Query psy6067
Match_columns 584
No_of_seqs 189 out of 2130
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:47:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 7.5E-68 1.6E-72 584.7 53.8 536 3-578 3-557 (557)
2 PRK15049 L-asparagine permease 100.0 8.1E-55 1.8E-59 476.5 45.3 379 29-432 23-408 (499)
3 PRK11387 S-methylmethionine tr 100.0 1.5E-54 3.3E-59 472.7 45.1 437 30-577 10-461 (471)
4 PRK10746 putative transport pr 100.0 7.6E-54 1.6E-58 465.0 44.8 437 29-582 5-458 (461)
5 PRK11357 frlA putative fructos 100.0 1.5E-53 3.3E-58 462.0 44.2 429 29-577 3-440 (445)
6 PRK10249 phenylalanine transpo 100.0 1.5E-53 3.3E-58 462.7 43.3 384 19-431 6-396 (458)
7 COG0833 LysP Amino acid transp 100.0 5.6E-54 1.2E-58 449.6 37.1 435 31-576 41-501 (541)
8 PRK10655 potE putrescine trans 100.0 5.6E-53 1.2E-57 456.8 42.6 423 32-581 4-437 (438)
9 PRK10580 proY putative proline 100.0 1.1E-52 2.5E-57 456.4 45.2 437 29-580 4-454 (457)
10 TIGR00908 2A0305 ethanolamine 100.0 1.3E-52 2.8E-57 454.5 44.8 428 29-578 2-436 (442)
11 TIGR00909 2A0306 amino acid tr 100.0 2.9E-52 6.4E-57 450.1 47.0 426 32-571 1-429 (429)
12 PRK10238 aromatic amino acid t 100.0 1.5E-52 3.2E-57 454.8 44.6 377 27-432 5-388 (456)
13 PRK10836 lysine transporter; P 100.0 2E-52 4.3E-57 457.9 44.1 413 27-552 8-438 (489)
14 PRK11049 D-alanine/D-serine/gl 100.0 3.6E-52 7.8E-57 453.6 44.2 379 27-433 13-402 (469)
15 PRK10644 arginine:agmatin anti 100.0 8.7E-52 1.9E-56 448.1 44.8 421 30-576 4-433 (445)
16 TIGR01773 GABAperm gamma-amino 100.0 1.1E-51 2.3E-56 448.4 43.7 376 29-432 7-390 (452)
17 COG1113 AnsP Gamma-aminobutyra 100.0 5.2E-52 1.1E-56 426.6 34.7 438 26-578 5-456 (462)
18 TIGR00913 2A0310 amino acid pe 100.0 6.6E-51 1.4E-55 445.4 43.7 432 33-575 1-464 (478)
19 PRK10435 cadB lysine/cadaverin 100.0 9.3E-51 2E-55 438.5 42.3 363 31-428 2-377 (435)
20 TIGR00905 2A0302 transporter, 100.0 3.5E-50 7.6E-55 438.5 44.3 427 32-576 5-440 (473)
21 PRK10197 gamma-aminobutyrate t 100.0 4.7E-50 1E-54 434.1 42.0 360 44-431 2-369 (446)
22 KOG1286|consensus 100.0 9E-51 1.9E-55 440.4 32.2 388 27-432 23-425 (554)
23 KOG1287|consensus 100.0 2.4E-50 5.2E-55 421.2 32.7 428 26-575 4-443 (479)
24 TIGR00911 2A0308 L-type amino 100.0 2.4E-49 5.3E-54 435.1 42.4 377 27-432 35-417 (501)
25 PRK11021 putative transporter; 100.0 1.1E-48 2.5E-53 419.5 45.0 356 36-430 1-362 (410)
26 TIGR03810 arg_ornith_anti argi 100.0 3.3E-48 7.1E-53 422.5 44.7 424 34-574 1-433 (468)
27 TIGR00930 2a30 K-Cl cotranspor 100.0 1.4E-48 3.1E-53 449.0 41.3 442 31-578 73-543 (953)
28 TIGR00907 2A0304 amino acid pe 100.0 6.5E-46 1.4E-50 406.3 43.0 387 26-429 4-408 (482)
29 TIGR03428 ureacarb_perm permea 100.0 4.1E-45 8.9E-50 398.9 45.5 386 26-431 5-403 (475)
30 TIGR03813 put_Glu_GABA_T putat 100.0 1.8E-42 3.8E-47 378.2 43.9 371 34-432 1-387 (474)
31 COG0531 PotE Amino acid transp 100.0 3.5E-42 7.5E-47 375.3 45.2 379 26-432 4-391 (466)
32 TIGR00910 2A0307_GadC glutamat 100.0 1E-41 2.2E-46 373.7 44.2 369 33-432 3-390 (507)
33 PF00324 AA_permease: Amino ac 100.0 1.1E-45 2.3E-50 404.2 11.9 371 41-432 2-394 (478)
34 PF13520 AA_permease_2: Amino 100.0 1.2E-42 2.6E-47 374.9 34.8 366 36-433 1-378 (426)
35 KOG1289|consensus 100.0 2.6E-42 5.7E-47 360.9 31.6 385 26-430 40-444 (550)
36 PRK15238 inner membrane transp 100.0 2.1E-40 4.5E-45 363.6 41.3 380 32-430 5-422 (496)
37 KOG2082|consensus 100.0 3.5E-33 7.7E-38 295.0 28.0 443 32-577 110-650 (1075)
38 TIGR00837 araaP aromatic amino 100.0 5.4E-29 1.2E-33 264.7 28.8 344 42-429 3-355 (381)
39 KOG1288|consensus 100.0 7.5E-27 1.6E-31 245.8 28.0 382 35-431 66-472 (945)
40 KOG2083|consensus 99.9 9.3E-25 2E-29 229.1 22.0 426 33-576 27-470 (643)
41 TIGR00912 2A0309 spore germina 99.9 4.8E-21 1E-25 202.1 34.8 287 35-362 2-295 (359)
42 PHA02764 hypothetical protein; 99.9 1.6E-20 3.5E-25 183.3 25.7 326 24-430 2-332 (399)
43 TIGR00796 livcs branched-chain 99.8 1.7E-17 3.7E-22 173.5 33.9 334 45-432 4-356 (378)
44 PF03222 Trp_Tyr_perm: Tryptop 99.8 8E-17 1.7E-21 170.9 37.3 354 34-431 1-366 (394)
45 PRK10483 tryptophan permease; 99.8 4E-16 8.6E-21 164.4 32.5 354 31-428 6-371 (414)
46 PRK09664 tryptophan permease T 99.8 1.2E-15 2.5E-20 160.7 33.3 351 37-428 10-372 (415)
47 TIGR00814 stp serine transport 99.8 4.1E-16 8.8E-21 165.2 29.5 352 42-431 9-380 (397)
48 PRK15132 tyrosine transporter 99.7 4.9E-15 1.1E-19 156.8 34.5 347 37-430 4-362 (403)
49 COG0814 SdaC Amino acid permea 99.6 2.2E-12 4.7E-17 138.0 35.1 359 31-431 4-377 (415)
50 PF03845 Spore_permease: Spore 99.6 5.2E-13 1.1E-17 138.6 28.8 287 35-363 1-292 (320)
51 PRK13629 threonine/serine tran 99.6 3.9E-12 8.5E-17 134.3 33.4 358 43-429 26-414 (443)
52 PF01235 Na_Ala_symp: Sodium:a 99.3 3.8E-10 8.1E-15 118.8 25.7 351 33-430 16-391 (416)
53 COG1115 AlsT Na+/alanine sympo 99.2 6.8E-09 1.5E-13 108.2 28.2 353 31-430 58-435 (452)
54 TIGR00835 agcS amino acid carr 99.2 8.3E-09 1.8E-13 109.3 28.2 347 34-430 45-417 (425)
55 PF13906 AA_permease_C: C-term 99.1 1.3E-10 2.8E-15 84.8 5.5 51 526-576 1-51 (51)
56 PRK11375 allantoin permease; P 99.1 4.2E-06 9E-11 91.7 40.5 339 26-400 17-365 (484)
57 KOG1303|consensus 99.0 1.5E-07 3.2E-12 100.6 26.1 355 28-427 30-398 (437)
58 COG3949 Uncharacterized membra 98.9 1.2E-06 2.5E-11 88.0 27.9 266 43-354 10-280 (349)
59 COG1457 CodB Purine-cytosine p 98.9 1.2E-05 2.6E-10 85.4 36.6 239 70-360 54-298 (442)
60 PTZ00206 amino acid transporte 98.9 3.6E-06 7.9E-11 91.9 32.2 255 39-312 63-319 (467)
61 PLN03074 auxin influx permease 98.9 5.1E-06 1.1E-10 90.6 32.7 238 34-312 44-294 (473)
62 KOG1304|consensus 98.9 2.2E-06 4.8E-11 90.6 27.7 345 33-430 44-412 (449)
63 PF01490 Aa_trans: Transmembra 98.7 3.8E-09 8.3E-14 113.3 2.4 361 34-432 1-376 (409)
64 COG1953 FUI1 Cytosine/uracil/t 98.7 0.00045 9.7E-09 73.8 38.4 381 18-432 23-417 (497)
65 PRK11017 codB cytosine permeas 98.7 0.00024 5.2E-09 76.3 36.3 155 33-214 8-162 (404)
66 TIGR00800 ncs1 NCS1 nucleoside 98.5 0.0007 1.5E-08 73.6 36.3 249 31-306 9-263 (442)
67 PRK09442 panF sodium/panthothe 98.5 0.00034 7.4E-09 76.9 32.3 298 33-365 40-350 (483)
68 TIGR02119 panF sodium/pantothe 98.4 0.00045 9.8E-09 75.8 31.8 301 33-365 39-349 (471)
69 TIGR00813 sss transporter, SSS 98.3 0.00056 1.2E-08 73.5 29.4 300 33-359 2-322 (407)
70 PF05525 Branch_AA_trans: Bran 98.2 0.0026 5.5E-08 68.0 29.6 322 45-417 12-345 (427)
71 COG0591 PutP Na+/proline sympo 98.0 0.0049 1.1E-07 67.9 29.1 110 32-152 36-152 (493)
72 TIGR02358 thia_cytX probable h 98.0 0.032 6.9E-07 59.6 36.9 246 69-363 30-276 (386)
73 PRK12488 acetate permease; Pro 98.0 0.019 4E-07 64.3 32.8 158 33-216 66-225 (549)
74 PF00474 SSF: Sodium:solute sy 98.0 0.00017 3.8E-09 77.4 15.9 301 33-365 5-323 (406)
75 TIGR02711 symport_actP cation/ 98.0 0.027 5.8E-07 63.0 33.5 154 33-212 66-221 (549)
76 PRK00701 manganese transport p 98.0 0.04 8.6E-07 59.7 33.6 91 50-152 48-140 (439)
77 PRK09395 actP acetate permease 97.9 0.043 9.4E-07 61.4 33.8 152 33-212 68-223 (551)
78 PF01566 Nramp: Natural resist 97.9 0.0078 1.7E-07 63.5 26.3 260 66-364 11-286 (358)
79 TIGR02121 Na_Pro_sym sodium/pr 97.9 0.032 6.9E-07 61.5 31.5 296 33-358 35-345 (487)
80 COG1914 MntH Mn2+ and Fe2+ tra 97.8 0.065 1.4E-06 57.2 32.8 110 31-152 12-123 (416)
81 PRK15419 proline:sodium sympor 97.8 0.085 1.8E-06 58.4 36.1 155 33-212 39-201 (502)
82 COG0733 Na+-dependent transpor 97.8 0.044 9.6E-07 58.2 30.1 289 39-354 12-326 (439)
83 PRK15433 branched-chain amino 97.8 0.016 3.6E-07 61.9 26.1 280 45-361 17-308 (439)
84 PF02028 BCCT: BCCT family tra 97.7 0.041 8.8E-07 60.1 28.7 363 33-430 72-484 (485)
85 PRK10484 putative transporter; 97.7 0.16 3.4E-06 56.6 37.0 306 33-358 37-354 (523)
86 COG1114 BrnQ Branched-chain am 97.7 0.11 2.4E-06 54.6 32.7 285 41-359 10-304 (431)
87 KOG1305|consensus 97.6 0.02 4.4E-07 61.2 24.5 250 33-313 3-258 (411)
88 TIGR03648 Na_symport_lg probab 97.6 0.18 3.9E-06 56.5 33.1 148 33-208 31-182 (552)
89 PF02133 Transp_cyt_pur: Perme 97.3 0.008 1.7E-07 65.3 17.0 172 32-214 5-179 (440)
90 PF02705 K_trans: K+ potassium 97.2 0.055 1.2E-06 59.2 21.7 234 171-425 131-372 (534)
91 PRK09950 putative transporter; 97.1 0.51 1.1E-05 51.8 27.6 95 332-431 400-499 (506)
92 PRK09928 choline transport pro 96.6 1.2 2.5E-05 50.4 25.7 96 332-431 407-505 (679)
93 COG4147 DhlC Predicted symport 96.4 1.7 3.6E-05 46.7 24.2 299 70-400 79-411 (529)
94 COG1292 BetT Choline-glycine b 96.4 1.1 2.3E-05 49.0 23.1 107 319-432 390-499 (537)
95 PRK03356 L-carnitine/gamma-but 96.3 2.3 5.1E-05 46.7 26.8 94 332-430 403-500 (504)
96 PLN00150 potassium ion transpo 96.3 0.46 9.9E-06 54.1 20.5 228 172-420 214-450 (779)
97 PLN00149 potassium transporter 96.2 0.21 4.5E-06 56.9 17.5 230 173-420 199-437 (779)
98 TIGR00794 kup potassium uptake 96.2 0.15 3.3E-06 57.3 16.1 235 172-424 168-408 (688)
99 PLN00148 potassium transporter 95.9 0.19 4.2E-06 57.0 15.2 230 172-419 197-432 (785)
100 PLN00151 potassium transporter 95.8 0.21 4.4E-06 56.9 15.0 231 172-420 274-510 (852)
101 COG4145 PanF Na+/panthothenate 95.6 3.3 7.2E-05 43.0 22.6 218 109-358 117-344 (473)
102 PF00209 SNF: Sodium:neurotran 95.5 1.9 4.2E-05 47.9 21.7 102 251-353 250-368 (523)
103 PRK10745 trkD potassium transp 95.3 1.3 2.8E-05 49.4 18.5 234 171-424 142-382 (622)
104 TIGR00842 bcct choline/carniti 94.6 8.3 0.00018 41.9 25.3 93 332-428 354-450 (453)
105 KOG2466|consensus 91.9 21 0.00046 38.6 21.5 314 27-373 47-380 (572)
106 COG3158 Kup K+ transporter [In 91.3 8.4 0.00018 42.3 16.0 235 169-424 145-387 (627)
107 TIGR01197 nramp NRAMP (natural 88.2 40 0.00087 36.0 34.8 43 320-362 282-324 (390)
108 PF02554 CstA: Carbon starvati 83.7 62 0.0013 34.1 22.2 58 255-313 292-352 (376)
109 KOG4303|consensus 82.9 7.4 0.00016 40.1 9.0 357 31-436 112-488 (524)
110 PTZ00206 amino acid transporte 80.1 91 0.002 34.1 17.3 57 317-373 120-176 (467)
111 KOG3660|consensus 78.5 1.3E+02 0.0028 34.3 32.2 59 37-95 39-101 (629)
112 COG4146 Predicted symporter [G 53.0 3.1E+02 0.0066 29.1 24.3 279 67-362 71-358 (571)
113 PF05915 DUF872: Eukaryotic pr 41.1 1E+02 0.0022 26.8 6.6 28 70-97 76-103 (115)
114 KOG1289|consensus 38.8 6E+02 0.013 28.4 14.2 138 70-214 293-436 (550)
115 KOG1286|consensus 37.8 72 0.0016 35.8 6.4 48 530-577 503-553 (554)
116 COG1575 MenA 1,4-dihydroxy-2-n 34.1 1.6E+02 0.0035 30.2 7.6 74 33-122 89-163 (303)
117 PF12270 Cyt_c_ox_IV: Cytochro 33.4 3.6E+02 0.0078 24.2 11.4 23 521-543 78-100 (137)
118 PF01102 Glycophorin_A: Glycop 31.9 96 0.0021 27.3 4.9 20 378-397 60-79 (122)
119 COG3949 Uncharacterized membra 31.7 6.2E+02 0.013 26.4 18.5 105 288-411 39-144 (349)
120 COG2271 UhpC Sugar phosphate p 29.7 6.4E+02 0.014 27.4 11.5 28 344-371 68-95 (448)
121 TIGR00366 conserved hypothetic 29.5 7.6E+02 0.017 26.8 15.1 97 280-400 11-109 (438)
122 KOG2349|consensus 27.5 5.4E+02 0.012 29.1 10.9 47 99-152 108-154 (585)
123 PF09991 DUF2232: Predicted me 26.4 6.4E+02 0.014 25.0 16.0 98 331-432 156-258 (290)
124 PRK00968 tetrahydromethanopter 25.7 88 0.0019 30.1 3.8 34 272-305 203-237 (240)
125 COG3086 RseC Positive regulato 25.0 88 0.0019 28.2 3.5 45 531-575 81-126 (150)
126 PF11045 YbjM: Putative inner 24.9 2.9E+02 0.0064 24.3 6.6 21 497-517 7-27 (125)
127 COG0109 CyoE Polyprenyltransfe 23.5 8.2E+02 0.018 25.2 12.8 63 360-422 71-140 (304)
128 PF11998 DUF3493: Protein of u 22.5 2.7E+02 0.006 22.2 5.5 39 270-308 7-45 (75)
129 PRK13387 1,4-dihydroxy-2-napht 22.2 5.1E+02 0.011 26.8 9.1 35 78-121 120-155 (317)
130 PF05525 Branch_AA_trans: Bran 22.1 1E+03 0.022 25.8 15.0 76 104-202 266-341 (427)
131 TIGR00751 menA 1,4-dihydroxy-2 22.1 4.4E+02 0.0096 26.7 8.5 38 74-120 111-149 (284)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=7.5e-68 Score=584.74 Aligned_cols=536 Identities=43% Similarity=0.775 Sum_probs=434.4
Q ss_pred hHhHHhhhcccccCCCcccccCCCCCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHH
Q psy6067 3 LSNFLDALSRKKSSYSEDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASA 82 (584)
Q Consensus 3 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l 82 (584)
.+++.+++.|||+.+. +++++++++|+++.+|++++++|.++|+|+|+.++.++...+||..+++|+++++.++
T Consensus 3 ~~~~~~~~~r~k~~~~------~~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l 76 (557)
T TIGR00906 3 VLTFARCLIRRKIVDL------DSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAV 76 (557)
T ss_pred hHHHHHHHhccCCccc------ccccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHH
Confidence 5678899999998832 1223457999999999999999999999999999987766799999999999999999
Q ss_pred HHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccc
Q psy6067 83 LSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTT 162 (584)
Q Consensus 83 ~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (584)
+.+++|+|+++++|++||.|.|+++.+|+.+||++||.+++.|....+. .+.+.++|+..+++ ....++..+
T Consensus 77 ~~al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~-------va~~~s~yl~~ll~-~~~~~~~~~ 148 (557)
T TIGR00906 77 LSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAA-------VARSWSAYFDELLN-KQIGQFRRT 148 (557)
T ss_pred HHHHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-hhccccccc
Confidence 9999999999999999999999999999999999999999999999999 89999999888775 211111110
Q ss_pred ---cCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccC
Q psy6067 163 ---DRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHG 239 (584)
Q Consensus 163 ---~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (584)
.+.+....+...++++++++.+.+|.+|+|..++++++++.++++.++++++.++.+.+.++|..... .
T Consensus 149 ~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~--------~ 220 (557)
T TIGR00906 149 YFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEE--------K 220 (557)
T ss_pred cccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhcccccc--------c
Confidence 01111122345677778888899999999999999999999999999998888887766666542111 1
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCc
Q psy6067 240 GTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAP 319 (584)
Q Consensus 240 ~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p 319 (584)
+.+++.|.|+.+++.++..++|+|.|||.+++++||+|||+||+||+++.++++++++|++..+++....|+++.+.++|
T Consensus 221 ~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p 300 (557)
T TIGR00906 221 GAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAP 300 (557)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcH
Confidence 23356788888999999999999999999999999999999999999999999999999999999999999988887889
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHH
Q psy6067 320 FPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAV 399 (584)
Q Consensus 320 ~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~ 399 (584)
+..+++..+.++...++.++++.+.+++.++.+++.+|++++|||||.+|++|+|+|||+++|++++++.++++.++.++
T Consensus 301 ~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~ 380 (557)
T TIGR00906 301 FPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFL 380 (557)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCc
Q psy6067 400 FKLDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQS 479 (584)
Q Consensus 400 ~~~~~l~~~~s~~~l~~y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (584)
.+++.+.++.+++.++.|.+.+++++++|++++...+. +. .+.+|+++ . ..|+.+.-++++.
T Consensus 381 ~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~-~~-~~~~~~~~---------------~-~~~~~~~~~~~~~ 442 (557)
T TIGR00906 381 FDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQ-AK-DTDEKDTL---------------D-SWVPFTSKSESQS 442 (557)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-cc-cccccccc---------------c-ccccccccccccc
Confidence 89999999999999999999999999999887543322 10 01111100 0 0011111111111
Q ss_pred ccccc-----ccccccchh----hh----H---HHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHH
Q psy6067 480 ALTGG-----PVPTSDCTS----AL----Q---YATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNI 543 (584)
Q Consensus 480 ~~~~~-----~~~~~~~~~----~~----~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (584)
.+..- .+.+..|.. .. + .....+..++.+..+...+||||.+.+++||+|++|++|+++++.|+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~ 522 (557)
T TIGR00906 443 EGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINI 522 (557)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHH
Confidence 10000 000000110 00 0 11233334444566677788998877899999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy6067 544 YLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQ 578 (584)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 578 (584)
|+|.+++..+|.++.+|+++|.++|+.|++||+|+
T Consensus 523 ~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 523 FLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 99999999999999999999999999999999874
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=8.1e-55 Score=476.51 Aligned_cols=379 Identities=20% Similarity=0.327 Sum_probs=318.3
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHH
Q psy6067 29 REKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLS 108 (584)
Q Consensus 29 ~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~ 108 (584)
++++||+++.+|+.++++|+++|+|+|..++... ..+||..+++|+++++++++.+++++||++++|++||.|.|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~-~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARL-QMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3459999999999999999999999999999866 788998899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
+||.+||++||.+|++|....+. .....+.+...+ + .. ...+.+.+..+++++.+.+|+
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~-------~~~a~~~~~~~~-~---------~~----~~~~~~~~~~~~~~l~~~iN~ 160 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIV-------DITAVALYMHYW-G---------AF----GGVPQWVFALAALTIVGTMNM 160 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh-c---------cC----CCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776555 554455554432 1 00 012345667788888999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDC 268 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~ 268 (584)
+|+|..++++.+++.+|++.++++++.++......+........+... .+++++.|+|+.+++.++..++|+|.|+|.
T Consensus 161 ~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~--~~~~~~~p~g~~~~~~~~~~~~faf~G~e~ 238 (499)
T PRK15049 161 IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLI--TDNGGFFPHGLLPALVLIQGVVFAFASIEM 238 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccc--cCCCCcccccHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999888887776654321111100000001111 123446677888888888899999999999
Q ss_pred hhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q psy6067 269 IATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTA 347 (584)
Q Consensus 269 ~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s 347 (584)
+++++||+|||+||+||++..++..+.++|++..+++...+|+++.. +++|+.++++..+.++...+++++.+++.+++
T Consensus 239 i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss 318 (499)
T PRK15049 239 VGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSS 318 (499)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988774 45799999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHHHH
Q psy6067 348 MFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSIGTLLAYTIVA 421 (584)
Q Consensus 348 ~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~~~l~~y~l~~ 421 (584)
.++.+++.||++++|||||.+|++|+|+| |+++|++|++++.+++.+..++. .++.+.++.++..++.|++++
T Consensus 319 ~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~ 397 (499)
T PRK15049 319 LNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFII 397 (499)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 88999999999988866543322 388899999999999999999
Q ss_pred HHHHHHhhccC
Q psy6067 422 LSVLILRYSED 432 (584)
Q Consensus 422 la~i~~r~~~~ 432 (584)
++.+++|++.+
T Consensus 398 ~~~l~~R~~~~ 408 (499)
T PRK15049 398 VCQMRLRKAIK 408 (499)
T ss_pred HHHHHHHHhhh
Confidence 99999987653
No 3
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=1.5e-54 Score=472.67 Aligned_cols=437 Identities=18% Similarity=0.286 Sum_probs=353.9
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHH
Q psy6067 30 EKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGP-SVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLS 108 (584)
Q Consensus 30 ~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~ 108 (584)
+++||+++.++++++++|+++|+|+|..++... ..+|| +.+++|+++++++++.+++++||++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~-~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYII-STTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 469999999999999999999999999999976 66887 5899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
+||.+||.+||.+|+++....+. .....+.+++.+++ ..+.+...++++++++.+|+
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~-------~~~~~~~~~~~~~p----------------~~~~~~~~~~~~~~~~~in~ 145 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGS-------SLTAAGFCMQYWFP----------------QVPVWPWCLLFCALIFGLNV 145 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccC----------------cCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877 65555555544333 11223445556677889999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-CCc-ccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNP-RNW-AIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGF 266 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~ 266 (584)
+|+|..++++.+++..|++.++++++.++..... ... ...+...+++. +..++.|++..+++.++..++|+|.|+
T Consensus 146 ~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~faf~G~ 222 (471)
T PRK11387 146 VSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNL---TAEGWFPHGGLPILMTMVAVNFAFSGT 222 (471)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccccc---CCCCCCcccHHHHHHHHHHHHHHHcCH
Confidence 9999999999999999999888777766532100 000 00000011111 122355666677888889999999999
Q ss_pred hhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHH
Q psy6067 267 DCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALL 345 (584)
Q Consensus 267 e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~ 345 (584)
|.+++++||+|||+||+||+++.++.++.++|++..+++....|.++.. +++|+.+++++.++++...++++.++++.+
T Consensus 223 e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~ 302 (471)
T PRK11387 223 ELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAIL 302 (471)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987764 467999999999999999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHH
Q psy6067 346 TAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSIGTLLAYTI 419 (584)
Q Consensus 346 ~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~~~l~~y~l 419 (584)
++.++++++.||++++|||||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++.+...++.|++
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~ 381 (471)
T PRK11387 303 SAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLS 381 (471)
T ss_pred HHHHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 78999999998876655443322 2566888999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHH
Q psy6067 420 VALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYAT 499 (584)
Q Consensus 420 ~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (584)
.+++++++|+++++.
T Consensus 382 ~~~~~i~lr~~~~~~----------------------------------------------------------------- 396 (471)
T PRK11387 382 ICASHFMFRRRHLRD----------------------------------------------------------------- 396 (471)
T ss_pred HHHHHHHHHHHHHhc-----------------------------------------------------------------
Confidence 999999999887531
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHHHHHHHhhhccc
Q psy6067 500 FTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTW-----VRFVIWLVIGFGIYFTYGIS 574 (584)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~y~~~~~~ 574 (584)
+.+..+||||.|+.|+.++++++.+++++........ .....++++++..|..++++
T Consensus 397 ------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 397 ------------------GKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred ------------------CCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1113468999999999999999999888765433322 23555667777778777665
Q ss_pred ccc
Q psy6067 575 HSK 577 (584)
Q Consensus 575 ~~~ 577 (584)
+++
T Consensus 459 ~~~ 461 (471)
T PRK11387 459 KRN 461 (471)
T ss_pred ccc
Confidence 544
No 4
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=7.6e-54 Score=465.01 Aligned_cols=437 Identities=21% Similarity=0.276 Sum_probs=363.3
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHH
Q psy6067 29 REKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLS 108 (584)
Q Consensus 29 ~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~ 108 (584)
++++||+++.+|..++++|+++|+|+|..++... ..+||+.+++|++++++.++.+++++||++++|++||.|.|++|.
T Consensus 5 ~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l-~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~ 83 (461)
T PRK10746 5 KPELQRGLEARHIELIALGGTIGVGLFMGAASTL-KWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRY 83 (461)
T ss_pred chHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3468999999999999999999999999999865 779999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
+||.+||.+||.+|+.+....+. +....+.+++.+++ ..+.+.+..+++++.+.+|+
T Consensus 84 ~g~~~Gf~~gw~~~~~~~~~~~~-------~~~a~~~~l~~~~p----------------~~~~~~~~~~~~~~~~~lN~ 140 (461)
T PRK10746 84 MSPFFGYLTAWSYWFMWMAVGIS-------EITAIGVYVQFWFP----------------EMAQWIPALIAVALVALANL 140 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHccC----------------CCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888 77778888776655 12234566677788889999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhccc---ccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVGSGLFK---MNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVG 265 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G 265 (584)
+|+|..++++..++.+|++.++.+++.++.. ...++.+ ... ++++ .+++++.++|+.++..++..+.|+|.|
T Consensus 141 ~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~--~~~-~~~~--~~~~g~~~~g~~g~~~~~~~~~faf~G 215 (461)
T PRK10746 141 AAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQ--SIG-FSNL--TEHGGFFAGGWKGFLTALCIVVASYQG 215 (461)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCc-cccc--cCCCCcCcccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999988887777666531 1111111 000 1111 122345677899999999999999999
Q ss_pred hhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-CCcHHHHHHHcChhHHHHHHHHHHHHHH
Q psy6067 266 FDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EAPFPHIFDSLGWPVMKWLVTVGSLFAL 344 (584)
Q Consensus 266 ~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-~~p~~~~~~~~~~~~~~~li~~~~~~s~ 344 (584)
+|.++..+||+|||+||+||++..++..+.++|++..+++...+|+++... ++|+.+++++.+.+....+++++.+.+.
T Consensus 216 ~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~ 295 (461)
T PRK10746 216 VELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAA 295 (461)
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988754 5799999999998888899999999999
Q ss_pred HHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHH---HHh-----CHHHHHHHHHHHHHHH
Q psy6067 345 LTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLS---AVF-----KLDQLVDMLSIGTLLA 416 (584)
Q Consensus 345 ~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~---~~~-----~~~~l~~~~s~~~l~~ 416 (584)
+++.|+.+++.||++++|||||.+|++|+|+| |+|+|++|++++.+...+.. ... .++.+.++++...++.
T Consensus 296 ~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~ 374 (461)
T PRK10746 296 LSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVP 374 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 88999999998865443321 111 2778999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhH
Q psy6067 417 YTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQ 496 (584)
Q Consensus 417 y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (584)
|++++++.+++|+++|+
T Consensus 375 w~~i~~~~i~~r~~~~~--------------------------------------------------------------- 391 (461)
T PRK10746 375 WFVILISQLRFRRAHKA--------------------------------------------------------------- 391 (461)
T ss_pred HHHHHHHHHHHHHhccc---------------------------------------------------------------
Confidence 99999999999998752
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHhhh
Q psy6067 497 YATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLD-----ISTWVRFVIWLVIGFGIYFTY 571 (584)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~y~~~ 571 (584)
+++++|||.|++|+.++++++.++.++.... ..+......++++..+.|+.|
T Consensus 392 -----------------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 448 (461)
T PRK10746 392 -----------------------AIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVF 448 (461)
T ss_pred -----------------------cccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345789999999999999988887754432 134555667777788888887
Q ss_pred ccccccccccc
Q psy6067 572 GISHSKQKLTK 582 (584)
Q Consensus 572 ~~~~~~~~~~~ 582 (584)
++.+ |+|.||
T Consensus 449 ~~~~-~~~~~~ 458 (461)
T PRK10746 449 GLNR-HGKAHK 458 (461)
T ss_pred Hhhh-hcchhh
Confidence 6644 444444
No 5
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=1.5e-53 Score=461.97 Aligned_cols=429 Identities=23% Similarity=0.374 Sum_probs=354.7
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHH
Q psy6067 29 REKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYL 107 (584)
Q Consensus 29 ~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~ 107 (584)
+++++|++++++.+++++|.++|+|+|..++.+....+++. .+++|+++++++++.+++|+||++++|++||.|.|+++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 45689999999999999999999999999998764444454 88999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHH-HHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHH
Q psy6067 108 SIGEFAAYIIGWNLEL-FIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSAL 186 (584)
Q Consensus 108 ~lG~~~g~~~g~~~~l-~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~i 186 (584)
.+||.+||..+|..++ ......+. ++...++|+....+ +.......++++++.+++.+
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~-------~a~~~~~y~~~~~~--------------~~~~~~~~~~~~~~~~~~~l 141 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSI-------MALAIVSNLGFLTP--------------IDPLLGKFIAAGLIIAFMLL 141 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC--------------CchHHHHHHHHHHHHHHHHH
Confidence 9999999999997554 44555666 77778888765544 01122345666677778899
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhh
Q psy6067 187 ISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGF 266 (584)
Q Consensus 187 n~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~ 266 (584)
|.+|+|..+++|++++.+++++++++++.++...+++++....... .+ .. ..+.+++.++..++|+|.||
T Consensus 142 n~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~------~~---~~-g~~~~~~~~~~~~~~af~G~ 211 (445)
T PRK11357 142 HLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA------IG---AT-GSFMALLAGISATSWSYTGM 211 (445)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc------cc---cc-chHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999998887777766533333332211100 00 00 11567888899999999999
Q ss_pred hhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-CCcHHHHHHHc--ChhHHHHHHHHHHHHH
Q psy6067 267 DCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EAPFPHIFDSL--GWPVMKWLVTVGSLFA 343 (584)
Q Consensus 267 e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-~~p~~~~~~~~--~~~~~~~li~~~~~~s 343 (584)
|.+++++||+|||+||+||++..++.++.++|++...+.....|.+++.+ +.|+.++++.. .+++...++.+..+++
T Consensus 212 e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~ 291 (445)
T PRK11357 212 ASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIV 291 (445)
T ss_pred HHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888887643 56888888764 4566677778888889
Q ss_pred HHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q psy6067 344 LLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALS 423 (584)
Q Consensus 344 ~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~l~~y~l~~la 423 (584)
.+++.++.+...+|++++|||||.+|++|+|+|||+++|++|++++.+++.++.+..+++.+.++.+....+.|.+...+
T Consensus 292 ~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 371 (445)
T PRK11357 292 ILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGS 371 (445)
T ss_pred HHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHHHHHH
Q psy6067 424 VLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLL 503 (584)
Q Consensus 424 ~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (584)
++++|+++
T Consensus 372 ~i~lr~~~------------------------------------------------------------------------ 379 (445)
T PRK11357 372 IIWCRKRD------------------------------------------------------------------------ 379 (445)
T ss_pred HheeecCC------------------------------------------------------------------------
Confidence 99887653
Q ss_pred HHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy6067 504 GLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMIN----LDISTWVRFVIWLVIGFGIYFTYGISHSK 577 (584)
Q Consensus 504 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 577 (584)
+.+|+||.|..|+.++++++.+++++.. .....+....+++++|..+|+.+++|++|
T Consensus 380 -----------------~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 440 (445)
T PRK11357 380 -----------------DYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSRQ 440 (445)
T ss_pred -----------------CCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhhh
Confidence 2346799999999999999999888643 24445666788889999999988776554
No 6
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.5e-53 Score=462.74 Aligned_cols=384 Identities=23% Similarity=0.383 Sum_probs=325.6
Q ss_pred cccccCCCCCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Q psy6067 19 EDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKS 98 (584)
Q Consensus 19 ~~~~~~~~~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~ 98 (584)
++.|++.++++++++|+++.+|+.++++|+++|+|+|..++... ..+||.++++|+++++++++.+++++||++++|++
T Consensus 6 ~~~~~~~~~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~-~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~ 84 (458)
T PRK10249 6 TVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAI-QMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVS 84 (458)
T ss_pred ccchhhccCCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33333445555689999999999999999999999999999965 67899999999999999999999999999999999
Q ss_pred CCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHH
Q psy6067 99 GSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAG 178 (584)
Q Consensus 99 GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 178 (584)
||.|.|+++.+||.+||.+||.+|+++....+. +....+.+++.+++ ..+.+.+..+
T Consensus 85 Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~-------~~~a~~~~~~~~~~----------------~~~~~~~~~~ 141 (458)
T PRK10249 85 GSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMA-------ELTAAGIYMQYWFP----------------DVPTWIWAAA 141 (458)
T ss_pred CCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCC----------------cCcHHHHHHH
Confidence 999999999999999999999999999887777 77777777776554 1223456777
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHH
Q psy6067 179 IVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAK 258 (584)
Q Consensus 179 ~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~ 258 (584)
++++.+.+|++|+|..++++.+++..|++.++++++.++......+ ........+.+ ..+++.|+|+.+++.++..
T Consensus 142 ~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~-~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~ 217 (458)
T PRK10249 142 FFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGH-GGEKASIDNLW---RYGGFFATGWNGLILSLAV 217 (458)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCChhhcc---CCCCCCCCcHHHHHHHHHH
Confidence 8888999999999999999999999999877777666553211000 00000011111 1123446788899999999
Q ss_pred HHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHH
Q psy6067 259 CFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVT 337 (584)
Q Consensus 259 ~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~ 337 (584)
.+|+|.|+|.+++++||+|||+||+||+++.++..+.++|++..+......|+++.. +++|+.+++++.++++...++.
T Consensus 218 ~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 297 (458)
T PRK10249 218 IMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALN 297 (458)
T ss_pred HHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999998888887764 3579999999999899999999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHH
Q psy6067 338 VGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSI 411 (584)
Q Consensus 338 ~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~ 411 (584)
++.+++.+++.++.+++.||+++++||||.+|++|+|+| |+++|++|++++.+++.+..++. .++.+.++++.
T Consensus 298 ~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~ 376 (458)
T PRK10249 298 FVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVA 376 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 78999999999999988766553 37889999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy6067 412 GTLLAYTIVALSVLILRYSE 431 (584)
Q Consensus 412 ~~l~~y~l~~la~i~~r~~~ 431 (584)
..++.|++.+++++++|+++
T Consensus 377 ~~~i~y~~~~~~~l~~r~~~ 396 (458)
T PRK10249 377 TLLLNWIMICLAHLRFRAAM 396 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999764
No 7
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-54 Score=449.63 Aligned_cols=435 Identities=22% Similarity=0.317 Sum_probs=377.1
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHh
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSI 109 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~l 109 (584)
++||+|+.+|+.++++|+.||+|+|+..|... ..+||. +++++++.++++.+++.+..||+..+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l-~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKAL-SQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhh-hccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 59999999999999999999999999999855 789995 9999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHh
Q psy6067 110 GEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISW 189 (584)
Q Consensus 110 G~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~ 189 (584)
+|.+||..||.||+.|.+..+. +..+.+..++++++ ...+.+++..++.+++.++|.+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~-------El~aa~~vi~yW~p---------------~~v~~~~w~~iF~~~i~~iN~~ 177 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPL-------ELTAASLVIQYWFP---------------DTVPPWIWIAIFLVLIFLLNLF 177 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhH-------HHHHHHHhhhhhcC---------------CCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999 99999988888886 1235678888999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhh
Q psy6067 190 GVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCI 269 (584)
Q Consensus 190 G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~ 269 (584)
|+|..+..+.++..+|++.++.+++.++...-...-. .....++.+++ .+..++|+.|++..+..+.|+|.|.|.+
T Consensus 178 ~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~-~~~ig~~yw~~---pg~F~~gf~g~~~v~v~a~Fsf~GtElv 253 (541)
T COG0833 178 GVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPT-HGYIGFNYWHD---PGAFAGGFKGFCSVFVIAAFSFSGTELV 253 (541)
T ss_pred cccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCcceeeecC---CCCCCcchHHHHHHHhhheeeeeceeee
Confidence 9999999999999999999999988888742111100 11112223322 3356788999999999999999999999
Q ss_pred hcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC---------cCCcHHHHHHHcChhHHHHHHHHHH
Q psy6067 270 ATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD---------AEAPFPHIFDSLGWPVMKWLVTVGS 340 (584)
Q Consensus 270 ~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~---------~~~p~~~~~~~~~~~~~~~li~~~~ 340 (584)
...++|.|||+|++|||+.-....+.++|++..+++..++|+++.+ ..+|++.++++.|.+..+.++++++
T Consensus 254 giaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVI 333 (541)
T COG0833 254 GLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVI 333 (541)
T ss_pred eeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHH
Confidence 9999999999999999999999999999999999999999987732 3569999999999999999999999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHH
Q psy6067 341 LFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSIGTL 414 (584)
Q Consensus 341 ~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~~~l 414 (584)
+.+.+++.|+.++++||++++||+||..||+|+|+| |+|+|.+|++++.+++++..+.. .|++|.+++++..+
T Consensus 334 L~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~ 412 (541)
T COG0833 334 LTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGF 412 (541)
T ss_pred HHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 88999999999999998755544 28899999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhh
Q psy6067 415 LAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSA 494 (584)
Q Consensus 415 ~~y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (584)
+.|+.++++.+|+|+..+.
T Consensus 413 i~W~~I~~shirFR~A~~~------------------------------------------------------------- 431 (541)
T COG0833 413 IAWGSICLSHIRFRRAMKA------------------------------------------------------------- 431 (541)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------------------------------------------------
Confidence 9999999999999998653
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHH----------HHHHHHHHH
Q psy6067 495 LQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWV----------RFVIWLVIG 564 (584)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 564 (584)
|.++.++.|||.|++|+.|++++++|..+++..++..+. ..-+-+-+.
T Consensus 432 ----------------------QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~ 489 (541)
T COG0833 432 ----------------------QGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIF 489 (541)
T ss_pred ----------------------cCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHH
Confidence 333356789999999999999999999998876554322 222333455
Q ss_pred HHHHhhhccccc
Q psy6067 565 FGIYFTYGISHS 576 (584)
Q Consensus 565 ~~~y~~~~~~~~ 576 (584)
+++|+.|+..+|
T Consensus 490 i~~y~~yk~~~k 501 (541)
T COG0833 490 IAIYIGYKLYKK 501 (541)
T ss_pred HHHHHHheeEec
Confidence 567777766544
No 8
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=5.6e-53 Score=456.77 Aligned_cols=423 Identities=17% Similarity=0.288 Sum_probs=357.9
Q ss_pred cccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhch
Q psy6067 32 LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGE 111 (584)
Q Consensus 32 l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~ 111 (584)
+||++|+++++++++|+++|+|+|..++.+. .+|+..+++|++++++.++.+++|+|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~--~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 5789999999999999999999999998754 46888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhh
Q psy6067 112 FAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGV 191 (584)
Q Consensus 112 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~ 191 (584)
..||++||.+++.+...... .+....+|+..+++ . +. .+....++.++++++.+.+|++|+
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~-------~a~~~~~y~~~~~~-~---------~~--~~~~~~~~~~~~l~~~~~ln~~g~ 142 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVA-------IAISAVGYGTELFG-A---------TL--SPVQICLATIGVLWLCTVANFGGA 142 (438)
T ss_pred chHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcc-c---------cc--chHHHHHHHHHHHHHHHHHHHhCH
Confidence 99999999999998887767 66666777777665 1 00 122334566777788999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCc---chHHHHHHHHHHHHhhhhhhh
Q psy6067 192 SESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPF---GLNGIIVGAAKCFFGFVGFDC 268 (584)
Q Consensus 192 r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~i~~~~~af~G~e~ 268 (584)
|..++++++.+..++++++++.+.++...+.+++.+. +.+. .+.++..++..+.|+|.|+|.
T Consensus 143 ~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~af~G~e~ 207 (438)
T PRK10655 143 RITGQISSVTVWGVIIPVVGLSIIGWFWFSPSLYVAA---------------WNPHHLPFFSAVGSSIAMTLWAFLGLES 207 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCC---------------cCccCCchHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999988888877776654433322110 1111 135677888899999999999
Q ss_pred hhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q psy6067 269 IATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTA 347 (584)
Q Consensus 269 ~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s 347 (584)
+++++||+|||+||+||+++.++.++.++|++...+.....|++++. +++|+.+++++..+++...++.+..+++.+++
T Consensus 208 ~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~ 287 (438)
T PRK10655 208 ACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGS 287 (438)
T ss_pred hhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888887764 46788888888888888888899999999999
Q ss_pred HHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHHHH
Q psy6067 348 MFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-------KLDQLVDMLSIGTLLAYTIV 420 (584)
Q Consensus 348 ~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-------~~~~l~~~~s~~~l~~y~l~ 420 (584)
.++++.+.+|++++++|||.+|++|+|+| |+++|+++++++.+++.++.+.. .++.+.++.++..++.|.+.
T Consensus 288 ~~~~~~~~sR~~~~~a~dg~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~ 366 (438)
T PRK10655 288 LLGWQFTIAQVFKSSADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILS 366 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 78999999999998887665532 47889999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHHH
Q psy6067 421 ALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATF 500 (584)
Q Consensus 421 ~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (584)
+++.+++|+|+|
T Consensus 367 ~~~~~~lr~~~~-------------------------------------------------------------------- 378 (438)
T PRK10655 367 MAALVIIQKVAN-------------------------------------------------------------------- 378 (438)
T ss_pred HHHHHHHHhhCC--------------------------------------------------------------------
Confidence 999999998864
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy6067 501 TLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQKL 580 (584)
Q Consensus 501 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 580 (584)
+.+||||.|. ++++++.+.+++.+...+.+......+++++|..+|..+++|+.++++
T Consensus 379 --------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~ 436 (438)
T PRK10655 379 --------------------VPPSKAKVAN--FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFELKNK 436 (438)
T ss_pred --------------------CCcchhHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3456777653 889999999998888777777777888999999999887777766555
Q ss_pred c
Q psy6067 581 T 581 (584)
Q Consensus 581 ~ 581 (584)
+
T Consensus 437 ~ 437 (438)
T PRK10655 437 H 437 (438)
T ss_pred C
Confidence 4
No 9
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=1.1e-52 Score=456.37 Aligned_cols=437 Identities=21% Similarity=0.319 Sum_probs=357.8
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHH
Q psy6067 29 REKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLS 108 (584)
Q Consensus 29 ~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~ 108 (584)
++++||+++.+|.+++++|+++|+|+|..++... ..+||..+++|+++++..++.+++++||++++|++||.|.|+++.
