Query psy6067
Match_columns 584
No_of_seqs 189 out of 2130
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 16:47:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 2.1E-51 7.1E-56 443.5 42.1 423 31-579 5-435 (445)
2 3gia_A Uncharacterized protein 100.0 9.3E-49 3.2E-53 422.8 38.4 364 32-432 4-370 (444)
3 4djk_A Probable glutamate/gamm 100.0 6E-46 2.1E-50 407.9 41.2 371 28-432 5-397 (511)
4 2jln_A MHP1; hydantoin, transp 99.2 3.2E-08 1.1E-12 107.5 34.6 289 31-362 22-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.1 0.0009 3.1E-08 74.0 27.6 298 33-359 48-377 (593)
6 3dh4_A Sodium/glucose cotransp 98.0 0.00097 3.3E-08 72.7 24.9 297 33-358 19-347 (530)
7 2a65_A Leutaa, Na(+):neurotran 97.6 0.12 4.1E-06 55.6 32.2 181 177-367 173-371 (519)
8 2wsw_A BCCT family betaine/car 94.9 4.8 0.00017 42.8 27.8 89 336-430 412-505 (509)
9 4ain_A Glycine betaine transpo 92.5 5.5 0.00019 42.6 18.3 170 248-431 321-507 (539)
10 2l2t_A Receptor tyrosine-prote 25.0 47 0.0016 22.6 2.4 13 565-577 28-40 (44)
11 2ks1_B Epidermal growth factor 24.2 49 0.0017 22.5 2.4 13 565-577 29-41 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=2.1e-51 Score=443.51 Aligned_cols=423 Identities=18% Similarity=0.223 Sum_probs=362.2
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhc
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIG 110 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG 110 (584)
++||+++.++++++++++++|+|+|..++.+. .+|+.++++|+++++.+++.+++|+|+++++|++||.|.|+++.+|
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFG 82 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence 46789999999999999999999999988743 4688899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 111 EFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 111 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
|.+|+..+|.+++.+....+. ++...+++++.+++ ..+ .+.+..+++++++++.+.+|++|
T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~in~~g 143 (445)
T 3l1l_A 83 PFLGYQTNVLYWLACWIGNIA-------MVVIGVGYLSYFFP---------ILK---DPWVLTITCVVVLWIFVLLNIVG 143 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTTTCG---------GGG---SHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCc---------ccc---ccHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988888 88888888776654 110 12345677888889999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhh
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIA 270 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~ 270 (584)
+|..++++.+++..+++.++++++.++...+.+++... +++ .+ ..++.++..++...+|+|.|+|.++
T Consensus 144 ~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-------~~~---~~--~~~~~~~~~~~~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 144 PKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAA-------WNV---SG--LGTFGAIQSTLNVTLWSFIGVESAS 211 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------------------HHHHHHHHHHTTTTTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccc-------cCc---cC--CccHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999888888765544332110 000 00 1135578889999999999999999
Q ss_pred cccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC-cCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHHH
Q psy6067 271 TTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD-AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAMF 349 (584)
Q Consensus 271 ~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~-~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~~ 349 (584)
+++||+|||+|++||+++.+..++.++|++..++.....|+++.. .++|+.+++++.++++...++.++.+++.+++.+
T Consensus 212 ~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 291 (445)
T 3l1l_A 212 VAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLG 291 (445)
T ss_dssp HGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764 4679999999988899999999999999999999
Q ss_pred HhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHh-------CHHHHHHHHHHHHHHHHHHHHH
Q psy6067 350 GALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVF-------KLDQLVDMLSIGTLLAYTIVAL 422 (584)
Q Consensus 350 ~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~-------~~~~l~~~~s~~~l~~y~l~~l 422 (584)
+.+++.+|.+++|||||.+|++|+|+| |+++|+++++++.+++.++.++. .++.+.++.++..++.|.+.++
