RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6066
(370 letters)
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 266
Score = 152 bits (383), Expect = 6e-44
Identities = 166/361 (45%), Positives = 196/361 (54%), Gaps = 98/361 (27%)
Query: 10 KKVVGKSKKVAPAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIR 69
K K KKVAPAP VKK E KKVVNPLFEK+ +NFGIGQDIQPKRDL+RFVKWP+YIR
Sbjct: 3 KGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIR 62
Query: 70 IQRQKAVLQKRLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQK 129
+QRQ+A+L KRLKVPP ++QFTQA+D+QT
Sbjct: 63 LQRQRAILYKRLKVPPAINQFTQALDRQT------------------------------- 91
Query: 130 RLKVPPPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKK 189
A+QL K KYRPE+ + KKQRL ARAEKK A K D PTK+
Sbjct: 92 -------------------ATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKR 132
Query: 190 PNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKK 249
P ++ G NTVT LV KKA LV+IAHDVDPIEL F L A K
Sbjct: 133 PPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVF---------------LPALCRKM 177
Query: 250 IAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPY 309
P I +G + LV +K + V
Sbjct: 178 ---------GVPYCIIKGKARLGHLVHRKTCTTVAFTQ---------------------- 206
Query: 310 CIVDSSDKANLAKLIESVKVNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAKAKELAQK 369
V+S DK LAKL+E+++ N+ DRYDEIRR WGG LG KS ARIAKLE+AKAKELA K
Sbjct: 207 --VNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATK 264
Query: 370 V 370
+
Sbjct: 265 L 265
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H
3o58_H 3o5h_H 3u5e_G 3u5i_G
Length = 256
Score = 149 bits (377), Expect = 4e-43
Identities = 114/349 (32%), Positives = 154/349 (44%), Gaps = 99/349 (28%)
Query: 15 KSKKVAPAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQK 74
KKVAPAP K + K NPL +NFGIGQ +QPKR+LSR+VKWP+Y+R
Sbjct: 3 PGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVR----- 57
Query: 75 AVLQKRLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVP 134
+QRQK +L RLKVP
Sbjct: 58 ---------------------------------------------VQRQKKILSIRLKVP 72
Query: 135 PPVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKK-IAKKEDTPTKKPNQI 193
P + QF +D+ TA++ FK KYRPE+ KK+RL A K + + KP +
Sbjct: 73 PTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAV 132
Query: 194 KQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKK 253
K G N V L+ KKA LV+IA+DVDPIEL FL + KK
Sbjct: 133 KYGLNHVVALIENKKAKLVLIANDVDPIELVVFL--------------------PALCKK 172
Query: 254 EDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVD 313
P +VK KA L + + L V
Sbjct: 173 MGVPY---------------AIVKGKARLGTLVNQKTSAVAAL-------------TEVR 204
Query: 314 SSDKANLAKLIESVKVNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAK 362
+ D+A LAKL+ ++ NF D+YDE+++ WGGG LG+K+ A++ K +
Sbjct: 205 AEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQAKMDKRAKNS 253
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_H
Length = 258
Score = 137 bits (345), Expect = 2e-38
Identities = 122/355 (34%), Positives = 167/355 (47%), Gaps = 100/355 (28%)
Query: 16 SKKVAPAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKA 75
K+ AP K + +KV NPLFEK+ + FGIG + P
Sbjct: 3 PKRGGRAP-VPAKKKTEKVTNPLFEKRPKQFGIGGALPP--------------------- 40
Query: 76 VLQKRLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPP 135
K+DL RFVKWPK +RIQRQ+ +L++RLKVPP
Sbjct: 41 -----------------------------KKDLHRFVKWPKVVRIQRQRRILKQRLKVPP 71
Query: 136 PVHQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQ 195
++QFT+ +DK A+ LFK L KYRPE AKK+RL RA+ + A+ + KKP +K
Sbjct: 72 ALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAE-AEGKTVEAKKPIVVKY 130
Query: 196 GTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKED 255
G N VT L+ + KA LV+IAHDVDPIEL +L +
Sbjct: 131 GLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRK---------------------- 168