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~-~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~ 82 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAI-KMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN 82 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3468999999999999999999999999999865 678999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
+||.+||.+||.+++.+....+. +....+.+...+++ ..+...+.++++++...+|+
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~ln~ 139 (457)
T PRK10580 83 LGPLAGYITGWTYCFEILIVAIA-------DVTAFGIYMGVWFP----------------TVPHWIWVLSVVLIICAVNL 139 (457)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCC----------------CCChHHHHHHHHHHHHHHHH
Confidence 99999999999999998777777 77777777766554 12233456666778899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhccc--ccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVGSGLFK--MNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGF 266 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~ 266 (584)
+|+|..++++.+++.++++.++++++.++.. ....+.. .+....+.+ .+++..|+|+.+++.++..+.|+|.|+
T Consensus 140 ~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~-~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~fsf~G~ 215 (457)
T PRK10580 140 MSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGG-QPTGIHNLW---SNGGFFSNGWLGMVMSLQMVMFAYGGI 215 (457)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCccccC---CCCCCCCcchHHHHHHHHHHHHHHhCH
Confidence 9999999999999999999888776655321 1100000 011111111 122344677888999999999999999
Q ss_pred hhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHH
Q psy6067 267 DCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALL 345 (584)
Q Consensus 267 e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~ 345 (584)
|.+++++||+|||+||+||+++.+.+++.++|++..+.+....|+++.. +++|+..+++..+.++...++.+..+.+.+
T Consensus 216 e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~ 295 (457)
T PRK10580 216 EIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASL 295 (457)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888888765 357888888888888888899998999999
Q ss_pred HHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHH
Q psy6067 346 TAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSIGTLLAYTI 419 (584)
Q Consensus 346 ~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~~~l~~y~l 419 (584)
++.++++++.||++++|||||.+|++|+|+| |+++|++|++++.++..+..... .++.+.++++...++.|++
T Consensus 296 ~~~~~~~~~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~ 374 (457)
T PRK10580 296 SAINSDVFGVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIM 374 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 68999999999977655433321 2678999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHH
Q psy6067 420 VALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYAT 499 (584)
Q Consensus 420 ~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (584)
.+++.+++|+++++
T Consensus 375 ~~~~~~~lr~~~~~------------------------------------------------------------------ 388 (457)
T PRK10580 375 ILLSQIAFRRRLPP------------------------------------------------------------------ 388 (457)
T ss_pred HHHHHHHHHHHHHh------------------------------------------------------------------
Confidence 99999999988642
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcC--CH---HHHHHHHHHHHHHHHHHhhhccc
Q psy6067 500 FTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINL--DI---STWVRFVIWLVIGFGIYFTYGIS 574 (584)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~y~~~~~~ 574 (584)
++.++++||.|++|+.++++++.+.+++... .+ .+......|++++.+.|..|+ |
T Consensus 389 -------------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~-~ 448 (457)
T PRK10580 389 -------------------EEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR-R 448 (457)
T ss_pred -------------------cCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 1134578999999999999999999877643 12 234557778888888888775 3
Q ss_pred cccccc
Q psy6067 575 HSKQKL 580 (584)
Q Consensus 575 ~~~~~~ 580 (584)
++||-.
T Consensus 449 ~~~~~~ 454 (457)
T PRK10580 449 HDRQLA 454 (457)
T ss_pred ccCCcc
Confidence 444433
No 10
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=1.3e-52 Score=454.46 Aligned_cols=428 Identities=21% Similarity=0.299 Sum_probs=355.1
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHH
Q psy6067 29 REKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYL 107 (584)
Q Consensus 29 ~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~ 107 (584)
++++||++|.++.+++++++++| |.+...+... ..+||. ..+++++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~-~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGL-AQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45689999999999999999997 6666655433 567885 78899999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHH
Q psy6067 108 SIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALI 187 (584)
Q Consensus 108 ~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in 187 (584)
.+||..||.+||.+++.+....+. ++..+++|++..++ ....+.++.+++++.+.+|
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~-------~a~~~~~~l~~~~p----------------~~~~~~~~~~~~~~~~~ln 136 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPA-------IACFIGAYCESLFP----------------VGPGWLAALVFYIVFIGIN 136 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc----------------cCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999988776 1123456677778889999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhh
Q psy6067 188 SWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFD 267 (584)
Q Consensus 188 ~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e 267 (584)
++|+|..++++.+++.++++.++++.+.+..+.+..++. .... .+.+++.+.++.+++.++..++|+|.|+|
T Consensus 137 ~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~af~G~e 208 (442)
T TIGR00908 137 ILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLF------NGPQ--TGASSFLPGAYVGVFAAIPFAIWFFLAVE 208 (442)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhc------cCCc--cCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988887665554433222211111 1001 11234556677788999999999999999
Q ss_pred hhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcCh--hHHHHHHHHHHHHHH
Q psy6067 268 CIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGW--PVMKWLVTVGSLFAL 344 (584)
Q Consensus 268 ~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~--~~~~~li~~~~~~s~ 344 (584)
.+++++||+|||+||+||+++.++.++.++|+..........+.+++. +++|+.++++...+ ++...++.+..+++.
T Consensus 209 ~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~ 288 (442)
T TIGR00908 209 GVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGL 288 (442)
T ss_pred HHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887777666766653 46799888877632 456677788888899
Q ss_pred HHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Q psy6067 345 LTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSV 424 (584)
Q Consensus 345 ~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~l~~y~l~~la~ 424 (584)
+++.++.+++.+|++++|||||.+|++|+|+| |+++|++|++++.+++.++.+..+.+.+.++.++..++.|++.++++
T Consensus 289 ~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~ 367 (442)
T TIGR00908 289 IASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAH 367 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999888877888889999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHHHHHHH
Q psy6067 425 LILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLG 504 (584)
Q Consensus 425 i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (584)
+++|+++|
T Consensus 368 i~lr~~~p------------------------------------------------------------------------ 375 (442)
T TIGR00908 368 FTLRIRRP------------------------------------------------------------------------ 375 (442)
T ss_pred HHHHhcCC------------------------------------------------------------------------
Confidence 99998865
Q ss_pred HHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy6067 505 LVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINL---DISTWVRFVIWLVIGFGIYFTYGISHSKQ 578 (584)
Q Consensus 505 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 578 (584)
+.+||||.|..|+.++++++.+.++++.. +++.+....+++++..+.|+.|+++|.++
T Consensus 376 ----------------~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 376 ----------------DMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred ----------------CCCCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 45688999999999999999998877643 44455556677778888888887766544
No 11
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=2.9e-52 Score=450.14 Aligned_cols=426 Identities=35% Similarity=0.639 Sum_probs=370.8
Q ss_pred cccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhch
Q psy6067 32 LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGE 111 (584)
Q Consensus 32 l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~ 111 (584)
+||++|.+|.+++.++.++|+|+|..++... ..+|+..+++|+++++..++.+++++|+++++|++||.|.|++|.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~-~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 5899999999999999999999999999865 567898999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCC--CCccccccCCCCCCchhhHHHHHHHHHHHHHHHh
Q psy6067 112 FAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGG--ETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISW 189 (584)
Q Consensus 112 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~ 189 (584)
..|++.+|.+++.+....+. .+...++++..++++.+ .+.+... ..+......+..++++++++.+|++
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~l~~~ 150 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAA-------VAVGWGGYLQEFLPGVGLDLPAVLTA--KPGNGGVFNLPALLIVLFLTYILYL 150 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHccccCchhhhc--CCcccccccHHHHHHHHHHHHHHHh
Confidence 99999999999999999899 88999999888876211 1110000 0000011124467788889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhh
Q psy6067 190 GVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCI 269 (584)
Q Consensus 190 G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~ 269 (584)
|+|..+|++.+++.++++.++++++.++.+.+.+++.+ +.+.++.++..++...+|+|.|+|.+
T Consensus 151 g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~af~G~e~~ 214 (429)
T TIGR00909 151 GAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTP----------------FMPMGFGGVGAATALVFFAFIGFEAI 214 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCC----------------CCCCcHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999998877777665544333321 22345667888999999999999999
Q ss_pred hcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q psy6067 270 ATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAM 348 (584)
Q Consensus 270 ~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~ 348 (584)
.+++||+|||+|++||+++.++.++.++|++..+......|.+++. ++.|+.++.++.++++...++.+..+++.+++.
T Consensus 215 ~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (429)
T TIGR00909 215 STAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVM 294 (429)
T ss_pred HhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888887654 456888888888899999999999999999999
Q ss_pred HHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6067 349 FGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILR 428 (584)
Q Consensus 349 ~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~l~~y~l~~la~i~~r 428 (584)
++++...+|+++++||||.+|++|+|+|||+++|++|+++..+++.++....+++.+.++.++..++.|++.+++++++|
T Consensus 295 ~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr 374 (429)
T TIGR00909 295 LAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILR 374 (429)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887788999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHHHHHHHHHHH
Q psy6067 429 YSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLGLVYT 508 (584)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (584)
+|+|
T Consensus 375 ~~~~---------------------------------------------------------------------------- 378 (429)
T TIGR00909 375 RRRP---------------------------------------------------------------------------- 378 (429)
T ss_pred hhcC----------------------------------------------------------------------------
Confidence 8765
Q ss_pred HHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhh
Q psy6067 509 VVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTY 571 (584)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 571 (584)
+.+||||.|..|+.+.+.+..+.++....++.++....+|+.+|..+|..|
T Consensus 379 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 429 (429)
T TIGR00909 379 ------------DIQRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFIY 429 (429)
T ss_pred ------------CCCCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999999999999999999999999999765
No 12
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.5e-52 Score=454.81 Aligned_cols=377 Identities=21% Similarity=0.364 Sum_probs=324.1
Q ss_pred CCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehH
Q psy6067 27 GSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTY 106 (584)
Q Consensus 27 ~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~ 106 (584)
+.++++||+++.+|..++++|+++|+|+|..++... ..+||+.+++|+++++..++.+++++|+++++|.+||.|.|++
T Consensus 5 ~~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~ 83 (456)
T PRK10238 5 QHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVI-QSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAY 83 (456)
T ss_pred ccchhhhccCcHHHHHHHHhhccccchHHHhhHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 344479999999999999999999999999999966 6789999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHH
Q psy6067 107 LSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSAL 186 (584)
Q Consensus 107 ~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~i 186 (584)
|.+||..||..||.+++++....++ +....+++++.+++ ..+.+.+..+++++.+.+
T Consensus 84 ~~~g~~~gf~~Gw~~~~~~~~~~~~-------~~~~~~~~~~~~~p----------------~~~~~~~~~i~~~~~~~l 140 (456)
T PRK10238 84 KYWGSFAGFASGWNYWVLYVLVAMA-------ELTAVGKYIQFWYP----------------EIPTWVSAAVFFVVINAI 140 (456)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC----------------cCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888 88888888876654 122345667777889999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhh
Q psy6067 187 ISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGF 266 (584)
Q Consensus 187 n~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~ 266 (584)
|++|+|..++++.+++.+|+..++++++.++......+.. +.....+.+ +++++.|+|+.++..++..+.|+|.|+
T Consensus 141 N~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~af~G~ 216 (456)
T PRK10238 141 NLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGG-PQATVSNLW---DQGGFLPHGFTGLVMMMAIIMFSFGGL 216 (456)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCccccccC---CCCCCccccHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999988877666544321111000 011111111 123466778888888888999999999
Q ss_pred hhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHH
Q psy6067 267 DCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALL 345 (584)
Q Consensus 267 e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~ 345 (584)
|.+++++||+|||+||+||++..++..+.+.|++.........|++++. +++|+.+++++.+.++...++++..+.+.+
T Consensus 217 e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~ 296 (456)
T PRK10238 217 ELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAAL 296 (456)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888778888764 467999999999989889999999999999
Q ss_pred HHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHH
Q psy6067 346 TAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSIGTLLAYTI 419 (584)
Q Consensus 346 ~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~~~l~~y~l 419 (584)
++.++++++.||++++|||||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++++...++.|.+
T Consensus 297 s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~ 375 (456)
T PRK10238 297 SVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAM 375 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 77999999999999988776652 3888999999999999999
Q ss_pred HHHHHHHHhhccC
Q psy6067 420 VALSVLILRYSED 432 (584)
Q Consensus 420 ~~la~i~~r~~~~ 432 (584)
++++.+++||+++
T Consensus 376 ~~~~~l~~r~~~~ 388 (456)
T PRK10238 376 ISLAHMKFRRAKQ 388 (456)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 13
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=2e-52 Score=457.85 Aligned_cols=413 Identities=20% Similarity=0.280 Sum_probs=335.1
Q ss_pred CCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeeh
Q psy6067 27 GSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKSGSAYNYT 105 (584)
Q Consensus 27 ~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~ 105 (584)
.+++++||+++.+|++++++|+++|+|+|..++..+ ..+||. .+++|+++++++++.+++|+||++++|++||.|.|+
T Consensus 8 ~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~-~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~ 86 (489)
T PRK10836 8 TEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATI-SQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYG 86 (489)
T ss_pred CCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Confidence 344679999999999999999999999999999976 678985 899999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHH
Q psy6067 106 YLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSA 185 (584)
Q Consensus 106 ~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~ 185 (584)
++.+||.+||.+||.+++.+....+. .......+++.+++ ..+.+.+..+++++++.
T Consensus 87 ~~~~g~~~gf~~Gw~~~~~~~~~~a~-------~~~a~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 143 (489)
T PRK10836 87 QNYVEEGFGFALGWNYWYNWAVTIAV-------DLVAAQLVMSWWFP----------------DTPGWIWSALFLGVIFL 143 (489)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhcCC----------------CCchHHHHHHHHHHHHH
Confidence 99999999999999999987666555 44444334443332 11223455666777889
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc--CCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhh
Q psy6067 186 LISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMN--PRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGF 263 (584)
Q Consensus 186 in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af 263 (584)
+|++|+|..+++|++++..|+..++.+++.++.... ..+.+ . ..++++.. ..+ ..+.|+.+++.++...+|+|
T Consensus 144 lN~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~--~-~~~~~~~~-~~~-~~~~g~~~~~~~~~~~~faf 218 (489)
T PRK10836 144 LNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAE--P-AGWSNWTI-GDA-PFAGGFAAMIGVAMIVGFSF 218 (489)
T ss_pred HHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC--C-CccccCCC-CCC-CCcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999887776665554211 00000 0 00011110 011 12346667777677778999
Q ss_pred hhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC---------cCCcHHHHHHHcChhHHHH
Q psy6067 264 VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD---------AEAPFPHIFDSLGWPVMKW 334 (584)
Q Consensus 264 ~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~---------~~~p~~~~~~~~~~~~~~~ 334 (584)
.|+|.+++++||+|||+||+||++..++..+.++|++..+.....+|.++.. ..+|+..++++.+.++...
T Consensus 219 ~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ 298 (489)
T PRK10836 219 QGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAA 298 (489)
T ss_pred ccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHH
Confidence 9999999999999999999999999999999999999999998888865421 2468889999988888889
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHH
Q psy6067 335 LVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDM 408 (584)
Q Consensus 335 li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~ 408 (584)
+++++.+++.+++.|+.+++.||++++|||||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++
T Consensus 299 ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~ 377 (489)
T PRK10836 299 VMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNT 377 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 78999999999999988776653 25678899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCcccccccccc
Q psy6067 409 LSIGTLLAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPT 488 (584)
Q Consensus 409 ~s~~~l~~y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (584)
+++..++.|++.+++++++||+.+++
T Consensus 378 ~~~~~~~~y~~~~~a~l~~R~~~~~~------------------------------------------------------ 403 (489)
T PRK10836 378 SGMTGFIAWLGIAISHYRFRRGYVLQ------------------------------------------------------ 403 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------------------------------------------------------
Confidence 99999999999999999999874310
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHH
Q psy6067 489 SDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDIS 552 (584)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (584)
.| +.+++|||+|+.|+.++++++.|++++...+..
T Consensus 404 ----------------------------~~-~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~ 438 (489)
T PRK10836 404 ----------------------------GH-DLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYE 438 (489)
T ss_pred ----------------------------CC-CcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 11 134589999999999999999999998865554
No 14
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=3.6e-52 Score=453.57 Aligned_cols=379 Identities=19% Similarity=0.308 Sum_probs=320.3
Q ss_pred CCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehH
Q psy6067 27 GSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTY 106 (584)
Q Consensus 27 ~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~ 106 (584)
.+++++||+++.++..++++|+++|+|+|..++... +.+||..+++|++++++.++.+.+++|+++..|..||.|.|++
T Consensus 13 ~~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~-~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~ 91 (469)
T PRK11049 13 PAEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTI-SLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFAS 91 (469)
T ss_pred ccchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHH-hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344579999999999999999999999999999876 6789988999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHH
Q psy6067 107 LSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSAL 186 (584)
Q Consensus 107 ~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~i 186 (584)
+.+||..||++||.+++++....++ ++...+.++..+++ ....+.++.+++++++.+
T Consensus 92 ~~~g~~~gf~~gW~~~~~~~~~~~a-------~~~a~~~~~~~~~p----------------~~~~~~~~~~~~~~~~~i 148 (469)
T PRK11049 92 DLLGPWAGYFTGWTYWFCWVVTGIA-------DVVAITAYAQFWFP----------------DLSDWVASLAVVLLLLSL 148 (469)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC----------------CCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999877777 77777777776654 112245556677788999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCC--cccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhh
Q psy6067 187 ISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRN--WAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFV 264 (584)
Q Consensus 187 n~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~ 264 (584)
|++|.|..+++|++.+.+|+..++.+++.++.....+. .+.....+.+. .+++++.|+|+.+++.++...+|+|.
T Consensus 149 N~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~g~~~~~~~~~~~~~af~ 225 (469)
T PRK11049 149 NLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHL---WNDGGMFPKGLSGFFAGFQIAVFAFV 225 (469)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccc---CCCCCCCcccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988888775322110 00000001111 12234557788889999999999999
Q ss_pred hhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-CCcHHHHHHHcChhHHHHHHHHHHHHH
Q psy6067 265 GFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EAPFPHIFDSLGWPVMKWLVTVGSLFA 343 (584)
Q Consensus 265 G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-~~p~~~~~~~~~~~~~~~li~~~~~~s 343 (584)
|+|.+++++||+|||+||+||++..+.+.+.++|++.........|+++..+ ++|+.+.++..++++...++.+..+++
T Consensus 226 G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s 305 (469)
T PRK11049 226 GIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTS 305 (469)
T ss_pred cHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999899999999999999988888887743 579999998889899999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHH---HHh-----CHHHHHHHHHHHHHH
Q psy6067 344 LLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLS---AVF-----KLDQLVDMLSIGTLL 415 (584)
Q Consensus 344 ~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~---~~~-----~~~~l~~~~s~~~l~ 415 (584)
.+++.++.+++.||++++|||||.+|++|+|+| |+|+|++|++++.++..+.. ... .++.+.+++++...+
T Consensus 306 ~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 384 (469)
T PRK11049 306 AASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMF 384 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 66999999999987655321 221 367788999999999
Q ss_pred HHHHHHHHHHHHhhccCC
Q psy6067 416 AYTIVALSVLILRYSEDG 433 (584)
Q Consensus 416 ~y~l~~la~i~~r~~~~~ 433 (584)
.|++.+++++++|+++|+
T Consensus 385 ~y~~~~~a~~~lr~~~p~ 402 (469)
T PRK11049 385 VWTIILCSYLVYRKQRPH 402 (469)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999999998763
No 15
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=8.7e-52 Score=448.11 Aligned_cols=421 Identities=19% Similarity=0.248 Sum_probs=350.9
Q ss_pred cccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHh
Q psy6067 30 EKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSI 109 (584)
Q Consensus 30 ~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~l 109 (584)
.+++|++++++++++++|+++|+|+|..++.++ . .|+..+++|+++++..++.+++++||++++|++||.|.|+++.+
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a-~-~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~ 81 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLA-S-TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCF 81 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHc
Confidence 357899999999999999999999999998865 3 35667899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHh
Q psy6067 110 GEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISW 189 (584)
Q Consensus 110 G~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~ 189 (584)
||.+||.+||.+|+.+.....+ ......++...+++ . .+ .+....++.++++++++.+|++
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~--------~~---~~~~~~~~~~~~~~~~~~ln~~ 142 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIA-------MVVIGVGYLSYFFP-I--------LK---DPLVLTITCVVVLWIFVLLNIV 142 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc-c--------cC---CcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988777666 55566667766655 1 00 1122335567777889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhh
Q psy6067 190 GVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCI 269 (584)
Q Consensus 190 G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~ 269 (584)
|+|..+++|++++.++++.++++.+.++...+.+++.. .++ ..+ ..++.++..++..++|+|.|+|.+
T Consensus 143 gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~-------~~~---~~~--~~~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T PRK10644 143 GPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA-------AWN---VSG--LGTFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccC-------Ccc---ccc--cchHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999888887777765433322211 000 001 124556777888999999999999
Q ss_pred hcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q psy6067 270 ATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAM 348 (584)
Q Consensus 270 ~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~ 348 (584)
++++||+|||+|++||+++.++.++.++|++..++...+.|++++. ++.|+.+++++..+++...++.+..+++.+++.
T Consensus 211 ~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~ 290 (445)
T PRK10644 211 SVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSL 290 (445)
T ss_pred HHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987764 467999998888888888888888899999999
Q ss_pred HHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHHHHH
Q psy6067 349 FGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-------KLDQLVDMLSIGTLLAYTIVA 421 (584)
Q Consensus 349 ~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-------~~~~l~~~~s~~~l~~y~l~~ 421 (584)
++.+...+|.+++|||||.+|++|+|+| |+++|++|++++.+++.++.+.. .++.+.+++++..++.|++.+
T Consensus 291 ~~~~~~~sr~~~a~ardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~ 369 (445)
T PRK10644 291 GGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTC 369 (445)
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 67999999999999988766542 388899999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHHHH
Q psy6067 422 LSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFT 501 (584)
Q Consensus 422 la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (584)
++.+++|+|+++
T Consensus 370 ~~~~~l~~~~~~-------------------------------------------------------------------- 381 (445)
T PRK10644 370 AALLLLGHGHFG-------------------------------------------------------------------- 381 (445)
T ss_pred HHHHHHhhcCCc--------------------------------------------------------------------
Confidence 999999887531
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhh-hccccc
Q psy6067 502 LLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFT-YGISHS 576 (584)
Q Consensus 502 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~ 576 (584)
++.|+.|+.++++++.|++++...++++......+..++..+|+. +++||+
T Consensus 382 ------------------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 433 (445)
T PRK10644 382 ------------------------KARPAYLAVTLIAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALNYNRLHK 433 (445)
T ss_pred ------------------------ccccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 122456789999999999999988888888888888888887754 444444
No 16
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.1e-51 Score=448.41 Aligned_cols=376 Identities=21% Similarity=0.337 Sum_probs=320.7
Q ss_pred ccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHH
Q psy6067 29 REKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLS 108 (584)
Q Consensus 29 ~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~ 108 (584)
+.++||+++.+|.+++++|+++|+|+|..++... ..+||..+++|++++++.++.+++++||++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAI-ASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4569999999999999999999999999999866 678998889999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
+||.+||+.||.+|+++....++ ++...+++++.+++ ..+.+++.++++++.+.+|+
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~-------~~~~~~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~n~ 142 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPL-------EAIAAAGILQYWFP----------------DIPLWLFSLILTIVLTLTNL 142 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC----------------cCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 88888888887665 12345677888888899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDC 268 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~ 268 (584)
+|+|..++++++++.+|++.++.+++.++......+-......+. +. .+++++.|+|+.+++.++..+.|+|.|+|.
T Consensus 143 ~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~g~~~~~~a~~~~~~af~G~e~ 219 (452)
T TIGR01773 143 YSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFS-NL--TGKGGFFPNGIGAVLLAILVTMFSFMGTEI 219 (452)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccc-cc--cCCCCcCcccHHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999988877776653211000000000000 00 112345567888899999999999999999
Q ss_pred hhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC--cCCcHHHHHHHcChhHHHHHHHHHHHHHHHH
Q psy6067 269 IATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD--AEAPFPHIFDSLGWPVMKWLVTVGSLFALLT 346 (584)
Q Consensus 269 ~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~--~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~ 346 (584)
+++++||+|||+||+||++..+...+.++|++.........|+++.. ++.|+.++.+..++++...++.++++++.++
T Consensus 220 ~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~ 299 (452)
T TIGR01773 220 VTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLS 299 (452)
T ss_pred HhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888777866543 3348888888888898999999999999999
Q ss_pred HHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHHH
Q psy6067 347 AMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSIGTLLAYTIV 420 (584)
Q Consensus 347 s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~~~l~~y~l~ 420 (584)
+.++.+++.||++++|||||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.++++.+...++.|++.
T Consensus 300 ~~~~~~~~~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~ 378 (452)
T TIGR01773 300 CLNSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVI 378 (452)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 88999999999999888766552 26678888898999999999
Q ss_pred HHHHHHHhhccC
Q psy6067 421 ALSVLILRYSED 432 (584)
Q Consensus 421 ~la~i~~r~~~~ 432 (584)
+++.+++|+++|
T Consensus 379 ~~~~i~~r~~~~ 390 (452)
T TIGR01773 379 AVSQLRMRKKLK 390 (452)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 17
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-52 Score=426.56 Aligned_cols=438 Identities=22% Similarity=0.369 Sum_probs=384.1
Q ss_pred CCCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeeh
Q psy6067 26 SGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYT 105 (584)
Q Consensus 26 ~~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~ 105 (584)
++++++++|.|+.+|..++++|+.||+|+|..++... ..+||+.++++++++++.+.++-...||.-.-|.+|+..+|+
T Consensus 5 ~~~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I-~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a 83 (462)
T COG1113 5 KNEEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAI-AMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYA 83 (462)
T ss_pred cccchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhh-hhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHH
Confidence 3445679999999999999999999999999999854 889999999999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHH
Q psy6067 106 YLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSA 185 (584)
Q Consensus 106 ~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~ 185 (584)
++.+||..||++||.||+.++....+ +..+.+.|++.+++ ..++|+.+++.+++...
T Consensus 84 ~~~lG~~Agf~tgW~YW~~wv~v~~a-------e~tAi~~y~~~WfP----------------~vP~Wv~al~~~~l~~~ 140 (462)
T COG1113 84 RKYLGPWAGFLTGWTYWFFWVLVGIA-------ELTAIGIYLQFWFP----------------DVPQWVFALAAVVLLLA 140 (462)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC----------------CCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999998 45678999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc--CCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhh
Q psy6067 186 LISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMN--PRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGF 263 (584)
Q Consensus 186 in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af 263 (584)
+|..++|..+.++..+...|+..++.+++.|+...- .++-. ....++|. .+++++.|+|+.|++.++...+|+|
T Consensus 141 ~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~-~~~g~snl---~~hGGffP~G~~g~~~~~~~v~Faf 216 (462)
T COG1113 141 VNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGG-GAAGFSNL---WDHGGFFPNGFLGFLSALQIVMFAF 216 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCcccccc---ccCCCcCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888876322 11110 01223332 4567899999999999999999999
Q ss_pred hhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-CCcHHHHHHHcChhHHHHHHHHHHHH
Q psy6067 264 VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EAPFPHIFDSLGWPVMKWLVTVGSLF 342 (584)
Q Consensus 264 ~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-~~p~~~~~~~~~~~~~~~li~~~~~~ 342 (584)
.|.|.+...++|.|||+|.+|||+........++|+...+++....|+++.++ ++|++..++..|.|+.+.++++..+.
T Consensus 217 ~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLt 296 (462)
T COG1113 217 GGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLT 296 (462)
T ss_pred hhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEee
Confidence 99999999999999999999999999999999999999999999999998765 67999999999999999999999999
Q ss_pred HHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHH
Q psy6067 343 ALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSIGTLLA 416 (584)
Q Consensus 343 s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~~~l~~ 416 (584)
+.+++.|+.+++.+|++|++|+||..||.|+|+| |+|+|+++++++.+...+..++. .|+.+.+.++...+..
T Consensus 297 Aa~S~~NSglystsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~v 375 (462)
T COG1113 297 AALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFV 375 (462)
T ss_pred chhhcccccccccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 89999999999988777766654 3889999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhH
Q psy6067 417 YTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQ 496 (584)
Q Consensus 417 y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (584)
|.++.++.+++|+++++
T Consensus 376 W~~I~~s~l~~rk~~~~--------------------------------------------------------------- 392 (462)
T COG1113 376 WLMILLSQLKLRKAKPA--------------------------------------------------------------- 392 (462)
T ss_pred HHHHHHHHHHHHhcchh---------------------------------------------------------------
Confidence 99999999999996542
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHhhh
Q psy6067 497 YATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDI-----STWVRFVIWLVIGFGIYFTY 571 (584)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~y~~~ 571 (584)
+.++.+||+|+.|+..+++++...++...+.. .......+|+++-.+.|..+
T Consensus 393 -----------------------~~~~~~fkm~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~ 449 (462)
T COG1113 393 -----------------------EGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVK 449 (462)
T ss_pred -----------------------cccCcccccccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHh
Confidence 14567899999999998888777766543321 34555667777777777666
Q ss_pred ccccccc
Q psy6067 572 GISHSKQ 578 (584)
Q Consensus 572 ~~~~~~~ 578 (584)
++|++++
T Consensus 450 ~~~~~~~ 456 (462)
T COG1113 450 RKKKARK 456 (462)
T ss_pred hhhhhhh
Confidence 5544443
No 18
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=6.6e-51 Score=445.39 Aligned_cols=432 Identities=19% Similarity=0.287 Sum_probs=343.7
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccC-cCCceeehHHHhc
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISK-SGSAYNYTYLSIG 110 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~-~GG~y~~~~~~lG 110 (584)
||+++.+|+.++++|+++|+|+|..++... +.+||. .+++|+++++++++.+++++||++++|+ +||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~-~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTAL-ATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 589999999999999999999999999876 678885 7999999999999999999999999996 5567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 111 EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 111 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
|.+||.+||.++++++...+. +....+.++..+.+ ......+..+++++.+.+|++|
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~-------~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~in~~g 136 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPL-------ELVTASMTIQYWTD----------------KVNPAVWIAIFYVFIVIINLFG 136 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcCC----------------CCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888 88888777765433 1112233345566788999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCc----chHHHHHHHHHHHHhhhhh
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPF----GLNGIIVGAAKCFFGFVGF 266 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~i~~~~~af~G~ 266 (584)
+|..++++++++..|++.++.+++.++.....+..+. ....+..+ .+.+++.+. ++.++..++..++|+|.|+
T Consensus 137 v~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~ 213 (478)
T TIGR00913 137 VKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNH-GYIGFRYW--HDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGT 213 (478)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCccccc--CCCCCCCCCCccchHHHHHHHHHHHHhhhccH
Confidence 9999999999999998888877766654321111000 00001111 011223222 2667888999999999999
Q ss_pred hhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccccc---C-------cCCcHHHHHHHcChhHHHHHH
Q psy6067 267 DCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQ---D-------AEAPFPHIFDSLGWPVMKWLV 336 (584)
Q Consensus 267 e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~---~-------~~~p~~~~~~~~~~~~~~~li 336 (584)
|.+++++||+|||+||+||+++.+..++.++|++..++.....|+++. + ..+|+..+.+..+.++...++
T Consensus 214 e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 293 (478)
T TIGR00913 214 ELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIF 293 (478)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHH
Confidence 999999999999999999999999999999999998888888886642 1 126888777888888899999
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHH
Q psy6067 337 TVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLS 410 (584)
Q Consensus 337 ~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s 410 (584)
.++.+++.+++.++.+++.+|++++|||||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++++
T Consensus 294 ~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~ 372 (478)
T TIGR00913 294 NAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISG 372 (478)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 78999999999999887544432 2788999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCcccccccccccc
Q psy6067 411 IGTLLAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSD 490 (584)
Q Consensus 411 ~~~l~~y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (584)
...++.|++.+++.+++|+++++.++
T Consensus 373 ~~~~i~y~~~~~~~i~~r~~~~~~~~------------------------------------------------------ 398 (478)
T TIGR00913 373 LSGFFTWMCICLSHIRFRKAMKAQGR------------------------------------------------------ 398 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC------------------------------------------------------
Confidence 99999999999999999987643111
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCH----------HHHHHHHHH
Q psy6067 491 CTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDI----------STWVRFVIW 560 (584)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 560 (584)
| +.+||||.|++|+.++++++.+.+++....+ .......+-
T Consensus 399 ---------------------------~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 449 (478)
T TIGR00913 399 ---------------------------S--LDELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLS 449 (478)
T ss_pred ---------------------------C--cccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 1 4578999999999999999999887765433 223333344
Q ss_pred HHHHHHHHhhhcccc
Q psy6067 561 LVIGFGIYFTYGISH 575 (584)
Q Consensus 561 ~~~~~~~y~~~~~~~ 575 (584)
+.+...+|..|+.++
T Consensus 450 ~~~~~~~~~~~~~~~ 464 (478)
T TIGR00913 450 LPIFIALYIGHKVYK 464 (478)
T ss_pred HHHHHHHHHHHHHhc
Confidence 455555666665433
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=9.3e-51 Score=438.55 Aligned_cols=363 Identities=19% Similarity=0.213 Sum_probs=306.6
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhc
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIG 110 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG 110 (584)
+.+|+++.++++++++|+++|+|+|..++..+ .+|+.++++|+++++.+++.+++++||++++|++||.|.|++| +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HC
Confidence 34789999999999999999999999999864 4688899999999999999999999999999999999999999 89
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 111 EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 111 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
|.+||.+||.+|........+ ......+|+..+++ ..+ .+....+++++++++++.+|.+|
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~-------~~~~~~~y~~~~~p---------~~~---~~~~~~~~~~~i~~~~~~ln~~g 139 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLA-------IGITAVSYLSTFFP---------VLN---DPIPAGIACIAIVWVFTFVNMLG 139 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcc---------ccC---ChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999877666666 66667778877665 111 11223455667777889999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhh
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIA 270 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~ 270 (584)
+|..++++.+.++.++++++.+.+.++.+.+++++. .++. ...+.++.+++.++..++|+|.|+|.++
T Consensus 140 vk~~~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~a~~~~~faf~G~E~~~ 207 (435)
T PRK10435 140 GTWVSRLTTIGLVLVLIPVVGTAIVGWHWFDAATYA-------ANWN-----TSDTTDGHAIIKSILLCLWAFVGVESAA 207 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHhhc-------cccc-----CCCCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999888877776666555433322211 0110 0112346789999999999999999999
Q ss_pred cccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q psy6067 271 TTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMF 349 (584)
Q Consensus 271 ~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~ 349 (584)
.++||+|||+||+||+++.+..++.++|++..+......|.++.. .++|+.+++++.++++...+++++.+++++++.+
T Consensus 208 ~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~ 287 (435)
T PRK10435 208 VSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLG 287 (435)
T ss_pred HHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988874 5689999999888899999999999999999999
Q ss_pred HhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHH------------hCHHHHHHHHHHHHHHHH
Q psy6067 350 GALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAV------------FKLDQLVDMLSIGTLLAY 417 (584)
Q Consensus 350 ~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~------------~~~~~l~~~~s~~~l~~y 417 (584)
++++..+|..+++||||.+||+|+|+| |+|+|++|++++.+++.++... ..++.+.++++...++.|
T Consensus 288 ~~~~~~~r~~~~~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y 366 (435)
T PRK10435 288 SWMMLVGQAGVRAANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPY 366 (435)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 8999999999988776554321 137889999999999999
Q ss_pred HHHHHHHHHHh
Q psy6067 418 TIVALSVLILR 428 (584)
Q Consensus 418 ~l~~la~i~~r 428 (584)
++.+++.+|+|
T Consensus 367 ~~~~~~~ir~~ 377 (435)
T PRK10435 367 FYSCVDLIRFE 377 (435)
T ss_pred HHHHHHHHHhc
Confidence 99999988664
No 20
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=3.5e-50 Score=438.54 Aligned_cols=427 Identities=19% Similarity=0.264 Sum_probs=355.7
Q ss_pred cccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccC-cCCceeehHHHh
Q psy6067 32 LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISK-SGSAYNYTYLSI 109 (584)
Q Consensus 32 l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~-~GG~y~~~~~~l 109 (584)
.+|++|.++++++++++++|+|+|..++.+. ..+|+. .+++|+++++.+++.+++|+|+++++|+ +||.|.|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~-~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLA-SVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 4789999999999999999999999999865 567885 7899999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHh
Q psy6067 110 GEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISW 189 (584)
Q Consensus 110 G~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~ 189 (584)
||.+||.+||.+|+.+...... ++....+++..+++.. +. ..+....+++++++++.+.+|++
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~-------~~~~~~~~l~~~~p~~---------~~-~~~~~~~~~~~~~~~~~~~ln~~ 146 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVA-------YAVLLFSALGYFFPLF---------GS-GNPVPSILGASVLLWVFTFLVLR 146 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhh---------cC-CCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888777 7777777777776511 00 01223346667777788999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhh
Q psy6067 190 GVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCI 269 (584)
Q Consensus 190 G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~ 269 (584)
|+|..+|+|++++..++++++++++.++...+.+++... ..++ ..+..+.++.++..++...+|+|.|||.+
T Consensus 147 Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~---~~~~-----~~p~~~~~~~~~~~~~~~~~~af~G~e~~ 218 (473)
T TIGR00905 147 GVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTAD---FWGH-----DVPSLGSVFSQVKNTMLVTLWVFIGIEGA 218 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccc---cCcc-----CCCcccchHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999988888877654333322110 0000 00011234667888899999999999999
Q ss_pred hcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCc-HHHHHHHcChhHHHHHHHHHHHHHHHHH
Q psy6067 270 ATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAP-FPHIFDSLGWPVMKWLVTVGSLFALLTA 347 (584)
Q Consensus 270 ~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p-~~~~~~~~~~~~~~~li~~~~~~s~~~s 347 (584)
++++||+|| +||+||+++.+..+++++|++...+.....|++++. .++| ..++++...+++...++.+..+++.+++
T Consensus 219 ~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~ 297 (473)
T TIGR00905 219 VVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGS 297 (473)
T ss_pred HHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999998888888764 4678 6777788888888899999999999999
Q ss_pred HHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHHHHH
Q psy6067 348 MFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAV-----FKLDQLVDMLSIGTLLAYTIVAL 422 (584)
Q Consensus 348 ~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~-----~~~~~l~~~~s~~~l~~y~l~~l 422 (584)
.++.+.+.+|++|+|||||.+|++|+|+| |+++|++|++++.+++.++.++ .+++.+.++.++..++.|.+.++
T Consensus 298 ~~~~~~~~sR~~~amardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~ 376 (473)
T TIGR00905 298 LLSWTMLAAEVPFSAAKDGLFPKIFGRVN-KNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAA 376 (473)
T ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHhhC-ccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5599999999999988765543 25889999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHHHHH
Q psy6067 423 SVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTL 502 (584)
Q Consensus 423 a~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (584)
+.+++|+|++
T Consensus 377 a~~~lr~~~~---------------------------------------------------------------------- 386 (473)
T TIGR00905 377 YLLKLAKVGT---------------------------------------------------------------------- 386 (473)
T ss_pred HHHHHHHcCC----------------------------------------------------------------------
Confidence 9999988752
Q ss_pred HHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccccc
Q psy6067 503 LGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHS 576 (584)
Q Consensus 503 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 576 (584)
.| + .+.|+.+++++++.+.+.++....++++.....+++++|..+|..++++++
T Consensus 387 --------------~~--~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 387 --------------YP--K----IKNRKALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred --------------cc--c----cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 1 233456789999999999999988888877888899999988887665443
No 21
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=4.7e-50 Score=434.05 Aligned_cols=360 Identities=21% Similarity=0.322 Sum_probs=306.9
Q ss_pred HHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHHHHHH
Q psy6067 44 LGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLEL 123 (584)
Q Consensus 44 l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~~l 123 (584)
+++|+++|+|+|..++... +.+||.++++|+++++++++.+++++||++++|++||.|.|++|.+||.+||..||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~-~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAI-AEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 5789999999999999865 778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy6067 124 FIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTF 203 (584)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~ 203 (584)
+++...+. ++...+.+++.+.+ ..+...++.+++++.+.+|++|+|..+++|.+++.
T Consensus 81 ~~~~~~~~-------~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~ 137 (446)
T PRK10197 81 FWVLVIPL-------EANIAAMILHSWVP----------------GIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLAL 137 (446)
T ss_pred HHHHHHHH-------HHHHHHHHHHhccc----------------cCcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 99998888 76666655554432 22345778888889999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCc
Q psy6067 204 LNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDI 283 (584)
Q Consensus 204 ~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~i 283 (584)
.|++.++.+++.++......+.........+. .+.+++.|+|+.++..++..++|+|.|+|.++..+||+|||+||+
T Consensus 138 ~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~---~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~i 214 (446)
T PRK10197 138 CKVIAILAFIFLGAVAISGFYPYAEVSGISRL---WDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHI 214 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcchhc---CCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhH
Confidence 99998888877766532211000000000011 112335577888999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccccCc--CCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy6067 284 PLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA--EAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYA 361 (584)
Q Consensus 284 p~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~--~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a 361 (584)
||++..++..+.++|++..++.....|+++.+. .+++..+.+..++++...+++++.+++.+++.|+++++.+|++++
T Consensus 215 Prai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a 294 (446)
T PRK10197 215 VRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYS 294 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876443 356777888889999999999999999999999999999999999
Q ss_pred HHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy6067 362 MSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSIGTLLAYTIVALSVLILRYSE 431 (584)
Q Consensus 362 ~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~~~l~~y~l~~la~i~~r~~~ 431 (584)
+||||.+|++|+|+| |+++|++|++++.+++.+..+.. .++.+.++.+...++.|.+++++.+++||+.
T Consensus 295 ~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~ 369 (446)
T PRK10197 295 LSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL 369 (446)
T ss_pred HHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 88999999999988777655442 4788999999999999999999999999874
No 22
>KOG1286|consensus
Probab=100.00 E-value=9e-51 Score=440.43 Aligned_cols=388 Identities=35% Similarity=0.571 Sum_probs=325.9
Q ss_pred CCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccC-cCCceeeh
Q psy6067 27 GSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISK-SGSAYNYT 105 (584)
Q Consensus 27 ~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~-~GG~y~~~ 105 (584)
++++++||+|+.+|+.++++|+++|+|+|+..|.++.+.+||+.+++++++++.+++.+++++|++.++|. +||.|.|+
T Consensus 23 ~~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya 102 (554)
T KOG1286|consen 23 EGETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYA 102 (554)
T ss_pred CccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeee
Confidence 34468999999999999999999999999999998866667789999999999999999999999999999 59999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccc-cCCCCCCchhhHHHHHHHHHHH
Q psy6067 106 YLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTT-DRYSFLSTYPDFIAAGIVMLMS 184 (584)
Q Consensus 106 ~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ii~~~~l~l~~ 184 (584)
+|.+||.+||.+||.+++.|++..++ ++.+.+.+++++.+ ...+... .+.+........+++++++.++
T Consensus 103 ~~~i~e~~aF~~gWny~l~y~i~~a~-------e~~a~s~~~~~w~~---~~~~~~~~~~~~~~~~~~~fla~~v~in~~ 172 (554)
T KOG1286|consen 103 YRFVGESLAFAIGWNYLLEYVIGLAA-------EARAWSSYLDYWTG---ASLIGILVDTVNPGGWIPDFLAFILIINLF 172 (554)
T ss_pred eeeeCcHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHhc---cccccccccCCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 99999999999871 1100000 0111112233344444443333
Q ss_pred HHHH-hhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhh
Q psy6067 185 ALIS-WGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGF 263 (584)
Q Consensus 185 ~in~-~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af 263 (584)
.+-. .+.|.....+++++.+.++.+.+++++|....|+.+|..... + .+++++.|.|+.|++.++..++|+|
T Consensus 173 gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y-----~--~~~g~F~p~gf~Gv~s~~~~~~fsf 245 (554)
T KOG1286|consen 173 GVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRY-----W--HDPGAFFPFGFKGVLSGAATAFFSF 245 (554)
T ss_pred HHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccc-----c--CCCCCcCCCCcceeeHHHHHHHHHH
Confidence 3333 555667778888888888888888888887777666654221 1 1246688888999999999999999
Q ss_pred hhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccc--cCcCC----cHHHHHHHcChhHHHHHHH
Q psy6067 264 VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE--QDAEA----PFPHIFDSLGWPVMKWLVT 337 (584)
Q Consensus 264 ~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~--~~~~~----p~~~~~~~~~~~~~~~li~ 337 (584)
.|+|.++..+||.|||+|++|+|+..++.++.++|++..+.+..++|+++ +.+++ |+..+.+..+.+.++.+++
T Consensus 246 ~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivn 325 (554)
T KOG1286|consen 246 IGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVN 325 (554)
T ss_pred hhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhh
Confidence 99999999999999999999999999999999999999999999999988 66655 4444444445555666999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCH------HHHHHHHHH
Q psy6067 338 VGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKL------DQLVDMLSI 411 (584)
Q Consensus 338 ~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~------~~l~~~~s~ 411 (584)
+++++++.++.|+.+++.||.+++||+||++||+|+++|+| |+|++|++++.+++.+..+..+. ++++++.++
T Consensus 326 a~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si 404 (554)
T KOG1286|consen 326 AGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI 404 (554)
T ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999955 99999999999999998888864 999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q psy6067 412 GTLLAYTIVALSVLILRYSED 432 (584)
Q Consensus 412 ~~l~~y~l~~la~i~~r~~~~ 432 (584)
+.++.|.+++++++++|+..+
T Consensus 405 ~tl~~w~~i~~~~i~~R~a~~ 425 (554)
T KOG1286|consen 405 GTLFAWTLVALSHLRFRYAMK 425 (554)
T ss_pred HHHHHHHHHHHHHeeeeeccc
Confidence 999999999999999999865
No 23
>KOG1287|consensus
Probab=100.00 E-value=2.4e-50 Score=421.21 Aligned_cols=428 Identities=25% Similarity=0.405 Sum_probs=360.7
Q ss_pred CCCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcCh-H-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCcee
Q psy6067 26 SGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGP-S-VVISFIIAALASALSGLCYVEFASRISKSGSAYN 103 (584)
Q Consensus 26 ~~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~-~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~ 103 (584)
..++.+++|++++++.+.+.+++++|+|+|..+..+. .++|+ + ++..|+.+++++++.++||+||++.+|++||+|.
T Consensus 4 ~~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl-~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~a 82 (479)
T KOG1287|consen 4 SGEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVL-ANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYA 82 (479)
T ss_pred CcccccccceeeeecceeEEEEeeEecccccCcHHHH-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchh
Confidence 3455678999999999999999999999999999987 55665 4 8888999999999999999999999999999999
Q ss_pred ehHHHhchhHHHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHH-HHHHhcCCCCCccccccCCCCCCchhhHHHHHHHH
Q psy6067 104 YTYLSIGEFAAYIIGWNLELFIEVQA-FCIEFSRIREAAALFRL-LKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVM 181 (584)
Q Consensus 104 ~~~~~lG~~~g~~~g~~~~l~~~~~~-a~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~ 181 (584)
|+.+++||.+||...|.-++...... +. .+..+++| ++..++ .-+.+......++.+++.