T Consensus 292 ~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 370 (445)
T 3l1l_A 292 GWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCA 370 (445)
T ss_dssp HHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 67999999999999887766542 4789999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCccccccccccchhhhhcccccccCCCCCCcCCCCCCccccccccccccchhhhHHHHHHH
Q psy6067 423 SVLILRYSEDGADTPIKGTSCAEKETKSSSFAEKDINAKNFSVNALPEETLDPNSQSALTGGPVPTSDCTSALQYATFTL 502 (584)
Q Consensus 423 a~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (584)
+++++|+|+|
T Consensus 371 ~~~~~r~~~~---------------------------------------------------------------------- 380 (445)
T 3l1l_A 371 ALLLLGHGHF---------------------------------------------------------------------- 380 (445)
T ss_dssp HHHHHHSSSS----------------------------------------------------------------------
T ss_pred HHHHHhhcCc----------------------------------------------------------------------
Confidence 9999988752
Q ss_pred HHHHHHHHHHHHhcccCCCCCCcccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy6067 503 LGLVYTVVFVCLARQNQNRARLKFKVPWVPLVPCLSIFMNIYLMINLDISTWVRFVIWLVIGFGIYFTYGISHSKQK 579 (584)
Q Consensus 503 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~ 579 (584)
+ .|.|..++++.++.+.+++++...++..+....+++++|+.+|..+++++++++
T Consensus 381 ------------------~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (445)
T 3l1l_A 381 ------------------G----KARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP 435 (445)
T ss_dssp ------------------G----GGCTTTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred ------------------c----cccchhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 0 123567789999999999999999999999999999999999998877665543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=9.3e-49 Score=422.80 Aligned_cols=364 Identities=21% Similarity=0.326 Sum_probs=323.7
Q ss_pred cccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhch
Q psy6067 32 LARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGE 111 (584)
Q Consensus 32 l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~ 111 (584)
.||+++.++++++++++++|+|+|..++... ..+|++.+++|+++++++++.+++++|+++++|++||.|.|+++.+||
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 5789999999999999999999999998755 678899999999999999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 112 FA-AYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 112 ~~-g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
++ +...+|.+++.+....+. ++...++++...++ .. ..+.+..+++++++++.+.+|++|
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~-------~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~in~~g 143 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIAL-------FAKGFAGYFLPLIN-AP-----------INTFNIAITEIGIVAFFTALNFFG 143 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT-CC-----------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhC-CC-----------CchHHHHHHHHHHHHHHHHHHHHh
Confidence 63 555689999999999999 99999999998876 10 012234467788889999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHHHHHhhhhhhhhh
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCFFGFVGFDCIA 270 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~af~G~e~~~ 270 (584)
+|..++++.+++..+++.++++++.++...+++++.+ .+.++|+.+++.++...+|+|.|+|.++
T Consensus 144 ~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~---------------~~~~~g~~~~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 144 SKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIP---------------DLAPSAVSGMIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSC---------------CCSHHHHHHHHHHHHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCC---------------CCCCcchHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999988888877655443321 1345677788999999999999999999
Q ss_pred cccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccC--cCCcHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Q psy6067 271 TTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQD--AEAPFPHIFDSLGWPVMKWLVTVGSLFALLTAM 348 (584)
Q Consensus 271 ~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~--~~~p~~~~~~~~~~~~~~~li~~~~~~s~~~s~ 348 (584)
+++||+|||+|++||++..+..++.++|++..++.....|++++. ++.|+.++++...+++...++.++.+++.+++.
