or membrane spanning domains, which are typical
           of sorting or targeting signals. Ams1 functions as a
           second resident vacuolar hydrolase in S. cerevisiae. It
           aids in recycling macromolecular components of the cell
           through hydrolysis of terminal, non-reducing
           alpha-d-mannose residues. Ams1 utilizes both the
           cytoplasm to vacuole targeting (Cvt, nutrient-rich
           conditions) and autophagic (starvation conditions)
           pathways for biosynthetic delivery to the vacuole.
           Man2C1is involved in oligosaccharide catabolism in both
           the ER and cytosol. It can catalyze the cobalt-dependent
           cleavage of alpha 1,2-, alpha 1,3-, and alpha 1,6-linked
           mannose residues. Members in this family are retaining
           glycosyl hydrolases of family GH38 that employs a
           two-step mechanism involving the formation of a covalent
           glycosyl-enzyme complex. Two carboxylic acids positioned
           within the active site act in concert: one as a
           catalytic nucleophile and the other as a general
           acid/base catalyst.
          Length = 252

 Score = 29.4 bits (67), Expect = 2.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 147 QTASQLFKFLEKYRPESWEAKKQRLKA 173
           Q+ +QL+++LE+  PE +E  K+R+K 
Sbjct: 46  QSQAQLYEWLEEDYPELFERIKERVKE 72


>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
          Length = 510

 Score = 29.4 bits (67), Expect = 3.4
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 209 ASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIA--KKEDTPTKK 260
            +L  IA+  D   L+ FL++Y P +      RL    E  I   +    P KK
Sbjct: 369 LNLAQIANAEDKEVLWGFLKRYAPGATPETHPRLDRLVEYAINWYRDFVAPEKK 422


>gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit,
           Gram-positive.  Operationally, topoisomerase IV is a
           type II topoisomerase required for the decatenation step
           of chromosome segregation. Not every bacterium has both
           a topo II and a topo IV. The topo IV families of the
           Gram-positive bacteria and the Gram-negative bacteria
           appear not to represent a single clade among the type II
           topoisomerases, and are represented by separate models
           for this reason [DNA metabolism, DNA replication,
           recombination, and repair].
          Length = 637

 Score = 29.4 bits (66), Expect = 3.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 143 AVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQ 195
            VD+     LF FLE+   ++     + +KAR  K+ AKK     K   + K+
Sbjct: 348 VVDEIVQDHLFFFLEENNNDAKLLIDKAIKARDAKEAAKKAREEKKSGKKPKK 400


>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2.  This family consists
           of several Barren protein homologues from several
           eukaryotic organisms. In Drosophila Barren (barr) is
           required for sister-chromatid segregation in mitosis.
           barr encodes a novel protein that is present in
           proliferating cells and has homologues in yeast and
           human. Mitotic defects in barr embryos become apparent
           during cycle 16, resulting in a loss of PNS and CNS
           neurons. Centromeres move apart at the
           metaphase-anaphase transition and Cyclin B is degraded,
           but sister chromatids remain connected, resulting in
           chromatin bridging. Barren protein localises to
           chromatin throughout mitosis. Colocalisation and
           biochemical experiments indicate that Barren associates
           with Topoisomerase II throughout mitosis and alters the
           activity of Topoisomerase II. It has been suggested that
           this association is required for proper chromosomal
           segregation by facilitating the decatenation of
           chromatids at anaphase. This family forms one of the
           three non-structural maintenance of chromosomes (SMC)
           subunits of the mitotic condensation complex along with
           Cnd1 and Cnd3.
          Length = 719

 Score = 29.0 bits (65), Expect = 5.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 5   KKLGKKKVVGKSKK-VAPAP--LAVKKVEVKKVVNPLFEKKARNFGIG 49
           KK  KKK   K +  +      L VKK++++  V+PLF+K + +F  G
Sbjct: 183 KKKAKKKRQRKPESTLEKNFEALNVKKLDLEFAVDPLFKKTSADFDEG 230