T Consensus 83 yi~~afg~~~aF~~~wvs~l~~~p~~~Ai-------~altF~~Y~l~p~fp-----------~c~~p~~~~~lla~~~l~ 144 (479)
T KOG1287|consen 83 YISEAFGPFPAFLFLWVSLLIIVPTSAAI-------IALTFATYLLKPFFP-----------LCDVPRVASKLLAAALLV 144 (479)
T ss_pred hHHHHhccchhHHHHHHHHHHHhhhHHHH-------HHHHHHHHhhcccCC-----------CCCCchHHHHHHHHHHHH
Confidence 99999999999999998887665555 55 88888888 455554 111234556788999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc---CCCcccccCCCccccccCCCCCCCCcchHHHHHHHHH
Q psy6067 182 LMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMN---PRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAK 258 (584)
Q Consensus 182 l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~ 258 (584)
+++.+|+.++|+..++|.+++..|++.+.++++.|+.... .+++..++ ++ ....+...+..++..
T Consensus 145 ~lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~---f~---------g~~~~~g~i~lafys 212 (479)
T KOG1287|consen 145 LLTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSE---FE---------GSDTDVGNIALAFYS 212 (479)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccc---cc---------cCcCchHHHHHHHHH
Confidence 9999999999999999999999999999999999998432 23222211 11 011123457788889
Q ss_pred HHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHH-HHcChhHHHHHHH
Q psy6067 259 CFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIF-DSLGWPVMKWLVT 337 (584)
Q Consensus 259 ~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~-~~~~~~~~~~li~ 337 (584)
..|+|.|||.....+||+|||+||+|||+.+++.+++++|+++.++...+++.|+..+++.+..-+ +..+|.+. +++.
T Consensus 213 glfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip 291 (479)
T KOG1287|consen 213 GLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIP 291 (479)
T ss_pred hhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHH
Confidence 999999999999999999999999999999999999999999999999999999886665555555 44555555 9999
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q psy6067 338 VGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAY 417 (584)
Q Consensus 338 ~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~l~~y 417 (584)
+.+.++++++.|+.++..||.++++||+|++|+.|++.|++..+|..++++....+++..++.+++++++..++...+.+
T Consensus 292 ~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~ 371 (479)
T KOG1287|consen 292 FSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFR 371 (479)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHH
Q psy6067 418 TIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQY 497 (584)
Q Consensus 418 ~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (584)
.+..++.+++|+|||
T Consensus 372 ~l~~~gll~lR~k~p----------------------------------------------------------------- 386 (479)
T KOG1287|consen 372 GLSMAGLLWLRWKHP----------------------------------------------------------------- 386 (479)
T ss_pred HHHHHHHHHHHhhCC-----------------------------------------------------------------
Confidence 999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHhhhcc
Q psy6067 498 ATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDI----STWVRFVIWLVIGFGIYFTYGI 573 (584)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~y~~~~~ 573 (584)
+.+||+|+|. ..|.+-++.|++++..--. .........++.|+.+|+....
T Consensus 387 -----------------------~~~rPiKvpl--~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~ 441 (479)
T KOG1287|consen 387 -----------------------PLPRPIKVPL--FIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIH 441 (479)
T ss_pred -----------------------CCCCCEeeee--ehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEE
Confidence 4678899998 7888888888888753322 1234455666788888877654
Q ss_pred cc
Q psy6067 574 SH 575 (584)
Q Consensus 574 ~~ 575 (584)
++
T Consensus 442 ~~ 443 (479)
T KOG1287|consen 442 WK 443 (479)
T ss_pred ec
Confidence 33
No 24
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=2.4e-49 Score=435.14 Aligned_cols=377 Identities=22% Similarity=0.318 Sum_probs=306.0
Q ss_pred CCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcCh-H-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceee
Q psy6067 27 GSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGP-S-VVISFIIAALASALSGLCYVEFASRISKSGSAYNY 104 (584)
Q Consensus 27 ~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~-~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~ 104 (584)
+++++++|+++.++++++++++++|+|+|..++.+. ..+|+ + .+++|++++++.++.+++++||++++|++||.|.|
T Consensus 35 ~~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~-~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~ 113 (501)
T TIGR00911 35 GEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVL-KNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNY 113 (501)
T ss_pred ccccccCccccHhHhhHhheeceEEeeEeecHHHHH-hhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhh
Confidence 355689999999999999999999999999999865 55675 3 56889999999999999999999999999999999
Q ss_pred hHHHhchhHHHHHHHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHH-HhcCCCCCccccccCCCCCCchhhHHHHHHHHH
Q psy6067 105 TYLSIGEFAAYIIGWNLELFI-EVQAFCIEFSRIREAAALFRLLKQ-LESGGGETSTLTTDRYSFLSTYPDFIAAGIVML 182 (584)
Q Consensus 105 ~~~~lG~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l 182 (584)
+++.+||.+||+.+|..++.. ....+. .+...++|+.. .++ ..+ .+.....+++++++++
T Consensus 114 ~~~~~g~~~gf~~gw~~~~~~~~~~~a~-------~a~~~~~y~~~~~~~---------~~~--~~~~~~~~i~~~~i~~ 175 (501)
T TIGR00911 114 ILEVFGPLLAFLRLWIELLVIRPGSQAV-------NALNFAIYILTPVFP---------DCE--VPEWAIRLVAVLCVLL 175 (501)
T ss_pred HHhHhCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcC---------CCC--CchHHHHHHHHHHHHH
Confidence 999999999999999877533 334444 56666666533 232 000 0122234677778889
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccc-cCCCccccccCCCCCCCCcchHHHHHHHHHHHH
Q psy6067 183 MSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIR-KEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFF 261 (584)
Q Consensus 183 ~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~ 261 (584)
.+.+|++|+|..++++.+++.++++.++++++.++.....++.... +...++ ..+.+..++..++..++|
T Consensus 176 ~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~a~~~~~~ 246 (501)
T TIGR00911 176 LTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFE---------GTETSAGGIVLAFYSGIW 246 (501)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccC---------CCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999988887777653322211110 010110 001235678888999999
Q ss_pred hhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHH-HHcChhHHHHHHHHHH
Q psy6067 262 GFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIF-DSLGWPVMKWLVTVGS 340 (584)
Q Consensus 262 af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~-~~~~~~~~~~li~~~~ 340 (584)
+|.|+|.+++++||+|||+||+||++..++.++.++|++..++.....|.+++.++.+....+ +...+ +...++.+..
T Consensus 247 af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~ 325 (501)
T TIGR00911 247 AYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALV 325 (501)
T ss_pred HHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888888765544333333 33333 5567788888
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Q psy6067 341 LFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIV 420 (584)
Q Consensus 341 ~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~l~~y~l~ 420 (584)
.++.+++.++.+.+.||+++++||||.+|++|+|+|||+++|+++++++.+++.+.....++..+.++.+....+.|++.
T Consensus 326 ~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~ 405 (501)
T TIGR00911 326 GLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALA 405 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998877777788888889999999999999
Q ss_pred HHHHHHHhhccC
Q psy6067 421 ALSVLILRYSED 432 (584)
Q Consensus 421 ~la~i~~r~~~~ 432 (584)
.++++++|+|+|
T Consensus 406 ~~a~i~lR~~~p 417 (501)
T TIGR00911 406 VAGLLWLRYKRP 417 (501)
T ss_pred HHHHHheeccCC
Confidence 999999999875
No 25
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.1e-48 Score=419.49 Aligned_cols=356 Identities=21% Similarity=0.249 Sum_probs=292.5
Q ss_pred cCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHH
Q psy6067 36 LGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAY 115 (584)
Q Consensus 36 ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~ 115 (584)
+++++++++.+|+|+|+|+|..++.+. +.+||.++++|+++++..++.+++++|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~-~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAA-LVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 578999999999999999999999865 7789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhH
Q psy6067 116 IIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSEST 195 (584)
Q Consensus 116 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~ 195 (584)
..||.++..+....++ ......++....++ . .......+.++++++.+.+|++|+|..+
T Consensus 80 ~~gw~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~~~ln~~Gv~~~~ 138 (410)
T PRK11021 80 VTGWLFLSVIPVGLPA-------ALQIAAGFGQALFG---------W-----SSWQLLLAELLTLALLWLLNLRGASSSA 138 (410)
T ss_pred HHHHHHHHHHHhhHHH-------HHHHHHHHHHHHcC---------C-----CCchHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999877666655 44555566666655 0 0122345667777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhccccc
Q psy6067 196 RLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEE 275 (584)
Q Consensus 196 ~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~~E 275 (584)
|++.++....+..++.+...+ ..+..++. + ....+.++.++..++..++|+|.|+|.+++++||
T Consensus 139 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 202 (410)
T PRK11021 139 NLQTVIALLIVALVVAIWWAG--DIKPADIP------F--------PAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASE 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCchhcCC------C--------CCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHh
Confidence 999988765543332221111 11111110 0 0122346778899999999999999999999999
Q ss_pred ccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccccc-CcCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhch
Q psy6067 276 SKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQ-DAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFP 354 (584)
Q Consensus 276 ~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~-~~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~ 354 (584)
+|||+||+||+++.+++++.++|++..++.....+.++. .++.|..+++++..+++...++.+..+++.+++.++++.+
T Consensus 203 ~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~ 282 (410)
T PRK11021 203 FKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQS 282 (410)
T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887766665443 3456777777777666677788888899999999999999
Q ss_pred hHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6067 355 LPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAV-----FKLDQLVDMLSIGTLLAYTIVALSVLILRY 429 (584)
Q Consensus 355 ~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~-----~~~~~l~~~~s~~~l~~y~l~~la~i~~r~ 429 (584)
.+|++++|||||.+|++|+|+| |+++|+++++++.+++.+..++ .+++.+.+..+...++.|.+.+++.+++++
T Consensus 283 ~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~ 361 (410)
T PRK11021 283 FARLVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLK 361 (410)
T ss_pred HHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999 7899999999998887766544 268889999999999999999999999986
Q ss_pred c
Q psy6067 430 S 430 (584)
Q Consensus 430 ~ 430 (584)
+
T Consensus 362 ~ 362 (410)
T PRK11021 362 G 362 (410)
T ss_pred c
Confidence 4
No 26
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=3.3e-48 Score=422.52 Aligned_cols=424 Identities=16% Similarity=0.225 Sum_probs=345.9
Q ss_pred cccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCc-CCceeehHHHhch
Q psy6067 34 RVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKS-GSAYNYTYLSIGE 111 (584)
Q Consensus 34 r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~-GG~y~~~~~~lG~ 111 (584)
|++++++++++++|+++|+|+|..++..+ ..+||. .+++|+++++.+++.+++++||++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~-~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMA-AGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 68999999999999999999999999876 567885 78899999999999999999999999996 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhh
Q psy6067 112 FAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGV 191 (584)
Q Consensus 112 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~ 191 (584)
..||+.||.+|+++...... ++.....++..+++. ... ....+...++.+++++.+.+|++|+
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~-------~~~~~~~~~~~~~p~---------~~~-~~~~~~~~~~~~~~~~~~~ln~~Gv 142 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVA-------YATLLFSTLGYFFPI---------FGG-GNNPPSIIGASVLLWCVHFLVLRGV 142 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccc---------ccC-CCcHHHHHHHHHHHHHHHHHHHhCH
Confidence 99999999999998887777 666666666666551 100 0112334556667778899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhc
Q psy6067 192 SESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIAT 271 (584)
Q Consensus 192 r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~ 271 (584)
|..+++|.+++..|+++++++++.++...+.+++.... .++ ...+...+..+.++..++...+|+|.|+|.++.
T Consensus 143 ~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 216 (468)
T TIGR03810 143 EGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTNDF---WGN---ANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASM 216 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCccc---ccc---ccccCccccHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 99999999999999999888888776543333222110 000 000000122355677888899999999999999
Q ss_pred ccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-CCc-HHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q psy6067 272 TGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EAP-FPHIFDSLGWPVMKWLVTVGSLFALLTAMF 349 (584)
Q Consensus 272 ~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-~~p-~~~~~~~~~~~~~~~li~~~~~~s~~~s~~ 349 (584)
++||.|| +||+||++..++..+.++|++..+......|.+++.+ ++| ..+++++..+++...++.++++++.+++.+
T Consensus 217 ~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~ 295 (468)
T TIGR03810 217 LSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWL 295 (468)
T ss_pred hHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Confidence 9999998 7999999999999999999999999998888877643 455 677778888899999999999999999999
Q ss_pred HhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHH
Q psy6067 350 GALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-----KLDQLVDMLSIGTLLAYTIVALSV 424 (584)
Q Consensus 350 ~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-----~~~~l~~~~s~~~l~~y~l~~la~ 424 (584)
+++...+|++++|||||.+|++|+|+| |+|+|+++++++.+++.++.+.. .++.+.++++...++.|.+.+++.
T Consensus 296 ~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~ 374 (468)
T TIGR03810 296 SWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQ 374 (468)
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 78999999999988886655432 488899999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHHHHHHH
Q psy6067 425 LILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTLLG 504 (584)
Q Consensus 425 i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (584)
+++|+|+++
T Consensus 375 ~~l~~~~~~----------------------------------------------------------------------- 383 (468)
T TIGR03810 375 VKLSWRGGQ----------------------------------------------------------------------- 383 (468)
T ss_pred HHHHHhcCC-----------------------------------------------------------------------
Confidence 999987531
Q ss_pred HHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6067 505 LVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGIS 574 (584)
Q Consensus 505 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 574 (584)
+..+++| ++.+.++.+.+++++...+++......+.+++|+.+|...+++
T Consensus 384 ----------------~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 384 ----------------ERGRRKQ----LLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred ----------------ccchhhh----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1112222 4788999999999999999988888888888888888654443
No 27
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=1.4e-48 Score=449.03 Aligned_cols=442 Identities=16% Similarity=0.152 Sum_probs=349.5
Q ss_pred ccccccCHHHHHHHH-hhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhc-ccCcCCceeehHH
Q psy6067 31 KLARVLGLTDLTLLG-IGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASR-ISKSGSAYNYTYL 107 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~-ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~-~P~~GG~y~~~~~ 107 (584)
..+|++|+++.+++. +++++|+|+|.+++++. ..+|.. ++++|+++++++++++++|+|++++ +|++||.|.|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vv-g~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIV-GQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 456899999999996 99999999999999987 667765 8999999999999999999999998 9999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHH
Q psy6067 108 SIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALI 187 (584)
Q Consensus 108 ~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in 187 (584)
++||.+|+.+||.+++++.++.++ ++.++++|+..+++..+..... . ......+++.+++++++++|
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~-------~~~Gf~eyl~~lf~~~~~~~~~----~--~~~~~~iia~i~l~ll~~In 218 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAM-------YVVGFAETVLDLLRENGSKIMV----D--PINDIRIYGTVTVVVLLGIS 218 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccccccc----C--ccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999988611110000 0 01123577888899999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhh
Q psy6067 188 SWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFD 267 (584)
Q Consensus 188 ~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e 267 (584)
++|+|+..|+|.++++++++.++.+++.++..............-...+. .+..+..+.+..++...+...+++|+|+|
T Consensus 219 ~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~-~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ 297 (953)
T TIGR00930 219 FAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFS-ENFIPGIPGPEGGFFSLFGIFFPSVTGIL 297 (953)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhh-hccCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887766542211000000000000000 00000112223346666677788999999
Q ss_pred hhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-CC------------------cHHHH----H
Q psy6067 268 CIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EA------------------PFPHI----F 324 (584)
Q Consensus 268 ~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-~~------------------p~~~~----~ 324 (584)
+.++++||+|||+|++|||++.++++++++|++..+++..+.+.+.... +. |.... +
T Consensus 298 agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~ 377 (953)
T TIGR00930 298 AGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNL 377 (953)
T ss_pred HHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchH
Confidence 9999999999999999999999999999999999998888777554321 00 11000 1
Q ss_pred HH-cChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccc--hhhhccCCCCCcchHHHHHHHHHHHHHHHHhC
Q psy6067 325 DS-LGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLY--DCFSYVSPRTKTPVLSSLLTGALTAVLSAVFK 401 (584)
Q Consensus 325 ~~-~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP--~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~ 401 (584)
.. ........++.++++++++++.+++++++||++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++.+
T Consensus 378 ~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~ 457 (953)
T TIGR00930 378 QVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAE 457 (953)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 11 1112356789999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccc
Q psy6067 402 LDQLVDMLSIGTLLAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSAL 481 (584)
Q Consensus 402 ~~~l~~~~s~~~l~~y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (584)
++.+..+.+.+++++|++++++++++|++++.
T Consensus 458 l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p------------------------------------------------ 489 (953)
T TIGR00930 458 LNTIAPIISNFFLASYALINFSCFHASLLRSP------------------------------------------------ 489 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------------------------------------------------
Confidence 99999999999999999999999999877631
Q ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy6067 482 TGGPVPTSDCTSALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWL 561 (584)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (584)
++++.||. ..++++++|++.|+++++.. .|...++++
T Consensus 490 ---------------------------------------~~RP~fk~-~~~~~sllG~l~c~~lmf~i---~w~~ali~~ 526 (953)
T TIGR00930 490 ---------------------------------------GWRPRFKY-YHWWLSLLGASLCCAIMFLI---SWWAALVAM 526 (953)
T ss_pred ---------------------------------------CCCCcccc-chHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 23334554 46789999999999999887 456677788
Q ss_pred HHHHHHHhhhccccccc
Q psy6067 562 VIGFGIYFTYGISHSKQ 578 (584)
Q Consensus 562 ~~~~~~y~~~~~~~~~~ 578 (584)
++++++|+++.+++.+.
T Consensus 527 ~i~~~ly~~~~~~~~~~ 543 (953)
T TIGR00930 527 VIALFLYKYVTYKKPDV 543 (953)
T ss_pred HHHHHHHHHhhccCCCC
Confidence 88888888887776543
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=6.5e-46 Score=406.33 Aligned_cols=387 Identities=20% Similarity=0.223 Sum_probs=297.4
Q ss_pred CCCccccccccCHHHHHHHHhhhhh-hhhHhHhHHHhHhhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCcee
Q psy6067 26 SGSREKLARVLGLTDLTLLGIGATL-GVGVYVLAGSVAKNQAGP-SVVISFIIAALASALSGLCYVEFASRISKSGSAYN 103 (584)
Q Consensus 26 ~~~~~~l~r~ls~~~~~~l~ig~~i-G~gif~~~~~v~~~~aG~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~ 103 (584)
.++++++||+++.++.++++++.+. ..|++...+.. ...+|| ..+++|++++++.++.+++++||++++|++||.|.
T Consensus 4 ~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~ 82 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYG-LSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYF 82 (482)
T ss_pred cCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHh-hhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 4456679999999999999999652 26777766553 367888 58999999999999999999999999999999999
Q ss_pred ehHHHhc----hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHH
Q psy6067 104 YTYLSIG----EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGI 179 (584)
Q Consensus 104 ~~~~~lG----~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 179 (584)
|++|.+| +..||++||.+++++....++ .....++++...+. ...+. + +....+.....+.+++
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~-------~~~~~~~~~~~~~~-~~~~~---~-~~~~~~~~~~~i~~~~ 150 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTAS-------TDLSVAQLILGIVS-LTTPG---R-EYIPTRWHIFGIMIGI 150 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-hcCCC---C-CccccCchhhhhHHHH
Confidence 9999987 567899999999999998888 88888888776554 11110 0 0000122234566677
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHH
Q psy6067 180 VMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKC 259 (584)
Q Consensus 180 l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~ 259 (584)
+++.+.+|++|+|..+++++++.+++++.++++.+..+...+.+ .+.. +..+++.. .+.+++.+.++ +++.++...
T Consensus 151 ~~~~~~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~-~~~~-~~~~~~~~-~~~~g~~~~g~-~~~~~~~~~ 226 (482)
T TIGR00907 151 HLIHALINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPK-FNDG-KFVFTNFN-NSTGGWKPGGF-AFLLGLLNP 226 (482)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-CCCh-hhhheeee-CCCCCcCCCch-hhhhhhhhh
Confidence 78899999999999999999999998888776555544432211 1111 11111111 11123445555 466777788
Q ss_pred HHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc-ccc-Cc--CCcHHHHHHHc-ChhHHHH
Q psy6067 260 FFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPY-YEQ-DA--EAPFPHIFDSL-GWPVMKW 334 (584)
Q Consensus 260 ~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~-~~~-~~--~~p~~~~~~~~-~~~~~~~ 334 (584)
.|+|.|+|.+++++||+|||+||+||++..++.+..+++++..+......++ ++. ++ ++|+.+.+.+. +.++...
T Consensus 227 ~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~ 306 (482)
T TIGR00907 227 AWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAI 306 (482)
T ss_pred HHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHH
Confidence 9999999999999999999999999999999988877666655555444432 222 22 25888887764 6557778
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccc--hhhhccCCCCCcchHHHHHHHHHHHHHHHHh-----CHHHHHH
Q psy6067 335 LVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLY--DCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-----KLDQLVD 407 (584)
Q Consensus 335 li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP--~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-----~~~~l~~ 407 (584)
++.+..+++.+++.++.+++.||++++|||||.+| ++|+|+|||+++|++|++++.+++.++.++. .++.+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~ 386 (482)
T TIGR00907 307 FLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFS 386 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 88888999999999999999999999999999999 9999999888999999999999988776654 5889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy6067 408 MLSIGTLLAYTIVALSVLILRY 429 (584)
Q Consensus 408 ~~s~~~l~~y~l~~la~i~~r~ 429 (584)
+.+...++.|++..++.++.|+
T Consensus 387 ~~~~~~~i~y~~~~~~~l~~~~ 408 (482)
T TIGR00907 387 VCTVALDVSYVIPIICKLAKGR 408 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998887765443
No 29
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=4.1e-45 Score=398.91 Aligned_cols=386 Identities=22% Similarity=0.281 Sum_probs=298.3
Q ss_pred CCCccccccccCHHHHHHHHhhhh-hhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceee
Q psy6067 26 SGSREKLARVLGLTDLTLLGIGAT-LGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNY 104 (584)
Q Consensus 26 ~~~~~~l~r~ls~~~~~~l~ig~~-iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~ 104 (584)
.++++++||++|.++.++++++.+ ++.|++...+... ..+||..+++|+++++..++.+++++||++++|++||.|+|
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~-~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~ 83 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGY-GFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQW 83 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Confidence 456678999999999999999986 8999999998855 67899999999999999999999999999999999999999
Q ss_pred hHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCC--CCCCchhhHHHHHHHHH
Q psy6067 105 TYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRY--SFLSTYPDFIAAGIVML 182 (584)
Q Consensus 105 ~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~ii~~~~l~l 182 (584)
+++.+||.+||++||.+++++....+. .......++..+.++.... ..+.+. +........++.+++++
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAA-------AAIALQVVLPNIWSGFQII--GEDPTLTSPSGAANAVLLGSVLLVL 154 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhc--ccCccccCCCchHHHHHHHHHHHHH
Confidence 999999999999999999999877766 6666555554433201000 000000 00012345677778888
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHh
Q psy6067 183 MSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFG 262 (584)
Q Consensus 183 ~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~a 262 (584)
.+.+|++|+|...+++++...++++.++++++.++...+.+ +...++.. .++..+....+++.+....+|+
T Consensus 155 ~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~-----~~~~f~~~----~~~~~~~~~~~~~~~~~~~~~~ 225 (475)
T TIGR03428 155 TTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRG-----PGVVFDTS----VTGASPGYYGAFLVSGLMAAYV 225 (475)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeeecC----CCCCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777766655433211 11111110 0111122234567778888999
Q ss_pred hhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccc--cCcCCcHHHHHHH-cChhHHHHHHHHH
Q psy6067 263 FVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE--QDAEAPFPHIFDS-LGWPVMKWLVTVG 339 (584)
Q Consensus 263 f~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~--~~~~~p~~~~~~~-~~~~~~~~li~~~ 339 (584)
|.|+|.+++++||+|||+||+||+++.++.++.++|.+..+......|+.+ ..++++...++.+ .+.++.. .+...
T Consensus 226 f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~ 304 (475)
T TIGR03428 226 MVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVD 304 (475)
T ss_pred hcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHH
Confidence 999999999999999999999999999999999888888887776666422 1122223333433 4545443 44566
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhcCccc--hhhhccCCCCCcchHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHH
Q psy6067 340 SLFALLTAMFGALFPLPRILYAMSLDGLLY--DCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-----KLDQLVDMLSIG 412 (584)
Q Consensus 340 ~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP--~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-----~~~~l~~~~s~~ 412 (584)
.+++.+++.++.+.+.||+++++||||.+| ++|+|+|||+++|++|+++..+++.++.++. .|+.+.+++++.
T Consensus 305 ~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~ 384 (475)
T TIGR03428 305 VAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVL 384 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999 5899999999999999999999998777753 378899999999
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy6067 413 TLLAYTIVALSVLILRYSE 431 (584)
Q Consensus 413 ~l~~y~l~~la~i~~r~~~ 431 (584)
..+.|.+..+..+..|+|+
T Consensus 385 ~~~~Y~~~~~~~l~~~~~~ 403 (475)
T TIGR03428 385 IYLAYLLVTVPLLLRRLRG 403 (475)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999998888877653
No 30
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=1.8e-42 Score=378.19 Aligned_cols=371 Identities=16% Similarity=0.210 Sum_probs=273.6
Q ss_pred cccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHH-HHHHHHHHHhhhcccCcCCceeehHHHhchh
Q psy6067 34 RVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALAS-ALSGLCYVEFASRISKSGSAYNYTYLSIGEF 112 (584)
Q Consensus 34 r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~-l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~ 112 (584)
||++.++++++.+..+++.. ..+ ..+..|+.++..|++++++. ++.+++++||++++|++||.|.|++|++||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~--~~~---~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLR--GLP---AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhh--cch---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 46999999999988775433 223 22457888999999999876 5799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhh
Q psy6067 113 AAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVS 192 (584)
Q Consensus 113 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r 192 (584)
+||..+|.+|+++.+..+. .....+..+....+ ... ..+ ..+........+.++++++.+.+|++|+|
T Consensus 76 ~gf~~gw~~w~~~~~~~p~-------~~~~~~~~~~~~~~-~~~---~~~-~~~~~~~~~~~~~l~~~~~~~~in~~gv~ 143 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPT-------VLTFGAVSLAFIGP-EAT---VDE-SLAGNKLYVLVSVLFVYWLATFIALRGVA 143 (474)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC-ccc---cCc-ccccccHHHHHHHHHHHHHHHHHHhcChH
Confidence 9999999999998776665 33333333332222 100 000 00011122234556666778899999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCc--chHHHHHHHHHHHHhhhhhhhh
Q psy6067 193 ESTRLNSVFTFL-NLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPF--GLNGIIVGAAKCFFGFVGFDCI 269 (584)
Q Consensus 193 ~~~~~~~~~~~~-~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~i~~~~~af~G~e~~ 269 (584)
..++++++...+ ++++++++++.++.....++....+... ++ ..|+ ++.++..+ ...+|+|.|+|.+
T Consensus 144 ~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~-~~--------~~p~~~~~~~~~~~-~~~~~af~G~e~~ 213 (474)
T TIGR03813 144 AFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRW-DD--------AFPDFTNFDNVVLA-ASIFLFYAGMEMN 213 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCH-HH--------hCCCccccccHHHH-HHHHHHHhchhHh
Confidence 999999887554 4555555555544321111100000000 00 1111 22223322 2457899999999
Q ss_pred hcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCc----HHHHHHHcChhHHHHHHHHHHHHHHH
Q psy6067 270 ATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAP----FPHIFDSLGWPVMKWLVTVGSLFALL 345 (584)
Q Consensus 270 ~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p----~~~~~~~~~~~~~~~li~~~~~~s~~ 345 (584)
+..+||+|||+||+||+++.+..++.++|++..+++..+.|+++...+++ +.+..+..+.++...++.+..+++.+
T Consensus 214 ~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l 293 (474)
T TIGR03813 214 AVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVL 293 (474)
T ss_pred HHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887654433 33444555777888888888889999
Q ss_pred HHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh--------CHHHHHHHHHHHHHHHH
Q psy6067 346 TAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF--------KLDQLVDMLSIGTLLAY 417 (584)
Q Consensus 346 ~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~--------~~~~l~~~~s~~~l~~y 417 (584)
++.++++.+.+|+++++||||.+|++|+|+| |+++|+++++++.+++.++.++. .++.+.++++...++.|
T Consensus 294 ~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y 372 (474)
T TIGR03813 294 AGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMY 372 (474)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 89999999999988765444322 26788999999999999
Q ss_pred HHHHHHHHHHhhccC
Q psy6067 418 TIVALSVLILRYSED 432 (584)
Q Consensus 418 ~l~~la~i~~r~~~~ 432 (584)
++.+++.+++|+|+|
T Consensus 373 ~~~~~a~i~lr~~~~ 387 (474)
T TIGR03813 373 LLMFASAIYLRYSQP 387 (474)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998765
No 31
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-42 Score=375.26 Aligned_cols=379 Identities=32% Similarity=0.522 Sum_probs=323.4
Q ss_pred CCCccccccccCHHH-HHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceee
Q psy6067 26 SGSREKLARVLGLTD-LTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNY 104 (584)
Q Consensus 26 ~~~~~~l~r~ls~~~-~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~ 104 (584)
.+++++++|+++.++ ...+.++.++|.|+|..++..+ ..+ +...++|++++++..+.+++++|+++++|++||.|.|
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~-~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~ 81 (466)
T COG0531 4 SMMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAA-GLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAY 81 (466)
T ss_pred cccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHH-Hhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeee
Confidence 344557789999999 8888999999999999998865 333 5555559999999999999999999999999999999
Q ss_pred hHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHH
Q psy6067 105 TYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMS 184 (584)
Q Consensus 105 ~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~ 184 (584)
+++.+||+.|+.++|.+++.+....+. .+...++++...++..+ ...........++.+++++.+
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 146 (466)
T COG0531 82 AKRALGPRLGFLAGWLYLLAYVIALAA-------IAIGAASYLSYLFPGPG--------LLSIGPLLIILIALALIALLT 146 (466)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCcch--------hhcCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 88989888888887211 000001345678889999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhh
Q psy6067 185 ALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFV 264 (584)
Q Consensus 185 ~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~ 264 (584)
.+|++|+|..++++.+.+.++++.++++.+.++.+.+.++.+.... .. . ......+++.++...+|+|.
T Consensus 147 ~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~-~~-------~---~~~~~~~~~~~~~~~~~~f~ 215 (466)
T COG0531 147 LLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAP-FN-------P---GGGSFGGILAAILLAFFAFT 215 (466)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCC-cc-------c---ccchHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999888665543221110 00 0 11123468888999999999
Q ss_pred hhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcC---CcHHHHHHHcChhHHHHHHHHHHH
Q psy6067 265 GFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAE---APFPHIFDSLGWPVMKWLVTVGSL 341 (584)
Q Consensus 265 G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~---~p~~~~~~~~~~~~~~~li~~~~~ 341 (584)
|+|.+++++||+|||+|++||+++.+++.+.++|++..++.....|+++.... .|..+.+....+.++..++.+..+
T Consensus 216 G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~ 295 (466)
T COG0531 216 GFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILAL 295 (466)
T ss_pred cHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998654433 688888888887899999999999
Q ss_pred HHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHH
Q psy6067 342 FALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-----KLDQLVDMLSIGTLLA 416 (584)
Q Consensus 342 ~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-----~~~~l~~~~s~~~l~~ 416 (584)
.+.+++.+++..+.+|.+++|||||.+|++|+|+|+|+++|+++++++.+++..+.... .++.+.++.+...++.
T Consensus 296 ~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 375 (466)
T COG0531 296 LSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIA 375 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998999999999999999333332 3689999999999999
Q ss_pred HHHHHHHHHHHhhccC
Q psy6067 417 YTIVALSVLILRYSED 432 (584)
Q Consensus 417 y~l~~la~i~~r~~~~ 432 (584)
|.+.+++.+++|++++
T Consensus 376 y~~~~~~~~~~~~~~~ 391 (466)
T COG0531 376 YLLVALALLVLRRKKP 391 (466)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 9999999999999865
No 32
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1e-41 Score=373.65 Aligned_cols=369 Identities=15% Similarity=0.165 Sum_probs=271.4
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHH-HHHHHHHHHHhhhccc-CcCCceeehHHHhc
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALA-SALSGLCYVEFASRIS-KSGSAYNYTYLSIG 110 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~-~l~~al~~aEL~s~~P-~~GG~y~~~~~~lG 110 (584)
+|+++.++++++.++.+. +++..+. .+..|...+..+++++++ .++.+++++||++++| ++||.|.|++|++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~---~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT---FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 577999999999998875 3454442 246788888888888887 6789999999999997 89999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 111 EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 111 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
|++||.++|.+|+.+....+. ..........+... . + .. +.......+..++++++.+.+|++|
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~-------~~~~~~~~~~y~~~-~--~----~~--~~~~~~~~i~~l~i~~~~t~~n~~G 141 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIP-------MIYFILGALSYILK-F--P----AL--NEDPIIKFIAALIIFWALAFSQFGG 141 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc-C--c----hh--ccCcHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999987765544 32222333333332 0 0 00 0112233445566777889999999
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcc-hHHHHHHHHHHHHhhhhhhh
Q psy6067 191 VSESTRLNSVFTFLNLGT-VVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFG-LNGIIVGAAKCFFGFVGFDC 268 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~-ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~i~~~~~af~G~e~ 268 (584)
.|..++++++.....++. .+++++.+......++..... . +.+++.|+. -.+.+..+....|+|.|+|.
T Consensus 142 ~k~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~--~-------~~~~~~p~~~~~~~~~~~~~~~faf~G~E~ 212 (507)
T TIGR00910 142 TKRTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIE--I-------DSHAFFPDFSKVGTLVVFVAFIGAYMGVEA 212 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccC--C-------cHHhcCCCcccccHHHHHHHHHHHHhcHHH
Confidence 999999998866544443 344443333321111110000 0 000111110 01234444556899999999
Q ss_pred hhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHH----HHHHcC--hhHHHHHHHHHHHH
Q psy6067 269 IATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPH----IFDSLG--WPVMKWLVTVGSLF 342 (584)
Q Consensus 269 ~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~----~~~~~~--~~~~~~li~~~~~~ 342 (584)
+++++||+|||+||+||+++.+++++.++|.+..+.+...+|+++...+++... .....+ .++...++.+..++
T Consensus 213 ~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 292 (507)
T TIGR00910 213 SASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAF 292 (507)
T ss_pred HHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888888887654443333 233333 35677788888999
Q ss_pred HHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh---------CHHHHHHHHHHHH
Q psy6067 343 ALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF---------KLDQLVDMLSIGT 413 (584)
Q Consensus 343 s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~---------~~~~l~~~~s~~~ 413 (584)
+.+++.++++.+.+|+++++||||.+|++|+|+| |+++|+++++++.+++.++.++. .++.+.++++..+
T Consensus 293 ~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~ 371 (507)
T TIGR00910 293 GVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIY 371 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 88999999999999887654331 2556778889999
Q ss_pred HHHHHHHHHHHHHHhhccC
Q psy6067 414 LLAYTIVALSVLILRYSED 432 (584)
Q Consensus 414 l~~y~l~~la~i~~r~~~~ 432 (584)
++.|++..++++++|+|+|
T Consensus 372 ~i~Y~l~~~a~i~lr~k~p 390 (507)
T TIGR00910 372 LCAYFLFFIGYFVLILKHP 390 (507)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999875
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=1.1e-45 Score=404.20 Aligned_cols=371 Identities=25% Similarity=0.446 Sum_probs=306.4
Q ss_pred HHHHHhhhhhhhhHhHhHHHhHhhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHH
Q psy6067 41 LTLLGIGATLGVGVYVLAGSVAKNQAGP-SVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGW 119 (584)
Q Consensus 41 ~~~l~ig~~iG~gif~~~~~v~~~~aG~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~ 119 (584)
++++++++++|.|+|...+... ..+|+ +.++++++++++.++.+.+++|+++++|++||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~-~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAI-AAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHH-HhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 3567899999999999999866 66777 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH--hcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHH
Q psy6067 120 NLELFIEVQAFCIEFSRIREAAALFRLLKQL--ESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRL 197 (584)
Q Consensus 120 ~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~ 197 (584)
.+++.++...+. +......+++.. +++. + .. ..+..+++.++++++..+|++|+|..+++
T Consensus 81 ~y~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~-------~~--~~~~~~~~~i~~~~~~~l~~~gv~~~~~~ 142 (478)
T PF00324_consen 81 AYWLSYIAAIAA-------EATAAGSFLQFWGYFPGL--P-------ST--WVWGILIAIIFILLITLLNLFGVRVSGKI 142 (478)
T ss_pred HHHHHHHHHHHh-------hhhhhhhhhccccccccc--c-------cc--ccccchhhhhhhhhhhhhhhhhhhccchH
Confidence 999999999988 877777666655 2200 0 00 01111457788888999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhh-cc-cccCCC-----cccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhh
Q psy6067 198 NSVFTFLNLGTVVVIVGSG-LF-KMNPRN-----WAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIA 270 (584)
Q Consensus 198 ~~~~~~~~l~~ll~~~i~~-~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~ 270 (584)
+.++..++++.++.+++.+ +. ..+.++ +..+.. ..+...+... .....++.+++.++..++++|.|+|.++
T Consensus 143 ~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~a 220 (478)
T PF00324_consen 143 EFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGS-FANNFPPGFT-DPSGGGFSGFFAALVFAFFAFVGFESIA 220 (478)
T ss_pred HHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccc-cccccccccc-cccccchhHHHHhhhhhhcccccccccc
Confidence 9999999999999888888 32 111111 111111 1111111100 1122347889999999999999999999
Q ss_pred cccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcC------CcHHHHHHHcChhHHHHHHHHHHHHHH
Q psy6067 271 TTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAE------APFPHIFDSLGWPVMKWLVTVGSLFAL 344 (584)
Q Consensus 271 ~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~------~p~~~~~~~~~~~~~~~li~~~~~~s~ 344 (584)
..+||+|||||++||++..+++++.++|++..++.....|+++.... +|+.++.+..++++...+++++.+.++
T Consensus 221 ~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~ 300 (478)
T PF00324_consen 221 ILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISA 300 (478)
T ss_pred cccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhh
Confidence 99999999999999999999999999999999999999998875321 489999999999999999999999999
Q ss_pred HHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHH
Q psy6067 345 LTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFK------LDQLVDMLSIGTLLAYT 418 (584)
Q Consensus 345 ~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~------~~~l~~~~s~~~l~~y~ 418 (584)
+++.++.+++.||++++|||||.+|+++.+.++|+|+|++|++++.+++.+..+... ++.+.++.++..++.|.
T Consensus 301 ~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (478)
T PF00324_consen 301 FSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYI 380 (478)
T ss_pred hhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHH
Confidence 999999999999999999999999966666667999999999999999988776543 56678899999999999
Q ss_pred HHHHHHHHHhhccC
Q psy6067 419 IVALSVLILRYSED 432 (584)
Q Consensus 419 l~~la~i~~r~~~~ 432 (584)
+.+++.+++|++.+
T Consensus 381 ~~~~s~~~~r~~~~ 394 (478)
T PF00324_consen 381 LINISYIRFRKKFK 394 (478)
T ss_pred hhhhhhhhhhhhhc
Confidence 99999999998854
No 34
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=1.2e-42 Score=374.90 Aligned_cols=366 Identities=28% Similarity=0.476 Sum_probs=309.8
Q ss_pred cCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHH-HHHHHHHHHhhhcccCcCCceeehHHHhchhHH
Q psy6067 36 LGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALAS-ALSGLCYVEFASRISKSGSAYNYTYLSIGEFAA 114 (584)
Q Consensus 36 ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~-l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g 114 (584)
+|+++.++++++.++|+|++..+ ..+.+|+..++++++++++. ++.+++|+|+++++|++||.|.|+++.+||.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~---~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP---AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH---HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58899999999999999998877 23568888999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhh
Q psy6067 115 YIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSES 194 (584)
Q Consensus 115 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~ 194 (584)
++++|.+++.+....+. ......+++...++ + +....+.....++++++++.+.+|++|.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~-~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~ 140 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLAS-------VASSFASYLLSLFG---------P-DLNPSPWPQFLIAIILILLFTLLNLLGIKLS 140 (426)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHTTTTT---------G-GGTCSHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hcccceeEEEeeccccc-------cccchhhhhhhccc---------c-ccccccchheeeeecccccceEeeechhhhh
Confidence 99999999999999888 88888888877665 1 1111123455778888999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhccc
Q psy6067 195 TRLNSVFTFLNL-GTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTG 273 (584)
Q Consensus 195 ~~~~~~~~~~~l-~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~ 273 (584)
+|++++++.+++ ..++++++.++...+.+..+.. .+ ..+...|+++.+++.++..++|+|.|+|.+++++
T Consensus 141 ~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 211 (426)
T PF13520_consen 141 GKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSL-SF--------SLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLA 211 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH-------------SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGG
T ss_pred hhhhhhhhhhhhhhhhhhheeEEEeeecccccccc-cc--------cccccCCccccchhhHHHHHHhhccccccccccc
Confidence 999999999999 5777777777765544322211 00 0011334455567889999999999999999999
Q ss_pred ccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCC----cHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q psy6067 274 EESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEA----PFPHIFDSLGWPVMKWLVTVGSLFALLTAMF 349 (584)
Q Consensus 274 ~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~----p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~ 349 (584)
||.|| ||+||++..+.+++.++|++..++.....|+++....+ +....++..++++...++.+..+++.+++.+
T Consensus 212 ~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 289 (426)
T PF13520_consen 212 EENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSIN 289 (426)
T ss_dssp GGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHH
T ss_pred ccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccc
Confidence 99776 89999999999999999999999999999998765432 4667778888789999999999999999999
Q ss_pred HhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh------CHHHHHHHHHHHHHHHHHHHHHH
Q psy6067 350 GALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF------KLDQLVDMLSIGTLLAYTIVALS 423 (584)
Q Consensus 350 ~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~------~~~~l~~~~s~~~l~~y~l~~la 423 (584)
+.+.+.+|++++|||||.+|++|+|+| |+++|++++++..+++.++.++. +++.+.+..++...+.|.+..++
T Consensus 290 ~~~~~~sR~l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 368 (426)
T PF13520_consen 290 AFIFGASRLLYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILA 368 (426)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhcchhhcccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999997665432 47899999999999999999999
Q ss_pred HHHHhhccCC
Q psy6067 424 VLILRYSEDG 433 (584)
Q Consensus 424 ~i~~r~~~~~ 433 (584)
++++|+|+|+
T Consensus 369 ~~~~~~~~~~ 378 (426)
T PF13520_consen 369 VLFLRRKRPD 378 (426)
T ss_dssp HHHTHHHSCS
T ss_pred HHHHhhhcCC
Confidence 9999999863
No 35
>KOG1289|consensus
Probab=100.00 E-value=2.6e-42 Score=360.87 Aligned_cols=385 Identities=23% Similarity=0.285 Sum_probs=319.3
Q ss_pred CCCccccccccCHHHHHHHHhhhhhhhhHhHhHHHh--HhhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCce
Q psy6067 26 SGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSV--AKNQAGP-SVVISFIIAALASALSGLCYVEFASRISKSGSAY 102 (584)
Q Consensus 26 ~~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v--~~~~aG~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y 102 (584)
.+.++++||++++++.+.++++.+ |. .....++. ....+|+ ...++|++++++.++++++++|+++.+|.+||.|
T Consensus 40 lgYkqef~R~fs~~s~fg~sFs~~-g~-~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy 117 (550)
T KOG1289|consen 40 LGYKQELKREFSLFSIFGISFSLM-GL-LPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLY 117 (550)
T ss_pred cCCchhhhhhhhHHHHHHHHHHHh-cc-hhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHH
Confidence 357789999999999999998865 11 11111111 1133555 5899999999999999999999999999999999
Q ss_pred eehHHH----hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHH
Q psy6067 103 NYTYLS----IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAG 178 (584)
Q Consensus 103 ~~~~~~----lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~ 178 (584)
.|+... ++|..++++||...+++....++ ..+..++.+..... ... .+.......+.++..+
T Consensus 118 ~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aS-------i~~S~A~~i~~~v~-l~n------p~y~~~~~~~~~v~~a 183 (550)
T KOG1289|consen 118 FWAAVLAPPKYGPFASWVTGWLNYLGQATGVAS-------ITYSLAQLILGAVS-LTN------PNYEPTNYHQFGVFEA 183 (550)
T ss_pred HHHHHhcCcchhhHHHHHHHHHHHHHHHhhchh-------hhHHHHHHHHHHHh-hcC------CCCcccceEeehHHHH
Confidence 999888 45677899999999999999999 89999998888877 222 2222234556788899
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCC-cccccCCCccccccCCCCCCCCcchHHHHHHHH
Q psy6067 179 IVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRN-WAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAA 257 (584)
Q Consensus 179 ~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~ 257 (584)
++++..++|..+.|...+++.+...+.++.+++..|..+...+... ++. ...++.+. .+..+|.+.||. ++.++.
T Consensus 184 i~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns-~~~iF~~f--~N~sgw~~~G~a-fil~f~ 259 (550)
T KOG1289|consen 184 ILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNS-GSFIFGKF--NNYSGWKNNGWA-FILGFF 259 (550)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC-Cceeeecc--cccCCCCcchHH-HHHhhc
Confidence 9999999999999999999999999999999988887777544332 332 22333333 344567777774 888899
Q ss_pred HHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccc---cCc--CCcHHHHHHHcChhHH
Q psy6067 258 KCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE---QDA--EAPFPHIFDSLGWPVM 332 (584)
Q Consensus 258 ~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~---~~~--~~p~~~~~~~~~~~~~ 332 (584)
...|.+.|+|+.+|++||+|||+|+.||||+.++.+..++-.+..+.+..++|+|. .++ ..|+++.+.+..++-.
T Consensus 260 ~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~ 339 (550)
T KOG1289|consen 260 NPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKG 339 (550)
T ss_pred cceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999643 222 4799999988766666
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccc--hhhhccCCCCCcchHHHHHHHHHHHHHHHHh-----CHHHH
Q psy6067 333 KWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLY--DCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-----KLDQL 405 (584)
Q Consensus 333 ~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP--~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-----~~~~l 405 (584)
+..+....+++.+.+..+.+.+.||..|+.||||.+| ++++|+||+.++|.+|+++..+++.++.++. .++.+
T Consensus 340 ~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Al 419 (550)
T KOG1289|consen 340 AVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNAL 419 (550)
T ss_pred eEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6888888889999999999999999999999999999 9999999888999999999999999888876 48999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6067 406 VDMLSIGTLLAYTIVALSVLILRYS 430 (584)
Q Consensus 406 ~~~~s~~~l~~y~l~~la~i~~r~~ 430 (584)
.+.+.++..++|..+....+.++|+
T Consensus 420 fs~a~i~l~~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 420 FSAAAIALFIAYAIPIFCRLFFGRD 444 (550)
T ss_pred HHHHHHHHHHHHHHhHHhheeeccc
Confidence 9999999999999999988888776
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=2.1e-40 Score=363.64 Aligned_cols=380 Identities=13% Similarity=0.176 Sum_probs=270.1
Q ss_pred cccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHH-HHHHHHHHHHhhhcccC-cCCceeehHHHh
Q psy6067 32 LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALA-SALSGLCYVEFASRISK-SGSAYNYTYLSI 109 (584)
Q Consensus 32 l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~-~l~~al~~aEL~s~~P~-~GG~y~~~~~~l 109 (584)
++|++|+++++++++++++|.+.. +.. ...+|+..++.+++++++ .++.+++++||++++|+ +||.|.|+++++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~--~~~--~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS--PRA--FYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch--HHH--HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 478899999999999999997632 322 245788877778777766 57899999999999997 899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 110 GEFAAYIIGWNLELFIEVQAFCIEFSRIREAAA-LFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 110 G~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
||++|+..+|.++.+++..... .... ........++ ....+.+...+.. ......+++++++.+.+.+|.