Query: 256 TPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315
V +VK KA L I H L V +
Sbjct: 169 -------------MEVPYCIVKGKARLGSIVHKKTASVL-------------CLTTVKNE 202
Query: 316 DKANLAKLIESVKVNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAKAKELAQKV 370
DK +K++E++K NF D++DE+R++WGGG +GSKS A+ E+ AKE AQ++
Sbjct: 203 DKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRM 257
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_F 4a1c_F 4a1e_F
Length = 255
Score = 136 bits (342), Expect = 4e-38
Identities = 119/351 (33%), Positives = 158/351 (45%), Gaps = 101/351 (28%)
Query: 20 APAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQK 79
AP + K + +K NPLF+ K R+F +G DIQP
Sbjct: 4 APKKI-TKPKKAEKKKNPLFQAKPRSFRVGGDIQP------------------------- 37
Query: 80 RLKVPPPVHQFTQAVDKQTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQ 139
KRDL+RFV+WP+YI +QRQK VL +RLKVPP +HQ
Sbjct: 38 -------------------------KRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQ 72
Query: 140 FTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNT 199
FT+ +DK +S LFK L Y PE KKQRL A+AE K + TKKP +K G N
Sbjct: 73 FTKTLDKNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAK-KDGKQVETKKPIVLKYGLNH 131
Query: 200 VTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTK 259
+T L+ K+A LV+IAHDVDPIEL FL ++ +K D P
Sbjct: 132 ITTLIENKQAKLVVIAHDVDPIELVIFL--------------------PQLCRKNDVPF- 170
Query: 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKAN 319
VK KA+L + + + L V + DKA
Sbjct: 171 --------------AFVKGKAALGKLVNKKTATAVAL-------------TEVRNEDKAK 203
Query: 320 LAKLIESVKVNFTDRYDEIRRQWGGGSLGSKSAARIAKLERAKAKELAQKV 370
L + E K N+ DE+R+ WGGG LG KS ++ L +A +E +K
Sbjct: 204 LQQFSELFKTNYNA-NDELRKTWGGGILGQKSQHKVEALAKAVQEEQIKKA 253
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 84.3 bits (208), Expect = 3e-20
Identities = 39/79 (49%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 240 QRLKARAEKKIAKKEDT-PTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFL 298
+RL A K + KP +K G N V L+ KKA LV+IA+DVDPIELV+FL
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFL 60
Query: 299 PALCRKMGIPYCIVDSSDK 317
PALC+KMG+PY IV +
Sbjct: 61 PALCKKMGVPYAIVKGKAR 79
Score = 60.0 bits (145), Expect = 1e-11
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 169 QRLKARAEKKIAKKEDT-PTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFL 227
+RL A K + KP +K G N V L+ KKA LV+IA+DVDPIEL FL
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFL 60
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA
binding protein/structural protein complex; HET: EPE;
1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1
PDB: 1ra4_A* 1sds_A 3paf_A
Length = 120
Score = 73.8 bits (181), Expect = 2e-16
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 242 LKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPAL 301
+K + ++I K+ K +IK+G N VT+ V + A LVIIA DV P E+V LP L
Sbjct: 8 VKFKVPEEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYL 67
Query: 302 CRKMGIPYCIVDS 314
C + GIPY V S
Sbjct: 68 CEEKGIPYAYVAS 80
Score = 51.1 bits (122), Expect = 2e-08
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 171 LKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFL 227
+K + ++I K+ K +IK+G N VT+ V + A LVIIA DV P E+ L
Sbjct: 8 VKFKVPEEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHL 64
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription
factor, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP:
d.79.3.1
Length = 135
Score = 73.0 bits (179), Expect = 6e-16
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Query: 222 ELFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKAS 281
E F K P + ++ ++ Q+++G N T+ + + A
Sbjct: 9 EDTGFNPKAFPLASPDLNNKIINLVQQA---------CNYKQLRKGANEATKALNRGIAE 59
Query: 282 LVIIAHDVDPIELVLFLPALCRKMGIPYCIVDS 314
+V++A D +P+E++L LP +C PY V S