T Consensus 209 ~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 288 (444)
T 3gia_A 209 NASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAM 288 (444)
T ss_dssp TTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887753 345788888888788888999999999999999
Q ss_pred HHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6067 349 FGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTAVLSAVFKLDQLVDMLSIGTLLAYTIVALSVLILR 428 (584)
Q Consensus 349 ~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~~~~~~~~~~~l~~~~s~~~l~~y~l~~la~i~~r 428 (584)
++.+++.||++++|||||.+|++|+|+| | ++|.++++++.+++.++.++.+++.+.++.+++.++.|.+.+++++++|
T Consensus 289 ~~~~~~~sR~l~a~a~dg~lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 366 (444)
T 3gia_A 289 NATIYGGANVAYSLAKDGELPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILI 366 (444)
T ss_dssp HHHHTTTHHHHHHHHHHSSCCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998 4 5699999999999999999999999999999999999999999999998
Q ss_pred hccC
Q psy6067 429 YSED 432 (584)
Q Consensus 429 ~~~~ 432 (584)
+++|
T Consensus 367 ~~~~ 370 (444)
T 3gia_A 367 DEVG 370 (444)
T ss_dssp HHHC
T ss_pred hcCC
Confidence 8764
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=6e-46 Score=407.94 Aligned_cols=371 Identities=16% Similarity=0.182 Sum_probs=284.0
Q ss_pred CccccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChHHHHHHHHHHHHH-HHHHHHHHHhhh--cccCcCCceee
Q psy6067 28 SREKLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPSVVISFIIAALAS-ALSGLCYVEFAS--RISKSGSAYNY 104 (584)
Q Consensus 28 ~~~~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~~~l~~ll~~l~~-l~~al~~aEL~s--~~P~~GG~y~~ 104 (584)
++++++|+++.+++++++++.++| ++..+. ...+|+..++.+++++++. ++.+++++|+++ ++| +||.|.|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~---~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT---FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH---HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 445789999999999999999986 444443 2568888887788877776 569999999999 999 9999999
Q ss_pred hHHHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHH
Q psy6067 105 TYLSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMS 184 (584)
Q Consensus 105 ~~~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~ 184 (584)
+++.+||.+|+++||.+++++....+. +....++++++.+. .+ +.+..+....+++++++++++
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~p------~~~~~~~~~~~~~~~~~~~~~ 142 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIP-------MLYFVLGALSYILK---WP------ALNEDPITKTIAALIILWALA 142 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHH-------HHHHHHHHHHTTTT---CG------GGTSCSSHHHHHHHHHHHHHH
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc---Cc------ccccCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888 87777777765532 00 111123345678888889999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHH-HHHHhhhhhcccccCCCc---ccccCCCccccccCCCCCCCCcchHHHHHHHHHHH
Q psy6067 185 ALISWGVSESTRLNSVFTFLNLG-TVVVIVGSGLFKMNPRNW---AIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAKCF 260 (584)
Q Consensus 185 ~in~~G~r~~~~~~~~~~~~~l~-~ll~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~ 260 (584)
.+|++|+|..++++.+.+.++++ .++++++.++.....++. ......+..+ +.. .+.+.++...+
T Consensus 143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~ 211 (511)
T 4djk_A 143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPD--------FSK---VGTLVVFVAFI 211 (511)
T ss_dssp HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCC--------TTS---TTTTTTHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCC--------ccc---chHHHHHHHHH
Confidence 99999999999999998888644 355555555543221111 0001111100 000 12233456779
Q ss_pred HhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHH----HHcC--hhHHHH
Q psy6067 261 FGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIF----DSLG--WPVMKW 334 (584)
Q Consensus 261 ~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~----~~~~--~~~~~~ 334 (584)
|+|.|+|.+++++||+|||+|++||+++.++.++.++|++..+++..++|+++...+++..+.+ +..+ .++...