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~t~vn~ 151 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVS-------TASKIWIPFSTFIFG-KDTTQTWHFLGLN-STQVVGILAVIWMILVTFVAS 151 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcC-cchhhhhhhhccc-chHHHHHHHHHHHHHHHHHHc
Confidence 9999999999988887776544 2221 1111112222 1111101000000 011222455666668899999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhh-ccc-ccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVGSG-LFK-MNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGF 266 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~ 266 (584)
+|+|..++++++.+..++...+++++.. +.. ...++...+.. . .++.+..+.++.. + .+++.++..+.|+|.|+
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~f~G~ 227 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIG-V-SSFVTSPNPAYQS-P-IAVLSFVVFAIFAYGGI 227 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc-H-hhcccCCCCcccc-c-hHHHHHHHHHHHHHHhH
Confidence 9999999999998877765433222211 111 11111100000 0 0000000011111 1 35777888899999999
Q ss_pred hhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-------CCcHHHHHHHc------------
Q psy6067 267 DCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-------EAPFPHIFDSL------------ 327 (584)
Q Consensus 267 e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-------~~p~~~~~~~~------------ 327 (584)
|.+++++||+|||+|++||++..+..++.++|++..+.+....|+++... +.|+. ..+..
T Consensus 228 e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~ 306 (496)
T PRK15238 228 EAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSP 306 (496)
T ss_pred HHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999888887777665432 12222 11211
Q ss_pred -----ChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhC-
Q psy6067 328 -----GWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFK- 401 (584)
Q Consensus 328 -----~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~- 401 (584)
.+++...+++++.+.+.+++.+++.++.+|.+++.++||.+||+|+|+| |+|+|++|++++.++..++.....
T Consensus 307 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~ 385 (496)
T PRK15238 307 AASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSF 385 (496)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 2345566778889999999999999999999999999999999999999 899999999999887776543321
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6067 402 --------LDQLVDMLSIGTLLAYTIVALSVLILRYS 430 (584)
Q Consensus 402 --------~~~l~~~~s~~~l~~y~l~~la~i~~r~~ 430 (584)
|+.+.+++++..++.|++.+++++++||+
T Consensus 386 ~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~~ 422 (496)
T PRK15238 386 GGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKKK 422 (496)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999763
No 37
>KOG2082|consensus
Probab=100.00 E-value=3.5e-33 Score=295.02 Aligned_cols=443 Identities=17% Similarity=0.219 Sum_probs=340.3
Q ss_pred cccccCHHHHHHH-HhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccC-cCCceeehHHH
Q psy6067 32 LARVLGLTDLTLL-GIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISK-SGSAYNYTYLS 108 (584)
Q Consensus 32 l~r~ls~~~~~~l-~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~-~GG~y~~~~~~ 108 (584)
.+-+++.+-.+.+ ++.+++|.-.|.+..++. ..+|.. .++..++++.+.++++.+++.++++--. +||.|..++|.
T Consensus 110 ~a~~mGt~mGVyLPclQnIlGVilFiRLtWvV-G~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRs 188 (1075)
T KOG2082|consen 110 KAARMGTLMGVYLPCLQNILGVILFIRLTWVV-GMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRS 188 (1075)
T ss_pred CccccceeeeeeHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecc
Confidence 3457887777777 899999999999999976 778875 7888889999999999999999999765 89999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH-HhcCCCCCcccc---ccCCCCCCchhhHHHHHHHHHHH
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQ-LESGGGETSTLT---TDRYSFLSTYPDFIAAGIVMLMS 184 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~---~~~~~~~~~~~~ii~~~~l~l~~ 184 (584)
+||.+|-.+|.++.++..+..++ +..+..+.+.. +++ .....-. ..+.........+.+.+++++.+
T Consensus 189 LGPEFGgAVGlcFYLgtT~AaaM-------YIlGaVEi~L~Yi~P--~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~ 259 (1075)
T KOG2082|consen 189 LGPEFGGAVGLCFYLGTTVAAAM-------YILGAVEIFLTYIFP--AAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMA 259 (1075)
T ss_pred cCccccceeeehhhhhhHHHHHH-------HHHhHHHHHHHHHcc--HhhhcCccccccchhhhhcceehHHHHHHHHHH
Confidence 99999999999999999999999 99999998766 444 1111110 00111123445688999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccc-cCCCc---------------ccc-------cCC----------
Q psy6067 185 ALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKM-NPRNW---------------AIR-------KED---------- 231 (584)
Q Consensus 185 ~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~-~~~~~---------------~~~-------~~~---------- 231 (584)
++...|+|.+.++..++..+.++.++.+.+.++-.. +++++ .+. +.+
T Consensus 260 lIVf~GVK~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC 339 (1075)
T KOG2082|consen 260 LIVFVGVKFVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFC 339 (1075)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhC
Confidence 999999999999999999999999998888766531 11100 000 000
Q ss_pred -----------Cc--cccc------------------cCC--CCCCC---------------C---cchHHHHHHHH-HH
Q psy6067 232 -----------IP--RTVR------------------HGG--TGGFA---------------P---FGLNGIIVGAA-KC 259 (584)
Q Consensus 232 -----------~~--~~~~------------------~~~--~~~~~---------------~---~g~~~~~~~i~-~~ 259 (584)
.+ ++.. +.+ .+.+. | .+...-+..+. .-
T Consensus 340 ~~~~~~~~c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIf 419 (1075)
T KOG2082|consen 340 NSNNDSATCDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIF 419 (1075)
T ss_pred CCCCCCcccccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhh
Confidence 00 0000 000 00000 0 11111222233 33
Q ss_pred HHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCC--cHH--HHHHHcChhHHHHH
Q psy6067 260 FFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEA--PFP--HIFDSLGWPVMKWL 335 (584)
Q Consensus 260 ~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~--p~~--~~~~~~~~~~~~~l 335 (584)
+-+.+|+.+.++.+++.|||+|+||.+.+.+++.+..+|+...+.+++++....+.+.. .+. .+...+.+ +.+|+
T Consensus 420 FPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laW-PsPwV 498 (1075)
T KOG2082|consen 420 FPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAW-PSPWV 498 (1075)
T ss_pred ccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecC-CCcee
Confidence 44889999999999999999999999999999999999999999999998844332210 000 00011122 25688
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccc--hhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q psy6067 336 VTVGSLFALLTAMFGALFPLPRILYAMSLDGLLY--DCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGT 413 (584)
Q Consensus 336 i~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP--~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~ 413 (584)
+.++.++|++++.+.++.+++|+|++.|||+.+| +.|++.+ ++|.|.+|++++.+++...+++++++.+..+.++++
T Consensus 499 i~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFF 577 (1075)
T KOG2082|consen 499 IVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFF 577 (1075)
T ss_pred eehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHH
Confidence 8999999999999999999999999999999999 9999998 889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchh
Q psy6067 414 LLAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTS 493 (584)
Q Consensus 414 l~~y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (584)
+++|.+.++++.+...-+
T Consensus 578 LMCY~fVNLaCavqtLLr-------------------------------------------------------------- 595 (1075)
T KOG2082|consen 578 LMCYLFVNLACAVQTLLR-------------------------------------------------------------- 595 (1075)
T ss_pred HHHHHHHhHHHHHHHHhc--------------------------------------------------------------
Confidence 999999999998887665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhcc
Q psy6067 494 ALQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGI 573 (584)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 573 (584)
.|+++++.+|..+ .+..+|+.+|+++|+.. +|...++-..+..++|-+..+
T Consensus 596 -----------------------tPnWRPRfkyyHW---~LSflG~sLC~~iMF~~---SWyyAlvAm~~a~~IYKYiEy 646 (1075)
T KOG2082|consen 596 -----------------------TPNWRPRFKYYHW---SLSFLGASLCLAIMFIS---SWYYALVAMLIAGVIYKYIEY 646 (1075)
T ss_pred -----------------------CCCCCccchhhhh---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 5655666666665 58999999999999876 778788888888889887665
Q ss_pred cccc
Q psy6067 574 SHSK 577 (584)
Q Consensus 574 ~~~~ 577 (584)
|-.+
T Consensus 647 kGAe 650 (1075)
T KOG2082|consen 647 KGAE 650 (1075)
T ss_pred cccc
Confidence 5443
No 38
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=5.4e-29 Score=264.70 Aligned_cols=344 Identities=17% Similarity=0.149 Sum_probs=269.6
Q ss_pred HHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHHHH
Q psy6067 42 TLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNL 121 (584)
Q Consensus 42 ~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~ 121 (584)
.++.+|+++|+|++..|+..+ ..+++.+++..+++++.+...+++++|+++++|++||.|.|.++.+||..|++.+|.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 456789999999999999865 4455567788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy6067 122 ELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVF 201 (584)
Q Consensus 122 ~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~ 201 (584)
++.+.....+ +....++++..+++ .... ...+.....+++.+++..+|.+|.|..+|+++++
T Consensus 82 ~~~~~~~~~a-------y~~~~~~~l~~~~~-~~~~----------~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~ 143 (381)
T TIGR00837 82 LFVLYILTYA-------YISGGGSILSRLIG-EYFG----------FPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVL 143 (381)
T ss_pred HHHHHHHHHH-------HHHccHHHHHHHHH-HhcC----------CCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 9988888888 88888888887775 1000 0123345566777788899999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhh-hhhcccccccCcC
Q psy6067 202 TFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFD-CIATTGEESKNPK 280 (584)
Q Consensus 202 ~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e-~~~~~~~E~knP~ 280 (584)
+..++..++++++.++.+.+.+++.+.. ..+.++.++..++...+++| |+| ..+...+|.||++
T Consensus 144 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~--------------~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~ 208 (381)
T TIGR00837 144 IFGKIIAFALVFSGLLPHVKGDLLLDVA--------------LDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNV 208 (381)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHhcCc--------------cccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCH
Confidence 9999999888888777655444332110 01234556778888888888 665 6888899998779
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-------CCcHHHHHHH-cChhHHHHHHHHHHHHHHHHHHHHhh
Q psy6067 281 RDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-------EAPFPHIFDS-LGWPVMKWLVTVGSLFALLTAMFGAL 352 (584)
Q Consensus 281 k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-------~~p~~~~~~~-~~~~~~~~li~~~~~~s~~~s~~~~~ 352 (584)
|++||+++.+..++.++|++......+.+|.+++.+ .+++.++++. .+.++...++.++.++++.++.+++.
T Consensus 209 k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~ 288 (381)
T TIGR00837 209 KKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVT 288 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887641 2355666665 57778889999999999999999988
Q ss_pred chhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6067 353 FPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILRY 429 (584)
Q Consensus 353 ~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~l~~y~l~~la~i~~r~ 429 (584)
.+.+ |+ +++.|++.+++++ |..+.+++.+..+++....+-..+..+...+....++...+..+..++
T Consensus 289 l~~~--------d~-l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~ 355 (381)
T TIGR00837 289 LGLF--------DY-LADLFKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWK 355 (381)
T ss_pred HHHH--------HH-HHHHhCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877 33 5555666554444 778889999999998888876666666666666666666655555533
No 39
>KOG1288|consensus
Probab=99.96 E-value=7.5e-27 Score=245.84 Aligned_cols=382 Identities=16% Similarity=0.130 Sum_probs=297.1
Q ss_pred ccCHHHHHHH-HhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccC-cCCceeehHHHhch
Q psy6067 35 VLGLTDLTLL-GIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISK-SGSAYNYTYLSIGE 111 (584)
Q Consensus 35 ~ls~~~~~~l-~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~-~GG~y~~~~~~lG~ 111 (584)
++|.++.++. ..-+|...=+|.+.|.+. ..+|.. .++-++++-.+.+++.++...++++--. .||.|..++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIv-G~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIV-GQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhh-cchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 8988888777 555667777899999987 667765 7777888888899999999999999764 89999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCc-cccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 112 FAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETS-TLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 112 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
++|.-.|..+.+++++.+++ ++.++.|-+.+.++ ...+. -. ....+.-.++..+.+.+++.++..+.+.|
T Consensus 145 EfGGSIGllFf~anV~~~am-------~isG~vE~il~nfG-~~a~g~sg-~~~lP~g~ww~fly~t~vl~l~~~vc~lG 215 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAM-------NISGFVEPILDNFG-KEAQGASG-SQFLPDGYWWRFLYTTLVLALCLIVCLLG 215 (945)
T ss_pred ccCCeeeehhhHHHHhcchh-------hhhhhhHHHHHhcC-ccccCCcc-cccCCCCcchhhHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 99999999999888 22111 00 00111123455677888889999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccC--CCccccc-----------------cCCCCCCCCcchHH
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKE--DIPRTVR-----------------HGGTGGFAPFGLNG 251 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~g~~~ 251 (584)
...++|..++...+..+.+.-+.+..++.+....-.+.+. ..++... ..+...+...+...
T Consensus 216 salfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~ 295 (945)
T KOG1288|consen 216 SALFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYED 295 (945)
T ss_pred HHHHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCcee
Confidence 9999999988887777776666665555432221110000 0000000 00000111112233
Q ss_pred HHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChhH
Q psy6067 252 IIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPV 331 (584)
Q Consensus 252 ~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~ 331 (584)
+-..+...+-+-+|..+.++|++|.|+|+|.|||+.+.++..+.++|++..+++....|+..+.++..+..- ...
T Consensus 296 F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~-----isl 370 (945)
T KOG1288|consen 296 FASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMH-----ISL 370 (945)
T ss_pred hhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheee-----ccc
Confidence 444555666688999999999999999999999999999999999999999999999998877655322221 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccc--hhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHH
Q psy6067 332 MKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLY--DCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDML 409 (584)
Q Consensus 332 ~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP--~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~ 409 (584)
..+++.++++.+.+.+..+.+.++||++.++|||+++| -.|+|.....+.|+.|+.++..+.-++.+.++++.+..+.
T Consensus 371 ~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~i 450 (945)
T KOG1288|consen 371 HPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMI 450 (945)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHH
Confidence 33567778888899999999999999999999999999 7788888788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q psy6067 410 SIGTLLAYTIVALSVLILRYSE 431 (584)
Q Consensus 410 s~~~l~~y~l~~la~i~~r~~~ 431 (584)
++.++++|..++++++.++..-
T Consensus 451 t~~FLlty~~vNLacl~Leiss 472 (945)
T KOG1288|consen 451 TMTFLLTYGAVNLACLLLEISS 472 (945)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999998875
No 40
>KOG2083|consensus
Probab=99.93 E-value=9.3e-25 Score=229.12 Aligned_cols=426 Identities=19% Similarity=0.213 Sum_probs=334.4
Q ss_pred ccccCHHHHHHH-HhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccC-cCCceeehHHHh
Q psy6067 33 ARVLGLTDLTLL-GIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISK-SGSAYNYTYLSI 109 (584)
Q Consensus 33 ~r~ls~~~~~~l-~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~-~GG~y~~~~~~l 109 (584)
+-++++|+.++. ++-++.|.-+|.+.+++. ++||.. .++...++.+++.+++++..-++++-.. +||.|..++|.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wiv-gqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIV-GQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhhee-ecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 347899999998 888999999999999987 778875 8888999999999999999999999864 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHh
Q psy6067 110 GEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISW 189 (584)
Q Consensus 110 G~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~ 189 (584)
||..|...|..|.++..+..++ +..+++|.+..++... + ....+.++.+.+++...+|..
T Consensus 106 g~efggsigiIy~f~~aVa~am-------~~vgfaEsv~~l~~~~--s-----------~~~i~gi~~vt~~ill~i~~a 165 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAM-------YVVGFAESVAHLFETE--S-----------KEMIDGIGSVTVLILLAINVA 165 (643)
T ss_pred cccccchhHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHhc--c-----------HHHhcchhHHHHHHHHHhhhc
Confidence 9999999999999999999999 9999999999998811 0 112233778888889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhccccc---CCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhh
Q psy6067 190 GVSESTRLNSVFTFLNLGTVVVIVGSGLFKMN---PRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGF 266 (584)
Q Consensus 190 G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~ 266 (584)
|+++..|+|.++....++.+.-+.+..+.... .+......+.+.+..+. .+.|. ..+++.+...+-+.+|.
T Consensus 166 g~~w~~k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~----~~~~~--~tfF~vf~vfFpaatgi 239 (643)
T KOG2083|consen 166 GVEWEAKLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNP----DIDPG--YTFFSVFAVFFPAATGI 239 (643)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCC----CcCCC--CceEeeeeeecchhhhh
Confidence 99999999999999999888888887766322 11111111111111110 11111 23555556667799999
Q ss_pred hhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-----CC----cHHHHHHHcC-hhHHHHHH
Q psy6067 267 DCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-----EA----PFPHIFDSLG-WPVMKWLV 336 (584)
Q Consensus 267 e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-----~~----p~~~~~~~~~-~~~~~~li 336 (584)
-+..+++++.|||++++|++.+.++.....+|+....-.+.+.-.+.... +. .+.+-.+... -......+
T Consensus 240 laG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~ 319 (643)
T KOG2083|consen 240 LAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLI 319 (643)
T ss_pred hccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccch
Confidence 99999999999999999999999999999999998888777655443221 11 2222222221 12234567
Q ss_pred HHHHHHHHHHHHHHhhchhHHHHHHHHhcCccc--hhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q psy6067 337 TVGSLFALLTAMFGALFPLPRILYAMSLDGLLY--DCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTL 414 (584)
Q Consensus 337 ~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP--~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~l 414 (584)
..+...+.+++..+.+..++++++++.+|+..| .+|+|-.++++.|.++..++...+..+..+++.+.+..+.+.+.+
T Consensus 320 ~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL 399 (643)
T KOG2083|consen 320 TAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFL 399 (643)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhh
Confidence 788888999999999999999999999999999 888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhh
Q psy6067 415 LAYTIVALSVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSA 494 (584)
Q Consensus 415 ~~y~l~~la~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (584)
..|.+.+.+++..+...++
T Consensus 400 ~syAlinf~~f~aSl~~s~------------------------------------------------------------- 418 (643)
T KOG2083|consen 400 LSYALINFSCFHASLAISE------------------------------------------------------------- 418 (643)
T ss_pred hhhhccchhhhhhhhcccc-------------------------------------------------------------
Confidence 9999999999977766532
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccc
Q psy6067 495 LQYATFTLLGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGIS 574 (584)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 574 (584)
.+++.++.+ .+|+..+|.+.|..+++.. .|...++-...-...|++.+++
T Consensus 419 --------------------------~wRp~f~~y-n~wVSllGalKOG~ImFli---~w~aaLi~~~~~~~Ly~yv~~~ 468 (643)
T KOG2083|consen 419 --------------------------GWRPSFKFY-NAWVSLLGALLCLAIMFLI---SWWAALITFSVLSALYLYVGRR 468 (643)
T ss_pred --------------------------ccCchhhhH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhc
Confidence 345556655 3689999999999988866 5555666666666666655554
Q ss_pred cc
Q psy6067 575 HS 576 (584)
Q Consensus 575 ~~ 576 (584)
..
T Consensus 469 ~p 470 (643)
T KOG2083|consen 469 KP 470 (643)
T ss_pred CC
Confidence 43
No 41
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.90 E-value=4.8e-21 Score=202.09 Aligned_cols=287 Identities=15% Similarity=0.122 Sum_probs=230.5
Q ss_pred ccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHH
Q psy6067 35 VLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAA 114 (584)
Q Consensus 35 ~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g 114 (584)
++|.+|.+++.++.++|+|++..|+..+ +.+|+++|++++++++.+++.+++++|+++++|+. |.+.|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~-~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVS-QSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHH-hccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 6899999999999999999999999865 67888999999999999999999999999999987 699999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhh
Q psy6067 115 YIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSES 194 (584)
Q Consensus 115 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~ 194 (584)
+..+|.+++......+. .....+++++..+. ++++.+.+.+.+++++...+..|+|..
T Consensus 80 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l---------------~~tp~~~~~l~~l~~~~~~~~~Gi~~i 137 (359)
T TIGR00912 80 RLLSILFILYFFLIAAY-------LIRIFADFIKTYLL---------------PRTPIIVIIILIIIVSIYIVRKGIEVL 137 (359)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc---------------CCCCHHHHHHHHHHHHHHHHHccHHHH
Confidence 99999988877777667 77778888776554 134456777788888889999999999
Q ss_pred HHHHHHHHHHHHHHH-HHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHH-HHHHhhhhhhhhhcc
Q psy6067 195 TRLNSVFTFLNLGTV-VVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAA-KCFFGFVGFDCIATT 272 (584)
Q Consensus 195 ~~~~~~~~~~~l~~l-l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~-~~~~af~G~e~~~~~ 272 (584)
+|++.++....+... +++........+.++..+ ..++|+.+.+.+.. ...|+|.|+|.....
T Consensus 138 ~r~~~i~~~~~i~~~~~il~~~~~~~~~~~~l~P----------------~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~ 201 (359)
T TIGR00912 138 LRTAEILLIIFLILFILVLILLAPKLGNIKNLLP----------------VLENGLSPILKGAYPVVTFAFGEIEIFFLL 201 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHccC----------------ccccCcHHHHhhhhHHhhhhhHHHHHHHHH
Confidence 999999998887763 434333332222222221 33455666777766 889999999999999
Q ss_pred cccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-CCcHHHHHHHcChh-H---HHHHHHHHHHHHHHHH
Q psy6067 273 GEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EAPFPHIFDSLGWP-V---MKWLVTVGSLFALLTA 347 (584)
Q Consensus 273 ~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-~~p~~~~~~~~~~~-~---~~~li~~~~~~s~~~s 347 (584)
.+|.||| |+.||++..++.+++++|.+...+..+..++++... ..|..+..+....+ . ...++....+.+.+..
T Consensus 202 ~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~ 280 (359)
T TIGR00912 202 FPLLSKK-KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVK 280 (359)
T ss_pred HHHhCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 569999999999999999999999999999887754 67999988887544 2 3355556666677777
Q ss_pred HHHhhchhHHHHHHH
Q psy6067 348 MFGALFPLPRILYAM 362 (584)
Q Consensus 348 ~~~~~~~~sR~l~a~ 362 (584)
....++..++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~ 295 (359)
T TIGR00912 281 IAFYLYIAVKGLSKL 295 (359)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776543
No 42
>PHA02764 hypothetical protein; Provisional
Probab=99.88 E-value=1.6e-20 Score=183.25 Aligned_cols=326 Identities=13% Similarity=0.120 Sum_probs=202.8
Q ss_pred CCCCCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCcee
Q psy6067 24 DGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYN 103 (584)
Q Consensus 24 ~~~~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~ 103 (584)
|..|+++++.|+.|.+|+++..++.+-+......+...+....|...+++|+++++++++.+++|+|+++++|++||.|.
T Consensus 2 ~FvReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYV 81 (399)
T PHA02764 2 EFERKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYA 81 (399)
T ss_pred ccchhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEE
Confidence 34677889999999999999998887333322323333323356678999999999999999999999999999999999
Q ss_pred ehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHH
Q psy6067 104 YTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLM 183 (584)
Q Consensus 104 ~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~ 183 (584)
|.+|++||.+|++.||..|+.+....++ .+--. . .+..-.+.........-....
T Consensus 82 YISRAFGP~~GFLvG~a~WLtl~~G~Pa-------l~~l~----~--------------~~~~i~~~~~~f~~~~s~~~i 136 (399)
T PHA02764 82 YIRTAFSSKFYTIFGISLWLTYVLSQPI-------LGDLV----L--------------LNFNIQNQFEQFLIVESLFPI 136 (399)
T ss_pred EhHHhhCccHHHHHHHHHHHHHHhhcch-------hhhee----e--------------eeeeeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777 22100 0 000000111111111122223
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchH-HHHHHHHHHHHh
Q psy6067 184 SALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLN-GIIVGAAKCFFG 262 (584)
Q Consensus 184 ~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~i~~~~~a 262 (584)
..+-..|.|..+|...++.....+ .-+.... +.-++... +...+ ....++....-.
T Consensus 137 ~~~i~~~~~~~~~~v~il~~a~~i---~aif~~~---~s~n~~~~-----------------~f~~snt~~~a~~~~l~~ 193 (399)
T PHA02764 137 VLLIIANKKIYAKIVDILAIAQII---IAIFIAF---KSFNFQYQ-----------------NFTISNTLLSALLFDLSA 193 (399)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHH---HHHHhhc---cceeEEEc-----------------ceeehHHHHHHHHHHHHH
Confidence 334455677788777664444433 1111111 11111110 11111 244455555667
Q ss_pred hhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChhHHHHHHHHHHHH
Q psy6067 263 FVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLF 342 (584)
Q Consensus 263 f~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~~~~ 342 (584)
|.=.|+..+.++|.||-+|....+-..+...+.++-+..+ +. + -.+..+....
T Consensus 194 ~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~s--------y~-------------n------~~il~~~~~~ 246 (399)
T PHA02764 194 FIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDS--------YS-------------N------LNILFALMPI 246 (399)
T ss_pred HHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHh--------hh-------------h------HHHHHHHHHH
Confidence 7778999999999999999887777777777665544433 00 0 0112222344
Q ss_pred HHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhC---HH-HHHHHHHHHHHHHHH
Q psy6067 343 ALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFK---LD-QLVDMLSIGTLLAYT 418 (584)
Q Consensus 343 s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~---~~-~l~~~~s~~~l~~y~ 418 (584)
+.++-+.-..-..||+.++|+.|+.+|+.|+|.|| ++|+ +..+......++-+ ++ +..--...+...-|+
T Consensus 247 w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~~--nv~~----l~f~~~~~~~~~en~l~~~~sf~ldg~lf~~wn~~ 320 (399)
T PHA02764 247 WFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKINP--NVLL----LIFIAETIANVLENLLGFNISFGLDGLLFIFWNFI 320 (399)
T ss_pred HHHhheeeecchHHHHHHHHHhhhhchHHHhccCC--Ccee----HHHHHHHHHHHHHHHhCCeeeeeccccHHHHHHHH
Confidence 45555555566789999999999999999999984 7887 22222222222221 11 112223455667777
Q ss_pred HHHHHHHHHhhc
Q psy6067 419 IVALSVLILRYS 430 (584)
Q Consensus 419 l~~la~i~~r~~ 430 (584)
+..+++.+...+
T Consensus 321 ~~a~~~~k~~~~ 332 (399)
T PHA02764 321 IVAFAYLKLMND 332 (399)
T ss_pred HHHHHHHHhcCc
Confidence 777775554433
No 43
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.83 E-value=1.7e-17 Score=173.52 Aligned_cols=334 Identities=15% Similarity=0.143 Sum_probs=251.0
Q ss_pred HhhhhhhhhHhHhHHHhHhhhcChH---HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHHHH
Q psy6067 45 GIGATLGVGVYVLAGSVAKNQAGPS---VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNL 121 (584)
Q Consensus 45 ~ig~~iG~gif~~~~~v~~~~aG~~---~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~ 121 (584)
.++.-+|+|.+..|..+. ..+|.. +.++|+++++...+.+++ ..|++||.|.+.++.+||..|++.+|..
T Consensus 4 lFamffGAGNlIfPp~lG-~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLG-LAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHhhhHHhhhHHHH-HHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHH
Confidence 355568999999999876 445532 788999999999888888 7899999999999999999999999988
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHH-HHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy6067 122 ELFIEVQAFCIEFSRIREAAALFRL-LKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSV 200 (584)
Q Consensus 122 ~l~~~~~~a~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~ 200 (584)
++..-...+. -|.+....+. +..+++ .. .......+..+++..+...+|+++-|...+++++
T Consensus 77 ~l~iGP~~ai-----PRtaa~s~e~~i~p~~~----------~~--~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~ 139 (378)
T TIGR00796 77 YLTIGPLFAI-----PRTATVSFEMGIAPLLH----------SP--TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKF 139 (378)
T ss_pred HHHHHhchhh-----hHHHHHHHHHHHHhccC----------cc--cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHH
Confidence 8665444322 1122222221 222332 00 0012234566667777778999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhh-------hhhhhhccc
Q psy6067 201 FTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFV-------GFDCIATTG 273 (584)
Q Consensus 201 ~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~-------G~e~~~~~~ 273 (584)
++..+++.++.+++.++.+...+ ...+.+ .+.++ ..+..++....+.++ |+-.+.++.
T Consensus 140 LTP~lLi~l~~lii~g~~~p~g~-~~~~~~------------~~~~~--~~f~~g~l~GY~TmD~laal~fg~iiv~~i~ 204 (378)
T TIGR00796 140 LTPALLVTLLALIIKALLWPAGP-ILAASG------------AYASQ--QAFSKGFLEGYLTMDALAALVFGIIVVNAIR 204 (378)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC-cCCccc------------ccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998753221 111100 01110 236677777888888 888888888
Q ss_pred c-cccCcCCCchhHHHHHH-HHHHHHHHHHHHHHHhhccccccC----cCCcHHHHHHHcChhHHHHHHHHHHHHHHHHH
Q psy6067 274 E-ESKNPKRDIPLSILLSL-FIVFVCYLAIAIVLTLIIPYYEQD----AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTA 347 (584)
Q Consensus 274 ~-E~knP~k~ip~ai~~~i-~i~~viyil~~~~~~~~~p~~~~~----~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s 347 (584)
+ |.|||+|+.|+.+..++ ..+.+.|+...++..+..+.+... ......++.+...|+.+..++.+...++|+++
T Consensus 205 ~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT 284 (378)
T TIGR00796 205 SRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTT 284 (378)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHH
Confidence 8 99999999999999999 777788888888888877755432 23466777888888999999999999999999
Q ss_pred HHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy6067 348 MFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLI- 426 (584)
Q Consensus 348 ~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~l~~y~l~~la~i~- 426 (584)
.++...+.++ +|+|.++| +|+++.++...+...+.....++.+.+++.-...+.|-+.....+.
T Consensus 285 ~iGli~~~a~-------------~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ 349 (378)
T TIGR00796 285 AVGLTTACSE-------------YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLS 349 (378)
T ss_pred HHHHHHHHHH-------------HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988554 46677654 9999999998888888888899999999988888888887777777
Q ss_pred -HhhccC
Q psy6067 427 -LRYSED 432 (584)
Q Consensus 427 -~r~~~~ 432 (584)
+|++.|
T Consensus 350 ll~~~~~ 356 (378)
T TIGR00796 350 FLRKLWD 356 (378)
T ss_pred HHHHhcC
Confidence 665543
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.82 E-value=8e-17 Score=170.87 Aligned_cols=354 Identities=18% Similarity=0.193 Sum_probs=269.0
Q ss_pred cccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchh
Q psy6067 34 RVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGP-SVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEF 112 (584)
Q Consensus 34 r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~ 112 (584)
|+-+.++..++.+|..+|+|+..+|... ..+|- .+.+..++++..+...++.++|.+.+.|+..+.-..+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~--~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIAT--AGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 3457789999999999999999999653 44564 47888899999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhh
Q psy6067 113 AAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVS 192 (584)
Q Consensus 113 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r 192 (584)
.+++.+..+.+.......+ +..+.++.+++.++ .. . ..+........++.++...+-..|.|
T Consensus 79 g~~~~~~~~~~~~y~ll~A-------Yisg~g~~~~~~l~-~~--------~--~~~~~~~~~~~~f~~i~~~iv~~g~~ 140 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVA-------YISGGGSILSSLLG-NQ--------L--GTDLSPWLSSLLFTIIFGGIVYFGTK 140 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHccHHHHHHHHH-Hh--------c--CCCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999888888888 99999999999887 11 1 01233455666677777888899999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhcc
Q psy6067 193 ESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATT 272 (584)
Q Consensus 193 ~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~ 272 (584)
...|+++.+...+++.++.+.+.++.+.+.++..... ..+..+...+..++..+++|.-...++.+
T Consensus 141 ~v~~~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~--------------~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl 206 (394)
T PF03222_consen 141 AVDRINRVLVFGMIISFIILVVYLIPHWNPSNLLDAP--------------PSPSDWSYILPALPVLVFSFGFHNIVPSL 206 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccc--------------cccccHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999999998888766555433211 11234677889999999999999999999
Q ss_pred cccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC----cC---CcHHHHHHH-cChhHHHHHHHHHHHHHH
Q psy6067 273 GEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD----AE---APFPHIFDS-LGWPVMKWLVTVGSLFAL 344 (584)
Q Consensus 273 ~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~----~~---~p~~~~~~~-~~~~~~~~li~~~~~~s~ 344 (584)
.+..++.+|+++|++..+..+..++|++..+++.+.+|.++.. .+ ++.....++ .++++...+..+...++.
T Consensus 207 ~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai 286 (394)
T PF03222_consen 207 VKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAI 286 (394)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 9999977888999999999999999999999999989887632 12 234444444 467888888889999998
Q ss_pred HHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhC--HHHHHHHHHHH-HHHHHHHHH
Q psy6067 345 LTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFK--LDQLVDMLSIG-TLLAYTIVA 421 (584)
Q Consensus 345 ~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~--~~~l~~~~s~~-~l~~y~l~~ 421 (584)
.+|..+...+..+.+... +.+.| +.+.-.....++.+..+++.+..+ |....+.+... ..+..+++.
T Consensus 287 ~TSFlGv~lgl~d~l~d~---------~k~~~-~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~ 356 (394)
T PF03222_consen 287 ATSFLGVYLGLFDFLADL---------FKLKN-NSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPA 356 (394)
T ss_pred HHHHHHHHHHHHHHHHHH---------HcCCc-cccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHH
Confidence 888888888877766432 22212 222234455666777777777665 44444555433 344445555
Q ss_pred HHHHHHhhcc
Q psy6067 422 LSVLILRYSE 431 (584)
Q Consensus 422 la~i~~r~~~ 431 (584)
+..++.|+++
T Consensus 357 ~m~~~~r~~~ 366 (394)
T PF03222_consen 357 LMVWKARKRK 366 (394)
T ss_pred HHHHHHHccc
Confidence 5555555554
No 45
>PRK10483 tryptophan permease; Provisional
Probab=99.78 E-value=4e-16 Score=164.37 Aligned_cols=354 Identities=15% Similarity=0.084 Sum_probs=257.7
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHh
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGP-SVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSI 109 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~l 109 (584)
+.|++.+.++..++..|..+|+|++..|... +.+|- .+.+..++.++.+...++.+.|.+.++|+.-+....+++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~--a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVM--SGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHc
Confidence 4467899999999999999999999999643 44554 47888999999999999999999999999888999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHh
Q psy6067 110 GEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISW 189 (584)
Q Consensus 110 G~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~ 189 (584)
||.+..+.+..+.+-......+ |..+.++.++..++.. + .+.+.....+++.++...+.+.
T Consensus 84 G~~g~~i~~~s~lfl~Y~Ll~A-------Yisg~g~il~~~l~~~---------~---~~i~~~~~~llF~~~~~~iv~~ 144 (414)
T PRK10483 84 GKGWNVVNGISIAFVLYILTYA-------YISASGSILHHTFAEM---------S---LNVPARAAGFGFALLVAFVVWL 144 (414)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH-------HHhCcHHHHHHHHHhc---------C---CCCcHHHHHHHHHHHHHHHHHh
Confidence 9998888777777766666677 8888899998888610 0 1223456778888888999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhh
Q psy6067 190 GVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCI 269 (584)
Q Consensus 190 G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~ 269 (584)
|.|.+.|+++++...+++.+++.+.....+.+.++..+... ..+..+...+.+++..+++|.=...+
T Consensus 145 gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~-------------~~~~~~~~~~~alPvl~~SFgfh~iI 211 (414)
T PRK10483 145 STKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAE-------------SNASYAPYLLMTLPFCLASFGYHGNV 211 (414)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhcccc-------------ccchhHHHHHHHHHHHHhhccCCCcc
Confidence 99999999999999999998887777666555443322110 01112345778889999999888999
Q ss_pred hcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC----cCCc---HHHHH-HHcChhHHHHHHHHHHH
Q psy6067 270 ATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD----AEAP---FPHIF-DSLGWPVMKWLVTVGSL 341 (584)
Q Consensus 270 ~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~----~~~p---~~~~~-~~~~~~~~~~li~~~~~ 341 (584)
+.+.++.++..|+++|++..+..+..++|++...++.+.+|+++.. .++. +.... +..+.++...+..+...
T Consensus 212 Psl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~ 291 (414)
T PRK10483 212 PSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSN 291 (414)
T ss_pred hHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9999998876678999999999999999999999999999977632 2222 22233 33466777778888888
Q ss_pred HHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHH---HHHHHHHHH
Q psy6067 342 FALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDML---SIGTLLAYT 418 (584)
Q Consensus 342 ~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~---s~~~l~~y~ 418 (584)
++..+|..+...+....+.++-+.+ + +.+-.....+++.+..+++.+.++-..+..+. .....+.-+
T Consensus 292 ~Ai~TSFlGv~LGL~d~l~D~~k~~---------~-~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~i 361 (414)
T PRK10483 292 FAVASSFLGVTLGLFDYLADLFGFD---------D-SAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAI 361 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---------C-ccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777777666655444321 1 11222234567888888888887644333332 233333334
Q ss_pred HHHHHHHHHh
Q psy6067 419 IVALSVLILR 428 (584)
Q Consensus 419 l~~la~i~~r 428 (584)
++.+-+++.|
T Consensus 362 lP~lM~~~~R 371 (414)
T PRK10483 362 VPALLARASR 371 (414)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 46
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.77 E-value=1.2e-15 Score=160.69 Aligned_cols=351 Identities=17% Similarity=0.123 Sum_probs=250.1
Q ss_pred CHHHHHHHHhhhhhhhhHhHhHHHhHhhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHH
Q psy6067 37 GLTDLTLLGIGATLGVGVYVLAGSVAKNQAGP-SVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAY 115 (584)
Q Consensus 37 s~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~ 115 (584)
+.+...++..|.++|+|++..|... +.+|- .+.+..++.++.+...++.+.|...++|+.-+....+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~--a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDL--AGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 7777999999999999999999643 44554 47888999999999999999999999999888999999999999888
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhH
Q psy6067 116 IIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSEST 195 (584)
Q Consensus 116 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~ 195 (584)
+.+..+.+-......+ |..+.++.++..++ ... + .+.++...++++.++...+-+.|.|...
T Consensus 88 i~~~~~~fl~Y~Ll~A-------YisggG~il~~~l~-~~~-------~---~~i~~~~~~llF~~~~~~~v~~gt~~vd 149 (415)
T PRK09664 88 ISGITVAFVLYILTYA-------YISANGAIISETIS-MNL-------G---YHANPRIVGICTAIFVASVLWISSLAAS 149 (415)
T ss_pred HHHHHHHHHHHHHHHH-------HHhccHHHHHHHHh-hhc-------c---CCCcHHHHHHHHHHHHHHHHHhchhHHH
Confidence 8887776655666677 88888899988886 100 0 1233445668888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhccccc
Q psy6067 196 RLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEE 275 (584)
Q Consensus 196 ~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~~E 275 (584)
|.++++...+++.+++.+.....+.+.++....+.. . ....-+...+.+++..+++|.=...++.+...
T Consensus 150 ~~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~----------~-~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y 218 (415)
T PRK09664 150 RITSLFLGLKIISFVIVFGSFFFQVDYSILRDATST----------T-AGTSYFPYIFMALPVCLASFGFHGNIPSLIIC 218 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccc----------c-ccchHHHHHHHHHHHHHHhhhCCCcchHHHHH
Confidence 999999999999988877777766655443321100 0 00001234677888888888888889999888
Q ss_pred ccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC----cCCcHHH----HHHHcChhHHHHHHHHHHHHHHHHH
Q psy6067 276 SKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD----AEAPFPH----IFDSLGWPVMKWLVTVGSLFALLTA 347 (584)
Q Consensus 276 ~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~----~~~p~~~----~~~~~~~~~~~~li~~~~~~s~~~s 347 (584)
.++..|.++|+++.+..+..++|++...++.+.+|+++.. ++....+ ..+...+++...+..+...++..+|
T Consensus 219 ~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TS 298 (415)
T PRK09664 219 YGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASS 298 (415)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHH
Confidence 8876788999999999999999999999999988877642 2222322 2334466777777777777777777
Q ss_pred HHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHH---HHHHHHHHHHHHHHH
Q psy6067 348 MFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDML---SIGTLLAYTIVALSV 424 (584)
Q Consensus 348 ~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~---s~~~l~~y~l~~la~ 424 (584)
..+...+....+..+-+ +.+ +++-......++.+..+++.+.++-..+..+. .....+.-+++.+-+
T Consensus 299 FlGv~LGL~D~l~D~~~---------~~~-~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~ 368 (415)
T PRK09664 299 FFGVTLGLFDYLADLFK---------IDN-SHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLA 368 (415)
T ss_pred HHHHHHHHHHHHHHHhC---------CCC-ccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666665555443332 111 22223334567888888888888644433333 233333334444444
Q ss_pred HHHh
Q psy6067 425 LILR 428 (584)
Q Consensus 425 i~~r 428 (584)
++.|
T Consensus 369 ~~~R 372 (415)
T PRK09664 369 IKAR 372 (415)
T ss_pred HHHh
Confidence 4444
No 47
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.76 E-value=4.1e-16 Score=165.24 Aligned_cols=352 Identities=12% Similarity=0.074 Sum_probs=245.1
Q ss_pred HHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHH----hhhcccC-cCCceeehHHHhchhHHHH
Q psy6067 42 TLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVE----FASRISK-SGSAYNYTYLSIGEFAAYI 116 (584)
Q Consensus 42 ~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aE----L~s~~P~-~GG~y~~~~~~lG~~~g~~ 116 (584)
+.+.+|.++|+|++..|.. +|...|+.++++++++.+.++.+.. .....|+ ..+.+.++++.+|+..|.+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 5567888999999999975 2444577777777766666555544 4333344 6789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHH
Q psy6067 117 IGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTR 196 (584)
Q Consensus 117 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~ 196 (584)
.++.|++.......+ ++.+..+.+.+++. ... .. ...+..+..++++.+...++..|.|...|
T Consensus 84 i~~lY~~~~~~i~~a-------Y~~~~~~~~~~fl~-~~~-------~~--~~p~~~i~~lilv~il~~iv~~G~~~i~r 146 (397)
T TIGR00814 84 ITLLYFFAIYPILLI-------YSVAITNDSASFLV-NQL-------GT--APPLRGLLSLALILILVAIMSFGEKLLFK 146 (397)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-Hhc-------CC--CCcHHHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 999999998888888 88878777777765 100 00 01223456677777778999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhccc---
Q psy6067 197 LNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTG--- 273 (584)
Q Consensus 197 ~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~--- 273 (584)
++.++...+++.++++.+..+.+.+.++....+ ....++...+.+++..+|+|.|+|..+.++
T Consensus 147 ~~~il~~~~ii~l~~l~~~lip~~~~~~L~~~p--------------~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~ 212 (397)
T TIGR00814 147 IMGPLVFPLVLILVLLSLYLIPHWNGANLTTFP--------------SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISY 212 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCC--------------cccchHHHHHHHHHHHHHHHHccccchHHHHHH
Confidence 999999999999888888888766655543211 111235678999999999999999999998
Q ss_pred -ccccCc---CCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc----C-CcHHHHHHHcChhHHHHHHHHHHHHHH
Q psy6067 274 -EESKNP---KRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA----E-APFPHIFDSLGWPVMKWLVTVGSLFAL 344 (584)
Q Consensus 274 -~E~knP---~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~----~-~p~~~~~~~~~~~~~~~li~~~~~~s~ 344 (584)
+|.+|| +|+..|.+..+..+..++|+...+++....++++..+ + +.+....+....++...+..+...++.
T Consensus 213 ~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai 292 (397)
T TIGR00814 213 REEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAI 292 (397)
T ss_pred HHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 677655 5778899999999999999999999999999887431 2 223334445677888888888888999
Q ss_pred HHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh-CHHHHHH-HH-HHHHHHHHHHHH
Q psy6067 345 LTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-KLDQLVD-ML-SIGTLLAYTIVA 421 (584)
Q Consensus 345 ~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-~~~~l~~-~~-s~~~l~~y~l~~ 421 (584)
.+|..+...+....+..+-++..-++. .|.| ++..=.....+..+.+...+... +.-.+.+ ++ -+..++.|+++.
T Consensus 293 ~tSFlG~~lg~~e~l~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~ 370 (397)
T TIGR00814 293 SKSFFGHYLGAREGLNGIVLNSLKMKG-KKIN-IRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPM 370 (397)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcccc-cccC-HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999888888754211100 0111 11111112222222222222222 2333333 43 366677788888
Q ss_pred HHHHHHhhcc
Q psy6067 422 LSVLILRYSE 431 (584)
Q Consensus 422 la~i~~r~~~ 431 (584)
.+..+...-+
T Consensus 371 ~~~~~v~~l~ 380 (397)
T TIGR00814 371 YAIYKVPALK 380 (397)
T ss_pred HHHHccHHHH
Confidence 7776655443
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.75 E-value=4.9e-15 Score=156.76 Aligned_cols=347 Identities=13% Similarity=0.089 Sum_probs=255.8
Q ss_pred CHHHHHHHHhhhhhhhhHhHhHHHhHhhhcCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHH
Q psy6067 37 GLTDLTLLGIGATLGVGVYVLAGSVAKNQAGP-SVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAY 115 (584)
Q Consensus 37 s~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~ 115 (584)
+.+...++..|..+|+|++.+|-.. +.+|. .+.+..++++.++...++.++|.....|+.-+....+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~--~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAA--AGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 6688899999999999999999653 44565 37777888888899999999999888888778999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhH
Q psy6067 116 IIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSEST 195 (584)
Q Consensus 116 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~ 195 (584)
+.+..+.+.......+ |..+.++.+...+.. ++. . +.......+.+.++...+-+.|.|...
T Consensus 82 i~~~~y~fl~y~ll~A-------Yisg~g~il~~~l~~-----~~~-~-----~i~~~~~~l~F~~~~~~iv~~g~~~v~ 143 (403)
T PRK15132 82 LTGFSMMFLMYALTAA-------YISGAGELLASSISD-----WTG-I-----SMSPTAGVLLFTLVAGGVVCVGTSSVD 143 (403)
T ss_pred HHHHHHHHHHHHHHHH-------HHhCcHHHHHHHHHH-----hcc-C-----CCChHHHHHHHHHHHHHHHhccHHHHH
Confidence 9999999888888888 899977777776651 000 0 112234555666666668888999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhccccc
Q psy6067 196 RLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEE 275 (584)
Q Consensus 196 ~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~~E 275 (584)
|+++++...+++.++......+.+.+.+++...+ + +....+.+++..+++|.=...++.+...