Sbjct: 60 IVLLAADAEPLEILLHLPLVCEDKNTPYVFVRS 92
Score = 54.1 bits (130), Expect = 2e-09
Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 143 AVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTR 202
+ AS+ F K P + ++ ++ Q+++G N T+
Sbjct: 1 GSSQNEASEDTGFNPKAFPLASPDLNNKIINLVQQA---------CNYKQLRKGANEATK 51
Query: 203 LVVKKKASLVIIAHDVDPIELFKFL 227
+ + A +V++A D +P+E+ L
Sbjct: 52 ALNRGIAEIVLLAADAEPLEILLHL 76
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX,
RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Length = 144
Score = 71.2 bits (174), Expect = 4e-15
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 228 EKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAH 287
K P + ++L ++ Q+++G N T+ + + + +++A
Sbjct: 24 PKAYPLADAHLTKKLLDLVQQS---------CNYKQLRKGANEATKTLNRGISEFIVMAA 74
Query: 288 DVDPIELVLFLPALCRKMGIPYCIVDSSDKANLAKLI 324
D +P+E++L LP LC +PY V S K L +
Sbjct: 75 DAEPLEIILHLPLLCEDKNVPYVFVRS--KQALGRAC 109
Score = 46.5 bits (110), Expect = 1e-06
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 138 HQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGT 197
H + ++ K P + ++L ++ Q+++G
Sbjct: 5 HHHHSSGIEEGRMTEADVNPKAYPLADAHLTKKLLDLVQQS---------CNYKQLRKGA 55
Query: 198 NTVTRLVVKKKASLVIIAHDVDPIELFKFL 227
N T+ + + + +++A D +P+E+ L
Sbjct: 56 NEATKTLNRGISEFIVMAADAEPLEIILHL 85
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP,
RNA binding protein; NMR {Saccharomyces cerevisiae} PDB:
2lbx_A
Length = 121
Score = 69.6 bits (170), Expect = 7e-15
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 28/124 (22%)
Query: 240 QRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLP 299
++L + K + K K +K+G V + + K + LV+IA D+ P +++ +P
Sbjct: 2 KKLNKKVLKTVKK-----ASKAKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIP 56
Query: 300 ALCRKMGIPYCIVDS-----------------------SDKANLAKLIESVKVNFTDRYD 336
LC +PY + S + K + E K +F +
Sbjct: 57 VLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVK 116
Query: 337 EIRR 340
E++
Sbjct: 117 EVQA 120
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome,
RNA binding protein; 1.56A {Aeropyrum pernix} SCOP:
d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D*
3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C
3lwv_C 3hjw_C* 2czw_A 1pxw_A
Length = 124
Score = 69.4 bits (170), Expect = 8e-15
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 43/141 (30%)
Query: 226 FLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVII 285
++ PE K RA ++ +IK+GTN T+ V + A LV+I
Sbjct: 3 YVRFEVPEDLAEKAYEAVKRA------------RETGRIKKGTNETTKAVERGLAKLVVI 50
Query: 286 AHDVDPIELVLFLPALCRKMGIPYCIVDSS-----------------------DKANLAK 322
A DVDP E+V+ LP LC + IPY V S + + +
Sbjct: 51 AEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAASVAIIEPGDAETLVRE 110
Query: 323 LIESVKVNFTDRYDEIRRQWG 343
++E VK E+R + G
Sbjct: 111 IVEKVK--------ELRAKAG 123
Score = 43.6 bits (103), Expect = 1e-05
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 155 FLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVII 214
++ PE K RA ++ +IK+GTN T+ V + A LV+I
Sbjct: 3 YVRFEVPEDLAEKAYEAVKRA------------RETGRIKKGTNETTKAVERGLAKLVVI 50
Query: 215 AHDVDPIELFKFLEKY 230
A DVDP E+ L
Sbjct: 51 AEDVDPPEIVMHLPLL 66
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA
binding protein, KINK T ribosomal protein; 1.81A
{Giardia lamblia}
Length = 122
Score = 69.1 bits (169), Expect = 1e-14
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 229 KYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHD 288
+ P + E L + IK+G N + V + KA LVIIA D
Sbjct: 6 RAIPFANEELSLELLNLVKH---------GASLQAIKRGANEALKQVNRGKAELVIIAAD 56
Query: 289 VDPIELVLFLPALCRKMGIPYCIVDSSDKANLAKL 323
DPIE+VL LP C G+PY + S K L +
Sbjct: 57 ADPIEIVLHLPLACEDKGVPYVFIGS--KNALGRA 89
Score = 44.5 bits (105), Expect = 4e-06
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 158 KYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHD 217