T Consensus 212 ~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 291 (511)
T 4djk_A 212 LSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVR 291 (511)
T ss_dssp HHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHH
T ss_pred HHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHH
Confidence 9999999999999999999999999999999999999999999999999998876655544433 3345 578889
Q ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHHHHHHH-HHHHHhC--------HHHH
Q psy6067 335 LVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLTGALTA-VLSAVFK--------LDQL 405 (584)
Q Consensus 335 li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~~il~~-~~~~~~~--------~~~l 405 (584)
++.+..+++.+++.++.+++.||+++++||||.+|++|+|+| |+++|+++++++.++.. .+..+.+ ++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l 370 (511)
T 4djk_A 292 VISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIA 370 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999 67999999999854433 3333444 7889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy6067 406 VDMLSIGTLLAYTIVALSVLILRYSED 432 (584)
Q Consensus 406 ~~~~s~~~l~~y~l~~la~i~~r~~~~ 432 (584)
.++.++..++.|.+.+++++++|+|++
T Consensus 371 ~~~~~~~~~~~y~~~~~~~~~~r~~~~ 397 (511)
T 4djk_A 371 LALTVVIYLCAYFMLFIGYIVLVLKHP 397 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998865
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.20 E-value=3.2e-08 Score=107.50 Aligned_cols=289 Identities=12% Similarity=-0.021 Sum_probs=162.2
Q ss_pred ccccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH---HHHHHHHHHHHHHHHHHHHHHhhhcccCcCC-ceeehH
Q psy6067 31 KLARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS---VVISFIIAALASALSGLCYVEFASRISKSGS-AYNYTY 106 (584)
Q Consensus 31 ~l~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~---~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG-~y~~~~ 106 (584)
+.+|+.++++.+.+=++..+..+.+...+... . |-. ++++.+++.++..+.....+.++.+ .|- .....+
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~---~Gl~~~v~~R 95 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIR---WGINFTVAAR 95 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH---HCCCHHHHTT
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh---cCCChhhhhH
Confidence 34677899999999888887777776555433 2 432 5555555555555444444444444 343 445778
Q ss_pred HHhchhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHH
Q psy6067 107 LSIGEFAAYIIGWNLELFIEVQAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSAL 186 (584)
Q Consensus 107 ~~lG~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~i 186 (584)
..||+..+.+..+...+..+...+. +....++.+...+... + + .....+..+++.++...+
T Consensus 96 ~~FG~~Gs~i~~ll~~i~~igw~~v-------~~~~gg~al~~~~~~~-----~-g------~~~~~v~~~i~~~l~~~~ 156 (501)
T 2jln_A 96 MPFGIRGSLIPITLKALLSLFWFGF-------QTWLGALALDEITRLL-----T-G------FTNLPLWIVIFGAIQVVT 156 (501)
T ss_dssp TTSCTTTTHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----H-C------CCCHHHHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh-----c-C------cchHHHHHHHHHHHHHHH
Confidence 8899988888888777777776666 6666666666654200 0 0 011233444555667788
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHHHHH-HHHhhhh
Q psy6067 187 ISWGVSESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVGAAK-CFFGFVG 265 (584)
Q Consensus 187 n~~G~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~-~~~af~G 265 (584)
.+.|.|...+++++.....++..+.+.+..+...+. .+.+... . .. . ....+++.++.. +.+...+
T Consensus 157 ~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~-~~~~~~~----~---~~--~---~~~~~f~~ai~~~~~~~~~~ 223 (501)
T 2jln_A 157 TFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADV-SLGEVMS----M---GG--E---NPGMPFSTAIMIFVGGWIAV 223 (501)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CHHHHTT----C---CC--S---SCCSCHHHHHHHHHTTTHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchhhhc----c---CC--c---cchHHHHHHHHHHHHHHHHH
Confidence 899999999999999888887777666655543321 0010000 0 00 0 001124444333 2222244
Q ss_pred hhhhhcccccccCcCCC-----------chhHHHHHHHHHHHHHHHHHHHHHhhccccccCcCCcHHHHHHHcChhHH-H
Q psy6067 266 FDCIATTGEESKNPKRD-----------IPLSILLSLFIVFVCYLAIAIVLTLIIPYYEQDAEAPFPHIFDSLGWPVM-K 333 (584)
Q Consensus 266 ~e~~~~~~~E~knP~k~-----------ip~ai~~~i~i~~viyil~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~-~ 333 (584)
.-..+.++.+.|++++. .-.+...+..+..++..+........ ....+|...+.+.+.++.. .