T Consensus 144 ~~n~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~~--------------~---~~~~~~~~iPvl~~SFgfh~iIpsl~~y 206 (403)
T PRK15132 144 LFNRFLFSAKIIFLVVMLALMMPHIHKVNLLTLP--------------L---QQGLALSAIPVIFTSFGFHGSVPSIVSY 206 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcCC--------------c---cccHHHHHHHHHHHHhhCCcccHHHHHH
Confidence 9999999999998887777666655544433111 1 0112778889999999989999999999
Q ss_pred ccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC----cCC---cHHHHH-HHcChhHHHHHHHHHHHHHHHHH
Q psy6067 276 SKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD----AEA---PFPHIF-DSLGWPVMKWLVTVGSLFALLTA 347 (584)
Q Consensus 276 ~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~----~~~---p~~~~~-~~~~~~~~~~li~~~~~~s~~~s 347 (584)
.++.+|+++|++..+..+..++|++...++.+..|.++.. ++. +..+.. +..+.++...+..+...++..+|
T Consensus 207 ~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TS 286 (403)
T PRK15132 207 MGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATS 286 (403)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHH
Confidence 8887788999999999999999999999999999988642 222 333333 44577888888888888888888
Q ss_pred HHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhC--HHHHHHHHH-HHHHHHHHHHHHHH
Q psy6067 348 MFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFK--LDQLVDMLS-IGTLLAYTIVALSV 424 (584)
Q Consensus 348 ~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~--~~~l~~~~s-~~~l~~y~l~~la~ 424 (584)
..+...+..+.+.++-+.+. + +.+ -....+++.+..+++....+ |....+.+. ....+.++++.+..
T Consensus 287 FlGv~lgl~d~l~d~~~~~~--------~-~~~-r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~ 356 (403)
T PRK15132 287 FLGVALGLFDYLADLFQRRN--------T-VGG-RLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLV 356 (403)
T ss_pred HHHHHHHHHHHHHHHHccCc--------c-ccC-CchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777776654311 1 111 23345667777777777664 443333333 44455666666666
Q ss_pred HHHhhc
Q psy6067 425 LILRYS 430 (584)
Q Consensus 425 i~~r~~ 430 (584)
.+.|++
T Consensus 357 ~~~r~~ 362 (403)
T PRK15132 357 WQSRKQ 362 (403)
T ss_pred HHHhhc
Confidence 666644
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.62 E-value=2.2e-12 Score=138.03 Aligned_cols=359 Identities=16% Similarity=0.111 Sum_probs=254.7
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCcC-CceeehHHH
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKSG-SAYNYTYLS 108 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~G-G~y~~~~~~ 108 (584)
..+++-+..+.+.+.+|.++|+|+...|-. ...+|-. .++..++++.++....+.+.|.....|+.. +.+.-+++.
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a--~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA--FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY 81 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHH--hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence 345667788899999999999999999954 3556654 788889999999999999999999999984 999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
+||.++.+.+..+.+.......+ +....++.+...++ .... . .+....+..+++..++..+..
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~a-------Y~~~~g~~l~~~~~-~~~~-------~--~~~~r~~~~lif~~~~~~l~~ 144 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVA-------YIVGIGNLLASFLG-NQFG-------L--NPLPRKLGSLIFALVLAFLSW 144 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHH-------HHhcchhHHHHHHH-hhcc-------c--CCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888 99999999988887 1110 0 013445666777777777999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDC 268 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~ 268 (584)
.|-+...|.+..+...+++.++++......+.+..+....+. ..+..+..++.+++...++|.+.-.
T Consensus 145 ~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~~~ipv~vfsF~~h~~ 211 (415)
T COG0814 145 LGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPS-------------ASQSFWKYLLLAIPVFVFSFGFHGN 211 (415)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccc-------------cchhhHHHHHHHhhHHHhhhhCCcc
Confidence 999999999999999999999988888776544332221110 0023456788999999999999999
Q ss_pred hhcccccccCcCCC-chhHHHHHHHHHHHHHHHHHHHHHhhccccccC-------cCCcHHHHHHH-cChhHHHHHHHHH
Q psy6067 269 IATTGEESKNPKRD-IPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-------AEAPFPHIFDS-LGWPVMKWLVTVG 339 (584)
Q Consensus 269 ~~~~~~E~knP~k~-ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-------~~~p~~~~~~~-~~~~~~~~li~~~ 339 (584)
...+..|+|+++|+ ++|++..+..+..++|+...+....+++.+... +......+... ...+.......+.
T Consensus 212 i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f 291 (415)
T COG0814 212 IPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIF 291 (415)
T ss_pred chHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999988877 999999999999999999999999999877421 12233333333 3445555666666
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHH----HHHH
Q psy6067 340 SLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSI----GTLL 415 (584)
Q Consensus 340 ~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~----~~l~ 415 (584)
..++..++..+...+.=..+. +.+.+ +++++..............++.+............. ..+.
T Consensus 292 ~~~Ai~tSFlgv~lg~~~~~~---------~~~~~-~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ig 361 (415)
T COG0814 292 ALFAIATSFLGVYLGLFEGLA---------DLFKK-SNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIG 361 (415)
T ss_pred HHHHHHHHHhCchhhHHHhhh---------HHHHh-ccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 666665554333333222222 22332 212233334444455555555555554444444433 3344
Q ss_pred HHHHHHHHHHHHhhcc
Q psy6067 416 AYTIVALSVLILRYSE 431 (584)
Q Consensus 416 ~y~l~~la~i~~r~~~ 431 (584)
+-+...+.++.-|+.+
T Consensus 362 a~i~~~ll~~~p~~~~ 377 (415)
T COG0814 362 APIIPALLFIKPRKLI 377 (415)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4455555555555554
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.61 E-value=5.2e-13 Score=138.64 Aligned_cols=287 Identities=16% Similarity=0.145 Sum_probs=237.9
Q ss_pred ccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHH
Q psy6067 35 VLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAA 114 (584)
Q Consensus 35 ~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g 114 (584)
++|.+|.+.+.+..++|.++...|+..+ ..+| ++|++.+++++..+..++.+..+.+++|+. ....+.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~-~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILA-EQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 5788999999999999999999999876 4456 899999999999999999999999999986 588999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhh
Q psy6067 115 YIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSES 194 (584)
Q Consensus 115 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~ 194 (584)
...+..+.+.+....+. .....++.++..+. ++++.+.+...++..+......|.+..
T Consensus 78 ~ii~~~~~l~~l~~~~~-------~lr~~~~~i~~~~l---------------p~TP~~~i~~~~ll~~~y~a~~G~e~i 135 (320)
T PF03845_consen 78 KIINLLYILYFLLISAL-------VLREFSEFIKTYLL---------------PETPIWVIILLFLLVAAYAARKGIEVI 135 (320)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc---------------CcCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999988888888 99999999988765 256677888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhcccc
Q psy6067 195 TRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGE 274 (584)
Q Consensus 195 ~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~~ 274 (584)
+|...+.....++.++.+.+......+.++..+ ..++|+..++.+.....+.|.|+|.......
T Consensus 136 ~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~l~P----------------~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p 199 (320)
T PF03845_consen 136 ARVAEILFPIFLILLLLILLLSIPNIDWDNLLP----------------VLESGIKPILKGSLVISFPFGGIEILLFLFP 199 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHeeC----------------cccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888887777776666655444443332 3456777889998888999999999999999
Q ss_pred cccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-CCcHHHHHHHcChh----HHHHHHHHHHHHHHHHHHH
Q psy6067 275 ESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EAPFPHIFDSLGWP----VMKWLVTVGSLFALLTAMF 349 (584)
Q Consensus 275 E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-~~p~~~~~~~~~~~----~~~~li~~~~~~s~~~s~~ 349 (584)
.+|||+| ..|....+..++.++|.+..+......+.+.... ..|.....+...-+ -...++......+.+....
T Consensus 200 ~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~ 278 (320)
T PF03845_consen 200 FVKDKKK-LKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKIS 278 (320)
T ss_pred HcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999754 7899999999999999999999999888876543 56888887776433 3445666667777777788
Q ss_pred HhhchhHHHHHHHH
Q psy6067 350 GALFPLPRILYAMS 363 (584)
Q Consensus 350 ~~~~~~sR~l~a~A 363 (584)
..++++++.+..+-
T Consensus 279 ~~~~~~~~~~~~~f 292 (320)
T PF03845_consen 279 LYLYAASEGLSQLF 292 (320)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888887766443
No 51
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.59 E-value=3.9e-12 Score=134.27 Aligned_cols=358 Identities=14% Similarity=0.101 Sum_probs=251.9
Q ss_pred HHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcc-cCcCCceeehHHHhchhHHHHHHHH
Q psy6067 43 LLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRI-SKSGSAYNYTYLSIGEFAAYIIGWN 120 (584)
Q Consensus 43 ~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~-P~~GG~y~~~~~~lG~~~g~~~g~~ 120 (584)
...+|..+|+|++.+|-.. +.+|.. ..+..++++.++......+.|..... |+..+.-..+++.+|+.+|.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~--g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRA--GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 5578888999999999653 455654 77888889999999999999999998 5556788889999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy6067 121 LELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSV 200 (584)
Q Consensus 121 ~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~ 200 (584)
|.+.......+ |.....+.+.+++. +.. +. .+.+..+.+++++.++..+-..|-|...|++++
T Consensus 104 Yff~ly~ll~a-------Y~~~itn~l~sfl~-~ql-------~~--~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~ 166 (443)
T PRK13629 104 YFFAICPLLWI-------YGVTITNTFMTFWE-NQL-------GF--APLNRGFVALFLLLLMAFVIWFGKDLMVKVMSY 166 (443)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHH-hhc-------Cc--CCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99988888888 88777777776543 111 00 022356788888899999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcc-hHHHHHHHHHHHHhhhhhhhhhccccc----
Q psy6067 201 FTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFG-LNGIIVGAAKCFFGFVGFDCIATTGEE---- 275 (584)
Q Consensus 201 ~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~i~~~~~af~G~e~~~~~~~E---- 275 (584)
+...+++.++++.+..+.+.+.++....+.... +.....+ ....+.+++...++|.=.-.++.++..
T Consensus 167 Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~--------~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~ 238 (443)
T PRK13629 167 LVWPFIASLVLISLSLIPYWNSAVIDQVDLGSL--------SLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREE 238 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHhcCccccc--------cccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 999999999999998888766555432210000 0000111 134677888888888766666666655
Q ss_pred cc-----C-cCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC----cCCc-HHHHHHHcCh---------hHHHHH
Q psy6067 276 SK-----N-PKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD----AEAP-FPHIFDSLGW---------PVMKWL 335 (584)
Q Consensus 276 ~k-----n-P~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~----~~~p-~~~~~~~~~~---------~~~~~l 335 (584)
.+ | .+|+..|++..+..+..++|++..+++.+..|+++.. ++.+ +...++...+ ++...+
T Consensus 239 y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~ 318 (443)
T PRK13629 239 YEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYA 318 (443)
T ss_pred hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHH
Confidence 42 2 2477899999999999999999999999999988753 3445 5566666655 778888
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHhcCcc-chhhhccCCCCCcchHHHHHHHHHHHHHHHHh-CHHHHHH-HH-HH
Q psy6067 336 VTVGSLFALLTAMFGALFPLPRILYAMSLDGLL-YDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-KLDQLVD-ML-SI 411 (584)
Q Consensus 336 i~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~l-P~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-~~~~l~~-~~-s~ 411 (584)
..+...++..+|..+...+....+..+.++... ++ -.|.| ++..-....++..+.+....... +.-.+++ ++ -+
T Consensus 319 ~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPi 396 (443)
T PRK13629 319 ASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGD-KTKVS-LGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPI 396 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccC-HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHH
Confidence 888888999999999999999888888864211 10 00223 22222333444444444433333 2333333 43 35
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy6067 412 GTLLAYTIVALSVLILRY 429 (584)
Q Consensus 412 ~~l~~y~l~~la~i~~r~ 429 (584)
..++.|+++..+..+...
T Consensus 397 ia~il~l~P~y~i~kvp~ 414 (443)
T PRK13629 397 IASLLCLLPMYAIRKAPS 414 (443)
T ss_pred HHHHHHHHHHHHHHccHH
Confidence 667777777776654443
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.34 E-value=3.8e-10 Score=118.81 Aligned_cols=351 Identities=15% Similarity=0.135 Sum_probs=222.9
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccC-------cCCceeeh
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISK-------SGSAYNYT 105 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~-------~GG~y~~~ 105 (584)
++++|.+++++.++++.+|.|-...... +...+||+++....+.+++...+.++=.-|+.+|.+ .||...|.
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~-AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi 94 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVAT-AIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYI 94 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHH
Confidence 4589999999999999999998877765 557899998877778888888888877777777653 48899999
Q ss_pred HHHhchhH-HHHHHHHHHHHHHHH-hhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHH
Q psy6067 106 YLSIGEFA-AYIIGWNLELFIEVQ-AFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLM 183 (584)
Q Consensus 106 ~~~lG~~~-g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~ 183 (584)
++.+|.++ +.+.+.....++... ... .....++.++..++ .++++.++++.++.
T Consensus 95 ~~gl~~k~la~~fai~~~~~~~~~~~~~-------Q~nsi~~~~~~~f~-----------------i~~~~~gi~l~~l~ 150 (416)
T PF01235_consen 95 EKGLGSKWLAILFAIFLIIAFGIGFNMV-------QANSIADALSSAFG-----------------IPPWITGIILAILV 150 (416)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHhhcc-----------------ccHHHHHHHHHHHH
Confidence 99999654 444444433333332 223 55555555554443 33467788888888
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCc----chHHHH------
Q psy6067 184 SALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPF----GLNGII------ 253 (584)
Q Consensus 184 ~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~------ 253 (584)
.++..-|+|..+++...+.-+..+..++..+.-+... .++.......++.+. +.++ |..|..
T Consensus 151 ~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n-~~~ip~~~~~If~~A-------F~~~aa~GG~~G~~i~~ai~ 222 (416)
T PF01235_consen 151 ALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIIIN-IDQIPAAFSLIFSSA-------FTPKAAFGGFAGSTIMMAIR 222 (416)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHH-------cCCccchhhHHHHHHHHHHH
Confidence 9999999999999999888888777766655554421 111111111111111 1121 222211
Q ss_pred HHHHHHHHhh---hhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccccc---CcCCcHHHHHHHc
Q psy6067 254 VGAAKCFFGF---VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQ---DAEAPFPHIFDSL 327 (584)
Q Consensus 254 ~~i~~~~~af---~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~---~~~~p~~~~~~~~ 327 (584)
.++.=..|+- .|....++.+.|+++|.|.--.+++-..+-+.++-.++.+.+...-.+... +...-...+++..
T Consensus 223 ~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~ 302 (416)
T PF01235_consen 223 QGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTV 302 (416)
T ss_pred HhhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHh
Confidence 1222234433 467777788889999998776777766666666666666665554332221 1122345566666
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHH
Q psy6067 328 GWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVD 407 (584)
Q Consensus 328 ~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~ 407 (584)
.+++...++.++.++..+++..++.+..-|.+.-+-++ +|...+++.+.+. ...+..+.+.+.+-+
T Consensus 303 ~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~-----------~~~~~~~ri~~i~---~~~~G~~~~~~~vW~ 368 (416)
T PF01235_consen 303 LGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG-----------KKAIWIYRILFIA---MVFIGAVIDLDLVWD 368 (416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------ceEEEeeeehhhh---hhhhhhcccchhHHH
Confidence 66889999999999999999999999988887766521 1333344443322 222222335566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy6067 408 MLSIGTLLAYTIVALSVLILRYS 430 (584)
Q Consensus 408 ~~s~~~l~~y~l~~la~i~~r~~ 430 (584)
+.-+...++-+...++.+.+++.
T Consensus 369 ~~Di~~~lmai~Nlial~lL~~~ 391 (416)
T PF01235_consen 369 LADIANGLMAIPNLIALLLLSKE 391 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 66666655556666666666554
No 53
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.25 E-value=6.8e-09 Score=108.20 Aligned_cols=353 Identities=15% Similarity=0.126 Sum_probs=229.5
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccC-------cCCcee
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISK-------SGSAYN 103 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~-------~GG~y~ 103 (584)
+-++++|.+++++.+.++.+|+|-...... +...+||+++....+.+++...+.+.=+-|+..|.+ .||..+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAt-AI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVAT-AIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHH-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 346789999999999999999998877665 557899997777777788888888888888887762 589999
Q ss_pred ehHHHhch-hHHHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHH
Q psy6067 104 YTYLSIGE-FAAYIIGWNLELFIE-VQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVM 181 (584)
Q Consensus 104 ~~~~~lG~-~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~ 181 (584)
|.++.+|. .+|.+.+.....++. ..... ++...++.++..++ .++++.++++.+
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~v-------Q~NsIa~a~~~af~-----------------~~~~~~gi~la~ 192 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGV-------QSNSIASALANAFG-----------------IPPLVTGIVLAL 192 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchh-------hHHHHHHHHHHhcC-----------------CcHHHHHHHHHH
Confidence 99999995 456666666666655 35566 78888888887776 335788888889
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCc----chH------H
Q psy6067 182 LMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPF----GLN------G 251 (584)
Q Consensus 182 l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~------~ 251 (584)
+...+-..|+|..+++.....-+.-+..++..+.-+... .+........++++. +.+. |+. .
T Consensus 193 l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n-~~~iP~~i~~If~sA-------F~~~aa~GG~~G~~v~~a 264 (452)
T COG1115 193 LVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLN-ISQIPAVIALIFSSA-------FGPKAAAGGFAGYTVAQA 264 (452)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhhHHHHHHHHHhc-------CCchhhhhhhhhHHHHHH
Confidence 999999999999999998888777766665444433321 111100001111100 1111 111 1
Q ss_pred HHHHHHHHHHhh---hhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC--cCCcH-HHHHH
Q psy6067 252 IIVGAAKCFFGF---VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD--AEAPF-PHIFD 325 (584)
Q Consensus 252 ~~~~i~~~~~af---~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~--~~~p~-~~~~~ 325 (584)
+..++.-..|+- .|....++.+.+++||.|.--..+....+-+.++-..+.+.+...-.++... +...+ .++++
T Consensus 265 I~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~ 344 (452)
T COG1115 265 IRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFS 344 (452)
T ss_pred HHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHH
Confidence 223333345544 4566667777889999887655555555545555555655555544443322 33333 44556
Q ss_pred HcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHH
Q psy6067 326 SLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQL 405 (584)
Q Consensus 326 ~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l 405 (584)
...++++..++.+..++..+++..++.+..-|.+.-+-.++. -..+.+.+. +..+.+....+.+.+
T Consensus 345 ~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~~k~-----------~~~~~r~~~---l~~v~~Ga~~~l~~v 410 (452)
T COG1115 345 SHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFGSKK-----------AILLYRLIV---LAMVFLGAVLSLDLV 410 (452)
T ss_pred HhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-----------HHHHHHHHH---HHHHHHhccccHHHH
Confidence 677789999999999999999999999988888775553320 011122221 112222222356666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6067 406 VDMLSIGTLLAYTIVALSVLILRYS 430 (584)
Q Consensus 406 ~~~~s~~~l~~y~l~~la~i~~r~~ 430 (584)
-+++-+..-++-+...++.+.+++.
T Consensus 411 W~laD~~~glMai~NLIal~lL~~v 435 (452)
T COG1115 411 WNLADLFMGLMAIPNLIALLLLSKV 435 (452)
T ss_pred HHHHHHhchHHHHHHHHHHHHHhHH
Confidence 6666666666666666677776654
No 54
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.22 E-value=8.3e-09 Score=109.31 Aligned_cols=347 Identities=15% Similarity=0.158 Sum_probs=205.7
Q ss_pred cccCHHHHHHHHhhhhhhhh-HhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccC--c-----CCceeeh
Q psy6067 34 RVLGLTDLTLLGIGATLGVG-VYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISK--S-----GSAYNYT 105 (584)
Q Consensus 34 r~ls~~~~~~l~ig~~iG~g-if~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~--~-----GG~y~~~ 105 (584)
+++|.+++++..+++.+|.| +...+.. ...+||+++....+++++...+.+.-.-|+.++.+ + ||...|.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~A--i~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATA--IAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHH--HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 56999999999999999998 5444433 47789987555555666666666665556655542 2 3444888
Q ss_pred HHHhc-hhHHHHHHHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHH
Q psy6067 106 YLSIG-EFAAYIIGWNLELFI-EVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLM 183 (584)
Q Consensus 106 ~~~lG-~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~ 183 (584)
++.++ |.+|.+.+.. .+.+ ...... +....++.++..++ .+.++.++++.++.
T Consensus 123 ~~gl~~k~lg~lfa~~-~i~~f~~~~~~-------Q~nsi~~~~~~~~~-----------------~~~~v~~i~l~~l~ 177 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF-LIASFGIGNMV-------QANAIASALSNAFN-----------------VPKLVTGIVLTVLT 177 (425)
T ss_pred HHHhCccHHHHHHHHH-HHHHHhhhHHH-------HHHHHHHHHHHHcC-----------------CcHHHHHHHHHHHH
Confidence 99876 6677776666 4444 333444 66777776664443 23567777777777
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCc----chHHH------H
Q psy6067 184 SALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPF----GLNGI------I 253 (584)
Q Consensus 184 ~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~------~ 253 (584)
..+..-|+|...++...+.-+.....++..+.... .+.++..+....++++. +.++ |..|. -
T Consensus 178 ~~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~A-------F~~~a~~GG~~G~~v~~ai~ 249 (425)
T TIGR00835 178 ALIIFGGLKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSA-------FGGDAAAGGFAGSTVAQAIM 249 (425)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHh-------CCchhhHhHHHHHHHHHHHH
Confidence 77877799999999999888887776554443322 12222221111222111 2222 12221 1
Q ss_pred HHHHHHHHhh---hhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccc-c-cCcCCcH-HHHHHHc
Q psy6067 254 VGAAKCFFGF---VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYY-E-QDAEAPF-PHIFDSL 327 (584)
Q Consensus 254 ~~i~~~~~af---~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~-~-~~~~~p~-~~~~~~~ 327 (584)
.++.=..|+- .|....++.+.|++||.|.--.++....+-+.++-.++.+.+...-.++ . ..+...+ ..+++..
T Consensus 250 ~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~ 329 (425)
T TIGR00835 250 IGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYG 329 (425)
T ss_pred HhhHHHHhccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHH
Confidence 1233334443 4666777778899999886655555555545555555555444432222 1 1112223 3445555
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHH
Q psy6067 328 GWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVD 407 (584)
Q Consensus 328 ~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~ 407 (584)
.++++..++.++.++..+++..++.+..-+.+.-+-.++ ...+++.+.+. ...+..+.+++.+-+
T Consensus 330 ~g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~------------~~~~~r~~~~~---~~~~g~~~~~~~vw~ 394 (425)
T TIGR00835 330 LGSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNK------------KVKLYRLVFLA---AVFVGAFLSLDLVWN 394 (425)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------ccceeeehhhH---HHHHHHHhhHHHHHH
Confidence 566888999999999999999999998888776553322 12233333222 222223335565555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy6067 408 MLSIGTLLAYTIVALSVLILRYS 430 (584)
Q Consensus 408 ~~s~~~l~~y~l~~la~i~~r~~ 430 (584)
+.-...-+.-+...++.+.+++.
T Consensus 395 ~~D~~~~lm~i~Nlial~~L~~~ 417 (425)
T TIGR00835 395 LADLSMGLMAIPNLIAILLLRKV 417 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555555555543
No 55
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=99.11 E-value=1.3e-10 Score=84.79 Aligned_cols=51 Identities=65% Similarity=1.223 Sum_probs=49.8
Q ss_pred ccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccccc
Q psy6067 526 FKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHS 576 (584)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 576 (584)
||+|++|++|+++++.|+|+|.+++..+|+++++|+++|.++|+.|++||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 789999999999999999999999999999999999999999999999986
No 56
>PRK11375 allantoin permease; Provisional
Probab=99.05 E-value=4.2e-06 Score=91.67 Aligned_cols=339 Identities=12% Similarity=-0.003 Sum_probs=169.2
Q ss_pred CCCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcCh---HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCce
Q psy6067 26 SGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGP---SVVISFIIAALASALSGLCYVEFASRISKSGSAY 102 (584)
Q Consensus 26 ~~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~---~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y 102 (584)
.++-++.+|+-++++.+.+=++..+..+.+...+... . .|- .++++.+++.++..+.....+.++.++.. +..
T Consensus 17 l~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l-~-~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~ 92 (484)
T PRK11375 17 LLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF-I-LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFA 92 (484)
T ss_pred CCcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHH-H-ccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--Chh
Confidence 4444556788999999988777666555543333322 1 232 35556666655555555444444444322 466
Q ss_pred eehHHHhchhHHHHHHHHHH-HHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCcccc-ccC--CCCCCchhhHHHHH
Q psy6067 103 NYTYLSIGEFAAYIIGWNLE-LFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLT-TDR--YSFLSTYPDFIAAG 178 (584)
Q Consensus 103 ~~~~~~lG~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~--~~~~~~~~~ii~~~ 178 (584)
...+..||.+-+.+.+.... +..+...+. +....++.+...+... .+.+.. +.+ ....+....+..++
T Consensus 93 v~sR~sFG~~Gs~l~~~~rai~~~igW~~v-------qt~~~g~al~~~l~~i-~~~~~~~~~~~~~~g~~~~~~i~~~i 164 (484)
T PRK11375 93 MILRASYGVRGALFPGLLRGGIAAIMWFGL-------QCYAGSLALLILIGKI-WPGFLTLGGDFTLLGLSLPGLITFLI 164 (484)
T ss_pred HhHHHHHccccchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh-cccccccccccccCCCcHHHHHHHHH
Confidence 77888899876566666553 344444455 5555555554433200 000000 000 00111222333445
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHH
Q psy6067 179 IVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAK 258 (584)
Q Consensus 179 ~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~ 258 (584)
+.++.+.+.+.|.|...+++.+...+.++..+.+.+..+...+.+... .... .+..+..+. ...+..++..
T Consensus 165 ~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~---~~~~-----~~~~~~~~~-~~~~~~~i~~ 235 (484)
T PRK11375 165 FWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIF---DYIP-----SGIQKAENS-GFLFLVVINA 235 (484)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhh---ccCc-----ccccCCcch-HHHHHHHHHH
Confidence 556667777899999999998888887766665555544433211110 0000 000000111 2234444433
Q ss_pred HHHhhh-hhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhh-ccccccCcCCcHHHHHHHcChhHHHHHH
Q psy6067 259 CFFGFV-GFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLI-IPYYEQDAEAPFPHIFDSLGWPVMKWLV 336 (584)
Q Consensus 259 ~~~af~-G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~-~p~~~~~~~~p~~~~~~~~~~~~~~~li 336 (584)
.+-++. +.-..+..+...|++ |+.-++...++.+...+.....+..... ...-.....+| .+++...+......+.
T Consensus 236 vig~~~~~~~~~~D~tRy~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~~~~~~~~~~~a 313 (484)
T PRK11375 236 VVAVWAAPAVSASDFTQNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQRWDSLFASFFA 313 (484)
T ss_pred HHHHHHHHHccccchhcccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHHHhcchHHHHHH
Confidence 222332 444566777777876 4445666666655554443333322111 11111112333 4444444444455555
Q ss_pred HHHHHHHHHHHHH-HhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh
Q psy6067 337 TVGSLFALLTAMF-GALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF 400 (584)
Q Consensus 337 ~~~~~~s~~~s~~-~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~ 400 (584)
.+..++++.++.. ..++.++ +.-.+.+||+. | + +++.++.++++.++....
T Consensus 314 ~l~~v~a~~~tN~~~N~ys~~-----~~l~~l~pk~i---~-~----~~~~~i~~iig~~~~pw~ 365 (484)
T PRK11375 314 VLVILMTTISTNATGNIIPAG-----YQIAALAPTKL---T-Y----KNGVLIASIISLLICPWK 365 (484)
T ss_pred HHHHHHHHHHHHHHhhcccHH-----HHHHHhCcCcc---c-h----hhHHHHHHHHHHHhccHH
Confidence 5666777777644 4665543 33356677543 2 1 246666666666655443
No 57
>KOG1303|consensus
Probab=99.01 E-value=1.5e-07 Score=100.64 Aligned_cols=355 Identities=13% Similarity=0.046 Sum_probs=210.0
Q ss_pred CccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHH-HHHHHHHHHHHHHHHHHHHHhhhcccCcCC-----c
Q psy6067 28 SREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSV-VISFIIAALASALSGLCYVEFASRISKSGS-----A 101 (584)
Q Consensus 28 ~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~-~l~~ll~~l~~l~~al~~aEL~s~~P~~GG-----~ 101 (584)
.+...+|+-|+++..+-.++.++|.|+..+|.. ....|... ++..++.+++.+-++....++-...+.-.| .
T Consensus 30 ~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A--~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y 107 (437)
T KOG1303|consen 30 DPITPSRGGSWWQAAFHIINALIGAGVLSLPYA--LAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRY 107 (437)
T ss_pred CccccCCCCcceehhhheehhhhhhhhhhhHHH--HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCh
Confidence 334557889999999999999999999999854 35678754 778888888888888878888777777666 5
Q ss_pred eeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHH
Q psy6067 102 YNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVM 181 (584)
Q Consensus 102 y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~ 181 (584)
-+-.+++||++.-.++++...+........ +....++.+..+++....++. ... ...+..+.+.+.+.
T Consensus 108 ~dl~~~afG~~~~~iv~~~~~~~~fg~~v~-------y~il~~~~L~~~~~~~~~~~~----~l~-~~~f~iif~~i~~~ 175 (437)
T KOG1303|consen 108 PDLGQAAFGPKGRLLVSVLQYLELFGICVV-------YIILAGDNLKALFPIVSLNDN----SLD-KQYFIIIFGLIVLP 175 (437)
T ss_pred HHHHHHHhCCCceEeeeHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCccc----ccc-ceehhhhHHHHHHH
Confidence 566778899777567777777666666666 888888888888872222110 000 11111222222222
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHH
Q psy6067 182 LMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFF 261 (584)
Q Consensus 182 l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~ 261 (584)
+.. +........+........+.......+.+...+-..+.. ..... ...+.+. .+.++....|
T Consensus 176 ~s~---lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~--~~~~~---------~~~~~~~--~f~a~g~iaF 239 (437)
T KOG1303|consen 176 LSQ---LPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAP--SGGYL---------DLGTIPT--VFTALGIIAF 239 (437)
T ss_pred HHH---CCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCc--ccCcc---------cCCCCcc--hhhhhhheee
Confidence 222 333334444444444444444444444444432111110 00000 0111111 1667788899
Q ss_pred hhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHc-ChhHHHHHHHHHH
Q psy6067 262 GFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSL-GWPVMKWLVTVGS 340 (584)
Q Consensus 262 af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~-~~~~~~~li~~~~ 340 (584)
+|.|......+-..+|+|+| +.|+.+.+..+++.+|+...+.-..+.+++..++ ....+ ...|.....++.+
T Consensus 240 af~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~------il~s~~~p~~~~~~ani~i 312 (437)
T KOG1303|consen 240 AYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDN------ILLSLQPPTWLIALANILI 312 (437)
T ss_pred eecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchh------hhhcccCchhHHHHHHHHH
Confidence 99999999999999999988 9999999999999999999998888777664321 22222 3556666666666
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhcC--ccchhhhccCCCCCcchHHHHHH--HHHHHHHHHH-hCHHHHHHHHH--HHH
Q psy6067 341 LFALLTAMFGALFPLPRILYAMSLDG--LLYDCFSYVSPRTKTPVLSSLLT--GALTAVLSAV-FKLDQLVDMLS--IGT 413 (584)
Q Consensus 341 ~~s~~~s~~~~~~~~sR~l~a~A~dg--~lP~~f~~~~~~~~~P~~Aill~--~il~~~~~~~-~~~~~l~~~~s--~~~ 413 (584)
.+-.+++..- .+.-++...+.. .-++.+.+ | ..+.+.++=+ .+.+.+++.. ..|+.+.++.. ...
T Consensus 313 ~~h~i~s~~i----~a~pl~~~~E~~~~~~~~~~~~---~-~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~ 384 (437)
T KOG1303|consen 313 VLHLIGSYQI----YAQPLFDVVEKLIGVKHPDFKK---R-SLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFW 384 (437)
T ss_pred HHHHhhhhhh----hhcchHHHHHHHhccCCccccc---c-ccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHH
Confidence 6655554433 233334433321 11111222 1 2122221111 1112222222 24566655554 345
Q ss_pred HHHHHHHHHHHHHH
Q psy6067 414 LLAYTIVALSVLIL 427 (584)
Q Consensus 414 l~~y~l~~la~i~~ 427 (584)
...++++++.++..
T Consensus 385 p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 385 PLTFILPCLMYLLI 398 (437)
T ss_pred HHHHHHHHHHHHHh
Confidence 77888888888777
No 58
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.95 E-value=1.2e-06 Score=88.02 Aligned_cols=266 Identities=17% Similarity=0.153 Sum_probs=167.1
Q ss_pred HHHhhhhhhhhHhHhHHHhHhhhcC---hHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHH
Q psy6067 43 LLGIGATLGVGVYVLAGSVAKNQAG---PSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGW 119 (584)
Q Consensus 43 ~l~ig~~iG~gif~~~~~v~~~~aG---~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~ 119 (584)
+..+|.++|+| |..-..+. +..| ..+.++.++.+++....+....|+++++.. ...-.+.++.+||.++-..-.
T Consensus 10 f~~ig~~vGAG-fAsGqEi~-QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 10 FAFIGTVVGAG-FASGQEIM-QFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHhhccc-ccchHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHH
Confidence 34567889999 55444433 4444 448999999999999999999999999854 356788999999999987776
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh-hhhhHHHH
Q psy6067 120 NLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG-VSESTRLN 198 (584)
Q Consensus 120 ~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G-~r~~~~~~ 198 (584)
...+.....+.. ...+.++.+.+.++ .+.++-+++++.+..++-.++ .+-.-+++
T Consensus 87 ~iif~lf~~~vV-------M~AGags~~~e~~~-----------------lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 87 IIIFFLFSTAVV-------MLAGAGSLLEEMFG-----------------LPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred HHHHHHHHHHHH-------HhccchhHHHHHhC-----------------ccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 655543333333 44455557777776 222344455555555666666 77776767
Q ss_pred HHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHH-hhhhhhhhhccccccc
Q psy6067 199 SVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFF-GFVGFDCIATTGEESK 277 (584)
Q Consensus 199 ~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~-af~G~e~~~~~~~E~k 277 (584)
.+.+-+.+..+.............+.++.... . .++ |.... .....+ ..........+++|+|
T Consensus 143 ~iI~P~LIi~l~~v~~~~~f~~~~~~a~~~~~---------~----~~~-W~~~~--~~Y~alNi~~~~avLv~lg~~~~ 206 (349)
T COG3949 143 GIITPFLIIILVLVTLSFQFTNLGNAAQIVLT---------K----QGN-WKASA--VGYGALNILVAVAVLVPLGGRME 206 (349)
T ss_pred eeHHHHHHHHHHHHHHHHHHhhccchhhhcCC---------c----CCC-hHHHH--HhhhhHHHHhHhHhhhhhccccc
Confidence 66666555553332222222111111111000 0 111 21111 111111 1234445667789999
Q ss_pred CcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhch
Q psy6067 278 NPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFP 354 (584)
Q Consensus 278 nP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~ 354 (584)
++ |+..+|-..+-++.+++..+....+....+ +..+.+-|...+++++. +....++.+......+++..+.+++
T Consensus 207 ~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 207 SR-KVSGIGGLIGGLILGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred cc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 777788888888888888888888777655 33456779999999887 5566777777777888888777755
No 59
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.93 E-value=1.2e-05 Score=85.38 Aligned_cols=239 Identities=10% Similarity=0.026 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q psy6067 70 VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQ 149 (584)
Q Consensus 70 ~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~ 149 (584)
++++.+++.++..+.....++++.+...+ .+.-.+..||..-+.+.....++.++-..+. +....++....
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v-------~~~l~~~a~~~ 124 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGV-------NVILSGIAIGS 124 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHH-------HHHHhcccccc
Confidence 77888888888888777788887665443 4555666799888888877777777666666 55555443111
Q ss_pred HhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC--CCccc
Q psy6067 150 LESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNP--RNWAI 227 (584)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~--~~~~~ 227 (584)
. ...+.....++..++++...++|.|...+++++.........+......+-..+. ..+.
T Consensus 125 ~-----------------~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~- 186 (442)
T COG1457 125 G-----------------TGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWV- 186 (442)
T ss_pred C-----------------CCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeec-
Confidence 1 1223345555666688889999999999999999988877766666555431111 1111
Q ss_pred ccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhh-hhhcccccccCcC--CCchhHHHHHHHHHH-HHHHHHHH
Q psy6067 228 RKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFD-CIATTGEESKNPK--RDIPLSILLSLFIVF-VCYLAIAI 303 (584)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e-~~~~~~~E~knP~--k~ip~ai~~~i~i~~-viyil~~~ 303 (584)
-.|.++..+..++..++-.+..|- .++.++.-.|+|+ |.+ .+...+..... ..+++...
T Consensus 187 ----------------~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~-~~~~~G~~l~~~~~~ilGa~ 249 (442)
T COG1457 187 ----------------KGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAF-LAAVLGFFLGTSFMMILGAA 249 (442)
T ss_pred ----------------cCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 112334455555554444444333 4555666666654 222 22222222222 22222222
Q ss_pred HHHhhccccccCcCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q psy6067 304 VLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILY 360 (584)
Q Consensus 304 ~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~ 360 (584)
. ....+.++ +..+.....|+ +.....+.+.++..++....+++++=-..
T Consensus 250 ~-a~a~g~~~-----~~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~ 298 (442)
T COG1457 250 L-AAAAGNAD-----SIADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFA 298 (442)
T ss_pred H-HHhcCCCc-----hHHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2 22222222 45555555554 44555566666777766666666544433
No 60
>PTZ00206 amino acid transporter; Provisional
Probab=98.89 E-value=3.6e-06 Score=91.92 Aligned_cols=255 Identities=13% Similarity=0.077 Sum_probs=149.7
Q ss_pred HHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHH
Q psy6067 39 TDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYII 117 (584)
Q Consensus 39 ~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~ 117 (584)
.+..+-.+.+++|+|+...|.. ...+|.. ..+..++.++++........+.+.+ ++.-....-.++++||....++
T Consensus 63 ~~s~fnL~~~~iGaGILsLP~A--f~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~~v 139 (467)
T PTZ00206 63 AASAFNIASSTVGAGIVGLPSA--ANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSYYV 139 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHHHH
Confidence 5566667788899999999865 3566753 5555666666666666666665555 3333455566777899999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHH
Q psy6067 118 GWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRL 197 (584)
Q Consensus 118 g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~ 197 (584)
.+...+.....+.+ +....++.++..+.+...++++.... ........+.+++++-+.-.+.++..+++
T Consensus 140 ~~~~~~~~~G~cv~-------YlIiigd~l~~~l~~~~~~~~~~~~~----~~r~~~~~i~~~i~lPLs~~r~i~~L~~~ 208 (467)
T PTZ00206 140 AATRAFHGFSACVA-------YVISVGDILSATLKGTNAPDFLKQKS----GNRLLTSLMWLCFMLPLVIPRHIDSLRYV 208 (467)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCCccchhhhcc----CcEEeeeehhhhHhhhcccccchHHHHHH
Confidence 99988888888888 99999998888876322222221000 00001111111122223334455555555
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhccccccc
Q psy6067 198 NSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEESK 277 (584)
Q Consensus 198 ~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~~E~k 277 (584)
..+.....+...+.+++.......+++.+... ... ....+ -..... ....+.++....|+|.+.......-+|+|
T Consensus 209 S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~--~~~-~~~~~-~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~ 283 (467)
T PTZ00206 209 STIAVSFMVYLVIVIVVHSCMNGLPENIKNVS--VGK-DDNAE-IILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMT 283 (467)
T ss_pred HHHHHHHHHHHHhhhhhhhhcccCcccccccc--cCC-CCCCc-eEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhc
Confidence 44433322222222222222211111111000 000 00000 000111 12467788899999999999999999999
Q ss_pred CcC-CCchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy6067 278 NPK-RDIPLSILLSLFIVFVCYLAIAIVLTLIIPYY 312 (584)
Q Consensus 278 nP~-k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~ 312 (584)
||+ |+..+.+..+..++.++|.+..+.-....+++
T Consensus 284 ~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 284 NRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 863 67888999999999999999998877777655
No 61
>PLN03074 auxin influx permease; Provisional
Probab=98.88 E-value=5.1e-06 Score=90.58 Aligned_cols=238 Identities=12% Similarity=0.008 Sum_probs=127.7
Q ss_pred cccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHH----HHhhhcccCcCCce-----e
Q psy6067 34 RVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCY----VEFASRISKSGSAY-----N 103 (584)
Q Consensus 34 r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~----aEL~s~~P~~GG~y-----~ 103 (584)
+.-+..+.+.-.+.+.+|.|+..+|.. ...+|.. ..+..++.+++..-++... -|...+.|+.+-.| .
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~A--f~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYS--FSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHH--HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 345666666668888899999999865 3567753 5555666666655555543 45666666643222 1
Q ss_pred e---hHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHH
Q psy6067 104 Y---TYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIV 180 (584)
Q Consensus 104 ~---~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l 180 (584)
| ..+.+||.++.+......+.....+.. +....++.+..+.. .. ....+..+++.+.+
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~-------~li~~~~~~~~l~~---------~~---~~~~~~~i~~~v~~ 182 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVI-------QLIACASNIYYIND---------NL---DKRTWTYIFGACCA 182 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHH-------HHHHHhhhhhhhCC---------Cc---CCCeEEeehHHHHH
Confidence 2 333578887776654444333333333 34433322222111 00 01222223333333
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHH
Q psy6067 181 MLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCF 260 (584)
Q Consensus 181 ~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~ 260 (584)
.+.. +...|..+++..+.....+.....+.+..+...+.+.+.. . .+.++..++.++..+.
T Consensus 183 ~~~~---i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~--------------~--~~~~~~~~f~~~~~i~ 243 (473)
T PLN03074 183 TTVF---IPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH--------------S--GPTKLVLYFTGATNIL 243 (473)
T ss_pred HHHH---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--------------C--CchhHHHHHHHHHHHH
Confidence 3222 2334444443333222222222222222222221111110 0 1223555667777789
Q ss_pred HhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy6067 261 FGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYY 312 (584)
Q Consensus 261 ~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~ 312 (584)
|+|.|.-....+-.|+|||+| .++....+...+.+.|+...+......+++
T Consensus 244 faf~g~~v~~~I~~~M~~P~~-F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 244 YTFGGHAVTVEIMHAMWKPQK-FKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred HHhcccccHHHHHHhccChhc-ccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 999999999999999999954 888888888888888877766555555543
No 62
>KOG1304|consensus
Probab=98.85 E-value=2.2e-06 Score=90.58 Aligned_cols=345 Identities=13% Similarity=0.093 Sum_probs=193.3
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH--HHHHHHHHHHHHHH---HHHHHHHhhhcccCc---------
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS--VVISFIIAALASAL---SGLCYVEFASRISKS--------- 98 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~--~~l~~ll~~l~~l~---~al~~aEL~s~~P~~--------- 98 (584)
++..+..+.+.--+-+++|+|++..|.. ...+|.. .+...+++.+...+ ...+--+++++..+.
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~A--Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLA--FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHH--HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 3457788888888888999999998864 4667752 44444555444333 455566777664111
Q ss_pred ---CCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHH
Q psy6067 99 ---GSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFI 175 (584)
Q Consensus 99 ---GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii 175 (584)
-+.+.| .|.+||...+++-....+.+...++. +....++-+++.+. ..... .....+.
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~v-------Y~VFva~nl~~i~~-~~~~~----------~~s~~~~ 182 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCV-------YLVFVATNLKQIVD-EHSPG----------VLSVRLY 182 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhE-------EeeeHHhhHHHHHh-ccCCC----------CccHHHH
Confidence 122335 77789999999999999999998888 88888888888776 11110 1112222
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-CCcccccCCCccccccCCCCCCCCcchHHHHH
Q psy6067 176 AAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNP-RNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIV 254 (584)
Q Consensus 176 ~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 254 (584)
..+.+... +-+--+|..+++.-+..+..+..++.+.++....... .+....+ .+ .++.++..
T Consensus 183 i~~~~~~~--lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~-------------~~--~~~~~~~l 245 (449)
T KOG1304|consen 183 ILIQLPPL--LLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLP-------------AV--TGWSGLPL 245 (449)
T ss_pred HHHHHHHH--HHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccc-------------cc--cchhhhHH
Confidence 22222222 2222344444444444444444444444433332111 1111100 01 12566777
Q ss_pred HHHHHHHhhhhhhhhhcccccccCcCCCch---hHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChhH
Q psy6067 255 GAAKCFFGFVGFDCIATTGEESKNPKRDIP---LSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPV 331 (584)
Q Consensus 255 ~i~~~~~af~G~e~~~~~~~E~knP~k~ip---~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~ 331 (584)
.+..+.|+|-|...+-.+=+++|+|++ .| +.+-.++.+++++|....+.-....+++...+-. .++...+
T Consensus 246 f~GtaifafEGig~VLPlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sIT------LNLP~~~ 318 (449)
T KOG1304|consen 246 FFGTAIFAFEGIGMVLPLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSIT------LNLPQEI 318 (449)
T ss_pred HHHHHHHHhccceEEEehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEE------ecCCccH
Confidence 788999999999999999999999954 77 9999999999999999988877777766432200 1122233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCC---CCCcchHHHHHHHHHHHHHHHHhCHHHHHHH
Q psy6067 332 MKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSP---RTKTPVLSSLLTGALTAVLSAVFKLDQLVDM 408 (584)
Q Consensus 332 ~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~---~~~~P~~Aill~~il~~~~~~~~~~~~l~~~ 408 (584)
+...+-+...++.+.+.--.++-.-+.+..- +.+.+++-.+ ++..-+.-++++.+++.+ +..++.++++
T Consensus 319 l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~-----i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~---iPnL~~fisL 390 (449)
T KOG1304|consen 319 LSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG-----IRKKFSENRKKLLEYALRVFLVLLTFLIAVA---VPNLALFISL 390 (449)
T ss_pred HHHHHHHHHHHHHHHcCchhhhhhHHHHHHh-----HHHhcCcchhHHHHHHHHHHHHHHHHHHHHH---CCcHHhhHHH
Confidence 4444444444444444333344444444332 2333331100 111112222222222222 4467877777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q psy6067 409 LSIGTLLAYTIVALSVLILRYS 430 (584)
Q Consensus 409 ~s~~~l~~y~l~~la~i~~r~~ 430 (584)
.....+..-.++.=+.+...-.