>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2.  It is vital for
           effective cell-replication that replication is not
           stalled at any point by, for instance, damaged bases.
           Rtf2 stabilizes the replication fork stalled at the
           site-specific replication barrier RTS1 by preventing
           replication restart until completion of DNA synthesis by
           a converging replication fork initiated at a flanking
           origin. The RTS1 element terminates replication forks
           that are moving in the cen2-distal direction while
           allowing forks moving in the cen2-proximal direction to
           pass through the region. Rtf2 contains a C2HC2 motif
           related to the C3HC4 RING-finger motif, and would appear
           to fold up, creating a RING finger-like structure but
           forming only one functional Zn2+ ion-binding site.
          Length = 254

 Score = 28.5 bits (64), Expect = 5.8
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 165 EAKKQRLKARAEKKIAKKEDTPTKKPNQIK-QGTNTVTRLVVKKKASLVIIAHDVDPIEL 223
           E  K RL+    KK  KK+   TKK N        TV+  V  + +S           E 
Sbjct: 170 ELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVG-----EA 224

Query: 224 FKFLEKYRPESWEAKKQRLKA 244
            K  +K        K +  K+
Sbjct: 225 KKLKKKRSIAPDNEKSEVYKS 245


>gnl|CDD|153321 cd07637, BAR_ACAP3, The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP
           with Coiled-coil, ANK repeat and PH domain containing
           protein 3.  BAR domains are dimerization, lipid binding
           and curvature sensing modules found in many different
           proteins with diverse functions. ACAP3 (ArfGAP with
           Coiled-coil, ANK repeat and PH domain containing protein
           3), also called centaurin beta-5, is presumed to be an
           Arf GTPase activating protein (GAP) based on its
           similarity to the Arf6-specific GAPs ACAP1 and ACAP2.
           The specific function of ACAP3 is still unknown. ACAP3
           contains an N-terminal BAR domain, followed by a
           Pleckstrin homology (PH) domain, an Arf GAP domain, and
           C-terminal ankyrin (ANK) repeats. BAR domains form
           dimers that bind to membranes, induce membrane bending
           and curvature, and may also be involved in
           protein-protein interactions.
          Length = 200

 Score = 27.7 bits (61), Expect = 8.8
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 140 FTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIA--KKEDTPTKKPNQIKQGT 197
           F QA  +    QL  F+++   +  E KKQ  K R + +IA  K    P  KP+++++ T
Sbjct: 81  FDQA-QRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPHEVEEAT 139

Query: 198 NTVT 201
           +T+T
Sbjct: 140 STLT 143


>gnl|CDD|237105 PRK12457, PRK12457, 2-dehydro-3-deoxyphosphooctonate aldolase;
           Provisional.
          Length = 281

 Score = 27.8 bits (62), Expect = 9.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 300 ALCRKMGIPYCIVDSSDKAN 319
            + RK+GIP+    S DKAN
Sbjct: 41  EVTRKLGIPFVFKASFDKAN 60


>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes
           [acetolactate synthase, pyruvate dehydrogenase
           (cytochrome), glyoxylate carboligase, phosphonopyruvate
           decarboxylase] [Amino acid transport and metabolism /
           Coenzyme metabolism].
          Length = 550

 Score = 28.0 bits (63), Expect = 10.0
 Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 146 KQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQI 193
           K T   L + L+  R   W  +    +A       ++      KP  +
Sbjct: 318 KATLEALLEELKPERAA-WLEELLEARAAYRDLALEELADDGIKPQYV 364


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,779,124
Number of extensions: 1820266
Number of successful extensions: 2859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2763
Number of HSP's successfully gapped: 100
Length of query: 370
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 272
Effective length of database: 6,590,910
Effective search space: 1792727520
Effective search space used: 1792727520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.0 bits)