T Consensus 224 ~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~ 298 (501)
T 2jln_A 224 VVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPM 298 (501)
T ss_dssp HTTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHH
T ss_pred HhccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHH
Confidence 45567788888876441 33444444444443333322222221 1223455544443433433 5
Q ss_pred HHHH-HHHHHHHHHHHH-HhhchhHHHHHHH
Q psy6067 334 WLVT-VGSLFALLTAMF-GALFPLPRILYAM 362 (584)
Q Consensus 334 ~li~-~~~~~s~~~s~~-~~~~~~sR~l~a~ 362 (584)
.+.. +.++++.+++.. +.++..+--+..+
T Consensus 299 ~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 299 AILFQVFVLLATWSTNPAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 6666 677777777666 3677766666555
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.12 E-value=0.0009 Score=73.97 Aligned_cols=298 Identities=11% Similarity=0.068 Sum_probs=137.4
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhch
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGE 111 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~ 111 (584)
.|+++++-..+-.++..+++..+......++. .|.. .+..|. +.+...+.++.+...-.+. +.-..++|.++-+|+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 57888886666566666777766555444433 4543 222222 2222233344444433333 234688899999999
Q ss_pred hHHHHHHHHHHHHHHH-HhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 112 FAAYIIGWNLELFIEV-QAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 112 ~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
....+.+....+.+.. ..+. ...+.+..++..++ .+.. ..+.+..++........|
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~-------~l~~~~~~l~~~~G---------------i~~~-~~i~i~~~i~~~Yt~~GG 181 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTS-------VLYLGGLALETILG---------------IPLM-YSILGLALFALVYSIYGG 181 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH-------HHHHHHHHHHHHHC---------------CCHH-HHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC---------------ccHH-HHHHHHHHHHHHHHHhcc
Confidence 8877776655543333 3444 55556666777766 1111 112222223344455577
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhcccccC-CCc--------ccccCCCccccccCCCCCCCC-cchHHHHHHHHHHH
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVIVGSGLFKMNP-RNW--------AIRKEDIPRTVRHGGTGGFAP-FGLNGIIVGAAKCF 260 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~i~~~~ 260 (584)
.|.+.+...+=..++++..+++.+..+...+. ++. +..++. .+.....+...+.. .++.-.+.+.....
T Consensus 182 l~av~~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 260 (593)
T 2xq2_A 182 LSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGH-FEMILDQSNPQYMNLPGIAVLIGGLWVAN 260 (593)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGG-SCSSCCSSSGGGGTSCTTHHHHSTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhh-cccccCCCCcccccchHHHHHHHHHHHHH
Confidence 88666655555555555444443333322110 000 000000 00000000000000 11211111111222
Q ss_pred Hhhhhhhh-hhcccccccCcCCCchhHHHHHHHHHHHHHHHHH---HHHHhh-cc--------------cccc-CcCCcH
Q psy6067 261 FGFVGFDC-IATTGEESKNPKRDIPLSILLSLFIVFVCYLAIA---IVLTLI-IP--------------YYEQ-DAEAPF 320 (584)
Q Consensus 261 ~af~G~e~-~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~---~~~~~~-~p--------------~~~~-~~~~p~ 320 (584)
..|.|.+. ...-.=+.||+ |+..|+...+.+...++.++.. +..... .+ ..+. +.+..+
T Consensus 261 ~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~ 339 (593)
T 2xq2_A 261 LYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAY 339 (593)
T ss_dssp HHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHH
T ss_pred HHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHH
Confidence 33444442 23344467775 6677888777665444433221 111111 00 0111 223344