T Consensus 391 VGs~~~s~L~li~P~liel~~~ 412 (449)
T KOG1304|consen 391 VGSVSCSLLALIFPPLIELITF 412 (449)
T ss_pred HHHHHHHHHHHHccHHHHHHHh
Confidence 7655544444444444444433
No 63
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.73 E-value=3.8e-09 Score=113.31 Aligned_cols=361 Identities=15% Similarity=0.122 Sum_probs=203.6
Q ss_pred cccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhccc---CcCCceeehHHHh
Q psy6067 34 RVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRIS---KSGSAYNYTYLSI 109 (584)
Q Consensus 34 r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P---~~GG~y~~~~~~l 109 (584)
|+-|.++.++..+..++|+|++..|... ..+|.. ..+..++.++++........|.....| +.-...+-.++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af--~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAF--AQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHH--HHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 4678899999999999999999999753 456754 677777788888888888888888765 3334445567889
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHh
Q psy6067 110 GEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISW 189 (584)
Q Consensus 110 G~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~ 189 (584)
||+.+.++.....+........ +....++.+...++ ....+ . ......+.++...+..-+.
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~-------y~i~~~~~l~~~~~-~~~~~-------~--~~~~~~~~~i~~~i~~pls-- 139 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVA-------YLIIIGDSLSSLIP-SFFGD-------L--FISRYVWIIIFALIVLPLS-- 139 (409)
T ss_pred cccccccccchheeccccccce-------eEEEeeeeeecccc-ccccc-------c--ccccccccccccccccccc--
Confidence 9999988888877776666666 66666666666665 11100 0 0111111111111111111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH--hhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhh
Q psy6067 190 GVSESTRLNSVFTFLNLGTVVV--IVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFD 267 (584)
Q Consensus 190 G~r~~~~~~~~~~~~~l~~ll~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e 267 (584)
-.|..+.+........+..+.. +.+.........+..+.. ....+.+..+.++..++....++|.+..
T Consensus 140 ~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~faf~~~~ 209 (409)
T PF01490_consen 140 FLKNLKSLRYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVP----------SPPVWPFISFSGFFSAFGIIIFAFSCHP 209 (409)
T ss_pred ccchhhHHHHHhhhhhhccceeeeeecceeeeeecccccccc----------cccccccchhhHHHHhhhhhhhhhhccc
Confidence 1233333332222222222111 111111111111100000 0001223345678899999999999999
Q ss_pred hhhcccccccCcCC--CchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChh-HHHHHHHHHHHHHH
Q psy6067 268 CIATTGEESKNPKR--DIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWP-VMKWLVTVGSLFAL 344 (584)
Q Consensus 268 ~~~~~~~E~knP~k--~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~-~~~~li~~~~~~s~ 344 (584)
......+|+|||+| ++.+....+..++.++|.+..+......+++..+ .+..++... +...+..+...+..
T Consensus 210 ~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~------~il~n~~~~~~~~~i~~~~~~i~~ 283 (409)
T PF01490_consen 210 NLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQG------NILLNLPNDDVLIIIARILLVISL 283 (409)
T ss_pred ccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecc------hhhhcCCCcccccccccccchhhh
Confidence 99999999999875 4569999999999999999998877766554211 223333222 34444445555555
Q ss_pred HHHHHHhhchhHHHHHHHHhcC--ccchhhhccCCCCCcchHHH-HHHHHHHHHHH-HHhCHHHHHHHHHH--HHHHHHH
Q psy6067 345 LTAMFGALFPLPRILYAMSLDG--LLYDCFSYVSPRTKTPVLSS-LLTGALTAVLS-AVFKLDQLVDMLSI--GTLLAYT 418 (584)
Q Consensus 345 ~~s~~~~~~~~sR~l~a~A~dg--~lP~~f~~~~~~~~~P~~Ai-ll~~il~~~~~-~~~~~~~l~~~~s~--~~l~~y~ 418 (584)
+.+..-......+.+...-+++ .-++ ..+..++....+... ....+++.+++ ...+++.+.++... ...+.|+
T Consensus 284 ~~s~pl~~~p~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi 362 (409)
T PF01490_consen 284 LLSYPLQLFPARNSLENLLFKRAASSRD-SPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFI 362 (409)
T ss_pred hhccccccchhHhhhhhheecccccccc-ccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHH
Confidence 5544444555555555444332 0000 000000100111111 11122222222 23367777777743 3478999
Q ss_pred HHHHHHHHHhhccC
Q psy6067 419 IVALSVLILRYSED 432 (584)
Q Consensus 419 l~~la~i~~r~~~~ 432 (584)
++.+.+++.+++++
T Consensus 363 ~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 363 LPALLYLKLFKRKR 376 (409)
T ss_pred HHHHHHHHhhcccc
Confidence 99999999887764
No 64
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.68 E-value=0.00045 Score=73.83 Aligned_cols=381 Identities=14% Similarity=0.030 Sum_probs=208.5
Q ss_pred CcccccCCCCCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhc-Ch-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy6067 18 SEDAYDDGSGSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQA-GP-SVVISFIIAALASALSGLCYVEFASRI 95 (584)
Q Consensus 18 ~~~~~~~~~~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~a-G~-~~~l~~ll~~l~~l~~al~~aEL~s~~ 95 (584)
+++...+|..+.++.+|+-++++.+++=.+...-.+-+...+... +.+ ++ .++++.+++-++....+...+..+.++
T Consensus 23 ~~~lyN~DL~P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~-~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~ 101 (497)
T COG1953 23 SSFLYNEDLAPTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLF-ELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKY 101 (497)
T ss_pred CccccCCCCCCCccccCcchHHHHHHHHHHhhccHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 334444455565677899999999999777776666565555433 333 33 388888888888877777777666665
Q ss_pred cCcCCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccC---CCCCCchh
Q psy6067 96 SKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDR---YSFLSTYP 172 (584)
Q Consensus 96 P~~GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~ 172 (584)
-. +.-...+..||-.-+-.-.....+..+..-.. ++...++.++.++. .-.+.+..+.. ....++.+
T Consensus 102 gI--pFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGv-------qty~Gg~av~llL~-~i~~~~~~~~~~~~~lg~tt~~ 171 (497)
T COG1953 102 GI--PFPVLSRASFGIYGANFPALIRAIVAIVWYGV-------QTYAGGLAVNLLLG-SIFPSLLIPNTLSPLLGLTTLE 171 (497)
T ss_pred CC--CchHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHH-HhccccccCCccccccCCcHHH
Confidence 33 24455777788777666666666655666666 66666666665554 11111111111 11123333
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHH
Q psy6067 173 DFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGI 252 (584)
Q Consensus 173 ~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 252 (584)
.+.-+++-++...+-..|++..+|++.+......+..+.+.+....+.+...... +.+. +..+. ++.+..+
T Consensus 172 ~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~---~~p~-----~~~~~-~~~~w~~ 242 (497)
T COG1953 172 LICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILG---ELPA-----GTVSG-SNSSWAF 242 (497)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccc---cCCC-----CCCCc-chhHHHH
Confidence 3444455556677888999999999999999999988888888877654321110 0010 00001 1112234
Q ss_pred HHHHH-HHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc-CCcHHHHHHHcChh
Q psy6067 253 IVGAA-KCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA-EAPFPHIFDSLGWP 330 (584)
Q Consensus 253 ~~~i~-~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~-~~p~~~~~~~~~~~ 330 (584)
+.++. ...+--+..-..+..+.+.|+| |+.-++-++++-+...+.-+.........-.- .++ -..-.++.++....
T Consensus 243 ~~~~~~~v~~~Atl~lN~~DFsRfa~s~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~l-yG~~~w~P~di~~~~~~~ 320 (497)
T COG1953 243 LAGIAAWVGFWATLALNIPDFTRFAKSQ-KAQIWGQLVGLPVNFALFSLIGVVVTSASYIL-YGETIWDPLDIVARFLSG 320 (497)
T ss_pred HHHHHHHHHHHHHHhcCCchhhcccCCh-hhhhhccchhhhHHHHHHHHHHhhHHHHHHHh-hCcccCCHHHHHHHhccc
Confidence 44332 1222224455566677777776 44556666666666655555555443321110 111 12345556666544
Q ss_pred HHHH-HHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh---C---HH
Q psy6067 331 VMKW-LVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF---K---LD 403 (584)
Q Consensus 331 ~~~~-li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~---~---~~ 403 (584)
.... +..+..++++.++..+.=..++-. . -.+.+||.... .++.+++.++++++.-.- + +.
T Consensus 321 ~~~~fl~~l~~~iati~~Ni~aN~vsp~~--D--~s~l~Pk~in~--------krg~liaA~ial~~~PW~l~~s~s~f~ 388 (497)
T COG1953 321 FYAAFLAGLTFAVATISTNIAANIVSPGY--D--LSALFPKYINI--------KRGGLIAAIIALLICPWNLLESSSSFT 388 (497)
T ss_pred hHHHHHHHHHHHHHHHhhhHHhccCChHH--H--HHHhcccccch--------hhhHHHHHHHHHHHcChHHHcCccHHH
Confidence 4444 666666666666544433322211 1 12556665442 345666666666543222 1 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy6067 404 QLVDMLSIGTLLAYTIVALSVLILRYSED 432 (584)
Q Consensus 404 ~l~~~~s~~~l~~y~l~~la~i~~r~~~~ 432 (584)
...+..+...--...+.+.-++..||++.
T Consensus 389 ~~L~~yg~~LgpiaGVmiaDyflirk~~~ 417 (497)
T COG1953 389 TFLGSYGVFLGPIAGVMIADYFLVRKGRL 417 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 23333333333334455666777777664
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=98.65 E-value=0.00024 Score=76.27 Aligned_cols=155 Identities=15% Similarity=0.056 Sum_probs=91.4
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchh
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEF 112 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~ 112 (584)
+|+ +.++..+.=.+..+....+...+.+.....=..++++.+++.++........+..+.++-. +.....|..||..
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~FG~~ 84 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFSFGEK 84 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHHhchh
Confidence 344 7787666655544444444444443211111236777777766666555555555544322 3556677779988
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhh
Q psy6067 113 AAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVS 192 (584)
Q Consensus 113 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r 192 (584)
-+.+.+....+..+...+. +....+..+...++ . +. ....+++.++.......|.|
T Consensus 85 Gs~l~~~~~~i~~igW~av-------~~~~~~~~l~~~~~-~--------------~~--~~~~~i~~~l~~~~~~~G~~ 140 (404)
T PRK11017 85 GSWLPSLLLGFTQVGWFGV-------GVAMFAIPVVKATG-L--------------DI--NLLIVLSGLLMTVTAYFGIS 140 (404)
T ss_pred HHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHhC-C--------------CH--HHHHHHHHHHHHHHHHHHHH
Confidence 8888877777666666666 65555555555443 0 11 12333444556677788999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q psy6067 193 ESTRLNSVFTFLNLGTVVVIVG 214 (584)
Q Consensus 193 ~~~~~~~~~~~~~l~~ll~~~i 214 (584)
...+++++......+..+...+
T Consensus 141 ~i~~~~~~~~p~~~~~~~~~~~ 162 (404)
T PRK11017 141 ALTILSRIAVPAIALLGGYSVW 162 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887777665554444
No 66
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.53 E-value=0.0007 Score=73.62 Aligned_cols=249 Identities=10% Similarity=-0.045 Sum_probs=126.2
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhh-cC-hHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHH
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQ-AG-PSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLS 108 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~-aG-~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~ 108 (584)
+.+|+.++++.+.+=++..+...-+....... .. -+ ..++++.+++.++........+..+.++-. ..+...|..
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~~ 85 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRAS 85 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhhh
Confidence 34566788888888766665544444443322 11 12 236666666666666655555556555432 466778888
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHH-HHH-HH
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVM-LMS-AL 186 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~-l~~-~i 186 (584)
||..-+.+.....++..+...+. +....++.++..+.... +.+.. .+........+..++.. +.. ..
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av-------~~~~~g~al~~~l~~i~-~~~~~---~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGV-------QAWVGGLCVALMLDSIF-PGYLH---LGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHhc-ccccc---cCCcccHHHHHHHHHHHHHHHHHH
Confidence 99988888888888877777777 77777777766655110 00000 00000111233333322 222 23
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc-CCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHH-hhh
Q psy6067 187 ISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMN-PRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFF-GFV 264 (584)
Q Consensus 187 n~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~-af~ 264 (584)
...|.|...+.+.......++.+++.+. .+.+.+ ..+...... + . -.+.+...++.++....- ...
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~---~------~--~~~~~~~~f~~~~~~~~g~~~s 222 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIW-ALSKAHGKGPLGELTG---T------L--HGSTGAWAFLYALSLVIGSFAT 222 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCCccccCCC---C------C--CcchhHHHHHHHHHHHHHHHHH
Confidence 4556665555555555444444433332 222221 111110000 0 0 001223345554443322 224
Q ss_pred hhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy6067 265 GFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLT 306 (584)
Q Consensus 265 G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~ 306 (584)
+....+.++...|++ |+-.++...+.....+...+......
T Consensus 223 ~~~~~~DysRy~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~a 263 (442)
T TIGR00800 223 WATNAPDFTRFGKSK-KTAIWGQFLALPGGFTLTCFFGILGA 263 (442)
T ss_pred HHcCchhhhhhcCCc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444667777777775 44556666666655555544444443
No 67
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.48 E-value=0.00034 Score=76.95 Aligned_cols=298 Identities=11% Similarity=0.093 Sum_probs=151.3
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHH---HHHHHHHHHHHHHHHHhhhcccCcCCceeehHHH
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISF---IIAALASALSGLCYVEFASRISKSGSAYNYTYLS 108 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~---ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~ 108 (584)
.|+++++-..+..++..++++.+......++. .|.. .+.+. ....+.....+.-+.++.++.. .=...+|.++-
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN-AVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHH
Confidence 68889887777777777777777665544433 3433 22221 1111222223344555565543 33577888888
Q ss_pred hchh-HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHH
Q psy6067 109 IGEF-AAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALI 187 (584)
Q Consensus 109 lG~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in 187 (584)
+|++ ...+.+....+..+...+. +..+.+..++..++ .+.+ ..+.+..++.....-
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~-------ql~~~g~~l~~~~g---------------i~~~-~~iii~~~iv~iYt~ 174 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTA-------QFIGGARLLETATG---------------ISYE-TGLLIFGITVALYTA 174 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhC---------------CCHH-HHHHHHHHHHHHHHH
Confidence 8854 4666666656555556666 77777778887776 1111 122222333445566
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccc-cCCC----cccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHh
Q psy6067 188 SWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKM-NPRN----WAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFG 262 (584)
Q Consensus 188 ~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~a 262 (584)
.-|.|...+...+-..+.++..+++.+..+... +.+. .....+...+ ..+.+++ .++..+........+.
T Consensus 175 ~GGl~av~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~g 249 (483)
T PRK09442 175 FGGFRAVVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVT---PQGADDI--LSPPFMTSFWILVCFG 249 (483)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccC---CCCCCcc--ccHHHHHHHHHHHHHH
Confidence 677887776666655555555444433332221 1100 0000000000 0011111 1111111111111122
Q ss_pred hhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHH---HhhccccccCcCCcHHHHHHHcChhHHHHHHHHH
Q psy6067 263 FVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVL---TLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVG 339 (584)
Q Consensus 263 f~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~---~~~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~ 339 (584)
..+......-.=..||+ |+..|+..++.+...++++...+.- ....|+. .+.+..+.....+..+++..-++.++
T Consensus 250 ~~~~p~~~qR~~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~-~~~~~~~p~l~~~~lp~~l~gl~~a~ 327 (483)
T PRK09442 250 VIGLPHTAVRCMSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDL-TVPDKVIPTLMLKVLPPFAAGIFLAA 327 (483)
T ss_pred HhCCCHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCccchHHHHHHHHcCHHHHHHHHHH
Confidence 22222212222235665 6677888887766666555443321 1112332 12344566666777778888888888
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHhc
Q psy6067 340 SLFALLTAMFGALFPLPRILYAMSLD 365 (584)
Q Consensus 340 ~~~s~~~s~~~~~~~~sR~l~a~A~d 365 (584)
.+.+..++..+.+.+.+-. ++||
T Consensus 328 ~~aA~mST~~s~l~~~ss~---~~~D 350 (483)
T PRK09442 328 PMAAIMSTVDSQLLQSSST---IIKD 350 (483)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHH
Confidence 8888888888877666543 4555
No 68
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.43 E-value=0.00045 Score=75.78 Aligned_cols=301 Identities=10% Similarity=0.069 Sum_probs=153.7
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHH-HHHH---HHHHHHHHHHHHHHHHhhhcccCcCCceeehHHH
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSV-VISF---IIAALASALSGLCYVEFASRISKSGSAYNYTYLS 108 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~-~l~~---ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~ 108 (584)
.|+++++......++..+|++.+.......+. .|... ...+ ..+.++....+.-+.++.++. +.-..++|.++-
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58899998888888888888887765544433 34321 1111 112221222233344444444 233678888888
Q ss_pred hchh-HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHH
Q psy6067 109 IGEF-AAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALI 187 (584)
Q Consensus 109 lG~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in 187 (584)
+|++ .....+....+........ +..+.+..++..++ .+.+ ..+.+..++......
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~-------ql~g~g~~l~~~~g---------------i~~~-~~iii~~~iv~iYt~ 173 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVA-------QFIGGARLIESLTG---------------LSYL-TALFIFSSSVLIYTT 173 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC---------------CCHH-HHHHHHHHHHHHHHH
Confidence 9954 4566666555555555556 67777777777776 1111 122223333455666
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcc-hH-HHHHHH-HHHHHhhh
Q psy6067 188 SWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFG-LN-GIIVGA-AKCFFGFV 264 (584)
Q Consensus 188 ~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~-~~~~~i-~~~~~af~ 264 (584)
.-|.|...+...+-..+.++..+++.+..+...+ ++....+...+... .......+.+ +. .+.... ....+...
T Consensus 174 ~GG~~av~~td~iQ~~v~~~~~~~~~~~~l~~~g--G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 250 (471)
T TIGR02119 174 FGGFRAVALTDAIQGIVMFTGTTILLIAVIKAGG--GVEKIMEKLKDIDP-NLITPFGGDGGLTKPFVASFWILVGIGVI 250 (471)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHhcCc-cccCCCCCCcchhhhHHHHHHHHHHHHHh
Confidence 7788887777776666666555544444433221 11100000000000 0000011111 00 111111 01111222
Q ss_pred hhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhh--ccccccCcCCcHHHHHHHcChhHHHHHHHHHHHH
Q psy6067 265 GFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLI--IPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLF 342 (584)
Q Consensus 265 G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~--~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~~~~ 342 (584)
+......-.-..||+ |+..|+...+.+....++....+.-... ..++..+.+..+.....+..+++..-++..+++.
T Consensus 251 ~~p~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~lla 329 (471)
T TIGR02119 251 GLPQTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMA 329 (471)
T ss_pred CchHHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHH
Confidence 222222234455664 7788888888776666655443332111 1112112345556665666778888888888888
Q ss_pred HHHHHHHHhhchhHHHHHHHHhc
Q psy6067 343 ALLTAMFGALFPLPRILYAMSLD 365 (584)
Q Consensus 343 s~~~s~~~~~~~~sR~l~a~A~d 365 (584)
+..++..+.+...+-. .++|
T Consensus 330 A~mST~~s~l~~~ss~---~~~D 349 (471)
T TIGR02119 330 AIMSTVNSLLLQSSST---IIKD 349 (471)
T ss_pred HHHHHHHHHHHHHHHH---HHHH
Confidence 8888888877766644 4455
No 69
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.34 E-value=0.00056 Score=73.54 Aligned_cols=300 Identities=9% Similarity=0.009 Sum_probs=157.2
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhch-
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGE- 111 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~- 111 (584)
.|+++++-.....++..++++.+......++. .|...++..+...+..++.+..+.+.-++.+ .-..++|.++-+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 47888888888888888888877766555533 3533332222233334445666666655543 34688889999998
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhh
Q psy6067 112 FAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGV 191 (584)
Q Consensus 112 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~ 191 (584)
....+.+....+..+...+. +..+.+..++..++ . + ....+.+..++.......-|.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~-------q~~g~~~il~~~~g-i--------------~-~~~~~ii~~~i~~~Yt~~GG~ 136 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSV-------DLFSGALLIELITG-L--------------D-LYLSLLLLGAITILYTVFGGL 136 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhC-c--------------h-HHHHHHHHHHHHHHHHHHcch
Confidence 46677777777777788888 88888888888776 0 1 112222333334455667788
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhccccc-CCC----cccccCCC---ccccccCCCCCCCCcchHHHHHHHHHHHHhh
Q psy6067 192 SESTRLNSVFTFLNLGTVVVIVGSGLFKMN-PRN----WAIRKEDI---PRTVRHGGTGGFAPFGLNGIIVGAAKCFFGF 263 (584)
Q Consensus 192 r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~-~~~----~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af 263 (584)
|.......+-..+.++..+++.+..+.+.+ .+. ..+..+.. .+..+...........+.-...+.+.....+
T Consensus 137 ~av~~Td~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (407)
T TIGR00813 137 KAVVWTDTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY 216 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHH
Confidence 877776666555555544433333332211 100 00000000 0000000000000011110111111111111
Q ss_pred hhhhh-hhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHH---hhccc---c-c----cCcCCcHHHHHHHcChhH
Q psy6067 264 VGFDC-IATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLT---LIIPY---Y-E----QDAEAPFPHIFDSLGWPV 331 (584)
Q Consensus 264 ~G~e~-~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~---~~~p~---~-~----~~~~~p~~~~~~~~~~~~ 331 (584)
+.+. ..+-.=-.|| +|+..|++..+.+...+.+++..+.-. ...|. + + .+.+..+.....+..+++
T Consensus 217 -~~~~~~~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~ 294 (407)
T TIGR00813 217 -WTNQVIVQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPG 294 (407)
T ss_pred -hcCHHHhhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcc
Confidence 1110 0111123344 367788888887666665544332221 11221 1 1 123445566667777788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHH
Q psy6067 332 MKWLVTVGSLFALLTAMFGALFPLPRIL 359 (584)
Q Consensus 332 ~~~li~~~~~~s~~~s~~~~~~~~sR~l 359 (584)
..-++.++.+.+..++..+.+.+.+-.+
T Consensus 295 l~gl~~agilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 295 LAGLFLAAILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8888888888888888888887766553
No 70
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.20 E-value=0.0026 Score=67.96 Aligned_cols=322 Identities=17% Similarity=0.131 Sum_probs=174.0
Q ss_pred HhhhhhhhhHhHhHHHhHhhhcChH---HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHHHH
Q psy6067 45 GIGATLGVGVYVLAGSVAKNQAGPS---VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNL 121 (584)
Q Consensus 45 ~ig~~iG~gif~~~~~v~~~~aG~~---~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~ 121 (584)
-++.-.|+|-...|.... ..+|.. +.++++++++..=..+..-. -+.||.+.=..+-.||..|.+.....
T Consensus 12 LFamFFGAGNLIFPp~lG-~~aG~~~~~a~~GF~lTgV~lP~Lgvia~------~~~~~~~~~l~~~v~~~f~~if~~~i 84 (427)
T PF05525_consen 12 LFAMFFGAGNLIFPPFLG-QQAGSNWWPAMIGFLLTGVGLPLLGVIAV------AKSGGGIEDLASRVGPKFALIFTILI 84 (427)
T ss_pred HHHHHhCCccccchHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHHH------hhcCCCHHHHhcccCcHHHHHHHHHH
Confidence 455568999888898765 566653 56667777666544443321 12343333344445888887766544
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHH-HhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy6067 122 ELFIEVQAFCIEFSRIREAAALFRLLKQ-LESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSV 200 (584)
Q Consensus 122 ~l~~~~~~a~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~ 200 (584)
.+.-....+. -|.+...-|.... +++ . .......+..+++..+...+.+..-|...++-++
T Consensus 85 ~l~IGP~~ai-----PRtaa~sfe~~i~p~~~----------~---~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~ 146 (427)
T PF05525_consen 85 YLSIGPLFAI-----PRTAAVSFEMGIAPFFP----------E---NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKF 146 (427)
T ss_pred HHHHHhcccC-----cchhhhhHHHhhhccCC----------c---ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHH
Confidence 4332222111 1133333332221 111 0 1123445667778888889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcch-HHHHHHHHHHHHhhhhhhhhhcccccccCc
Q psy6067 201 FTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGL-NGIIVGAAKCFFGFVGFDCIATTGEESKNP 279 (584)
Q Consensus 201 ~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~i~~~~~af~G~e~~~~~~~E~knP 279 (584)
++-..++.++++++.++.+...+.-.+ .+... +..+ .+|+ .|.-.+=..+...|...-..+--....||+
T Consensus 147 LTP~LL~~l~ilii~~i~~p~g~~~~~-~~~y~-------~~~f-~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~ 217 (427)
T PF05525_consen 147 LTPILLILLAILIIKGIFSPIGPPQAP-SGAYA-------SNPF-FKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK 217 (427)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcccc-chhhh-------hhHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999887533221111 10000 0001 1111 111111122233333333333333333443
Q ss_pred CCCchhHH----HHHHHHHHHHHHHHHHHHHhhccc--cccCcCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhc
Q psy6067 280 KRDIPLSI----LLSLFIVFVCYLAIAIVLTLIIPY--YEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALF 353 (584)
Q Consensus 280 ~k~ip~ai----~~~i~i~~viyil~~~~~~~~~p~--~~~~~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~ 353 (584)
|++.|.+ ..+.+...++|....+.-....+. ++.+...-+.++.++..|+.+..++.+...++|+++..+...
T Consensus 218 -k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~ 296 (427)
T PF05525_consen 218 -KEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLIS 296 (427)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 444444455555444432222211 112223456677788888999999999999999999999999
Q ss_pred hhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHH-HHHHHHHHHHhCHHHHHHHHHHHHHHHH
Q psy6067 354 PLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLT-GALTAVLSAVFKLDQLVDMLSIGTLLAY 417 (584)
Q Consensus 354 ~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~-~il~~~~~~~~~~~~l~~~~s~~~l~~y 417 (584)
+.++...+. .| +.+++..... .+++.+ .-...++.+++++.=...+.|
T Consensus 297 a~a~yf~~~-------------~~--kisY~~~v~i~~i~S~~-ian~Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 297 ACAEYFSEL-------------FP--KISYKVWVIIFTIFSFI-IANLGLDQIIKISVPILMFIY 345 (427)
T ss_pred HHHHHHHHH-------------hc--ccChHHHHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHh
Confidence 988876543 32 3444433333 334433 333367777777754444444
No 71
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.04 E-value=0.0049 Score=67.86 Aligned_cols=110 Identities=19% Similarity=0.059 Sum_probs=72.0
Q ss_pred cccccCHHHHHHHHhhhh-hh-hhHhHhHHHhHhhhcChH-HHHHHH---HHHHHHHHHHHHHHHhhhcccCcCCceeeh
Q psy6067 32 LARVLGLTDLTLLGIGAT-LG-VGVYVLAGSVAKNQAGPS-VVISFI---IAALASALSGLCYVEFASRISKSGSAYNYT 105 (584)
Q Consensus 32 l~r~ls~~~~~~l~ig~~-iG-~gif~~~~~v~~~~aG~~-~~l~~l---l~~l~~l~~al~~aEL~s~~P~~GG~y~~~ 105 (584)
-.|+++.+ ..+++.+.. .+ ...+..++. ++. .|.. .+.... ...+.....+--..+++ +-++.=..++|.
T Consensus 36 ~gR~lg~~-v~~ls~~as~~s~~t~lG~~g~-ay~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l 111 (493)
T COG0591 36 GGRSLGPF-VYALSAAASDTSGWTFLGLPGL-AYA-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFL 111 (493)
T ss_pred cCCcCChH-HHHHHHHHHHHHHHHHhcchHH-HHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHH
Confidence 36889988 666654443 44 333334444 423 4544 333333 33344444555566666 444455788999
Q ss_pred HHHhc-hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhc
Q psy6067 106 YLSIG-EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLES 152 (584)
Q Consensus 106 ~~~lG-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~ 152 (584)
++-|| +....+.+....+..+..+++ ...+.+..++..++
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~-------ql~~~~~~~~~~~g 152 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIAL-------QLVAGGLLLSLLFG 152 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhcC
Confidence 99999 888899999999898999999 88888888866665
No 72
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.02 E-value=0.032 Score=59.55 Aligned_cols=246 Identities=15% Similarity=0.054 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q psy6067 69 SVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLK 148 (584)
Q Consensus 69 ~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~ 148 (584)
.++++.+++.++........+..+.++.. ......|..||.+-+.+......+..+...+. +....++.++
T Consensus 30 ~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v-------~~~~gg~~l~ 100 (386)
T TIGR02358 30 RGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAV-------MIIVGAKAAS 100 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 46777777776666655566666555432 46677888899988888888888888888888 8888888888
Q ss_pred HHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccc
Q psy6067 149 QLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIR 228 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~ 228 (584)
...+ ...+ . .. ......++..+.......|.|..++++++...+..+..+...+....+.+.+..
T Consensus 101 ~~~~-~~~~-----~----~~--~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--- 165 (386)
T TIGR02358 101 LLGG-RLFG-----E----ES--PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSEL--- 165 (386)
T ss_pred HHHH-HhcC-----C----Cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh---
Confidence 7775 1000 0 01 112223334456677789999999999998888777766655544433221110
Q ss_pred cCCCccccccCCCCCCCCcchHHHHHHHHHHHHh-hhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q psy6067 229 KEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFG-FVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTL 307 (584)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~a-f~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~ 307 (584)
. + .++ +.++ ..++....-. ..+....+.++...|+| |+.-++...+..+...+..+.......
T Consensus 166 ~----~-----~~~---~~s~---~~~~~~~~~~~~swa~~~~DysRy~k~~-~~~~~~~~~G~~i~~~~~~~~G~~~~~ 229 (386)
T TIGR02358 166 W----N-----RAG---DMSF---AVAVELVIAMPLSWLPLIADYTRFARNP-RHVFLGTVLGYFIGSCWMYFLGLAVTL 229 (386)
T ss_pred c----C-----CCC---CccH---HHHHHHHHHHHHHHHHHccchhhhcCCC-cceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 000 1112 2222111111 11222366777777776 445577777777766666665555544
Q ss_pred hccccccCcCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy6067 308 IIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMS 363 (584)
Q Consensus 308 ~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A 363 (584)
..+.+ +|. +.....+.. ....+..+++..++.....+.++--+..+.
T Consensus 230 a~~~~-----d~~-~~~~~~g~~---~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~ 276 (386)
T TIGR02358 230 ATGQT-----DII-SILAGAGLG---IPALLIILLSTVTTTFMDIYSAAISTGNLL 276 (386)
T ss_pred hcCCC-----CHH-HHHHhccHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 43322 333 333333322 233344455666655555555544444443
No 73
>PRK12488 acetate permease; Provisional
Probab=97.98 E-value=0.019 Score=64.28 Aligned_cols=158 Identities=9% Similarity=-0.016 Sum_probs=91.3
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHH-HHHHHHHhhhcccCcCCceeehHHHhc-
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASAL-SGLCYVEFASRISKSGSAYNYTYLSIG- 110 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~-~al~~aEL~s~~P~~GG~y~~~~~~lG- 110 (584)
.|+++++...+...+..+++..|.......+. .|...++ +.++..+..+ ..+.+++--.+... --.++|.++-+|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 58999998888888888888877765544433 4543222 2233333322 23334443333322 245666677777
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 111 EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 111 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
+....+++....+..+..... ...+.+..++.+++ . +.+..++ +..++.....-.-|
T Consensus 143 ~~~r~laai~~i~~~~~yl~~-------q~~g~g~il~~l~g-i--------------~~~~~ii-i~~~i~~~Yt~~GG 199 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVA-------QMVGAGKLIELLFG-I--------------SYLYAVV-IVGALMVLYVTFGG 199 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhC-C--------------CHHHHHH-HHHHHHHHHHhccc
Confidence 557778877777776777777 78888777777776 1 1111222 22223334455678
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVIVGSG 216 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~~i~~ 216 (584)
.|...+.+.+=.++.++..++..+..
T Consensus 200 m~av~~td~iQ~~im~~~~i~~~~~~ 225 (549)
T PRK12488 200 MLATTWVQIIKAVLLLSGTSFMAFMV 225 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766666655555544443333
No 74
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.97 E-value=0.00017 Score=77.43 Aligned_cols=301 Identities=17% Similarity=0.128 Sum_probs=136.1
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchh
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEF 112 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~ 112 (584)
.|+++++-..+..++..+|++.+.......+. .|....+..+...+...+.++.++.--.+. +.-...+|.++-+|++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCc
Confidence 57899887777777878888777665544433 454322222222333333344434333332 2336788999999988
Q ss_pred H--HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 113 A--AYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 113 ~--g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
. ..+......+..+...+. +..+.+..++..++ -.....+.+..+++......-|
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~-------q~~~~~~~~~~~~g----------------i~~~~~~~i~~~i~~iYt~~GG 139 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAA-------QLVGGGALLSVLFG----------------IPYNTAILIVGVIVIIYTFFGG 139 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHH-------HHHHHHHHHHHHTT------------------HHHHHHHHHHHHHHTTCTT-
T ss_pred hhhhhhcccccchhhhhhhhc-------cccccccchhhccc----------------hhhhHHHHHHHHHHHHhhhhhh
Confidence 7 566655556666666677 88888888887776 1111222223333444556667
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhccccc-C----CCcccccCCCccccccCCCCCC-CCcchHHHHHHHHHHHHhhh
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVIVGSGLFKMN-P----RNWAIRKEDIPRTVRHGGTGGF-APFGLNGIIVGAAKCFFGFV 264 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~i~~~~~af~ 264 (584)
.|...+...+-..+.++..+++.+..+...+ . +++....++..+...+.+.+.. .+.....+. ....+...
T Consensus 140 l~av~~td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~ 216 (406)
T PF00474_consen 140 LRAVAWTDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFW---IALMLGTF 216 (406)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-T---THHHHSTH
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHH---HHHHhhhc
Confidence 7766665555555554444443333332211 0 0000000000000000000000 010000000 01111111
Q ss_pred hhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHH------HHHHhhcccc----ccCcCCcHHHHHHHcChhHHHH
Q psy6067 265 GFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIA------IVLTLIIPYY----EQDAEAPFPHIFDSLGWPVMKW 334 (584)
Q Consensus 265 G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~------~~~~~~~p~~----~~~~~~p~~~~~~~~~~~~~~~ 334 (584)
+......-.--.||+ |+..|++..+.....+++.... .......|+. ..+.+..+.....+..+++..-
T Consensus 217 ~~p~~~qR~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 295 (406)
T PF00474_consen 217 GAPHFWQRFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAG 295 (406)
T ss_dssp HH-HHHHHHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHH
T ss_pred cchHHHHHHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHH
Confidence 111111111223443 6677887777654444444321 1122222211 1122335566667777788888
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhc
Q psy6067 335 LVTVGSLFALLTAMFGALFPLPRILYAMSLD 365 (584)
Q Consensus 335 li~~~~~~s~~~s~~~~~~~~sR~l~a~A~d 365 (584)
++.++.+.+..++..+.+.+.+-. ++||
T Consensus 296 l~~~~~~aA~~ST~~s~l~a~ss~---~~~D 323 (406)
T PF00474_consen 296 LFLAGILAAIMSTADSLLLAISSI---FSRD 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhhhh---hhHH
Confidence 888888888888888888776654 4566
No 75
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.96 E-value=0.027 Score=63.05 Aligned_cols=154 Identities=8% Similarity=0.019 Sum_probs=83.5
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHH-HHHHHHHHhhhcccCcCCceeehHHHhc-
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASA-LSGLCYVEFASRISKSGSAYNYTYLSIG- 110 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l-~~al~~aEL~s~~P~~GG~y~~~~~~lG- 110 (584)
.|+++++.......+..+++..|.......+. .|...++. .++..+.. +..+.++|--.+... --..+|.++-+|
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~-~~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIY-SLGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcCC
Confidence 68898887655566666776666655443433 45432221 12333333 233444554444322 134455556675
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 111 EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 111 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
|....+.+....+..+..... ...+.+..++.+++ . + +...+.+..++.....-.-|
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~-------ql~g~g~il~~~~g-i--------------~-~~~~iii~~~i~~~Yt~~GG 199 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIA-------QMVGAGKLIELLFG-L--------------N-YHVAVVLVGILMVMYVLFGG 199 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC-C--------------C-HHHHHHHHHHHHHHHHHhhh
Confidence 556667666666655666666 77777777777776 1 1 11122223333444555678
Q ss_pred hhhhHHHHHHHHHHHHHHHHHh
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVI 212 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~ 212 (584)
.|...+.+.+=.++.++..+++
T Consensus 200 m~av~~td~iQ~~im~~g~i~~ 221 (549)
T TIGR02711 200 MLATTWVQIIKAVLLLFGATFM 221 (549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 8877776666665555544443
No 76
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.96 E-value=0.04 Score=59.72 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=49.2
Q ss_pred hhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccC-cC-CceeehHHHhchhHHHHHHHHHHHHHHH
Q psy6067 50 LGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISK-SG-SAYNYTYLSIGEFAAYIIGWNLELFIEV 127 (584)
Q Consensus 50 iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~-~G-G~y~~~~~~lG~~~g~~~g~~~~l~~~~ 127 (584)
+|.|-...... +.+.-|-..+|..+++ .+....+-|++.|+-. +| |...-.++-+|+.++++......++...
T Consensus 48 idpG~i~t~~~-aGA~~Gy~LLW~llls----~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~ 122 (439)
T PRK00701 48 MDPGNWATNIQ-GGSQFGYTLLWVILLS----NLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMA 122 (439)
T ss_pred ecchHHHHHHH-HHHHHCHHHHHHHHHH----HHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHH
Confidence 45554433322 2233344444444444 3455566777777654 44 6667777888888877665555555555
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHhc
Q psy6067 128 QAFCIEFSRIREAAALFRLLKQLES 152 (584)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~l~~~~~ 152 (584)
.... +..+.+--++.+++
T Consensus 123 ~~~~-------e~~G~a~al~ll~g 140 (439)
T PRK00701 123 TDLA-------EVIGAAIALKLLFG 140 (439)
T ss_pred HHHH-------HHHHHHHHHHHHhC
Confidence 5444 55555544444444
No 77
>PRK09395 actP acetate permease; Provisional
Probab=97.90 E-value=0.043 Score=61.42 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=84.8
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHH-HHHHHHHhhhcccCcC--CceeehHHHh
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASAL-SGLCYVEFASRISKSG--SAYNYTYLSI 109 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~-~al~~aEL~s~~P~~G--G~y~~~~~~l 109 (584)
.|+++++...+..++..+++..|.......+ ..|...++ +.++..+..+ ..+.++ .++-+.| ..++|.++-+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y-~~G~~~~~-~~~~~~~g~~~~~~~~~---~~~r~~g~~T~~d~l~~Ry 142 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVF-TSGYDGLI-YSIGFLVGWPIILFLIA---ERLRNLGKYTFADVASYRL 142 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHH-HhCHHHHH-HHHHHHHHHHHHHHHHH---HHHhhCCCccHHHHHHHHc
Confidence 5889988777767777788777766554443 34543322 2233323222 233333 3332222 3445566778
Q ss_pred c-hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 110 G-EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 110 G-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
| +....+.+....+..+..... ...+.+..++..++ . + ....+.+..++.......
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~-------q~~g~g~il~~~~g-i--------------~-~~~~ili~~~i~~iYt~~ 199 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIA-------QMVGAGKLIQLLFG-L--------------N-YHVAVVLVGVLMMVYVLF 199 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhC-C--------------C-HHHHHHHHHHHHHHHHhh
Confidence 8 457778777777666666667 77777777777766 1 1 112222333344455666
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVI 212 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~ 212 (584)
-|.|...+.+.+=.++.++..+++
T Consensus 200 GGm~av~~TD~iQ~iim~~g~ii~ 223 (551)
T PRK09395 200 GGMLATTWVQIIKAVLLLSGATFM 223 (551)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 788876666665555554444333
No 78
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.88 E-value=0.0078 Score=63.54 Aligned_cols=260 Identities=15% Similarity=0.144 Sum_probs=123.2
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhhhcccC--cCCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Q psy6067 66 AGPSVVISFIIAALASALSGLCYVEFASRISK--SGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAAL 143 (584)
Q Consensus 66 aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~--~GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~ 143 (584)
-|...++..+++ .+..+.+-|++.|+-. .-+...-.++-+||.++........+........ +..+.
T Consensus 11 ~Gy~Llw~lll~----~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~-------~~~g~ 79 (358)
T PF01566_consen 11 YGYSLLWVLLLS----NLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAA-------EIIGI 79 (358)
T ss_pred HCHHHHHHHHHH----HHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 344444444444 4455566666666653 3355666678889998888887777776666666 65555
Q ss_pred HHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCC
Q psy6067 144 FRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPR 223 (584)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~ 223 (584)
+.-++.+++ .+. .....+..+....+-....+..+++++++..+..+..+.+++..+.. ++
T Consensus 80 a~al~ll~g---------------~~~--~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~-~p- 140 (358)
T PF01566_consen 80 AIALNLLFG---------------IPL--WIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIV-HP- 140 (358)
T ss_pred HHHHHhhcC---------------CCc--HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhc-ch-
Confidence 555554443 011 22222222222223222234455555555555544434333333322 11
Q ss_pred CcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhc---ccccccCcCC---C--ch---hHHHHHHH
Q psy6067 224 NWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIAT---TGEESKNPKR---D--IP---LSILLSLF 292 (584)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~---~~~E~knP~k---~--ip---~ai~~~i~ 292 (584)
++....+... . +-.|. ..++...+...-+....++...+ ..|+-.+++| + .+ +=...++.
T Consensus 141 ~~~~~~~g~~----~----P~~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~ 211 (358)
T PF01566_consen 141 DWGEVARGLV----V----PSIPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMI 211 (358)
T ss_pred hHHHHhhhcc----C----CCCcc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHH
Confidence 1211111100 0 00111 11222222222222222222111 1122211101 1 11 11222332
Q ss_pred HHHHHHHHHHHHHHhhcc-c-cccCcCCcHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHh
Q psy6067 293 IVFVCYLAIAIVLTLIIP-Y-YEQDAEAPFPHIFDSLGW-PVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSL 364 (584)
Q Consensus 293 i~~viyil~~~~~~~~~p-~-~~~~~~~p~~~~~~~~~~-~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~ 364 (584)
+..++-..+..+...... . .+..+.....+.++...| ++...++.++.+.+.+++......+.++.+.+.-+
T Consensus 212 ~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~ 286 (358)
T PF01566_consen 212 VSFLINVAILIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLG 286 (358)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhc
Confidence 222222222222222222 1 122333456667777767 79999999999999999999999998888776654
No 79
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.86 E-value=0.032 Score=61.52 Aligned_cols=296 Identities=13% Similarity=0.052 Sum_probs=134.9
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHH-HHHHHHHHHHhhhccc----CcCCceeehHH
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALA-SALSGLCYVEFASRIS----KSGSAYNYTYL 107 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~-~l~~al~~aEL~s~~P----~~GG~y~~~~~ 107 (584)
.|+++++-..+...+..+++..+.......+. .|....+.. ++..+ .++..+.+++--.++. ..-..++|.++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 58898887665555555665555543322323 354322211 22222 2223333443333221 12246788888
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHH
Q psy6067 108 SIGE---FAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMS 184 (584)
Q Consensus 108 ~lG~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~ 184 (584)
-+|+ ....+.+....+......+. ...+.+..++..++ .+.. ..+.+..++...
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~-------~l~~~~~~l~~~~g---------------i~~~-~~iii~~~i~~~ 169 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSS-------GLVAGGKLFESTFG---------------LDYK-TGLLIGALIIVI 169 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhC---------------ccHH-HHHHHHHHHHHH
Confidence 8884 45555555555555555666 66777777777665 0111 122233334555
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhh
Q psy6067 185 ALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFV 264 (584)
Q Consensus 185 ~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~ 264 (584)
....-|.|...+...+=.++.++..+++.+..+.+.+ ++....+...+. ++.....+.+..+.++...+... +.+.
T Consensus 170 Yt~~GGl~av~~TD~iQ~~i~~~~~~~v~~~~~~~~G--G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 245 (487)
T TIGR02121 170 YTFFGGFLAVSWTDFVQGLLMFFALVLVPIVALFNLG--GFGETLSAVAAI-NPHLLDMFKGASVIAIISLLAWG-LGYF 245 (487)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHhh-CccccCCCCCCCHHHHHHHHHHH-HHhc
Confidence 6677778877666655555555444433333332211 111000000000 00000001111222233222111 1111
Q ss_pred hhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHH---HHhhcccc-cc---CcCCcHHHHHHHcChhHHHHHHH
Q psy6067 265 GFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIV---LTLIIPYY-EQ---DAEAPFPHIFDSLGWPVMKWLVT 337 (584)
Q Consensus 265 G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~---~~~~~p~~-~~---~~~~p~~~~~~~~~~~~~~~li~ 337 (584)
|......-.=-.||+ |+..|+...+.....+.++...+. -....+.. +. +.+..+.....+..+++..-++.
T Consensus 246 ~~p~~~qR~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~ 324 (487)
T TIGR02121 246 GQPHIIVRFMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILL 324 (487)
T ss_pred cchHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHH
Confidence 211111111123443 566777766654332222211111 11111211 11 22344555566667788877888
Q ss_pred HHHHHHHHHHHHHhhchhHHH
Q psy6067 338 VGSLFALLTAMFGALFPLPRI 358 (584)
Q Consensus 338 ~~~~~s~~~s~~~~~~~~sR~ 358 (584)
.+.+.+..++..+.+.+.+-.
T Consensus 325 a~ilaA~mST~~s~l~s~ss~ 345 (487)
T TIGR02121 325 AAILAAIMSTISSQLLVSSSA 345 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777654
No 80
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.065 Score=57.23 Aligned_cols=110 Identities=19% Similarity=0.102 Sum_probs=57.0
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccC-cC-CceeehHHH
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISK-SG-SAYNYTYLS 108 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~-~G-G~y~~~~~~ 108 (584)
+.+|.++...--.+..-+-++.|-+.... ++|...-..++-.-++..+.++..-|++.|+-. +| |.-.-.++.
