RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6066
(370 letters)
>d1xbia1 d.79.3.1 (A:2-116) Ribosomal protein L7ae {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 62.2 bits (151), Expect = 7e-13
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 248 KKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGI 307
++I K+ K +IK+G N VT+ V + A LVIIA DV P E+V LP LC + GI
Sbjct: 10 EEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGI 69
Query: 308 PYCIVDSSDK 317
PY V S
Sbjct: 70 PYAYVASKQD 79
Score = 42.2 bits (99), Expect = 9e-06
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 177 KKIAKKEDTPTKKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKY 230
++I K+ K +IK+G N VT+ V + A LVIIA DV P E+ L
Sbjct: 10 EEIQKELLDAVAKAQKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYL 63
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 113
Score = 60.2 bits (146), Expect = 4e-12
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDK 317
++ ++K+GTN T+ V + A LV IA DVDP E+V LP LC + +PY V S +
Sbjct: 17 RESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKND 75
Score = 40.6 bits (95), Expect = 4e-05
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKY 230
++ ++K+GTN T+ V + A LV IA DVDP E+ L
Sbjct: 17 RESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLL 59
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 57.5 bits (139), Expect = 4e-11
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 19/102 (18%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKA 318
++ +IK+GTN T+ V + A LV+IA DVDP E+V+ LP LC + IPY V S K
Sbjct: 24 RETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPS--KK 81
Query: 319 NLAKLI-----------------ESVKVNFTDRYDEIRRQWG 343
L + E++ ++ E+R + G
Sbjct: 82 RLGEAAGIEVAAASVAIIEPGDAETLVREIVEKVKELRAKAG 123
Score = 42.1 bits (99), Expect = 1e-05
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPE 233
++ +IK+GTN T+ V + A LV+IA DVDP E+ L E
Sbjct: 24 RETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDE 69
>d2ozba1 d.79.3.1 (A:4-128) Spliceosomal 15.5kd protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 56.5 bits (136), Expect = 1e-10
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315
Q+++G N T+ + + + +++A D +P+E++L LP LC +PY V S
Sbjct: 27 CNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSK 83
Score = 39.9 bits (93), Expect = 6e-05
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYR 231
Q+++G N T+ + + + +++A D +P+E+ L
Sbjct: 27 CNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLC 70
>d2alea1 d.79.3.1 (A:1-126) Small nuclear
ribonucleoprotein-associated protein 1, Snu13p
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 126
Score = 56.4 bits (136), Expect = 1e-10
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDK 317
Q+K+G N T+ + + + +I+A D +PIE++L LP LC +PY V S
Sbjct: 28 ANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVA 86
Score = 40.3 bits (94), Expect = 4e-05
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYR 231
Q+K+G N T+ + + + +I+A D +PIE+ L
Sbjct: 28 ANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLC 71
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 56.0 bits (135), Expect = 1e-10
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDK 317
+ +K+GTN T+ + + A LV +A DV P E+V+ +P L + G+P+ V+ D
Sbjct: 24 RDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDD 82
Score = 42.2 bits (99), Expect = 9e-06
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPE 233
+ +K+GTN T+ + + A LV +A DV P E+ + + E
Sbjct: 24 RDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADE 69
>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium
parvum [TaxId: 5807]}
Length = 115
Score = 51.8 bits (124), Expect = 3e-09
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSS 315
Q+++G N T+ + + A +V++A D +P+E++L LP +C PY V S
Sbjct: 20 CNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSK 76
Score = 38.0 bits (88), Expect = 2e-04
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEKYRPE 233
Q+++G N T+ + + A +V++A D +P+E+ L +
Sbjct: 20 CNYKQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCED 65
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 98
Score = 45.9 bits (109), Expect = 3e-07
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 260 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKAN 319
+I G + A L+I+A + P ++ + R GI + +
Sbjct: 12 DTGKIVMGARKSIQYAKMGGAKLIIVARNARP-DIKEDIEYYARLSGIAVYEFEGT-SVE 69
Query: 320 LAKLI 324
L L+
Sbjct: 70 LGTLL 74
Score = 29.7 bits (67), Expect = 0.13
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 189 KPNQIKQGTNTVTRLVVKKKASLVIIAHDVDP 220
+I G + A L+I+A + P
Sbjct: 12 DTGKIVMGARKSIQYAKMGGAKLIIVARNARP 43
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e)
{Archaeon Thermococcus celer [TaxId: 2264]}
Length = 100
Score = 39.7 bits (93), Expect = 5e-05
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVD 313
+ G + + + L+IIA + P + L R G P +
Sbjct: 11 IDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRP-DRKEDLEYYARLSGTPVYEFE 64
Score = 28.6 bits (64), Expect = 0.35
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDP 220
+ G + + + L+IIA + P
Sbjct: 11 IDSGKYTLGYRKTVQSLKMGGSKLIIIARNTRP 43
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 39.4 bits (92), Expect = 5e-05
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 259 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELVLFLPALCRKMGIPYCIVDSSDKA 318
K + G + + + + K+ L+IIA + L
Sbjct: 10 IKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPV-LRKSELEYYAMLSKTKVYYFQGG-NN 67
Query: 319 NLAKLI 324
L +
Sbjct: 68 ELGTAV 73
Score = 28.6 bits (64), Expect = 0.38
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 188 KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDPIELFKFLEK 229
K + G + + + + K+ L+IIA + + +
Sbjct: 10 IKSGKYTLGYKSTVKSLRQGKSKLIIIAANTPVLRKSELEYY 51
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 27.1 bits (59), Expect = 2.8
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 212 VIIAHDVDPIELFKFLEKYRPESWEAKKQRLKARAE 247
+ D DP+ + L +Y + +EA ++ +
Sbjct: 223 IWFYGDDDPVHRLRVLSEYL-DMFEASPSPNSSKIK 257
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId:
274]}
Length = 145
Score = 25.8 bits (57), Expect = 6.3
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 175 AEKKIAKKEDTPT----KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDP 220
E A ED KK + +++ + V + L+IIA DV+
Sbjct: 17 PETMEAVLEDAFILIVEKKVSNVRELLP-ILEQVAQTGKPLLIIAEDVEG 65
Score = 25.8 bits (57), Expect = 6.3
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 246 AEKKIAKKEDTPT----KKPNQIKQGTNTVTRLVVKKKASLVIIAHDVDP 291
E A ED KK + +++ + V + L+IIA DV+
Sbjct: 17 PETMEAVLEDAFILIVEKKVSNVRELLP-ILEQVAQTGKPLLIIAEDVEG 65
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase
(SLT70), superhelical domain {Escherichia coli [TaxId:
562]}
Length = 450
Score = 26.0 bits (56), Expect = 8.0
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 138 HQFTQAVDKQTASQLFKFLEKYRPESWEAKKQRLKARAEKKIAKKEDTPT 187
Q T + Q A + F+ P A+ L++R ++A++ED
Sbjct: 44 RQITDDLMNQPAVTVTNFVRAN-PTLPPAR--TLQSRFVNELARREDWRG 90
>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus
influenzae [TaxId: 727]}
Length = 236
Score = 25.7 bits (55), Expect = 9.4
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 301 LCRKMGIPYCIVDSSDKANLAKLIESVKV 329
L R G+P + + L +++ +
Sbjct: 203 LARDHGMPIRVFNMGKPGALRQVVTGTEE 231
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.375
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,350,835
Number of extensions: 65323
Number of successful extensions: 253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 40
Length of query: 370
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,213,086
Effective search space: 343303338
Effective search space used: 343303338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)