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q psy6067 321 PHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRIL 359 (584)
Q Consensus 321 ~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l 359 (584)
.... +..++++.-++.++.+.+..++..+.+.+.+-.+
T Consensus 340 p~l~-~~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 340 PWLT-QFLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 6667888888888888888888888777766543
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.01 E-value=0.00097 Score=72.70 Aligned_cols=297 Identities=11% Similarity=0.061 Sum_probs=133.0
Q ss_pred ccccCHHHHHHHHhhhhhhhhHhHhHHHhHhhhcChH-HHHHHHHHHHHHHHHHHHHHHhhhcccCcCCceeehHHHhch
Q psy6067 33 ARVLGLTDLTLLGIGATLGVGVYVLAGSVAKNQAGPS-VVISFIIAALASALSGLCYVEFASRISKSGSAYNYTYLSIGE 111 (584)
Q Consensus 33 ~r~ls~~~~~~l~ig~~iG~gif~~~~~v~~~~aG~~-~~l~~ll~~l~~l~~al~~aEL~s~~P~~GG~y~~~~~~lG~ 111 (584)
.|+++++-..+..++..+++..+.......+. .|.. ....|. +++...+.+..+...-.+. +.-..++|.++-+|+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 58899988877777777777777655544433 4543 222222 2222223333333333332 234688899999999
Q ss_pred hHHHHHHHHHHHHHHH-HhhhhhhhhhhHHHHHHHHHHHHhcCCCCCccccccCCCCCCchhhHHHHHHHHHHHHHHHhh
Q psy6067 112 FAAYIIGWNLELFIEV-QAFCIEFSRIREAAALFRLLKQLESGGGETSTLTTDRYSFLSTYPDFIAAGIVMLMSALISWG 190 (584)
Q Consensus 112 ~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~l~~~in~~G 190 (584)
....+.+....+.+.. ..+. .....+..++..++ .+.. ..+.+..++.......-|
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~-------~l~~~~~~~~~~~G---------------i~~~-~~i~i~~~i~~~Yt~~GG 152 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTS-------VLYLGGLALETILG---------------IPLM-YSILGLALFALVYSIYGG 152 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH-------HHHHHHHHHHHHTT---------------CCHH-HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhC---------------CCHH-HHHHHHHHHHHHHHHhcc
Confidence 8877776655544433 2334 44555556666665 1111 111122222233334456
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhccccc-CCCc--------ccccCCCccccccCCCCCCCC-cchHHHHHHHHHHH
Q psy6067 191 VSESTRLNSVFTFLNLGTVVVIVGSGLFKMN-PRNW--------AIRKEDIPRTVRHGGTGGFAP-FGLNGIIVGAAKCF 260 (584)
Q Consensus 191 ~r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~i~~~~ 260 (584)
.|.+.+...+-..+.++..+++.+.++...+ .++. ...++. .+.....++..+.+ .++...+.+.....
T Consensus 153 l~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 231 (530)
T 3dh4_A 153 LSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGH-FEMILDQSNPQYMNLPGIAVLIGGLWVAN 231 (530)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGG-GCSSCCSSSSGGGGSCTTHHHHSTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchh-cccccCCCCccccccchHHHHHHHHHHHH
Confidence 7755555544444444443333333332211 1100 000100 00000000001110 12221221211222
Q ss_pred Hhhhhhhh-hhcccccccCcCCCchhHHHHHHHHHHHHHHH---HHHHHHhhcc----------------ccccCcCCcH
Q psy6067 261 FGFVGFDC-IATTGEESKNPKRDIPLSILLSLFIVFVCYLA---IAIVLTLIIP----------------YYEQDAEAPF 320 (584)
Q Consensus 261 ~af~G~e~-~~~~~~E~knP~k~ip~ai~~~i~i~~viyil---~~~~~~~~~p----------------~~~~~~~~p~ 320 (584)
+.|.|.+. ...-.=..||+ |+..|+...+.+...++.++ ..++.....+ ++..+.+..+
T Consensus 232 l~~~g~~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 310 (530)
T 3dh4_A 232 LYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAY 310 (530)
T ss_dssp HHHTTTTCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHH
T ss_pred HHHHcCCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHH
Confidence 33444432 22222235665 55677777766554332221 1111111111 1111234445
Q ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q psy6067 321 PHIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRI 358 (584)
Q Consensus 321 ~~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~ 358 (584)
....+ ..++++.-++.++.+.+..++..+.+.+.+-.