+ P + E L + IK+G N + V + KA LVIIA D
Sbjct: 6 RAIPFANEELSLELLNLVKH---------GASLQAIKRGANEALKQVNRGKAELVIIAAD 56
Query: 218 VDPIELFKFL 227
DPIE+ L
Sbjct: 57 ADPIEIVLHL 66
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast,
His-TAG, RNA binding protein; 1.80A {Saccharomyces
cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A
3siv_A 1e7k_A
Length = 134
Score = 69.6 bits (170), Expect = 1e-14
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 227 LEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIA 286
+ P+++ L + + + Q+K+G N T+ + + + +I+A
Sbjct: 1 MSAPNPKAFPLADAALTQQILDVVQQA-----ANLRQLKKGANEATKTLNRGISEFIIMA 55
Query: 287 HDVDPIELVLFLPALCRKMGIPYCIVDS 314
D +PIE++L LP LC +PY V S
Sbjct: 56 ADCEPIEILLHLPLLCEDKNVPYVFVPS 83
Score = 43.4 bits (102), Expect = 1e-05
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 156 LEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIA 215
+ P+++ L + + + Q+K+G N T+ + + + +I+A
Sbjct: 1 MSAPNPKAFPLADAALTQQILDVVQQA-----ANLRQLKKGANEATKTLNRGISEFIIMA 55
Query: 216 HDVDPIELFKFL 227
D +PIE+ L
Sbjct: 56 ADCEPIEILLHL 67
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F*
1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F*
1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F*
1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Length = 120
Score = 66.4 bits (162), Expect = 8e-14
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 237 AKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVL 296
L+ A + + + +K+GTN T+ + + A LV +A DV P E+V+
Sbjct: 8 DVPADLEDDALEALEV-----ARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVM 62
Query: 297 FLPALCRKMGIPYCIVDSSDKANLAKLI 324
+P L + G+P+ V+ + +L
Sbjct: 63 HIPELADEKGVPFIFVEQ--QDDLGHAA 88
Score = 42.1 bits (99), Expect = 3e-05
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 166 AKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFK 225
L+ A + + + +K+GTN T+ + + A LV +A DV P E+
Sbjct: 8 DVPADLEDDALEALEV-----ARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVM 62
Query: 226 FL 227
+
Sbjct: 63 HI 64
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Length = 126
Score = 64.3 bits (156), Expect = 5e-13
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDK 317
+ I +G + V R + K+A V +A D D V + ALC K I Y V
Sbjct: 20 NCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRAS 78
Score = 40.8 bits (95), Expect = 9e-05
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFL-----EKYRPESWEAKKQRL 242
+ I +G + V R + K+A V +A D D K + + K+ L
Sbjct: 20 NCQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASL 79
Query: 243 KARAEKKIAKKEDTPTK 259
A + K
Sbjct: 80 GEYLGHFTANAKGEIKK 96
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn,
L7AE-like, A member L7AE/L30E superfamily; HET: SAM;
2.80A {Bacillus subtilis}
Length = 82
Score = 61.5 bits (150), Expect = 2e-12
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKA 318
+ I GT + + + V++A D DP L + +L GI +V+S
Sbjct: 7 SQAKSIIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVES--MK 63
Query: 319 NLAKLI 324
L K
Sbjct: 64 KLGKAC 69
Score = 38.0 bits (89), Expect = 4e-04
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDP 220
+ I GT + + + V++A D DP
Sbjct: 7 SQAKSIIIGTKQTVKALKRGSVKEVVVAKDADP 39
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA
complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP:
d.79.3.1
Length = 119
Score = 62.1 bits (151), Expect = 3e-12
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 237 AKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVL 296
+ ++ A + K ++ ++K+GTN T+ V + A LV IA DVDP E+V
Sbjct: 6 EVPEDMQNEALSLLEK-----VRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVA 60
Query: 297 FLPALCRKMGIPYCIVDSSDKANLAKLI 324
LP LC + +PY V S K +L + +
Sbjct: 61 HLPLLCEEKNVPYIYVKS--KNDLGRAV 86
Score = 40.2 bits (94), Expect = 1e-04