T Consensus 12 ~~~~~l~~lGPg~lva~a~iDpg~~at~~-----~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~ 86 (416)
T COG1914 12 TLRKLLALLGPGFLVAVAYVDPGNIATSA-----QAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRER 86 (416)
T ss_pred HHHHHHHhhCcHHHHHHhccCchhHHhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 44455555554444333334555443332 233322223333444555566666777776644 33 345556666
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhc
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLES 152 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~ 152 (584)
++|+++++......++.....-+ +..+.+-.++.+++
T Consensus 87 y~~~~~~~~~~~~~i~~~at~ia-------e~~G~aial~ll~~ 123 (416)
T COG1914 87 YLPGLGILLWILAEIAGIATDIA-------EVAGIAIALNLLFG 123 (416)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcC
Confidence 78877776665555555544444 56666555555554
No 81
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.84 E-value=0.085 Score=58.39 Aligned_cols=155 Identities=14% Similarity=0.026 Sum_probs=82.7
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHH-HHHHHH-Hh---hhcccCcCCceeehHH
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASAL-SGLCYV-EF---ASRISKSGSAYNYTYL 107 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~-~al~~a-EL---~s~~P~~GG~y~~~~~ 107 (584)
.|+++++-..+...+..+++..+......++ ..|....+. .++..+... ....+. .+ ..+.+..--.++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y-~~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVF-LSGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHH-HcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 6889988887777777777777765544343 345443221 222222211 111111 11 1111222356778888
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHH
Q psy6067 108 SIGE---FAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMS 184 (584)
Q Consensus 108 ~lG~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~ 184 (584)
-+|+ ....+.+....+......+. ...+.+..++..++ . + ....+.+..++...
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~-------ql~~~~~~l~~~~g-i--------------~-~~~~iii~~~iv~i 173 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCAS-------GIVAGARLFESTFG-M--------------S-YETALWAGAAATIL 173 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhC-C--------------C-HHHHHHHHHHHHHH
Confidence 8884 45555666555555666666 66667777777665 0 1 11222233334555
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHh
Q psy6067 185 ALISWGVSESTRLNSVFTFLNLGTVVVI 212 (584)
Q Consensus 185 ~in~~G~r~~~~~~~~~~~~~l~~ll~~ 212 (584)
....-|.|...+...+=.++.++..+++
T Consensus 174 Yt~~GGl~aV~~TD~iQ~~imi~g~i~~ 201 (502)
T PRK15419 174 YTFIGGFLAVSWTDTVQASLMIFALILT 201 (502)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778877766665555554444433
No 82
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.83 E-value=0.044 Score=58.17 Aligned_cols=289 Identities=16% Similarity=0.138 Sum_probs=145.9
Q ss_pred HHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhh--hcccCcCCceeehHHHhchhHHHH
Q psy6067 39 TDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFA--SRISKSGSAYNYTYLSIGEFAAYI 116 (584)
Q Consensus 39 ~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~--s~~P~~GG~y~~~~~~lG~~~g~~ 116 (584)
...+.-++|+.+|-|-..+.+..+.+++|...++-+++..+. +-.-+...|.+ ++... +..-.| ++..+++..-.
T Consensus 12 lGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~-~GiPlli~Ef~iGr~~~~-~~~~a~-~~l~~~~~~~~ 88 (439)
T COG0733 12 LGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLL-VGIPLLLAEFAIGRRGRK-NAVGAF-RKLAPKKKWEW 88 (439)
T ss_pred HHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHH-HhHHHHHHHHHhhhhcCC-ChhHHH-HHhccCccchh
Confidence 344444889999999999988888777776544444443332 22233344443 22221 111111 12222233333
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhc----CCC--C---CccccccCCCCCCchhhHHHHHHHHHHHHHH
Q psy6067 117 IGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLES----GGG--E---TSTLTTDRYSFLSTYPDFIAAGIVMLMSALI 187 (584)
Q Consensus 117 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~----~~~--~---~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in 187 (584)
.||.-.+......+. |....+-.+.+.+. ..+ . .+.+..... ++......-.++.++...+-
T Consensus 89 ~G~~gv~~~~~i~sf-------YsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~--~~~~~~~~~~~~~~lt~~iv 159 (439)
T COG0733 89 IGWFGVLGGFLILSF-------YSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTIS--NPGLAVIFHLLFLVLTALIV 159 (439)
T ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHH
Confidence 444433333333333 33333332222222 111 0 000110000 12222334466777788889
Q ss_pred Hhhhhh-hHHHHHHHHHHHHHHHHHhhhhhcccccC-C----CcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHH
Q psy6067 188 SWGVSE-STRLNSVFTFLNLGTVVVIVGSGLFKMNP-R----NWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFF 261 (584)
Q Consensus 188 ~~G~r~-~~~~~~~~~~~~l~~ll~~~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~ 261 (584)
.+|++. ..|.++++.-...+.++++.+-.+...+. + .+.++.. ... ++..+..++-.++|
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s------------~l~--~~~v~~~AlGQ~FF 225 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFS------------KLT--DPKVWLAALGQAFF 225 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHH------------HcC--chhhHHHHHHHHHH
Confidence 999997 89999998888877777766665543210 0 1111110 011 13456777788888
Q ss_pred hh-hhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcccccc-CcCC------cHHHHHHHcC-hhHH
Q psy6067 262 GF-VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQ-DAEA------PFPHIFDSLG-WPVM 332 (584)
Q Consensus 262 af-~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~-~~~~------p~~~~~~~~~-~~~~ 332 (584)
+. .|+..--.++...++ +.|+++.-....+.-..+-++.-+.+....-.-.. .++. .+..++++++ +...
T Consensus 226 sLSlG~g~mitYsSYL~k-~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~ 304 (439)
T COG0733 226 SLSLGFGIMITYSSYLSK-KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLF 304 (439)
T ss_pred HHHHHHHHHHHHHhhcCc-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHH
Confidence 76 588888888888776 67788766666555555444444433322211111 1111 3566677775 3334
Q ss_pred HHHHHHHHHHHHHHHHHHhhch
Q psy6067 333 KWLVTVGSLFALLTAMFGALFP 354 (584)
Q Consensus 333 ~~li~~~~~~s~~~s~~~~~~~ 354 (584)
..++.....++.++|..+.+-.
T Consensus 305 ~~lFFl~l~fAalTS~iSmlE~ 326 (439)
T COG0733 305 GILFFLLLLFAALTSAISMLEV 326 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566655555533
No 83
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.77 E-value=0.016 Score=61.92 Aligned_cols=280 Identities=14% Similarity=0.076 Sum_probs=148.7
Q ss_pred HhhhhhhhhHhHhHHHhHhhhcChH---HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHHHHHH
Q psy6067 45 GIGATLGVGVYVLAGSVAKNQAGPS---VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYIIGWNL 121 (584)
Q Consensus 45 ~ig~~iG~gif~~~~~v~~~~aG~~---~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~ 121 (584)
-++.-.|+|-...|.... ..+|.. +.++++++++..=+.+..-.-. ..|+.....+| .||..|.+.....
T Consensus 17 LFamFFGAGNLIFPp~LG-~~aG~~~~~a~~GF~iT~VglPlLgiiava~-----~~g~~~~l~~r-v~~~f~~~f~~~i 89 (439)
T PRK15433 17 TFALFVGAGNIIFPPMVG-LQAGEHVWTAAFGFLITAVGLPVLTVVALAK-----VGGGVDSLSTP-IGKVAGVLLATVC 89 (439)
T ss_pred HHHHHhcCcchhccHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCHHHHhhh-cchHHHHHHHHHH
Confidence 455558999999998765 566753 5666777666544433322111 12455554444 4888877665544
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy6067 122 ELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVF 201 (584)
Q Consensus 122 ~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~ 201 (584)
.+.--...+. -|.+...-|. +.. |.-.++ .....+..+++..+...+.+..-|...++-+++
T Consensus 90 ~l~IGP~~ai-----PRtaavsfEm--------~i~----p~~~~~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~L 151 (439)
T PRK15433 90 YLAVGPLFAT-----PRTATVSFEV--------GIA----PLTGDS-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFL 151 (439)
T ss_pred HHHHhhcccc-----CCccccchhh--------eee----ccCCcc-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHH
Confidence 4332222111 1122222111 011 111111 123346677777888889999999999999999
Q ss_pred HHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcch-HH--HHHHHHHHHHhhhhhhhhhcccccccC
Q psy6067 202 TFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGL-NG--IIVGAAKCFFGFVGFDCIATTGEESKN 278 (584)
Q Consensus 202 ~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~--~~~~i~~~~~af~G~e~~~~~~~E~kn 278 (584)
+-..++.++++++.++.+...+ ...+.+... +..+ .+|+ .| .+-++....|+ ..-..+--....||
T Consensus 152 TP~LL~~l~~lii~~i~~p~g~-~~~~~~~y~-------~~~f-~~Gf~eGY~TMDalaal~Fg--~iii~~i~~~G~~~ 220 (439)
T PRK15433 152 APLKIIALVILSVAAIVWPAGS-ISTATEAYQ-------NAAF-SNGFVNGYLTMDTLGAMVFG--IVIVNAARSRGVTE 220 (439)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-CCCcchhhh-------hhhH-HHHHHhhHHHHHHHHHHHHH--HHHHHHHHHcCCCC
Confidence 9999999999998888753211 111101000 0001 1111 11 22222222332 22222223334555
Q ss_pred cCCCchh----HHHHHHHHHHHHHHHHHHHHHhhcc-ccccCcC-CcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhh
Q psy6067 279 PKRDIPL----SILLSLFIVFVCYLAIAIVLTLIIP-YYEQDAE-APFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGAL 352 (584)
Q Consensus 279 P~k~ip~----ai~~~i~i~~viyil~~~~~~~~~p-~~~~~~~-~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~ 352 (584)
+ |.+.| +-.++.+...++|....+.-....+ .++..+. .-.........++++..++.+...++++++..+..
T Consensus 221 ~-~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi 299 (439)
T PRK15433 221 A-RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLT 299 (439)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 33334 4444444445555555443322212 1111111 22333445566788999999999999999999999
Q ss_pred chhHHHHHH
Q psy6067 353 FPLPRILYA 361 (584)
Q Consensus 353 ~~~sR~l~a 361 (584)
.+.++.+..
T Consensus 300 ~a~a~~f~~ 308 (439)
T PRK15433 300 CACAEFFAQ 308 (439)
T ss_pred HHHHHHHHh
Confidence 988887553
No 84
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.71 E-value=0.041 Score=60.09 Aligned_cols=363 Identities=13% Similarity=0.023 Sum_probs=165.1
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHH--HhHhh-------hcCh--------------HHHHHHHHHHHHHHHHHHHHH
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAG--SVAKN-------QAGP--------------SVVISFIIAALASALSGLCYV 89 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~--~v~~~-------~aG~--------------~~~l~~ll~~l~~l~~al~~a 89 (584)
|.++|.++-++|.+++-+|+|+..... .+... .++. ..+.+|.+-++..+..++.+.
T Consensus 72 kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y 151 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFY 151 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeee
Confidence 457888888999888888888765531 11100 0110 013455556666666666655
Q ss_pred HhhhcccCcCCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCC
Q psy6067 90 EFASRISKSGSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLS 169 (584)
Q Consensus 90 EL~s~~P~~GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (584)
.-...+..+...+.-..+...+..|-+.=....++.+...+. +.+-.+.....-++..++ . +...
T Consensus 152 ~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~Gvat---slGlg~~qi~~gl~~~~G-i-----------~~~~ 216 (485)
T PF02028_consen 152 NKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVAT---SLGLGVPQISAGLSSLFG-I-----------PNTF 216 (485)
T ss_dssp TS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCT-S-----------SSTH
T ss_pred ecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHcC-C-----------CCch
Confidence 533222223333333332222344444444444444443333 111134444444555554 1 1112
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHhhhhhccccc--------CCCcccccCCCccccccCC
Q psy6067 170 TYPDFIAAGIVMLMSALISWGVSE-STRLNSVFTFLNLGTVVVIVGSGLFKMN--------PRNWAIRKEDIPRTVRHGG 240 (584)
Q Consensus 170 ~~~~ii~~~~l~l~~~in~~G~r~-~~~~~~~~~~~~l~~ll~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 240 (584)
..+.++.+++.++.+.-...|+|. .+++.++-..+.+..++.+.+.|-...- ..+.++..+... .
T Consensus 217 ~~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~------~ 290 (485)
T PF02028_consen 217 GLQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSL------W 290 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------c
Confidence 223344455555666666767654 5555555555555555555554433110 000011000000 0
Q ss_pred CCCCCCcc-hHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCc---
Q psy6067 241 TGGFAPFG-LNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDA--- 316 (584)
Q Consensus 241 ~~~~~~~g-~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~--- 316 (584)
.++....+ |.+-..-+..+.|.--+--....++.=.| -|+++--++..++...+.-.+....+++..=+.+.++
T Consensus 291 t~~~~~~~~w~~~WTvFYwaWWiawaPfvG~FiArISk--GRTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~ 368 (485)
T PF02028_consen 291 TDPFGNSGQWPQDWTVFYWAWWIAWAPFVGLFIARISK--GRTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGD 368 (485)
T ss_dssp -TTTTTTTHHHHHTHHHHHHHHHHTHHHHHHHHHHCTT--TSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-
T ss_pred cccccCcccccCCCHHHHHHHHHHHHHHHHHHHhhhcC--CcCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhh
Confidence 01111122 44444444444443333333444455555 3777554544444444433333333322211111111
Q ss_pred ------CCc---HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHH
Q psy6067 317 ------EAP---FPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSL 387 (584)
Q Consensus 317 ------~~p---~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Ail 387 (584)
+++ ....++++ | +..++....++..+....+..-+++..+-.++.+| +.+| ..+.+..|
T Consensus 369 ~~~~~~~g~~~a~~~~l~~l--P-~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep--~~~~ri~W 436 (485)
T PF02028_consen 369 LAAANEQGPEAALFAFLEQL--P-LSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEP--PRWLRIFW 436 (485)
T ss_dssp HHHHHHH-HHHHHHHHHHTS--T-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHH
T ss_pred HHHHhhcchhhHHHHHHHHh--h-HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCC--chHHHHHH
Confidence 112 22223333 2 33455555555556666666677777778888776 1221 22223332
Q ss_pred --HHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6067 388 --LTGALTAVLSAVFK---LDQLVDMLSIGTLLAYTIVALSVLILRYS 430 (584)
Q Consensus 388 --l~~il~~~~~~~~~---~~~l~~~~s~~~l~~y~l~~la~i~~r~~ 430 (584)
+.++++..+...+. .+.+..+.++...+..++.+.+.++.-|+
T Consensus 437 ~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 437 GLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23444444555555 45566667777788888888887776654
No 85
>PRK10484 putative transporter; Provisional
Probab=97.67 E-value=0.16 Score=56.58 Aligned_cols=306 Identities=13% Similarity=0.031 Sum_probs=135.5
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHH-HHHHHHHHHHHHHHhhhcccCcCCceeehHHHhch
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFII-AALASALSGLCYVEFASRISKSGSAYNYTYLSIGE 111 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll-~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~ 111 (584)
.|+++++-..+...+..+++..|......++. .|.... .|.. ..+...+.++.++.--.+.. .=..++|.++-+|+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~-~~~~~~~~~~~~~~~~~~p~~~r~~-~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVM-AWEVTAAIALIILALIFLPRYLKSG-ITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHhcCc
Confidence 68999988777777777777777655444433 454432 1222 22223334444433322321 22567788888888
Q ss_pred hHHHHHHHHHHHHHHHH-hhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHH--HHHHHHHHHHH
Q psy6067 112 FAAYIIGWNLELFIEVQ-AFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAA--GIVMLMSALIS 188 (584)
Q Consensus 112 ~~g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~--~~l~l~~~in~ 188 (584)
+.....+....+.+... .+. .....+..++..+. .. . ..+.+ ......+.+ +.++.......
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~-------~l~~g~~~l~~i~~-~~--~-~~gi~----~~~~~~~~~~~~~~i~~~Yt~~ 178 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPI-------VLYSGALALNSLFH-VS--E-LLGIS----YGAAIWLLVWLIGIIGAIYAVF 178 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc-ch--h-hcCCc----HHHHHHHHHHHHHHHHhhhhhh
Confidence 76555555544444332 222 22233333333332 00 0 00000 111111111 11233445566
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCC----CcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPR----NWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFV 264 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~ 264 (584)
-|.|...+...+=.++.++..+++.+..+...+.+ .++...+..++..+..+ +...+..+...+.+.......+.
T Consensus 179 GGl~aV~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 257 (523)
T PRK10484 179 GGLKAVAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIG-GATDPVPFPTLFTGLILVNLFYW 257 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccC-CCCCCCcHHHHHHHHHHHHHHHH
Confidence 77887666655555554444333322222211110 11100000000110000 00011223333333322212222
Q ss_pred hhh-hhhcccccccCcCCCchhHHHHHHHHHHHHHHHHH---HHHHhhccccccCcCCcHHHHHHHcChhHHHHHHHHHH
Q psy6067 265 GFD-CIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIA---IVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGS 340 (584)
Q Consensus 265 G~e-~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~---~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~~ 340 (584)
+.+ ...+-.=-.||+ |+..|+...+.....+++.... +......|++..+.+..+.....+..+++..-++.++.
T Consensus 258 ~~~q~~~qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~i 336 (523)
T PRK10484 258 CTNQSIVQRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVL 336 (523)
T ss_pred hCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHH
Confidence 211 111112223443 5667777776554444333322 12222234322233455666666777787777777777
Q ss_pred HHHHHHHHHHhhchhHHH
Q psy6067 341 LFALLTAMFGALFPLPRI 358 (584)
Q Consensus 341 ~~s~~~s~~~~~~~~sR~ 358 (584)
+.+..++..+.+.+.+-.
T Consensus 337 lAA~mST~~s~l~s~st~ 354 (523)
T PRK10484 337 FGAILSTFNGFLNSASTL 354 (523)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887777766554
No 86
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.66 E-value=0.11 Score=54.56 Aligned_cols=285 Identities=13% Similarity=0.072 Sum_probs=152.1
Q ss_pred HHHHHhhhhhhhhHhHhHHHhHhhhcChH---HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhHHHHH
Q psy6067 41 LTLLGIGATLGVGVYVLAGSVAKNQAGPS---VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFAAYII 117 (584)
Q Consensus 41 ~~~l~ig~~iG~gif~~~~~v~~~~aG~~---~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~g~~~ 117 (584)
.=++.++.-.|+|-...|.... ..+|.. +.++++++++..=.....-. -..||.+.=..+-.||..|.+.
T Consensus 10 ~GfmLFalFFGAGNlIFPP~LG-~~aG~~~~~A~lGFllTgVglPlLgiIa~------a~~g~~~~~l~~~i~~~fg~~f 82 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPMLG-LHAGEHVWPAILGFLLTGVGLPLLGIIAV------ALYGGGVESLATRIGPWFGVLF 82 (431)
T ss_pred HHHHHHHHHhcCCCccCChhhh-hhcCccHHHHHHHHHHHHhhHHHHHHHHh------hccCCCHHHHhhhccchHHHHH
Confidence 3344566668888888887654 556753 66777777765444333321 2234433334444588887766
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHH
Q psy6067 118 GWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRL 197 (584)
Q Consensus 118 g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~ 197 (584)
.-...+.--...+. -|.+...-|..-. |...+.......+..++...+...+.+..-|...++
T Consensus 83 ~~~iyLsIGPffAi-----PRt~~vsfe~~i~------------p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~v 145 (431)
T COG1114 83 AIAIYLSIGPFFAI-----PRTGAVSFEVGIS------------PLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRV 145 (431)
T ss_pred HHHHHHHhcccccC-----CcccchhHHHhhh------------cccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 55444432222111 0111111111111 111111234455777888888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcc-hHHHHHHHHHHHHhhhhhhhhhcccccc
Q psy6067 198 NSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFG-LNGIIVGAAKCFFGFVGFDCIATTGEES 276 (584)
Q Consensus 198 ~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~i~~~~~af~G~e~~~~~~~E~ 276 (584)
-++++-.+++.++++.+..+...+.+ .+.+.+...+ .++ ..| ..|...+=..+.++|...-..+.-..-.
T Consensus 146 Gk~LTPilLv~l~il~i~~~~~p~g~-~~~a~~~y~~-------~pf-~~GfleGY~TMDaLAal~FgivIv~alk~~g~ 216 (431)
T COG1114 146 GKFLTPILLVLLLILVIAAIIPPAGP-ISAASGAYQS-------QPF-SKGFLEGYLTMDALAALAFGIVIVNALKSKGV 216 (431)
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCC-cccccHHHHh-------ChH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999988888866654322 1111111110 011 111 1122233234444554444333333444
Q ss_pred cCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc--ccccC---cC-CcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Q psy6067 277 KNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIP--YYEQD---AE-APFPHIFDSLGWPVMKWLVTVGSLFALLTAMFG 350 (584)
Q Consensus 277 knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p--~~~~~---~~-~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~ 350 (584)
+++ |++.|-.+.+-++..+...+....+...-+ .+... +. .-+.+..+...|+.+..+..+...++|+++..+
T Consensus 217 ~~~-~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiG 295 (431)
T COG1114 217 TTK-KQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVG 295 (431)
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 443 345554444444444433333333332222 21111 11 223444455677888899999999999999999
Q ss_pred hhchhHHHH
Q psy6067 351 ALFPLPRIL 359 (584)
Q Consensus 351 ~~~~~sR~l 359 (584)
...+++...
T Consensus 296 Li~a~aefF 304 (431)
T COG1114 296 LIVACAEFF 304 (431)
T ss_pred HHHHHHHHH
Confidence 888877654
No 87
>KOG1305|consensus
Probab=97.63 E-value=0.02 Score=61.22 Aligned_cols=250 Identities=13% Similarity=0.097 Sum_probs=128.5
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhch
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGE 111 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~ 111 (584)
+++-|.+..+.--...++|+|++..|.. ....|.. .++.....+++.....+...+.+.+.++. ....-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~a--fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYA--FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHH--HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 3456778888888999999999999865 3567753 56666677777777888888888887765 233333444554
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchh-h-HHHHHHHHHHHHHHHh
Q psy6067 112 FAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYP-D-FIAAGIVMLMSALISW 189 (584)
Q Consensus 112 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-ii~~~~l~l~~~in~~ 189 (584)
.-........-.. ...... +.+...+.+..+.......++... . +..... + +....++.-.+..+
T Consensus 80 ~g~~~~~v~~~~~-~~g~i~-------yliiigd~~p~~~~~~~~~~~~~~-~--~~~~~~~ill~~~~~i~pLsl~k-- 146 (411)
T KOG1305|consen 80 LGKVDAAVAVKCF-GVGMVS-------YLIIIGDLLPGFIRSLFLDEEGGS-H--YLDRNFLILLVLLFIILPLSLLK-- 146 (411)
T ss_pred CceeeehhhHHhh-hccceE-------EEEEEccccchhhhhccccccccc-c--cccceeEeehHHHHHHHHHHHHH--
Confidence 3311111111100 001011 111111111111110000000000 0 111111 1 11122222222222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcc--hHHHHHHHHHHHHhhhhhh
Q psy6067 190 GVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFG--LNGIIVGAAKCFFGFVGFD 267 (584)
Q Consensus 190 G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~i~~~~~af~G~e 267 (584)
.....+... .++...+..++...+.-....+.......+ ..+++ +.++..+++...++|+..+
T Consensus 147 ~l~~Lk~tS-~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~pi~~faf~Ch~ 211 (411)
T KOG1305|consen 147 NLDSLKYTS-ALSLASVVYFVVLVVYKYFQGPCALGRLSY--------------LVPNLSSFSSLFYALPIFVFAFTCHS 211 (411)
T ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHHHHHhcccccCCccc--------------ccCCcchhhhhhhhhhhhheeeeccc
Confidence 222222222 222222222222222222211110000000 11111 2468889999999999999
Q ss_pred hhhcccccccCcC-CCchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy6067 268 CIATTGEESKNPK-RDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE 313 (584)
Q Consensus 268 ~~~~~~~E~knP~-k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~ 313 (584)
.....-.|+|||+ |++-+....+...+.++|......-....+++.
T Consensus 212 n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 212 NVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred cceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccc
Confidence 9999999999985 678889999999999999998888777776654
No 88
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.62 E-value=0.18 Score=56.52 Aligned_cols=148 Identities=6% Similarity=-0.028 Sum_probs=87.5
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHH---HHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHh
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSV---VISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSI 109 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~---~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~l 109 (584)
.|+++++-......+..+++..|.......+. .|... .+++.++ ..+.++.+++.-++... -..++|.++-+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence 58999998777777777877777655443322 45432 1223222 22344556666555543 36888888889
Q ss_pred ch-hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 110 GE-FAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 110 G~-~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
|+ ....+++....+..+...+. ...+.+..++.+.+ . +....++ +..++.....-.
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~-------ql~~~~~~l~~~~g-i--------------~~~~~ii-i~~~i~~iYt~~ 162 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAG-------QMRGVGVVFSRFLE-V--------------DFETGVF-IGMAIVFFYAVL 162 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC-C--------------CHHHHHH-HHHHHHHHHHHh
Confidence 84 46777777777777777777 77777777777776 1 1111222 222334445556
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q psy6067 189 WGVSESTRLNSVFTFLNLGT 208 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ 208 (584)
-|.|...+...+=.++.++.
T Consensus 163 GG~~aV~~TD~iQ~iim~ig 182 (552)
T TIGR03648 163 GGMKGVTWTQVAQYIVLIVA 182 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 67886666555544444433
No 89
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.31 E-value=0.008 Score=65.32 Aligned_cols=172 Identities=11% Similarity=-0.042 Sum_probs=90.2
Q ss_pred cccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhc-Ch-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHh
Q psy6067 32 LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQA-GP-SVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSI 109 (584)
Q Consensus 32 l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~a-G~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~l 109 (584)
.+|+-++++.+.+=++..+....+..-... ...+ +. .++++.+++.++..+.....+.++.+... ......|..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl--~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL--PTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--Cchhcchhcc
Confidence 367778889888866655555544443332 1221 22 36677777766665555555555544422 3556667779
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCcccc-ccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 110 GEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLT-TDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 110 G~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
|..-..+......+..+...+. +....++.+....+ ...+.+.. +...........+..++.-++......
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av-------~~~~~g~al~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 153 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAV-------NTWLGGQALAALLG-IIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAI 153 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-CCC-----HH-----------HHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh-hhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHh
Confidence 9887778887777777777777 77788888887776 11110000 000000011111222333344555677
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVG 214 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i 214 (584)
.|.|...+++.+.........+...+
T Consensus 154 ~g~~~l~~~~~~~~~~~~~~~~~~~~ 179 (440)
T PF02133_consen 154 YGMKALRRLAVIAAPILLVVFIGMLI 179 (440)
T ss_dssp THHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cCHHHHHhHHhhhhHHHHhhhhheeE
Confidence 88888888887776655554443333
No 90
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.21 E-value=0.055 Score=59.19 Aligned_cols=234 Identities=15% Similarity=0.147 Sum_probs=126.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc--CCCcccccCCCccccccCCCCCCCCcc
Q psy6067 171 YPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMN--PRNWAIRKEDIPRTVRHGGTGGFAPFG 248 (584)
Q Consensus 171 ~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g 248 (584)
....+++++++....+.-+|....+++ +.-+.++=++.+.+.|+...- ++-+...++...-++ +..++
T Consensus 131 ~Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f-------~~~~~ 200 (534)
T PF02705_consen 131 YVVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRF-------FIRNG 200 (534)
T ss_pred eehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHH-------HHHcC
Confidence 345677888888888999997777765 444444444444455544321 111111000000000 11122
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhcccccccC-cCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHc
Q psy6067 249 LNGIIVGAAKCFFGFVGFDCIATTGEESKN-PKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSL 327 (584)
Q Consensus 249 ~~~~~~~i~~~~~af~G~e~~~~~~~E~kn-P~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~ 327 (584)
..++ ..+...+.+.+|-|+.-. |+-+ .+|++.++-..-+.-+.++.-+..-+....-|.+ .++|+....
T Consensus 201 ~~~~-~~LG~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~---~~npFf~~~--- 270 (534)
T PF02705_consen 201 WIGF-FVLGAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEA---VSNPFFLLI--- 270 (534)
T ss_pred Cchh-hhcchHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcch---hhhHHHHHh---
Confidence 2222 233456778899997654 3333 4566666655533333333333333333322211 255666554
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccch-hhhccCCCC-C---cchHHHHHHHHHHHHHHHHhCH
Q psy6067 328 GWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYD-CFSYVSPRT-K---TPVLSSLLTGALTAVLSAVFKL 402 (584)
Q Consensus 328 ~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~-~f~~~~~~~-~---~P~~Aill~~il~~~~~~~~~~ 402 (584)
.+|+.+-+.+.+.+++.-+..+.+.++--+..+.-+-|.+|+ ...+++++. | .|..--++......++..+.+-
T Consensus 271 -P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S 349 (534)
T PF02705_consen 271 -PEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSS 349 (534)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECCh
Confidence 335555555555556566667777777777888888999994 344455333 2 5665555544444444445577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6067 403 DQLVDMLSIGTLLAYTIVALSVL 425 (584)
Q Consensus 403 ~~l~~~~s~~~l~~y~l~~la~i 425 (584)
+.+.+.+.++......++.+...
T Consensus 350 ~~la~AYGiAVt~tM~iTT~L~~ 372 (534)
T PF02705_consen 350 SNLAAAYGIAVTGTMLITTILLF 372 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887777776655443
No 91
>PRK09950 putative transporter; Provisional
Probab=97.08 E-value=0.51 Score=51.80 Aligned_cols=95 Identities=12% Similarity=0.029 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCC-cchHHHHHHHHHHHHHHHHhC-HH---HHH
Q psy6067 332 MKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTK-TPVLSSLLTGALTAVLSAVFK-LD---QLV 406 (584)
Q Consensus 332 ~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~-~P~~Aill~~il~~~~~~~~~-~~---~l~ 406 (584)
+..++....++..+....+..-+++-.+-.++.+|.-++ .+|+.. -=.+++.+ ++++..+...+. ++ ...
T Consensus 400 ~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~----~~P~~~~ri~W~i~~-g~ia~~Ll~~gG~l~~lQ~~~ 474 (506)
T PRK09950 400 AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREG----DDPDRGLRLFWCVVI-TLIPLSILFTGASLDTMKTTV 474 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCC----CCCCcchhHHHHHHH-HHHHHHHHHhCCcHHHHHHHH
Confidence 445555556666666666777777777777777654321 122211 22233333 333344444443 54 455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q psy6067 407 DMLSIGTLLAYTIVALSVLILRYSE 431 (584)
Q Consensus 407 ~~~s~~~l~~y~l~~la~i~~r~~~ 431 (584)
.+.++...+..++.+.+.++--+++
T Consensus 475 ii~alP~~~i~~l~~~s~~k~l~~d 499 (506)
T PRK09950 475 VLTALPFLVILLIKVYGFIRWLKQD 499 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666777777777777776665443
No 92
>PRK09928 choline transport protein BetT; Provisional
Probab=96.55 E-value=1.2 Score=50.44 Aligned_cols=96 Identities=9% Similarity=-0.082 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCH---HHHHHH
Q psy6067 332 MKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKL---DQLVDM 408 (584)
Q Consensus 332 ~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~---~~l~~~ 408 (584)
+..++....++..+....++.-+.+-++-.++-.|.-|+. + .|+..-=.+++++ ++++..+...+.+ +...-+
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~--~-pp~~~RifW~v~i-g~la~~LL~~GGL~aLQt~sii 482 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS--D-APNWLRVFWSVAI-GLLTLGMLMTNGISALQNTTVI 482 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC--C-CCcceeeHHHHHH-HHHHHHHHHhcCHHHHHHHHHH
Confidence 3444444455555555666666677777777776543311 0 1122222334433 3444444555554 455666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy6067 409 LSIGTLLAYTIVALSVLILRYSE 431 (584)
Q Consensus 409 ~s~~~l~~y~l~~la~i~~r~~~ 431 (584)
.++.+.+..++.+.+.++.-+++
T Consensus 483 ~alPf~~I~ll~~~sl~k~l~~e 505 (679)
T PRK09928 483 MGLPFSFVIFFVMAGLYKSLKVE 505 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777777777788777765443
No 93
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.40 E-value=1.7 Score=46.67 Aligned_cols=299 Identities=11% Similarity=0.070 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeeh-HHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q psy6067 70 VVISFIIAALASALSGLCYVEFASRISKSGSAYNYT-YLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLK 148 (584)
Q Consensus 70 ~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~-~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~ 148 (584)
...+|..+..+ ..+..+|--+++-+- -.-++. .|.-.++.-.+++..-.+........ ...+.+..++
T Consensus 79 Y~iG~~~Gy~i---~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Ylia-------QmvGaG~li~ 147 (529)
T COG4147 79 YSIGWTGGYPI---LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIA-------QMVGAGLLIS 147 (529)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH-------HHHhhHHHHH
Confidence 34455554443 455566655555221 122223 33334455555655555555555556 7788888888
Q ss_pred HHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccc
Q psy6067 149 QLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIR 228 (584)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~ 228 (584)
.+++ . .+...+.+..++....+.+-|+|...+.|.+=.++.+...++..+....+.+.+.....
T Consensus 148 ~l~g-v---------------~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~ 211 (529)
T COG4147 148 LLLG-V---------------PYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLF 211 (529)
T ss_pred HHhC-C---------------CceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 8887 1 11223334444555667788899888888777666666666555544443322111100
Q ss_pred cCCCccccc----cCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhhcccccc---cCcCCCchhHHHHHHHHHHHHHHHH
Q psy6067 229 KEDIPRTVR----HGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIATTGEES---KNPKRDIPLSILLSLFIVFVCYLAI 301 (584)
Q Consensus 229 ~~~~~~~~~----~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~~~~~E~---knP~k~ip~ai~~~i~i~~viyil~ 301 (584)
......+.. ..-+.+.....+..++ ...+--..|.-..+|.--.. .| .|+.+|...+++..+..+|+..
T Consensus 212 ~~~~~~~~~~~~~~~~~pGl~~~~~i~~i---sl~~aLm~GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~~ 287 (529)
T COG4147 212 AEAVTVHPKDDGSDIMEPGLLYKDPIDFI---SLGFALMVGTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYILT 287 (529)
T ss_pred HHHhhcCcccCcccccCCCCcccCHHHHH---HHHHHHHHccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0111122222233333 33333334555555543211 11 2445567889999999999886
Q ss_pred HHHHHhh----c--ccc------------ccCc-------CCcHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHhhchh
Q psy6067 302 AIVLTLI----I--PYY------------EQDA-------EAPFPHIFDSLG-WPVMKWLVTVGSLFALLTAMFGALFPL 355 (584)
Q Consensus 302 ~~~~~~~----~--p~~------------~~~~-------~~p~~~~~~~~~-~~~~~~li~~~~~~s~~~s~~~~~~~~ 355 (584)
-..-... . |.. +.+. +.....+...++ ++|..-++..+.+...+++..+.+...
T Consensus 288 ~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~i 367 (529)
T COG4147 288 PIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVI 367 (529)
T ss_pred HHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHH
Confidence 6543221 1 111 1111 122344455666 688888888888888888777776655
Q ss_pred HHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh
Q psy6067 356 PRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF 400 (584)
Q Consensus 356 sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~ 400 (584)
+-.+-.==.++.+-+..++.. +-..-+.++.+..+++..+....
T Consensus 368 asavsHDiY~~vik~~ase~~-~v~vaRi~~v~~~vva~~lgi~~ 411 (529)
T COG4147 368 ASAVSHDLYAMVIKKGATEKK-EVRVARIAVVILGVVAILLGILP 411 (529)
T ss_pred HHHHHhHHHHHHhCCCCCccc-eehhHHHHHHHHHHHHHHheecC
Confidence 433211111122222233322 44455556666666666555544
No 94
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.37 E-value=1.1 Score=48.97 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=62.5
Q ss_pred cHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHH
Q psy6067 319 PFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSA 398 (584)
Q Consensus 319 p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~ 398 (584)
|-..+++....-++..+..+..++-.+.-..+..-.++-++..++.+| +.+|++-.-+.=-++.++++..+..
T Consensus 390 ~e~alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~-------~~~pp~~~r~~W~v~~~~ia~~lL~ 462 (537)
T COG1292 390 PETALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRG-------GEDPPRWVRVFWGVLIGLIAAVLLL 462 (537)
T ss_pred hhhHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccC-------CCCChHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333345555555555555556677777888888888776 2222222222223444555555666
Q ss_pred HhCHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy6067 399 VFKLD---QLVDMLSIGTLLAYTIVALSVLILRYSED 432 (584)
Q Consensus 399 ~~~~~---~l~~~~s~~~l~~y~l~~la~i~~r~~~~ 432 (584)
.+.++ ..+-+....+.+..++.+.+.++--++++
T Consensus 463 ~ggl~aLqt~~ii~alPF~~vll~~~~sl~k~l~~d~ 499 (537)
T COG1292 463 IGGLEALQTAAIITALPFSLVLLVMMFSLIKDLKQDY 499 (537)
T ss_pred hCCHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhhH
Confidence 66544 45556677778888888888888766654
No 95
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=96.30 E-value=2.3 Score=46.70 Aligned_cols=94 Identities=15% Similarity=0.025 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCC-CcchHHHHHHHHHHHHHHHHhCHH---HHHH
Q psy6067 332 MKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRT-KTPVLSSLLTGALTAVLSAVFKLD---QLVD 407 (584)
Q Consensus 332 ~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~-~~P~~Aill~~il~~~~~~~~~~~---~l~~ 407 (584)
+..++....++..+....+..-+++-.+-.++.+|.=++ .||+. .-=.+++.+ ++++..+...+.++ ....
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~----~~p~~~~ri~W~v~i-g~ia~~Ll~~GGl~~lQt~si 477 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDG----EEPPLLVRIGWSILV-GIIGIVLLALGGLKPIQTAII 477 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCC----CCCCcchhhHHHHHH-HHHHHHHHHhcCHHHHHHHHH
Confidence 444555555555556666667777777778877664221 12221 122233333 33444444544444 5556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy6067 408 MLSIGTLLAYTIVALSVLILRYS 430 (584)
Q Consensus 408 ~~s~~~l~~y~l~~la~i~~r~~ 430 (584)
+.++...+..++.+.+.++.-++
T Consensus 478 i~alPf~~i~~l~~~sl~k~l~~ 500 (504)
T PRK03356 478 AGGCPLFFVNIMVTLSFIKDAKQ 500 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677777777777777665544
No 96
>PLN00150 potassium ion transporter family protein; Provisional
Probab=96.28 E-value=0.46 Score=54.07 Aligned_cols=228 Identities=11% Similarity=0.064 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcc---cccCCCcccccCC-CccccccCCCCCCCCc
Q psy6067 172 PDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLF---KMNPRNWAIRKED-IPRTVRHGGTGGFAPF 247 (584)
Q Consensus 172 ~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 247 (584)
...+++++++.+..+.-+|....+++- .-+.++-++.+.++|+. ..++.-+...++. ..+-.. .+
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg~~F---gPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~--------~~ 282 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVSFLF---APIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFI--------RN 282 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhhhhh---ccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHH--------hC
Confidence 346778888888889888877666644 44444444444444444 3333222211110 000000 01
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHc
Q psy6067 248 GLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSL 327 (584)
Q Consensus 248 g~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~ 327 (584)
+..|+ ..+-.++.+.+|-|+.-.=-+-. .+|.|.++-..-+.=+.++.-+..-+...--|. ..++||...
T Consensus 283 ~~~g~-~~LG~V~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~---~~~npFf~~---- 352 (779)
T PLN00150 283 GRQGW-ESLGGIVLCMTGTEAMFADLGHF--TVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHME---DVNDPFYRS---- 352 (779)
T ss_pred CCceE-EEecceeeeecchhhhhccccCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHHHh----
Confidence 11111 12234567788999654333322 456676665544444444333333333332221 124566554
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccch-hhhccCCCCC----cchHHHHHHHHHHHHHHHHhCH
Q psy6067 328 GWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYD-CFSYVSPRTK----TPVLSSLLTGALTAVLSAVFKL 402 (584)
Q Consensus 328 ~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~-~f~~~~~~~~----~P~~Aill~~il~~~~~~~~~~ 402 (584)
..+++.+-+.+.+.+++.-+..+.+.+.=.+..+.-+-|.+|+ ..-+++++.. .|..--++......+...+.+-
T Consensus 353 iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s 432 (779)
T PLN00150 353 LPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDT 432 (779)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecCh
Confidence 2345555555555555555566666666677777778899993 3344443333 4554443333333333333366
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6067 403 DQLVDMLSIGTLLAYTIV 420 (584)
Q Consensus 403 ~~l~~~~s~~~l~~y~l~ 420 (584)
+.+.+.+.++.....+++
T Consensus 433 ~~l~~AYGiAV~~vM~iT 450 (779)
T PLN00150 433 DEIGNAYGIAVVGVMIIT 450 (779)
T ss_pred HHHHHHhhhheehhhHHH
Confidence 677777766654444443
No 97
>PLN00149 potassium transporter; Provisional
Probab=96.22 E-value=0.21 Score=56.85 Aligned_cols=230 Identities=13% Similarity=0.079 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcc---cccCCCcccccCC-CccccccCCCCCCCCcc
Q psy6067 173 DFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLF---KMNPRNWAIRKED-IPRTVRHGGTGGFAPFG 248 (584)
Q Consensus 173 ~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 248 (584)
..+++++++.+..+..+|....+++- .-+.++-++.+..+|+. ..++.-+...++. ..+-.. .++
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg~~F---gPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~--------~~~ 267 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVGFLF---APVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLK--------KTQ 267 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHhhhh---hhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHH--------HCC
Confidence 35778888888888888877666644 44444444444444444 3333322211110 000000 011
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcC
Q psy6067 249 LNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLG 328 (584)
Q Consensus 249 ~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~ 328 (584)
..| +..+-.++.+.+|-|+.-.=-+-. .+|.|.++-..-+.=+.++.-+..-+...--|....+-++||... .
T Consensus 268 ~~g-~~~LGgV~L~iTG~EALyADlGHF--~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~----i 340 (779)
T PLN00149 268 RGG-WMSLGGILLCITGSEAMFADLGHF--SQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVS----V 340 (779)
T ss_pred Cce-eEeecchhhcccchhhhhhcccCC--CccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHh----C
Confidence 111 112334567889999654333322 456676666554444444433444433332222111223465554 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccch-hhhccCCCCC----cchHHHHHHHHHHHHHHHHhCHH
Q psy6067 329 WPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYD-CFSYVSPRTK----TPVLSSLLTGALTAVLSAVFKLD 403 (584)
Q Consensus 329 ~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~-~f~~~~~~~~----~P~~Aill~~il~~~~~~~~~~~ 403 (584)
.++..+-+.+.+.+++.-+..+.+.+.=.+..+.-+-|.+|+ ..-+++++.. .|..--++......+...+.+-+
T Consensus 341 P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~ 420 (779)
T PLN00149 341 PEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTK 420 (779)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChH
Confidence 345555555555555555566666666677777778899993 3334443332 45444333333333233333566
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6067 404 QLVDMLSIGTLLAYTIV 420 (584)
Q Consensus 404 ~l~~~~s~~~l~~y~l~ 420 (584)
.+.+.+.++.....+++
T Consensus 421 ~l~~AYGiAV~~vM~iT 437 (779)
T PLN00149 421 RLGNASGLAVITVMLVT 437 (779)
T ss_pred HHHHHhhhhhehHHHHH
Confidence 77777766554444433
No 98
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=96.16 E-value=0.15 Score=57.31 Aligned_cols=235 Identities=14% Similarity=0.073 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCC-CccccccCCCCCCCCcchH
Q psy6067 172 PDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKED-IPRTVRHGGTGGFAPFGLN 250 (584)
Q Consensus 172 ~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 250 (584)
...+++++++....+.-+|....+++---...+=++.+.++.+..+...++.-+...++. ..+- +..++..
T Consensus 168 Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f--------~~~~~~~ 239 (688)
T TIGR00794 168 VVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQF--------FIEYGTV 239 (688)
T ss_pred ehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHH--------HHHCCCc
Confidence 346777888888888888877666644433333333333333333333222211111110 0000 0011111
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChh
Q psy6067 251 GIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWP 330 (584)
Q Consensus 251 ~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~ 330 (584)
++ ..+...+.+.+|-|+.-.=-+-. -+|+|.++-..-+.-+.++.-+..-+....-| + ...+||... ..+
T Consensus 240 ~~-~~LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~ 309 (688)
T TIGR00794 240 GW-VSLGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-E--AIKNPFFLS----IPD 309 (688)
T ss_pred ee-eeccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHhcCc-c--hhcCcHHHh----Cch
Confidence 11 12334577889999654333322 35667666554444443333333333333222 1 125676655 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccch-hhhccCCCCC----cchHHHHHHHHHHHHHHHHhCHHHH
Q psy6067 331 VMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYD-CFSYVSPRTK----TPVLSSLLTGALTAVLSAVFKLDQL 405 (584)
Q Consensus 331 ~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~-~f~~~~~~~~----~P~~Aill~~il~~~~~~~~~~~~l 405 (584)
|..+-+.+.+.+++.-+..+.+.++=.+..+.-+-|.+|+ ..-+++++.. .|..--++......+...+.+-+.+
T Consensus 310 ~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~l 389 (688)
T TIGR00794 310 WALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNL 389 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHH
Confidence 5555555555556555666666677677777788899993 3445554422 4555444443333333334467778
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6067 406 VDMLSIGTLLAYTIVALSV 424 (584)
Q Consensus 406 ~~~~s~~~l~~y~l~~la~ 424 (584)
.+.+.++.....+++.+-.
T Consensus 390 a~AYGiaVt~tM~iTT~L~ 408 (688)
T TIGR00794 390 GAAYGIAVTGTFLVTTCLM 408 (688)
T ss_pred HHHhhhhhhhhhHHHHHHH
Confidence 8877777666665554433
No 99
>PLN00148 potassium transporter; Provisional
Probab=95.86 E-value=0.19 Score=57.03 Aligned_cols=230 Identities=13% Similarity=0.044 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCC-CccccccCCCCCCCCcchH
Q psy6067 172 PDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKED-IPRTVRHGGTGGFAPFGLN 250 (584)
Q Consensus 172 ~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 250 (584)
...+++++++.+..+..+|....+++---...+=++.+..+.+..+.+.++.-+...++. ..+-. ..++..