T Consensus 311 p~l~~-~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~ 347 (530)
T 3dh4_A 311 PWLTQ-FLPVGVKGVVFAALAAAIVSSLASMLNSTATI 347 (530)
T ss_dssp HHHHT-TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55555 66677777777888888888888877777655
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.60 E-value=0.12 Score=55.61 Aligned_cols=181 Identities=16% Similarity=0.141 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHhhhhhcccccCCCcccccCCCccccccCCCCCCCCcchHHHHHH
Q psy6067 177 AGIVMLMSALISWGV-SESTRLNSVFTFLNLGTVVVIVGSGLFKMNPRNWAIRKEDIPRTVRHGGTGGFAPFGLNGIIVG 255 (584)
Q Consensus 177 ~~~l~l~~~in~~G~-r~~~~~~~~~~~~~l~~ll~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 255 (584)
.+..++...+..+|+ |-.+|+.+++.....+.++++.+-++...++. ++ ..+...-.. ..+..... +..-+..+
T Consensus 173 ~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~-~~-A~~Gl~~~~-~Pd~s~L~--~~~vw~~A 247 (519)
T 2a65_A 173 LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPN-GT-AADGLNFLW-TPDFEKLK--DPGVWIAA 247 (519)
T ss_dssp HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETT-EE-HHHHHHHHH-SCCTTSTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hh-HHHHHHHHh-cCCHHHhC--CHHHHHHH
Confidence 445556778888999 67999999988887777777666665432210 00 000000000 00000111 12346778
Q ss_pred HHHHHHhh-hhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHH----h---hcc-cccc-CcC-C-----c
Q psy6067 256 AAKCFFGF-VGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLT----L---IIP-YYEQ-DAE-A-----P 319 (584)
Q Consensus 256 i~~~~~af-~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~----~---~~p-~~~~-~~~-~-----p 319 (584)
+..++|++ .|+.....++.-.|+ +.|++|........-...-++..+++. . ..+ .++. ++. . .
T Consensus 248 ~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~pgL~Fi~ 326 (519)
T 2a65_A 248 VGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFIT 326 (519)
T ss_dssp HHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTH
T ss_pred HHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCceeHHH
Confidence 88889987 488888888888775 577888655555544433333211111 1 112 1111 122 1 2
Q ss_pred HHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCc
Q psy6067 320 FPHIFDSLG-WPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGL 367 (584)
Q Consensus 320 ~~~~~~~~~-~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~ 367 (584)
+.+++.++. ++....++.++.+++.++|..+.+ ...-+.-.|+.
T Consensus 327 ~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~----E~~vt~l~D~~ 371 (519)
T 2a65_A 327 LPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIM----QPMIAFLEDEL 371 (519)
T ss_dssp HHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTS
T ss_pred HHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHh----hHhHHHHHHhh
Confidence 344555553 344555555555555555555544 44444445544
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=94.88 E-value=4.8 Score=42.77 Aligned_cols=89 Identities=13% Similarity=0.039 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHH--HHHHHHHHHHHHhC---HHHHHHHHH
Q psy6067 336 VTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSL--LTGALTAVLSAVFK---LDQLVDMLS 410 (584)
Q Consensus 336 i~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Ail--l~~il~~~~~~~~~---~~~l~~~~s 410 (584)
+....++..+.-..+..-+.+-++-.++.+|.-+ +.|| ..+.+..| +.++++..+...+. ++...-+..
T Consensus 412 ~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~----~~~p--~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~a 485 (509)
T 2wsw_A 412 TMWGFFILCFIATVTLINACSYTLAMSTCRSMKE----GADP--PLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAGG 485 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCT----TCCC--CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCC----CCCC--ChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3333333334444555556666777777665311 1121 22222222 22344444444443 555666667
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy6067 411 IGTLLAYTIVALSVLILRYS 430 (584)
Q Consensus 411 ~~~l~~y~l~~la~i~~r~~ 430 (584)
+.+.+..++.+.+.++.-++
T Consensus 486 lPf~~v~l~~~~sl~k~l~~ 505 (509)
T 2wsw_A 486 CPLFFVNIMVTLSFIKDAKV 505 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 77777777777777766444
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=92.50 E-value=5.5 Score=42.58 Aligned_cols=170 Identities=11% Similarity=-0.069 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHHHhhhhhhhhhcccccccCcCCCchhHHHHHHHHHHHHHHHHHHHHHhhc-----ccccc-CcCCcHH
Q psy6067 248 GLNGIIVGAAKCFFGFVGFDCIATTGEESKNPKRDIPLSILLSLFIVFVCYLAIAIVLTLII-----PYYEQ-DAEAPFP 321 (584)
Q Consensus 248 g~~~~~~~i~~~~~af~G~e~~~~~~~E~knP~k~ip~ai~~~i~i~~viyil~~~~~~~~~-----p~~~~-~~~~p~~ 321 (584)
+|.+-..-+..+.|.--.--....++.=.| -|+++--+...+++..+.-++....++... ...++ ...++-.