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 166 AKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFK 225
+ ++ A + K ++ ++K+GTN T+ V + A LV IA DVDP E+
Sbjct: 6 EVPEDMQNEALSLLEK-----VRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVA 60
Query: 226 FL 227
L
Sbjct: 61 HL 62
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 2e-09
Identities = 53/365 (14%), Positives = 116/365 (31%), Gaps = 68/365 (18%)
Query: 17 KKVAPAPLAV-KKVEVKKVVN-PLFEKKARN-FGIGQDIQPKRDLSRFVKW---PKYIRI 70
K V P ++ K E+ ++ F + + + +FV+ Y +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFL 94
Query: 71 QRQKAVLQKRLKVP-PPVHQFTQAVDK-QTGQDIQPKRDLSRFVKWPKYIRIQRQKAVLQ 128
++ + P + + D+ + K ++SR Y++++ +A+L+
Sbjct: 95 MSP---IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL---QPYLKLR--QALLE 146
Query: 129 KRLKVPPP---VH--------------QFTQAVDKQTASQLF--KFLEKYRPESWEAKKQ 169
R P + + V + ++F PE+ Q
Sbjct: 147 LR---PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 170 RLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKK--KASLVIIAHDV-DP--IELF 224
+L + + + D + +I + RL+ K + L+++ +V + F
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAF 262
Query: 225 KF----LEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVK--- 277
L R + L A I+ + T P+++K L++K
Sbjct: 263 NLSCKILLTTRFKQ---VTDFLSAATTTHISLDHHSMTLTPDEVKS-------LLLKYLD 312
Query: 278 -KKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKANLAKLIESVKVNFTDRY- 335
+ L +P L + R D+ N KL ++ +
Sbjct: 313 CRPQDLPREVLTTNPRRLSII-AESIRDG---LATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 336 DEIRR 340
E R+
Sbjct: 369 AEYRK 373
Score = 44.1 bits (103), Expect = 6e-05
Identities = 49/301 (16%), Positives = 84/301 (27%), Gaps = 104/301 (34%)
Query: 11 KVVGKSKKVAPAPLAVKKVEVKKVVNPLFEKKARNFGIGQDIQPKRDLSRFVKWPKY--- 67
K + + P EV NP I + I + L+ + W
Sbjct: 309 KYLDCRPQDLPR-------EVLTT-NPRRLS-----IIAESI--RDGLATWDNWKHVNCD 353
Query: 68 -----IRI---------QRQK----AVLQKRLKVPPPVHQ-FTQAVDKQTGQDIQPK-RD 107
I R+ +V +P + V K + K
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 108 LSRFVKWPK---------YIRIQRQ---KAVLQKRL--------------KVPPPV---- 137
S K PK Y+ ++ + + L + + +PP +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 138 -----HQFTQAVDKQTASQL------FKFLE-KYRPE--SWEAKK------QRLKARAEK 177
H + + F+FLE K R + +W A Q+LK +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK-FYKP 532
Query: 178 KIAKKEDTPTKKPNQIKQ-----GTNTVTRLVVKKKASLVIIA--HDVDPIELFKFLEKY 230
I + + N I N L+ K L+ IA + + I F E +
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEEN----LICSKYTDLLRIALMAEDEAI----FEEAH 584
Query: 231 R 231
+
Sbjct: 585 K 585
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding,
K-turn RNA, hypothetical R protein, RNA binding protein;
HET: CIT; 1.55A {Bacillus subtilis}
Length = 101
Score = 40.8 bits (96), Expect = 5e-05
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSD 316
+ ++ G + V + + +A LV++ D + C +PY V+S
Sbjct: 15 NRARKVVSGEDLVIKEIRNARAKLVLLTEDASS-NTAKKVTDKCNYYKVPYKKVESRA 71
Score = 31.9 bits (73), Expect = 0.078
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFL 227
+ ++ G + V + + +A LV++ D K
Sbjct: 15 NRARKVVSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVT 54
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A;
translation, ribosome, ribosomal, ribosomal R ribosomal
protein, eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5g_M
Length = 143
Score = 37.9 bits (87), Expect = 0.001
Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 262 NQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCR--KMGIPYCIVDSSDK 317
+ + +G T+ + + +A LV++ V ++ + L + +P V + +
Sbjct: 39 DGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQ 96
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Length = 101
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSD 316
+ Q+ G V + V + +LVI++ D L C IP +V +