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff--------~~~~~~ 268 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFF--------RVTGKD 268 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHH--------HhCCCc
Confidence 346778888888889988877666644333333333333333334333333322211110 00000 011111
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChh
Q psy6067 251 GIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWP 330 (584)
Q Consensus 251 ~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~ 330 (584)
|+ ..+-.++.+.+|-|+.-.=-+-. .+|.|.++-..-+.=+.++.-+..-+...--| + ..++||.... .+
T Consensus 269 g~-~~LGgV~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~--~~~npFf~~i----P~ 338 (785)
T PLN00148 269 GW-ISLGGILLSITGTEAMFADLGHF--TAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-P--SIPNSFYDSI----PD 338 (785)
T ss_pred eE-EeecchheeccchhhhhhhccCC--CccceEEeeeehHHHHHHHHHcchHHHHhcCc-c--cccCcHHHhC----Cc
Confidence 11 12334567888999654333322 45667666554444444433333433333222 1 1245665542 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccch-hhhccCCCCC----cchHHHHHHHHHHHHHHHHhCHHHH
Q psy6067 331 VMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYD-CFSYVSPRTK----TPVLSSLLTGALTAVLSAVFKLDQL 405 (584)
Q Consensus 331 ~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~-~f~~~~~~~~----~P~~Aill~~il~~~~~~~~~~~~l 405 (584)
+..+-+.+.+.+++.-+..+.+.+.=.+..+.-+-|.+|+ ..-+++++.. .|..--++......+...+.+-+.+
T Consensus 339 ~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l 418 (785)
T PLN00148 339 PVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLI 418 (785)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhH
Confidence 4555555555555555556666666677777777899993 3344543332 4555444433333333333356667
Q ss_pred HHHHHHHHHHHHHH
Q psy6067 406 VDMLSIGTLLAYTI 419 (584)
Q Consensus 406 ~~~~s~~~l~~y~l 419 (584)
.+.+.++.....++
T Consensus 419 a~AYGiAV~~vM~i 432 (785)
T PLN00148 419 GNAYGLACMTVMFI 432 (785)
T ss_pred HHhhhhheeeHHHH
Confidence 66666555444433
No 100
>PLN00151 potassium transporter; Provisional
Probab=95.79 E-value=0.21 Score=56.93 Aligned_cols=231 Identities=13% Similarity=0.035 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCC-CccccccCCCCCCCCcchH
Q psy6067 172 PDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKED-IPRTVRHGGTGGFAPFGLN 250 (584)
Q Consensus 172 ~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 250 (584)
...+++++++.+..+.-+|....+++---...+=++.+..+.+..+.+.++.-+...++. ..+-+...+. .||
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~-----~gw- 347 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNST-----KAW- 347 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCC-----ceE-
Confidence 346778888888889999977766654333333333333334444433333222211110 0000000000 111
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChh
Q psy6067 251 GIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWP 330 (584)
Q Consensus 251 ~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~ 330 (584)
..+-.++.+.+|-|+.-.=-+-. .+|.|.++-..-+.=+.++.-+..-+...--|. ..++||... ..+
T Consensus 348 ---~~LGgVvLciTGaEALfADLGHF--g~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~---~~~npFy~s----vP~ 415 (852)
T PLN00151 348 ---SALGGCVLCATGSEAMFADLGYF--SVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPD---SAEQIFFSS----VPS 415 (852)
T ss_pred ---EEecceeeeeccchhhhcccCCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHHHh----CCc
Confidence 12234467788988654333322 456666665544444444333333333332221 124565544 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccch-hhhccCCCCC----cchHHHHHHHHHHHHHHHHhCHHHH
Q psy6067 331 VMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYD-CFSYVSPRTK----TPVLSSLLTGALTAVLSAVFKLDQL 405 (584)
Q Consensus 331 ~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~-~f~~~~~~~~----~P~~Aill~~il~~~~~~~~~~~~l 405 (584)
++.|-+.+.+.+++.-+..+.+.+.=.+..+.-+-|.+|+ ..-+++++.. .|..--++......+...+.+-+.+
T Consensus 416 ~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l 495 (852)
T PLN00151 416 SLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDI 495 (852)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHH
Confidence 4555455555555555556666666667777777899993 3344443322 4554443333333333333366777
Q ss_pred HHHHHHHHHHHHHHH
Q psy6067 406 VDMLSIGTLLAYTIV 420 (584)
Q Consensus 406 ~~~~s~~~l~~y~l~ 420 (584)
.+.+.++.....+++
T Consensus 496 ~~AYGiAV~~vM~iT 510 (852)
T PLN00151 496 GNAYGIAEVGVMMVS 510 (852)
T ss_pred HHHhhhhhhhhhhHH
Confidence 777766655444443
No 101
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.65 E-value=3.3 Score=43.05 Aligned_cols=218 Identities=13% Similarity=0.114 Sum_probs=105.9
Q ss_pred hchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHH
Q psy6067 109 IGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALIS 188 (584)
Q Consensus 109 lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~ 188 (584)
=++..-++++....+.....+.+ .-.+.+..+....+ . .+...+.+.-..+.....+
T Consensus 117 ~s~fl~~las~~Lifff~~~m~~-------qfiGgarLlE~~~g-i---------------dY~tgL~ifa~~V~iYt~f 173 (473)
T COG4145 117 QSRFLVWLASLSLIFFFVGAMTV-------QFIGGARLLETALG-I---------------DYTTGLLIFAVSVAIYTAF 173 (473)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHC-C---------------CchhhHHHHHHHHHHHHhh
Confidence 46788889999888888888888 88999999998887 1 1111111111222334455
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc-CCCcccccCCCccccccCCCCCCCCcchHH-HHHHHHHHHHhhhhh
Q psy6067 189 WGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMN-PRNWAIRKEDIPRTVRHGGTGGFAPFGLNG-IIVGAAKCFFGFVGF 266 (584)
Q Consensus 189 ~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~i~~~~~af~G~ 266 (584)
-|.|.+...-.+=..+.++.-+++.+..+..++ .++.-..-.+..... ..|.+... .-.-+...+|...|+
T Consensus 174 GGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~l-------v~P~~~~~~l~~~Fm~Sfwilv~~ 246 (473)
T COG4145 174 GGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGL-------VTPQGADDILDPPFMASFWILVCF 246 (473)
T ss_pred cceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccc-------cCCCCCcccccchHHHHHHHHHHH
Confidence 667755444444344444433333332222111 010000000000000 11111100 011112233433333
Q ss_pred h-----hhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHH--Hh-hccccccCcCCcHHHHHHHcChhHHHHHHHH
Q psy6067 267 D-----CIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVL--TL-IIPYYEQDAEAPFPHIFDSLGWPVMKWLVTV 338 (584)
Q Consensus 267 e-----~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~--~~-~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~ 338 (584)
. ....-.-..|| +|.+.++|+++.+++.++-+.+-++- +- +.|+-. ..|.-....+-....|...-++..
T Consensus 247 gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt-~~D~Vip~lalkvlpp~~agifl~ 324 (473)
T COG4145 247 GVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLT-VVDLVIPTLALKVLPPFAAGIFLA 324 (473)
T ss_pred HHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCC-ccchhHHHHHHHhcchHHHHHHHH
Confidence 3 23333334566 58888999988888877655544331 11 122221 223333444445555655556666
Q ss_pred HHHHHHHHHHHHhhchhHHH
Q psy6067 339 GSLFALLTAMFGALFPLPRI 358 (584)
Q Consensus 339 ~~~~s~~~s~~~~~~~~sR~ 358 (584)
+.+.+..++.++.+.-.|-.
T Consensus 325 apmaAiMSTIds~L~~~sst 344 (473)
T COG4145 325 APMAAIMSTINSQLLQSSST 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666777777776655543
No 102
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.54 E-value=1.9 Score=47.95 Aligned_cols=102 Identities=23% Similarity=0.290 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhh-hhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc---------ccccCcCC--
Q psy6067 251 GIIVGAAKCFFGF-VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIP---------YYEQDAEA-- 318 (584)
Q Consensus 251 ~~~~~i~~~~~af-~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p---------~~~~~~~~-- 318 (584)
-+..++..++|+. .|+.....++.-.|+ ++|++|........-..+.++..+.+...+. -++..++.
T Consensus 250 vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~ 328 (523)
T PF00209_consen 250 VWIAALGQVFFSLSIGFGIMITYGSYNKF-KNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPG 328 (523)
T ss_dssp HHHHHHHHHHHHTTTTSSHHHHHHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHH
T ss_pred HHHHHHHHHhhccCCCcceEEEEcCcCCC-CccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCC
Confidence 3566777888876 578888888888776 5778886665555555544443333322221 11111222
Q ss_pred ----cHHHHHHHc-ChhHHHHHHHHHHHHHHHHHHHHhhc
Q psy6067 319 ----PFPHIFDSL-GWPVMKWLVTVGSLFALLTAMFGALF 353 (584)
Q Consensus 319 ----p~~~~~~~~-~~~~~~~li~~~~~~s~~~s~~~~~~ 353 (584)
.+..++.++ +++....+...+.+++.+++..+.+-
T Consensus 329 L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E 368 (523)
T PF00209_consen 329 LAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLE 368 (523)
T ss_dssp HHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCcee
Confidence 233344444 34455555555555555555555443
No 103
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.25 E-value=1.3 Score=49.36 Aligned_cols=234 Identities=14% Similarity=0.065 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccc--cCCCcccccCCCccccccCCCCCCCCcc
Q psy6067 171 YPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKM--NPRNWAIRKEDIPRTVRHGGTGGFAPFG 248 (584)
Q Consensus 171 ~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g 248 (584)
+...+++++++....+.-+|....+++- +-+.++-++.+.+.|+... +++-+...++...-++ +..++
T Consensus 142 ~Vvpit~~ILv~LF~iQ~~GT~~vG~~F---gPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f-------~~~~~ 211 (622)
T PRK10745 142 YIVPLSIIVLTLLFMIQKHGTGMVGKLF---APIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHF-------FLEYK 211 (622)
T ss_pred ccHHHHHHHHHHHHHHhccccHHHhhhh---hhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHH-------HHhCC
Confidence 3456777788888888888877666644 4444444444444444422 1111111000000000 00111
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcC
Q psy6067 249 LNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLG 328 (584)
Q Consensus 249 ~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~ 328 (584)
..++ ..+...+.+.+|-|+.-.=-+- -.+|+|.++-..-..=+.++.-+..-+...--| ...++|+....
T Consensus 212 ~~gf-~~LG~V~L~vTGaEALYADmGH--FG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p---~~~~NpFf~~~---- 281 (622)
T PRK10745 212 TVSF-FALGAVVLAITGVEALYADMGH--FGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP---EAIKNPFFLLA---- 281 (622)
T ss_pred CceE-EEecceeeeccchHHHhhccCC--CCccceeeeehhhHHHHHHHHhcchHHHHhcCc---hhhcCcHHHhC----
Confidence 1111 1223456678898865433332 245667666554444333333333333332111 11256766552
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccch-hhhccCCCCC----cchHHHHHHHHHHHHHHHHhCHH
Q psy6067 329 WPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYD-CFSYVSPRTK----TPVLSSLLTGALTAVLSAVFKLD 403 (584)
Q Consensus 329 ~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~-~f~~~~~~~~----~P~~Aill~~il~~~~~~~~~~~ 403 (584)
.+|+.+-+.+.+.+++.-+..+.+.++=.+..+.-+-|.+|+ ...+++++.. .|..--++......+...+.+-+
T Consensus 282 P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~ 361 (622)
T PRK10745 282 PDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSS 361 (622)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCch
Confidence 345555555555555555556666666677777778899993 3445554322 45544333333333333334667
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6067 404 QLVDMLSIGTLLAYTIVALSV 424 (584)
Q Consensus 404 ~l~~~~s~~~l~~y~l~~la~ 424 (584)
.+.+.+.++......++.+-.
T Consensus 362 ~La~AYGiAVt~tM~iTT~L~ 382 (622)
T PRK10745 362 NLAAAYGIAVTGTMVLTSILS 382 (622)
T ss_pred HHHHHhhhhheeHhHHHHHHH
Confidence 777777776655555554433
No 104
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=94.61 E-value=8.3 Score=41.92 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhC-HH---HHHH
Q psy6067 332 MKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFK-LD---QLVD 407 (584)
Q Consensus 332 ~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~-~~---~l~~ 407 (584)
+..++....++..+....+..-.++-.+-.++.++.-++. +- |+...=.+++.+ ++++..+...+. ++ .+..
T Consensus 354 ~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~--ep-~~~~ri~W~v~i-g~~a~~ll~~gG~l~~lQ~~~i 429 (453)
T TIGR00842 354 LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGE--EP-PKWVRVFWAVAI-GLIALVLLFSGGSLAALQTTAI 429 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC--CC-CcccchHHHHHH-HHHHHHHHHhcCcHHHHHHHHH
Confidence 4444555555555555666666667777766553321110 01 122223344444 334444445444 54 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy6067 408 MLSIGTLLAYTIVALSVLILR 428 (584)
Q Consensus 408 ~~s~~~l~~y~l~~la~i~~r 428 (584)
+.++...+..++.+.+.++.-
T Consensus 430 i~alP~~~i~~l~~~sl~k~l 450 (453)
T TIGR00842 430 IAALPFSLVMLVVMASLIKDL 450 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777766554
No 105
>KOG2466|consensus
Probab=91.92 E-value=21 Score=38.63 Aligned_cols=314 Identities=12% Similarity=-0.027 Sum_probs=143.4
Q ss_pred CCccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcC-h-HHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceee
Q psy6067 27 GSREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAG-P-SVVISFIIAALASALSGLCYVEFASRISKSGSAYNY 104 (584)
Q Consensus 27 ~~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG-~-~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~ 104 (584)
++-++-||..|+++.+++=.+..++.+-+...++.. +.+- + ..+..++++=++..+....-+.-++.+-. +.-.-
T Consensus 47 ~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l-~lGLswwq~~~tv~vG~~~~~~f~~lns~~G~~yhI--sFpv~ 123 (572)
T KOG2466|consen 47 KPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSAL-ELGLSWWQTWITVWVGYLFTAIFLVLNSRPGSDYHI--SFPVL 123 (572)
T ss_pred CcCCcccccccHHHHHHHHHhccccccceeehhhHH-hccCCHHHHHHHHHHHHHHHHHHHHHccCCCccccc--ceeee
Confidence 344455789999999999777777777777666532 3321 2 26666666655555444433333332211 12222
Q ss_pred hHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCC--CCccccccCCCCCCchhhHHHHHHHHH
Q psy6067 105 TYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGG--ETSTLTTDRYSFLSTYPDFIAAGIVML 182 (584)
Q Consensus 105 ~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ii~~~~l~l 182 (584)
.+-.||-.....--....+..++.-+. ++...++.++-++.+.. ....-.....+...+.+.+.-+++=++
T Consensus 124 sR~sFGiygS~~pIi~R~vma~vwYg~-------~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~ 196 (572)
T KOG2466|consen 124 SRSSFGIYGSLWPIINRVVMACVWYGV-------NAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVA 196 (572)
T ss_pred eeeehhhhHhHHHHHHHHHHHHhhhhh-------hhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHH
Confidence 333355433333333333333444444 55555565555444110 111111111122233333333333334
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-CCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHH
Q psy6067 183 MSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNP-RNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFF 261 (584)
Q Consensus 183 ~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~ 261 (584)
....-.+++....++..+-.+......+.+.+..+.+.+. ++......+.. -..+.| .++.++ ..
T Consensus 197 s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~----------gs~~aW-a~~~~i---~~ 262 (572)
T KOG2466|consen 197 SLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVS----------GSAHAW-AFVRSI---MS 262 (572)
T ss_pred hhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCccc----------ccchhH-HHHHHH---HH
Confidence 4455566666777766666666655666666666654332 11111011000 112223 244433 33
Q ss_pred hhhhhhh----hhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc--cccCcCC--cHHHHHHHc------
Q psy6067 262 GFVGFDC----IATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPY--YEQDAEA--PFPHIFDSL------ 327 (584)
Q Consensus 262 af~G~e~----~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~--~~~~~~~--p~~~~~~~~------ 327 (584)
.+.+|.. .+..+.-.|+|.+ .+.+.+.++.+... ..-.++.++.. +.+.+.+ .-.+++.+.
T Consensus 263 ~~~~fstl~~N~pDFsRF~ksp~a-~~~~Ql~alp~~~~----l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~ 337 (572)
T KOG2466|consen 263 CIANFSTLIVNAPDFSRFAKSPNA-IWWGQLIALPLPFG----LTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYS 337 (572)
T ss_pred HHhccchhhccCchhHhhcCCCCc-cchhhhhhhhhhhh----hhhheeeEehhhhhhhhcccccCHHHHHHHHhccccc
Confidence 4444443 4444445555533 33444433333322 22222222221 1222211 223344433
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhh
Q psy6067 328 -GWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFS 373 (584)
Q Consensus 328 -~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~ 373 (584)
|...+.-++..+..++.+++..+.-..+ .++.-.+++||++.
T Consensus 338 ~G~RAgvFfi~~~f~laql~~NISan~va----agnDl~~L~Pkyin 380 (572)
T KOG2466|consen 338 AGARAGVFFIGFGFALAQLGTNISANSVA----AGNDLSALLPKYIN 380 (572)
T ss_pred cccchhhhHHHHHHHHHHHhcchhccccc----cchhhHhhCcceEE
Confidence 4456777778888888777654433222 22333467787654
No 106
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=91.33 E-value=8.4 Score=42.30 Aligned_cols=235 Identities=13% Similarity=0.084 Sum_probs=110.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccc--cCCCcccccCCCccccccCCCCCCCC
Q psy6067 169 STYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKM--NPRNWAIRKEDIPRTVRHGGTGGFAP 246 (584)
Q Consensus 169 ~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (584)
..+...+++++++....+.-.|...+++ ++.-+.++-++.+...|+.+. +++-....++...-++ +.+
T Consensus 145 ~~~Vvpitl~IL~~LF~iQ~~GT~~Vg~---~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~f-------l~~ 214 (627)
T COG3158 145 DPYVVPITLIILVLLFLIQRFGTGRVGK---LFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHF-------LLE 214 (627)
T ss_pred cCccHHHHHHHHHHHHHHhcccchhhhh---hhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHH-------HHh
Confidence 3455677888888888888888777766 445555555555555555532 1111111000000000 001
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccc-cCcCCcHHHHHH
Q psy6067 247 FGLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE-QDAEAPFPHIFD 325 (584)
Q Consensus 247 ~g~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~-~~~~~p~~~~~~ 325 (584)
+++.|++ .+-..+.+.+|-|+.-.=-+-. -+|+|.+|=.....=+. +.+++-.+..--.+ -...+|+...+
T Consensus 215 ~~~~gf~-vLGaVfLavTGaEALYADmGHf--Gr~pI~~AWf~vv~P~L----~LNY~GQGA~vL~~p~a~~npFF~~~- 286 (627)
T COG3158 215 EGFVGFF-VLGAVFLAVTGAEALYADMGHF--GRKPIRVAWFFVVLPCL----LLNYFGQGALLLSNPEAIGNPFFLLA- 286 (627)
T ss_pred CCceEEE-EeeeeeeeeccHHHHHhhcccc--CCccHHHHHHHHHHHHH----HHHHccccceeccCcccccCcHHHhC-
Confidence 1222111 1123356778888654322222 34555444333222122 22222222111111 11245644433
Q ss_pred HcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccch-hhhccCCC-CC---cchHHHHHHHHHHHHHHHHh
Q psy6067 326 SLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYD-CFSYVSPR-TK---TPVLSSLLTGALTAVLSAVF 400 (584)
Q Consensus 326 ~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~-~f~~~~~~-~~---~P~~Aill~~il~~~~~~~~ 400 (584)
..|.-+-+.+.+..++.-+..+.+.++=-+..+.-+-|++|+ ...+++++ .| .|..-.++...+..++..+.
T Consensus 287 ---P~~aliP~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~ 363 (627)
T COG3158 287 ---PDWALIPLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFG 363 (627)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEec
Confidence 233322222223333333334444455455555666799993 34444433 22 67776666555555555555
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q psy6067 401 KLDQLVDMLSIGTLLAYTIVALSV 424 (584)
Q Consensus 401 ~~~~l~~~~s~~~l~~y~l~~la~ 424 (584)
+-+.+...+.++......++.+-.
T Consensus 364 ~S~~LAaAYGiAVTgtM~iTt~L~ 387 (627)
T COG3158 364 SSSNLAAAYGIAVTGTMVITTILL 387 (627)
T ss_pred ChHHHHHhhChheeehhHHHHHHH
Confidence 677777777776666555554433
No 107
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=88.17 E-value=40 Score=36.02 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=31.5
Q ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy6067 320 FPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAM 362 (584)
Q Consensus 320 ~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~ 362 (584)
..+..+...+++...++.++.+.+.+++..+..++..-.+...
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344455677888899999999999998888888665554444
No 108
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=83.71 E-value=62 Score=34.07 Aligned_cols=58 Identities=12% Similarity=-0.034 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhhhh---hhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy6067 255 GAAKCFFGFVGFDC---IATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYE 313 (584)
Q Consensus 255 ~i~~~~~af~G~e~---~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~ 313 (584)
-+..++=+..||-+ ....++.++| +|+...--..+++.-+++-++...+.....+.+.
T Consensus 292 FITIACGAiSGFHsLv~SgttsKql~~-E~d~r~VgYGaMl~Eg~lAli~~~a~~~~~~~~~ 352 (376)
T PF02554_consen 292 FITIACGAISGFHSLVSSGTTSKQLDK-EKDARPVGYGAMLTEGFLALIWLAAAMAFFPGDY 352 (376)
T ss_pred HHHHHhhhhcchhhhhcCCCcHhhHhc-ccccceeehhHHHHHHHHHHHHHHHHHHhcccch
Confidence 34567777888876 5566677776 6888888888888888888887777777665543
No 109
>KOG4303|consensus
Probab=82.89 E-value=7.4 Score=40.11 Aligned_cols=357 Identities=13% Similarity=0.096 Sum_probs=181.1
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCcCCcee------
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRI-SKSGSAYN------ 103 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~-P~~GG~y~------ 103 (584)
+-+.+++.+++-.=...++-| .|+..-..+.-.+|.+++.+.+..+.++.-++-...| ..| |..-|...
T Consensus 112 e~~~kI~a~qAaWNVTNAIQG--MFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~--CLYE~~~dGevVrvRdsY 187 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQG--MFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIE--CLYENGEDGEVVRVRDSY 187 (524)
T ss_pred CCCCccHHHHHhhhhhhhhhe--eeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhh--hhccCCCCCcEEEeehhH
Confidence 334678888887776666544 3443333444556766666555544444333332222 122 22233333
Q ss_pred -ehHHH-hchhHH-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHH
Q psy6067 104 -YTYLS-IGEFAA-YIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIV 180 (584)
Q Consensus 104 -~~~~~-lG~~~g-~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l 180 (584)
-+.+. ++|.+| ..+.....+....++-. +....++.+..-+++...+ ...+. ++..+.+
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIl-------YvVv~gdLl~~~fP~~svd----------~~sWm-~i~~a~L 249 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCIL-------YVVVAGDLLQSCFPGLSVD----------KASWM-MITSASL 249 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHh-------hhheechhhhccCCCCCcc----------ccchh-hhhhHHH
Confidence 33333 667666 45555555555666666 7778888888777733222 11222 2323332
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHH
Q psy6067 181 MLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCF 260 (584)
Q Consensus 181 ~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~ 260 (584)
. ..--+...|.+.++..++++..++.-++++..++.... +|.-....+.-+. ..+=..+-++.
T Consensus 250 L--pc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~--dW~wskv~Fsidi-------------~~fPisvG~iV 312 (524)
T KOG4303|consen 250 L--PCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVS--DWSWSKVTFSIDI-------------NTFPISVGMIV 312 (524)
T ss_pred h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccceeEEEEEEc-------------ccCceEEEEEE
Confidence 3 33345678899999999999999988888888876543 2321111111000 01111223457
Q ss_pred HhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChhHHHHHHHHHH
Q psy6067 261 FGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGS 340 (584)
Q Consensus 261 ~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~~ 340 (584)
|+|+---..+++-+.+|||.+ .---+-++=+...++=.+..+.......++.. -.+-.++.+.-...++++..
T Consensus 313 FsYTSqIFLP~LEGNM~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~Tq------evItnnLp~qsfk~~VN~fL 385 (524)
T KOG4303|consen 313 FSYTSQIFLPNLEGNMKNPSQ-FNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQ------EVITNNLPNQSFKILVNLFL 385 (524)
T ss_pred EeeeceeeccccccccCChhH-heeeeehHHHHHHHHHHHHHHheeeeechhhH------HHHhcCCCccchhhhhhHHH
Confidence 888888888999999999976 33445566666655555544443333332211 01112222333445555555
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHhcC----ccchhhh---ccCCCCCcchHHHHHHHHHHHHHHHH-hCHHHHHHHHH--
Q psy6067 341 LFALLTAMFGALFPLPRILYAMSLDG----LLYDCFS---YVSPRTKTPVLSSLLTGALTAVLSAV-FKLDQLVDMLS-- 410 (584)
Q Consensus 341 ~~s~~~s~~~~~~~~sR~l~a~A~dg----~lP~~f~---~~~~~~~~P~~Aill~~il~~~~~~~-~~~~~l~~~~s-- 410 (584)
++=.+-+----.+++..++..--..| .+|...+ ++. .++.-.+..++. .+++.++. ..|..+..+..
T Consensus 386 V~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk-~WgltlR~~lvv--fTllmAi~vPhf~~LMGl~Gs~ 462 (524)
T KOG4303|consen 386 VVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLK-EWGLTLRIILVV--FTLLMAISVPHFVELMGLVGSI 462 (524)
T ss_pred HHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchh-hheeeeeeHHHH--HHHHHHHHhHHHHHHHHhhccc
Confidence 44433333333344444433222122 2232211 121 233333322221 11111111 13444544443
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCC
Q psy6067 411 IGTLLAYTIVALSVLILRYSEDGADT 436 (584)
Q Consensus 411 ~~~l~~y~l~~la~i~~r~~~~~~~~ 436 (584)
-+.+++++..++-.++.+.+.-++++
T Consensus 463 TGtmLsFiwP~lFHl~ik~~~L~~~e 488 (524)
T KOG4303|consen 463 TGTMLSFIWPALFHLYIKEKTLNNFE 488 (524)
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhHH
Confidence 35688999999988888777654443
No 110
>PTZ00206 amino acid transporter; Provisional
Probab=80.06 E-value=91 Score=34.15 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=46.2
Q ss_pred CCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhh
Q psy6067 317 EAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFS 373 (584)
Q Consensus 317 ~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~ 373 (584)
...+.++.+...++++.+++.+..++..+++..+++...+..+...-++...|+++.
T Consensus 120 ~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 346888888887899999999999999999999999999988877765544455554
No 111
>KOG3660|consensus
Probab=78.53 E-value=1.3e+02 Score=34.35 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=41.1
Q ss_pred CHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHH----HHHHHHHHHHHHHHhhhcc
Q psy6067 37 GLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFII----AALASALSGLCYVEFASRI 95 (584)
Q Consensus 37 s~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll----~~l~~l~~al~~aEL~s~~ 95 (584)
+..|.++.++|..+|-|-+.+......+++|...++.+++ .++..+..-++..+..++-
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g 101 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQG 101 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCC
Confidence 6788888899999999999988877878888654444443 4444444555555555543
No 112
>COG4146 Predicted symporter [General function prediction only]
Probab=53.01 E-value=3.1e+02 Score=29.10 Aligned_cols=279 Identities=12% Similarity=0.065 Sum_probs=123.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhcccC-cCCceeehHHHhchhHHHHHHHHHHHHHHH-HhhhhhhhhhhHHHHHH
Q psy6067 67 GPSVVISFIIAALASALSGLCYVEFASRISK-SGSAYNYTYLSIGEFAAYIIGWNLELFIEV-QAFCIEFSRIREAAALF 144 (584)
Q Consensus 67 G~~~~l~~ll~~l~~l~~al~~aEL~s~~P~-~GG~y~~~~~~lG~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~ 144 (584)
|..+..+|=+...+.++....| -+-....+ ---+.++.++-|++..-.....++.++|.. ..+. ..+..+
T Consensus 71 ~~~svmaWeVts~i~L~flAl~-~lprylK~GitTIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPt-------vLYsGA 142 (571)
T COG4146 71 GNMSVMAWEVTSVIPLIFLALY-FLPRYLKRGITTIPDFLEERFDKTTRMIISFLFLIAYGVCFLPT-------VLYSGA 142 (571)
T ss_pred CCeEEEEEEecchHHHHHHHHH-HHHHHHhcCCccchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH-------HHhhhh
Confidence 3346667766666655522221 12222222 124667888889988888888777777644 4555 666666
Q ss_pred HHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCC
Q psy6067 145 RLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRN 224 (584)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~ 224 (584)
-.+++.++ .+..--.. . ....+...+++.+ +-+....+-|.|..+---.+-.+..++.-+++=+.++.+.+.+.
T Consensus 143 la~nsiF~-l~~v~~IS---~-g~~i~~~viaiG~-~g~~Yai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~lG~Gs 216 (571)
T COG4146 143 LALNSIFH-LGEVLQIS---H-GAAIWLLVIAIGL-AGILYAIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGKGS 216 (571)
T ss_pred HHHhhhhc-hHhhhCcC---c-chHHHHHHHHHHH-HHHHHHHHcchhheeeccccchhhHhhhhHHHHHHHHHhhcCcc
Confidence 66777776 22110000 0 0001111122222 22334445667754443333333333333333333333322222
Q ss_pred cccccCCCc---cccccCCCCCCCCcchHHHHHHHHHHHHhh----hhhhhhhcccccccCcCCCchhHHHHHHHHHHHH
Q psy6067 225 WAIRKEDIP---RTVRHGGTGGFAPFGLNGIIVGAAKCFFGF----VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVC 297 (584)
Q Consensus 225 ~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~i~~~~~af----~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~vi 297 (584)
+..-.++.. ....+.-.+.-.|..|...+.++...-+.| .|+-.=+-.+.+.++-+|-+-.+-+.-+....++
T Consensus 217 fa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~vN~FYWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~L 296 (571)
T COG4146 217 FAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLVNTFYWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVL 296 (571)
T ss_pred HhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhhheeeeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHh
Confidence 221111111 000011112234556777888877665544 3444445556666666665433333333222222
Q ss_pred HHHHHHHHHhhccccccCcCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy6067 298 YLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAM 362 (584)
Q Consensus 298 yil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~ 362 (584)
-+- -+......++ ..+.|........+...-.+.-++....+-+.+++.|+.+..++ .++.|
T Consensus 297 vLP-Gliafhlygd-L~~aDmaYP~LVn~VlPv~l~GFf~AvLFGAilStFN~fLNSa~-Tlf~~ 358 (571)
T COG4146 297 VLP-GLIAFHLYGD-LPKADMAYPTLVNNVLPVPLVGFFGAVLFGAILSTFNGFLNSAS-TLFSM 358 (571)
T ss_pred hhh-HHHHHHHhcc-CCccccccHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhhh-HHhhh
Confidence 221 1112222222 22223333334444433333344444445555666666655444 44444
No 113
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=41.11 E-value=1e+02 Score=26.77 Aligned_cols=28 Identities=7% Similarity=-0.288 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccC
Q psy6067 70 VVISFIIAALASALSGLCYVEFASRISK 97 (584)
Q Consensus 70 ~~l~~ll~~l~~l~~al~~aEL~s~~P~ 97 (584)
.+..++++.++.++..+...-+-..+..
T Consensus 76 ~~~llilG~L~fIPG~Y~~~i~y~a~rg 103 (115)
T PF05915_consen 76 GWALLILGILCFIPGFYHTRIAYYAWRG 103 (115)
T ss_pred cchHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 5666667777777766665544444444
No 114
>KOG1289|consensus
Probab=38.81 E-value=6e+02 Score=28.38 Aligned_cols=138 Identities=13% Similarity=0.063 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhcccCcCC--ceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q psy6067 70 VVISFIIAALASALSGLCYV-EFASRISKSGS--AYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRL 146 (584)
Q Consensus 70 ~~l~~ll~~l~~l~~al~~a-EL~s~~P~~GG--~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~ 146 (584)
..+++++++++.+..+++.. .+.+.+-...| .-.+-.+.+|++.+....-...+.......+ .....+..
T Consensus 293 ~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~-------s~~a~SR~ 365 (550)
T KOG1289|consen 293 IAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGIS-------SLTASSRL 365 (550)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHH-------HHHHHHHH
Confidence 45667778888888888887 56555544322 3456677789887744443333333333333 22222222
Q ss_pred HHHHhc--CCCCCccccccCCC-CCCchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy6067 147 LKQLES--GGGETSTLTTDRYS-FLSTYPDFIAAGIVMLMSALISWGVSESTRLNSVFTFLNLGTVVVIVG 214 (584)
Q Consensus 147 l~~~~~--~~~~~~~~~~~~~~-~~~~~~~ii~~~~l~l~~~in~~G~r~~~~~~~~~~~~~l~~ll~~~i 214 (584)
+.++-- +.+.+.++...+.. ..+.+......++..++.++.+.+.-....+-....+.......+-++
T Consensus 366 v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~ 436 (550)
T KOG1289|consen 366 VYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIF 436 (550)
T ss_pred HhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 222211 34445555544333 222333334444444444555555444444444444444443333333
No 115
>KOG1286|consensus
Probab=37.84 E-value=72 Score=35.77 Aligned_cols=48 Identities=60% Similarity=1.151 Sum_probs=40.7
Q ss_pred ccchhHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHhh-hcccccc
Q psy6067 530 WVPLVPCLSIFMNIYLMINLDISTWV--RFVIWLVIGFGIYFT-YGISHSK 577 (584)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~-~~~~~~~ 577 (584)
+.|+.+.+.+..+.+++..++..+|. +...|..++...|.. |+.+|++
T Consensus 503 ~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 503 LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 45567788888999999988888999 999999999999977 8888765
No 116
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=34.12 E-value=1.6e+02 Score=30.19 Aligned_cols=74 Identities=14% Similarity=0.264 Sum_probs=42.1
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchh
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEF 112 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~ 112 (584)
+++++......+.+....|+-..... .....+ |+ ++.-+++++..++.| +||.+.|.+..+|+.
T Consensus 89 ~~~~k~~~~l~l~l~~~~g~~llg~~---~~~~s~---~~-~l~lG~l~~~~g~~Y---------TgGp~PlgY~gLGEi 152 (303)
T COG1575 89 RQSMKPALILSLALFLLAGLALLGVI---LAALSD---WL-VLLLGLLCIAAGILY---------TGGPFPLGYMGLGEI 152 (303)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH---HHHHhh---hH-HHHHHHHHHHheeee---------ccCCcCcccCCHHHH
Confidence 56788777777666655443221111 111112 33 444455555555555 799999999999985
Q ss_pred H-HHHHHHHHH
Q psy6067 113 A-AYIIGWNLE 122 (584)
Q Consensus 113 ~-g~~~g~~~~ 122 (584)
. +.+.|+...
T Consensus 153 ~~~vffG~l~v 163 (303)
T COG1575 153 FVGVFFGPLIV 163 (303)
T ss_pred HHHHHHHHHHH
Confidence 4 455555433
No 117
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=33.39 E-value=3.6e+02 Score=24.23 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=12.7
Q ss_pred CCCCcccccccchhHHHHHHHHH
Q psy6067 521 RARLKFKVPWVPLVPCLSIFMNI 543 (584)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~ 543 (584)
..+..|-.|...+...++....+
T Consensus 78 AGe~GfFsP~SwWPl~la~~~al 100 (137)
T PF12270_consen 78 AGELGFFSPHSWWPLVLAAAAAL 100 (137)
T ss_pred CCCcCcCCCccHhHHHHHHHHHH
Confidence 34566777765555554444433
No 118
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.92 E-value=96 Score=27.27 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=13.1
Q ss_pred CCCcchHHHHHHHHHHHHHH
Q psy6067 378 RTKTPVLSSLLTGALTAVLS 397 (584)
Q Consensus 378 ~~~~P~~Aill~~il~~~~~ 397 (584)
++..|..+.++.++++-++.
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIG 79 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHH
T ss_pred CccccceeehhHHHHHHHHH
Confidence 77788877777666666544
No 119
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=31.73 E-value=6.2e+02 Score=26.44 Aligned_cols=105 Identities=14% Similarity=0.201 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCc
Q psy6067 288 LLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGL 367 (584)
Q Consensus 288 ~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~ 367 (584)
..+++++++++.+....++-....-+ .....+..+.+.+|+.+.+..+...+..+++....+.+++-.+.+
T Consensus 39 ~~gIivs~vlf~~~g~vim~ig~~f~---a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e------ 109 (349)
T COG3949 39 ILGIILSTVLFTLSGAVIMTIGKKFN---ATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEE------ 109 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH------
Confidence 34566666666666665554332222 223556677788899999999999999999998888887765543
Q ss_pred cchhhhccCCCCCcchHHH-HHHHHHHHHHHHHhCHHHHHHHHHH
Q psy6067 368 LYDCFSYVSPRTKTPVLSS-LLTGALTAVLSAVFKLDQLVDMLSI 411 (584)
Q Consensus 368 lP~~f~~~~~~~~~P~~Ai-ll~~il~~~~~~~~~~~~l~~~~s~ 411 (584)
..|.|.+-= ++...+..+..+...++.+.+..++
T Consensus 110 ----------~~~lP~wiGali~i~~v~i~lfl~~vegi~tvn~i 144 (349)
T COG3949 110 ----------MFGLPYWIGALIIILLVLILLFLGRVEGIITVNGI 144 (349)
T ss_pred ----------HhCccHHHHHHHHHHHHHHHHHHhcccceeeehee
Confidence 356666522 3333333334444446655555443
No 120
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=29.68 E-value=6.4e+02 Score=27.37 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=19.1
Q ss_pred HHHHHHHhhchhHHHHHHHHhcCccchh
Q psy6067 344 LLTAMFGALFPLPRILYAMSLDGLLYDC 371 (584)
Q Consensus 344 ~~~s~~~~~~~~sR~l~a~A~dg~lP~~ 371 (584)
..+++....++.|+.+..+=-|+.=|+.
T Consensus 68 ~i~s~f~i~YG~sKf~~G~~sDr~npr~ 95 (448)
T COG2271 68 ILGSAFSITYGVSKFVMGVLSDRSNPRY 95 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCce
Confidence 3445566678888888888778654443
No 121
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=29.52 E-value=7.6e+02 Score=26.81 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=52.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChhHHH--HHHHHHHHHHHHHHHHHhhchhHH
Q psy6067 280 KRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVMK--WLVTVGSLFALLTAMFGALFPLPR 357 (584)
Q Consensus 280 ~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~--~li~~~~~~s~~~s~~~~~~~~sR 357 (584)
+|-+|-+.+.+++++.+.+++.... .++ +..+..+..+..... .+-.=++++-..+-..+..--..|
T Consensus 11 ~r~lPd~~vFa~~lt~iv~~~al~~----------~~~-~p~~~v~~wg~GfW~LL~F~MQM~lilvtG~~lA~sp~v~r 79 (438)
T TIGR00366 11 SKWLPDPLIFALLLTLVTFVLVIVL----------TKQ-TPVSLVDMWGNGFWNLLGFGMQMALILVTGYALAYSPIVYK 79 (438)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHh----------cCC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5778888888888887776655442 122 222333433322111 111122233333333333333344
Q ss_pred HHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh
Q psy6067 358 ILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF 400 (584)
Q Consensus 358 ~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~ 400 (584)
.+- |+-+.-++|..|+.+..+++.+..++.
T Consensus 80 ~l~-------------~la~~p~t~~~ai~~v~~vs~~~s~in 109 (438)
T TIGR00366 80 LLK-------------TIASLPKTPKQAVALVTFIGSIACWIN 109 (438)
T ss_pred HHH-------------HHHhCCCCCCceeehHHHHHHHHHHHH
Confidence 444 444366889999999988888776664
No 122
>KOG2349|consensus
Probab=27.49 E-value=5.4e+02 Score=29.06 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=28.5
Q ss_pred CCceeehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhc
Q psy6067 99 GSAYNYTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLES 152 (584)
Q Consensus 99 GG~y~~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~ 152 (584)
...|.|.+..||+..-.+....+.+......+. ..+.-+-.++...+
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v-------~~y~pal~~~qvtg 154 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPV-------DMYAPALAINQVTG 154 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheee-------eEeehHHHHHHHhc
Confidence 357888888888886566666666655555555 44444444444444
No 123
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=26.44 E-value=6.4e+02 Score=24.96 Aligned_cols=98 Identities=15% Similarity=0.021 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCH-----HHH
Q psy6067 331 VMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKL-----DQL 405 (584)
Q Consensus 331 ~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~-----~~l 405 (584)
....++....++..+.........+.|.+. |.|.-.+.+.+.+ +.+.|.+.+++..+...+....... +.+
T Consensus 156 ~~~~~~P~~~~i~~~~~~~~~~~l~~~il~---r~~~~~~~~~~~~-~~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i 231 (290)
T PF09991_consen 156 LIKRLFPALLIISALLMSLINYYLARRILR---RLGIPIPPLPPFR-EWRLPRWLIWLLIVALALSLVGGGFGGSWLQII 231 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCCCCCchH-HHhCcHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 344555555555555555555555566553 3333223333344 6788999888776555544443322 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy6067 406 VDMLSIGTLLAYTIVALSVLILRYSED 432 (584)
Q Consensus 406 ~~~~s~~~l~~y~l~~la~i~~r~~~~ 432 (584)
..-........|.+..++++...-+++
T Consensus 232 ~~Nl~~v~~~l~~~qGla~~~~~~~~~ 258 (290)
T PF09991_consen 232 GLNLLIVLSFLFFIQGLAVIHFFLKRR 258 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444456666777788887777665554
No 124
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=25.70 E-value=88 Score=30.08 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=26.5
Q ss_pred ccccccCcC-CCchhHHHHHHHHHHHHHHHHHHHH
Q psy6067 272 TGEESKNPK-RDIPLSILLSLFIVFVCYLAIAIVL 305 (584)
Q Consensus 272 ~~~E~knP~-k~ip~ai~~~i~i~~viyil~~~~~ 305 (584)
.-|-.+||| |.+||+++.+.+.+.++-+...+..
T Consensus 203 TIEGfHDPKFKr~p~~vias~vaS~~~gii~v~~~ 237 (240)
T PRK00968 203 TIEGFHDPKFKRWPRAVIASFVASLVCGIVAVLMI 237 (240)
T ss_pred eeecCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 456778997 8999999999988887766655543
No 125
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.03 E-value=88 Score=28.24 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=25.7
Q ss_pred cchhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhhhcccc
Q psy6067 531 VPLVPCLSIFMNIYLMINLDI-STWVRFVIWLVIGFGIYFTYGISH 575 (584)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~ 575 (584)
..+.|.+++++...+.-.++. +.+..+.+.+..+..++.+.++.|
T Consensus 81 vYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r~ysR 126 (150)
T COG3086 81 VYIFPLVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLARRYSR 126 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888877777444333 344445555555555555544433
No 126
>PF11045 YbjM: Putative inner membrane protein of Enterobacteriaceae; InterPro: IPR020368 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=24.86 E-value=2.9e+02 Score=24.31 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q psy6067 497 YATFTLLGLVYTVVFVCLARQ 517 (584)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~ 517 (584)
|+...++.+++++++...+.+
T Consensus 7 W~g~i~cfvLf~vVfl~~~~~ 27 (125)
T PF11045_consen 7 WAGVICCFVLFIVVFLFLKFH 27 (125)
T ss_pred chHHHHHHHHHHHHHHHhhcc
Confidence 567888889999998888744
No 127
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=23.53 E-value=8.2e+02 Score=25.15 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=39.2
Q ss_pred HHHHhcCccchhhhccCCC-----CCcchHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHH
Q psy6067 360 YAMSLDGLLYDCFSYVSPR-----TKTPVLSSLLTGALTAVLSAVF--KLDQLVDMLSIGTLLAYTIVAL 422 (584)
Q Consensus 360 ~a~A~dg~lP~~f~~~~~~-----~~~P~~Aill~~il~~~~~~~~--~~~~l~~~~s~~~l~~y~l~~l 422 (584)
+.+-.|+-+.+.+.|+++| .=.|..+..+..++..+-..+. ..+.+........++.|....-
T Consensus 71 ~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT 140 (304)
T COG0109 71 FNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYT 140 (304)
T ss_pred HhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555677777777777632 1157788888877777644433 3455666666666666665544
No 128
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=22.54 E-value=2.7e+02 Score=22.20 Aligned_cols=39 Identities=15% Similarity=-0.009 Sum_probs=31.5
Q ss_pred hcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy6067 270 ATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLI 308 (584)
Q Consensus 270 ~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~ 308 (584)
..+-+|++.|=|.+.+-+..+...+..+-.+++..=...
T Consensus 7 ~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a 45 (75)
T PF11998_consen 7 ARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLIA 45 (75)
T ss_pred HHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445679999999999999999999988887777655443
No 129
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=22.20 E-value=5.1e+02 Score=26.75 Aligned_cols=35 Identities=20% Similarity=0.501 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhH-HHHHHHHH
Q psy6067 78 ALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFA-AYIIGWNL 121 (584)
Q Consensus 78 ~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~-g~~~g~~~ 121 (584)
++.....++.| +||.+.+.++.+|+.. +...|+..
T Consensus 120 gl~g~~~~~~Y---------t~gP~~l~y~gLGe~~v~i~~G~~~ 155 (317)
T PRK13387 120 GLICFAIGILY---------TGGPLPLSRMPLGEIFSGLTMGFGI 155 (317)
T ss_pred HHHHHHHhhhh---------cCCCcccccCccHHHHHHHHHHHHH
Confidence 44455556655 5688888889999764 55666643
No 130
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=22.09 E-value=1e+03 Score=25.77 Aligned_cols=76 Identities=9% Similarity=0.035 Sum_probs=55.0
Q ss_pred ehHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHH
Q psy6067 104 YTYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLM 183 (584)
Q Consensus 104 ~~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~ 183 (584)
.+++.+|+.-..+.+....++...+... ...+.++|+++.++ ...-..+.++..++.
T Consensus 266 i~~~~~G~~G~~ll~iiv~lACLTTaIG-------L~~a~a~yf~~~~~----------------kisY~~~v~i~~i~S 322 (427)
T PF05525_consen 266 IANHLFGSAGQILLGIIVFLACLTTAIG-------LISACAEYFSELFP----------------KISYKVWVIIFTIFS 322 (427)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc----------------ccChHHHHHHHHHHH
Confidence 4556688888888998888888777777 88888999998886 222234555666777
Q ss_pred HHHHHhhhhhhHHHHHHHH
Q psy6067 184 SALISWGVSESTRLNSVFT 202 (584)
Q Consensus 184 ~~in~~G~r~~~~~~~~~~ 202 (584)
..+...|.+..-++..-..
T Consensus 323 ~~ian~Gl~~Ii~~s~PiL 341 (427)
T PF05525_consen 323 FIIANLGLDQIIKISVPIL 341 (427)
T ss_pred HHHHHhCHHHHHHHHHHHH
Confidence 7888888887666554433
No 131
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=22.06 E-value=4.4e+02 Score=26.73 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhchhH-HHHHHHH
Q psy6067 74 FIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGEFA-AYIIGWN 120 (584)
Q Consensus 74 ~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~~~-g~~~g~~ 120 (584)
+++-++.....++.| +||...+.++.+|+.. +...|..
T Consensus 111 ~l~lg~~~~~~~~~Y---------t~gP~~l~y~gLGE~~v~i~~G~l 149 (284)
T TIGR00751 111 FIALGALCIAAAITY---------TVGSKPYGYAGLGDISVLVFFGPL 149 (284)
T ss_pred HHHHHHHHHHHhHhh---------cCCCCccccCchHHHHHHHHHHHH
Confidence 344444555566666 5678888889999754 3344443
Done!