T Consensus 321 ~W~~~WTiFYWaWWiswaPfvG~FIARISr--GRTIREfv~gvl~vPsl~~~~WfsvfGg~ai~~~~~g~~~~~~~~~~~ 398 (539)
T 4ain_A 321 EWLGSWTIFYWAWWISWSPFVGMFLARISR--GRSIREFILGVLLVPAGVSTVWFSIFGGTAIVFEQNGESIWGDGAAEE 398 (539)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTTT--TCBHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTSCHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHhhhccC--CcCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhccchhhcCCHhh
Confidence 354444444444442222222333344444 378855555555544444333333322211 11111 1222222
Q ss_pred ---HHHHHcChhHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhcCccchhhhccCCCCCcchHHHHHH--HHHHHHH
Q psy6067 322 ---HIFDSLGWPVMKWLVTVGSLFALLTAMFGALFPLPRILYAMSLDGLLYDCFSYVSPRTKTPVLSSLLT--GALTAVL 396 (584)
Q Consensus 322 ---~~~~~~~~~~~~~li~~~~~~s~~~s~~~~~~~~sR~l~a~A~dg~lP~~f~~~~~~~~~P~~Aill~--~il~~~~ 396 (584)
..++++. +..++....++..+....+..-+.+-++-.++.+|. .+| ..+.+..|-. ++++..+
T Consensus 399 alf~~l~~lP---~~~i~~~l~iili~~FfvTSaDS~s~vl~~~ss~g~-------~~p--~~~~rifWgv~~g~va~~L 466 (539)
T 4ain_A 399 QLFGLLHALP---GGQIMGIIAMILLGTFFITSADSASTVMGTMSQHGQ-------LEA--NKWVTAAWGVATAAIGLTL 466 (539)
T ss_dssp HHHHHHHTST---THHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHTTTC-------SSC--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCc---hHHHHHHHHHHHHHHHHHHccchHHHHHHHHHcCCC-------CCC--CcchhhHHHHHHHHHHHHH
Confidence 3334442 233334444444444445555556666666665542 122 1223333322 3333333
Q ss_pred HHHhC---HH---HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy6067 397 SAVFK---LD---QLVDMLSIGTLLAYTIVALSVLILRYSE 431 (584)
Q Consensus 397 ~~~~~---~~---~l~~~~s~~~l~~y~l~~la~i~~r~~~ 431 (584)
...+. ++ ...-+..+.+.+..++.+.+.++--+++
T Consensus 467 L~~GG~~~L~aLQt~~ii~alPf~~v~llm~~sl~k~l~~d 507 (539)
T 4ain_A 467 LLSGGDNALSNLQNVTIVAATPFLFVVIGLMFALVKDLSND 507 (539)
T ss_dssp TTC-----CHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 33333 44 4555666777777777788877765543
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=24.96 E-value=47 Score=22.56 Aligned_cols=13 Identities=8% Similarity=-0.133 Sum_probs=5.2
Q ss_pred HHHHhhhcccccc
Q psy6067 565 FGIYFTYGISHSK 577 (584)
Q Consensus 565 ~~~y~~~~~~~~~ 577 (584)
..++++.++|+.+
T Consensus 28 ~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 28 LTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHTTCSS
T ss_pred HHHHHHhhhhhhh
Confidence 3344444443333
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=24.18 E-value=49 Score=22.50 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=5.3
Q ss_pred HHHHhhhcccccc
Q psy6067 565 FGIYFTYGISHSK 577 (584)
Q Consensus 565 ~~~y~~~~~~~~~ 577 (584)
..++++.++|+.+
T Consensus 29 ~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 29 LGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHhhhhHhh
Confidence 3344444444433
Done!