Sbjct: 14 ARARQLLTGEEQVVKAVQNGQVTLVILSSDAGI-HTKKKLLDKCGSYQIPVKVVGNRQ 70
Score = 29.6 bits (67), Expect = 0.44
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDP 220
+ Q+ G V + V + +LVI++ D
Sbjct: 14 ARARQLLTGEEQVVKAVQNGQVTLVILSSDAGI 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.042
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 145 DKQTASQLFKFLEKYRPESWEAKKQRLKARAE 176
+KQ +L L+ Y +S A +KA E
Sbjct: 18 EKQALKKLQASLKLYADDS--APALAIKATME 47
Score = 33.4 bits (75), Expect = 0.055
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 10 KKVVGKSKKVAP--AP-LAVK-KVE 30
KK+ K A AP LA+K +E
Sbjct: 23 KKLQASLKLYADDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.23
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 35/99 (35%)
Query: 161 PES---W-EAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAH 216
PES W E +++RL+ +++ ++KA
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEW--------------------REKAK------ 117
Query: 217 DVDPIELFKFLEKYRPESWEAKKQRLKARAEKKIAKKED 255
+L ++ ++ E E K + + + +
Sbjct: 118 ----KDLEEWNQRQS-EQVEKNKINNRIADKAFYQQPDA 151
Score = 30.1 bits (67), Expect = 0.76
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 232 PES---W-EAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKAS 281
PES W E +++RL+ +++ K +++ + V K K +
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_F
Length = 190
Score = 29.0 bits (65), Expect = 0.99
Identities = 5/56 (8%), Positives = 13/56 (23%), Gaps = 1/56 (1%)
Query: 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315
K ++ +TR ++ ++ + I I
Sbjct: 23 KVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKL-QVDAWFGTRRTMAAIRTAISHVQ 77
Score = 26.7 bits (59), Expect = 5.8
Identities = 4/41 (9%), Positives = 10/41 (24%)
Query: 189 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEK 229
K ++ +TR ++ F +
Sbjct: 23 KVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTR 63
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Length = 104
Score = 28.2 bits (63), Expect = 1.3
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315
+ + G + + + A LV I+++ + I S
Sbjct: 19 RSGKATLGYKSTIKAIRNGTAKLVFISNNCPT-VRKSEIEYYASLAQISIHHFVGS 73
Score = 27.0 bits (60), Expect = 3.4
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 189 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEK 229
+ + G + + + A LV I+++ + +
Sbjct: 19 RSGKATLGYKSTIKAIRNGTAKLVFISNNCPTVRKSEIEYY 59
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f
3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 1ck2_A 1cn7_A 1nmu_B*
3jyw_2
Length = 105
Score = 28.2 bits (63), Expect = 1.5
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDK 317
K + G + + + + K+ L+IIA + L +
Sbjct: 19 KSGKYTLGYKSTVKSLRQGKSKLIIIAANTPV-LRKSELEYYAMLSKTKVYYFQGGNN 75
Score = 27.0 bits (60), Expect = 4.1
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 189 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEK 229
K + G + + + + K+ L+IIA + + +
Sbjct: 19 KSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYY 59
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo
sapiens} PDB: 2zkr_6 1ysh_C
Length = 125
Score = 28.3 bits (63), Expect = 2.1
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDK 317
K + G +++ + KA LVI+A++ + ++
Sbjct: 24 KSGKYVLGYKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNNI 80
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport,
vacuole binding, secreatory vescIle binding, structural
protein; 2.25A {Saccharomyces cerevisiae}
Length = 419
Score = 29.1 bits (64), Expect = 2.4
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 148 TASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGTNTVTRLVVKK 207
T +QL K + +Y+ +E+ + R I KKE + N K ++ + + +
Sbjct: 316 TPAQLQKLISQYQVADYESPIPQEILRYVADIVKKEAALSSSGNDSKGHEHSSSIFITPE 375
Query: 208 KASLVIIAHDVDPIELFKFLEKYRPES 234
+ F +E Y P
Sbjct: 376 TGP-FTDPFSLIKTRKFDQVEAYIPAW 401
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 2.5
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 18/68 (26%)
Query: 87 VHQFTQAVDKQTGQDIQP---------------KRDLSRFVKWPKYIRIQRQKAVLQKRL 131
+ + V K+TG ++ R L +I++Q+ + L
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII---EL 1882
Query: 132 KVPPPVHQ 139
+ + +
Sbjct: 1883 QKSLSLEE 1890
>1w41_A 50S ribosomal protein L30E; electrostatic interactions,
thermostability, protein engineering; 1.7A {Thermococcus
celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A
1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Length = 101
Score = 27.4 bits (61), Expect = 2.6
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315
+I G + A L+I+A + P ++ + R GIP + +
Sbjct: 13 DTGKIVMGARKSIQYAKMGGAKLIIVARNARP-DIKEDIEYYARLSGIPVYEFEGT 67
Score = 27.4 bits (61), Expect = 3.0
Identities = 7/41 (17%), Positives = 12/41 (29%)
Query: 189 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEK 229
+I G + A L+I+A + P
Sbjct: 13 DTGKIVMGARKSIQYAKMGGAKLIIVARNARPDIKEDIEYY 53
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor,
ribonucleoprotein, structural genomics, NPPSFA; 1.90A
{Methanocaldococcus jannaschii}
Length = 110
Score = 27.1 bits (60), Expect = 4.6
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315
++ G+ + V + LV++A ++ +L + + IP +
Sbjct: 18 DTGKVILGSKRTIKFVKHGEGKLVVLAGNIPK-DLEEDVKYYAKLSNIPVYQHKIT 72
Score = 27.1 bits (60), Expect = 4.7
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 189 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEK 229
++ G+ + V + LV++A ++
Sbjct: 18 DTGKVILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYY 58
>1tc5_A Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534AAA;
SGPP, structural genomics, PSI; 1.93A {Leishmania major}
SCOP: c.110.1.1
Length = 194
Score = 27.6 bits (61), Expect = 4.6
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 139 QFTQAVDKQTASQLF-KFLEKYRPE--SWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQ 195
QF Q V K + L+ +F R E++ A + A K + K +++
Sbjct: 112 QFHQLVAKDVGAALYDRFCHFVRVARGVDESRVDANGAPRSEGDAPKAEGWIKYNSRVIS 171
Query: 196 GT 197
GT
Sbjct: 172 GT 173
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 28.3 bits (63), Expect = 4.7
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 144 VDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPTKKPNQIKQGT-NTVTR 202
+ +++ L+ + E +R K KI K + I T T
Sbjct: 239 AQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTG 298
Query: 203 LVVKKKASLVIIAHDVDPIELFKFLEKYR 231
V+K+ I F L+ Y
Sbjct: 299 FVIKRVYKDDTINIKKLIEIGFNLLKNYG 327
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 27.6 bits (62), Expect = 6.1
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 277 KKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKANLAKLIESV 327
+K + + DV I+ V ++ P CI +S L ++ V
Sbjct: 74 SEKLLDMRLERDVKIIDGVK---FALSRLTTPRCICSNSSSHRLDMMLTKV 121
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin
regulator, DNA-BIN metal-binding, nucleus, repressor,
transcription; HET: MLZ SUC; 2.80A {Drosophila
melanogaster}
Length = 447
Score = 27.7 bits (61), Expect = 6.8
Identities = 11/57 (19%), Positives = 14/57 (24%), Gaps = 6/57 (10%)
Query: 96 KQTGQDIQ-PKRDLSRFVKWPKYIRIQRQKAVLQKRLKVPPPVHQFT-----QAVDK 146
+ P SR W Y+ A Q P H F + D
Sbjct: 332 SVNNISVTPPNGYDSRTFTWEGYLSDTGAVAAGQHLFHDIIPDHGFEVGMSLECADL 388
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,512,752
Number of extensions: 330972
Number of successful extensions: 1052
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1012
Number of HSP's successfully gapped: 109
Length of query: 370
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 275
Effective length of database: 4,049,298
Effective search space: 1113556950
Effective search space used: 1113556950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.6 bits)